Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003057
(1435 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069044.1| calcium-binding protein p22 [Bos taurus]. 384 e-106
Alignment gi|NP_001179334.1| calcineurin B homologous protein 2 [Bos taur... 238 1e-62
Alignment gi|XP_002698044.1| PREDICTED: hepatocellular carcinoma antigen ... 238 1e-62
Alignment gi|NP_777008.1| calcineurin subunit B type 1 [Bos taurus]. 131 1e-30
Alignment gi|NP_001073099.1| calcineurin subunit B type 2 [Bos taurus]. 118 1e-26
Alignment gi|XP_002694632.1| PREDICTED: tescalcin-like [Bos taurus]. 112 8e-25
Alignment gi|XP_002701758.1| PREDICTED: tescalcin-like [Bos taurus]. 80 4e-15
Alignment gi|NP_001068901.1| calcium and integrin-binding protein 1 [Bos ... 66 9e-11
Alignment gi|XP_002696710.1| PREDICTED: calcium and integrin binding fami... 64 3e-10
Alignment gi|XP_874900.2| PREDICTED: calcium and integrin binding family ... 64 3e-10
>ref|NP_001069044.1| calcium-binding protein p22 [Bos taurus].
Length = 195
Score = 384 bits (986), Expect = e-106
Identities = 194/195 (99%), Positives = 195/195 (100%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKD+NGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 181 EKVDVEQKMSIRFLH 195
>ref|NP_001179334.1| calcineurin B homologous protein 2 [Bos taurus].
Length = 196
Score = 238 bits (606), Expect = 1e-62
Identities = 116/195 (59%), Positives = 155/195 (79%), Gaps = 1/195 (0%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSR+S R +++ +++ETGFS + + RLY RF +LD+ G LSR D Q+I LA+N
Sbjct: 1 MGSRSSHAARIPDVDSLRQETGFSQASLRRLYDRFNALDRTGKGYLSRMDLQQIGALAVN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPI-EDNEKSKDMNGPEPLNSRSNKLHFAF 472
PLGDRII++FFP+G +++F GF+R LAHFRP+ E+++ ++D PEPLNSR NKL FAF
Sbjct: 61 PLGDRIIDSFFPDGSLRLDFPGFVRVLAHFRPVDEEDDGNRDPKEPEPLNSRMNKLRFAF 120
Query: 473 RLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 652
+LYDLD+D KISR E+LQ LR+MVGV +++EQL SIADRT+QEAD+DGD A+SF EF K
Sbjct: 121 QLYDLDRDGKISRHEMLQALRLMVGVQVTEEQLESIADRTVQEADEDGDGAVSFLEFAKS 180
Query: 653 LEKVDVEQKMSIRFL 697
LEK+++EQKMSIR L
Sbjct: 181 LEKMNIEQKMSIRIL 195
>ref|XP_002698044.1| PREDICTED: hepatocellular carcinoma antigen gene 520-like [Bos
taurus].
Length = 196
Score = 238 bits (606), Expect = 1e-62
Identities = 116/195 (59%), Positives = 155/195 (79%), Gaps = 1/195 (0%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSR+S R +++ +++ETGFS + + RLY RF +LD+ G LSR D Q+I LA+N
Sbjct: 1 MGSRSSHAARIPDVDSLRQETGFSQASLRRLYDRFNALDRTGKGYLSRMDLQQIGALAVN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPI-EDNEKSKDMNGPEPLNSRSNKLHFAF 472
PLGDRII++FFP+G +++F GF+R LAHFRP+ E+++ ++D PEPLNSR NKL FAF
Sbjct: 61 PLGDRIIDSFFPDGSLRLDFPGFVRVLAHFRPVDEEDDGNRDPKEPEPLNSRMNKLRFAF 120
Query: 473 RLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 652
+LYDLD+D KISR E+LQ LR+MVGV +++EQL SIADRT+QEAD+DGD A+SF EF K
Sbjct: 121 QLYDLDRDGKISRHEMLQALRLMVGVQVTEEQLESIADRTVQEADEDGDGAVSFLEFAKS 180
Query: 653 LEKVDVEQKMSIRFL 697
LEK+++EQKMSIR L
Sbjct: 181 LEKMNIEQKMSIRIL 195
>ref|NP_777008.1| calcineurin subunit B type 1 [Bos taurus].
Length = 170
Score = 131 bits (330), Expect = 1e-30
Identities = 73/169 (43%), Positives = 99/169 (58%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F +I RL RF LD +G+LS E+F +PEL NPL R+I+ F +G +V+F+
Sbjct: 15 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ ++ F D E+ KL FAFR+YD+DKD IS EL QVL+MM
Sbjct: 75 FIEGVSQFSVKGDKEQ---------------KLRFAFRIYDMDKDGYISNGELFQVLKMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSI 688
VG N+ D QL I D+TI AD+DGD ISF EF V+ +D+ +KM +
Sbjct: 120 VGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 168
>ref|NP_001073099.1| calcineurin subunit B type 2 [Bos taurus].
Length = 170
Score = 118 bits (296), Expect = 1e-26
Identities = 67/167 (40%), Positives = 93/167 (55%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F +I RL RF LD + LS ++F +PEL NPL R+I+ F +G+ QV+FR
Sbjct: 15 FDEDEIKRLRKRFKKLDLDSSSALSVKEFTSMPELQENPLVQRVIDVFDTDGDGQVDFRE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ + F D E+ KL FAF +YD+DKD IS EL QVL+MM
Sbjct: 75 FILGTSQFSVRGDEEQ---------------KLRFAFSIYDMDKDGYISNGELFQVLKMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKM 682
VG N+ D QL + D+TI D+DGD ISF EF V+ +++ + +
Sbjct: 120 VGDNLKDWQLQQLVDKTIILLDKDGDGKISFQEFSAVVRSLEIHKHL 166
>ref|XP_002694632.1| PREDICTED: tescalcin-like [Bos taurus].
Length = 693
Score = 112 bits (280), Expect = 8e-25
Identities = 69/217 (31%), Positives = 114/217 (52%), Gaps = 20/217 (9%)
Frame = +2
Query: 119 GSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINP 298
G+ + EE+ E++ +TGFS QI +L+ RF L G+ T+ +E+F +P+L +NP
Sbjct: 478 GTMGAAHSASEEVRELEGKTGFSSDQIEQLHRRFKQLS-GDQPTIRKENFNNVPDLELNP 536
Query: 299 LGDRIINAFFPEGE---------DQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRS 451
+ +I+ AFF D++NF F+ +++FRPI+ M+ + R
Sbjct: 537 IRSKIVRAFFDNRNLRKGTSGLADEINFEDFLTIMSYFRPIDTT-----MDEEQVQLCRK 591
Query: 452 NKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVN--ISDEQLGSIADRTIQEA------D 607
KL F F +YD D D +I+ +E V+ ++ N I E SIAD + EA
Sbjct: 592 EKLRFLFHMYDSDSDGRITLEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCVGQ 651
Query: 608 QDGD---SAISFTEFVKVLEKVDVEQKMSIRFLH*RT 709
+ D I+F +F+K+ + +D+E KM +RFL+ T
Sbjct: 652 MEPDQVYEGITFDDFLKIWQGIDIETKMHVRFLNMET 688
>ref|XP_002701758.1| PREDICTED: tescalcin-like [Bos taurus].
Length = 655
Score = 80.1 bits (196), Expect = 4e-15
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 11/208 (5%)
Frame = +2
Query: 119 GSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINP 298
G+ + EE+ E++ +TGFS QI +L+ RF L G+ T+
Sbjct: 467 GTMGAAHSASEEVRELEGKTGFSSDQIEQLHRRFKQLS-GDQPTI--------------- 510
Query: 299 LGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRL 478
R + D++NF F+ +++FRPI+ M+ + R KL F F +
Sbjct: 511 ---RNLRKGTSGLADEINFEDFLTIMSYFRPIDTT-----MDEEQVQLCRKEKLRFLFHM 562
Query: 479 YDLDKDDKISRDELLQVLRMMVGVN--ISDEQLGSIADRTIQEA------DQDGDSA--- 625
YD D D +I+ +E V+ ++ N I E SIAD + EA + D
Sbjct: 563 YDSDSDGRITLEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCVGQMEPDQVYEG 622
Query: 626 ISFTEFVKVLEKVDVEQKMSIRFLH*RT 709
I+F +F+K+ + +D+E KM +RFL+ T
Sbjct: 623 ITFDDFLKIWQGIDIETKMHVRFLNMET 650
>ref|NP_001068901.1| calcium and integrin-binding protein 1 [Bos taurus].
Length = 191
Score = 65.9 bits (159), Expect = 9e-11
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 13/195 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFT--------SLDKGENGTLSREDFQ 271
MG S L + E L E + T + +I + RF S+++ +S E
Sbjct: 1 MGGSGSRLSK-ELLAEYQDLTFLTKQEILLAHRRFCELLPQEHRSVEESLQARVSLEQIL 59
Query: 272 RIPELAINPLGDRIINAFFPE-GEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSR 448
+PEL NP +RI F D ++F F+ L+ F D P+
Sbjct: 60 SLPELKANPFKERICKVFSTSPSRDSLSFEDFLDLLSVF---------SDTATPDI---- 106
Query: 449 SNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG----VNISDEQLGSIADRTIQEADQDG 616
K H+AFR++D D D ++R++L Q++ + G +S ++ + D ++E+D D
Sbjct: 107 --KSHYAFRIFDFDDDGTLNREDLSQLVNCLTGESEDTRLSASEMKQLIDNILEESDIDR 164
Query: 617 DSAISFTEFVKVLEK 661
D I+ +EF V+ +
Sbjct: 165 DGTINLSEFQHVISR 179
>ref|XP_002696710.1| PREDICTED: calcium and integrin binding family member 2-like [Bos
taurus].
Length = 218
Score = 63.9 bits (154), Expect = 3e-10
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = +2
Query: 272 RIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRS 451
++PEL NP +RI+ AF +GE + F F+ D + P L
Sbjct: 18 QMPELRENPFKERIVEAFSEDGEGNLTFNDFV----------DMFSVLCESAPREL---- 63
Query: 452 NKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAIS 631
K +AF++YD + D+ I +++L L + + ++++ + D+ I+EAD DGD +
Sbjct: 64 -KASYAFKIYDFNTDNFICKEDLQLTLARLTKSELDEDEVVLVCDKVIEEADLDGDGKLG 122
Query: 632 FTEFVKVLEK 661
F +F ++ K
Sbjct: 123 FADFEDMIAK 132
>ref|XP_874900.2| PREDICTED: calcium and integrin binding family member 2-like [Bos
taurus].
Length = 347
Score = 63.9 bits (154), Expect = 3e-10
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = +2
Query: 272 RIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRS 451
++PEL NP +RI+ AF +GE + F F+ D + P L
Sbjct: 223 QMPELRENPFKERIVEAFSEDGEGNLTFNDFV----------DMFSVLCESAPREL---- 268
Query: 452 NKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAIS 631
K +AF++YD + D+ I +++L L + + ++++ + D+ I+EAD DGD +
Sbjct: 269 -KASYAFKIYDFNTDNFICKEDLQLTLARLTKSELDEDEVVLVCDKVIEEADLDGDGKLG 327
Query: 632 FTEFVKVLEK 661
F +F ++ K
Sbjct: 328 FADFEDMIAK 337
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,852,065
Number of extensions: 1336260
Number of successful extensions: 4233
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4188
Number of HSP's successfully gapped: 27
Length of query: 478
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,174,046
Effective search space: 5272745112
Effective search space used: 5272745112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003057
(1435 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858442.1| PREDICTED: similar to Calcium-binding protein p... 384 e-106
Alignment gi|XP_858403.1| PREDICTED: similar to Calcium-binding protein p... 384 e-106
Alignment gi|XP_535438.1| PREDICTED: similar to Calcium-binding protein p... 384 e-106
Alignment gi|XP_858323.1| PREDICTED: similar to Calcium-binding protein p... 332 5e-91
Alignment gi|XP_547089.2| PREDICTED: similar to hepatocellular carcinoma ... 225 9e-59
Alignment gi|XP_858364.1| PREDICTED: similar to calcium binding protein P... 221 2e-57
Alignment gi|XP_858284.1| PREDICTED: similar to calcium binding protein P... 152 1e-36
Alignment gi|XP_855383.1| PREDICTED: similar to Calcineurin B subunit iso... 130 3e-30
Alignment gi|XP_853447.1| PREDICTED: similar to protein phosphatase 3 reg... 118 2e-26
Alignment gi|XP_854081.1| PREDICTED: similar to Tescalcin (TSC) [Canis fa... 99 1e-20
>ref|XP_858442.1| PREDICTED: similar to Calcium-binding protein p22 (Calcium-binding
protein CHP) (Calcineurin homologous protein)
(Calcineurin B homolog) isoform 6 [Canis familiaris].
Length = 195
Score = 384 bits (986), Expect = e-106
Identities = 194/195 (99%), Positives = 195/195 (100%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKD+NGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 181 EKVDVEQKMSIRFLH 195
>ref|XP_858403.1| PREDICTED: similar to Calcium-binding protein p22 (Calcium-binding
protein CHP) (Calcineurin homologous protein)
(Calcineurin B homolog) isoform 5 [Canis familiaris].
Length = 195
Score = 384 bits (986), Expect = e-106
Identities = 194/195 (99%), Positives = 195/195 (100%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKD+NGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 181 EKVDVEQKMSIRFLH 195
>ref|XP_535438.1| PREDICTED: similar to Calcium-binding protein p22 (Calcium-binding
protein CHP) (Calcineurin homologous protein)
(Calcineurin B homolog) isoform 1 [Canis familiaris].
Length = 195
Score = 384 bits (986), Expect = e-106
Identities = 194/195 (99%), Positives = 195/195 (100%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKD+NGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 181 EKVDVEQKMSIRFLH 195
>ref|XP_858323.1| PREDICTED: similar to Calcium-binding protein p22 (Calcium-binding
protein CHP) (Calcineurin homologous protein)
(Calcineurin B homolog) isoform 3 [Canis familiaris].
Length = 176
Score = 332 bits (851), Expect = 5e-91
Identities = 174/195 (89%), Positives = 176/195 (90%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFFPEG+D NEKSKD+NGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFPEGDD-------------------NEKSKDVNGPEPLNSRSNKLHFAFR 101
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 102 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 161
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 162 EKVDVEQKMSIRFLH 176
>ref|XP_547089.2| PREDICTED: similar to hepatocellular carcinoma antigen gene 520
[Canis familiaris].
Length = 203
Score = 225 bits (573), Expect = 9e-59
Identities = 110/172 (63%), Positives = 140/172 (81%), Gaps = 1/172 (0%)
Frame = +2
Query: 185 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGF 364
S + + RLY RF +LD+ + G LSR D Q+I LA+NPLGDRII++FFP+G +V+F GF
Sbjct: 31 SQASLLRLYHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIDSFFPDGNLRVDFPGF 90
Query: 365 MRTLAHFRPIEDNEKS-KDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
+R LAHFRP++D++ S +D PEPLNSR NKL FAF+LYDLD+D KISR E+LQVLR+M
Sbjct: 91 VRVLAHFRPVDDDDSSMRDPKEPEPLNSRMNKLRFAFQLYDLDRDGKISRHEMLQVLRLM 150
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFL 697
VGV +++EQL SIADRT+QEAD+DGD A+SF EF K LEK+D+EQKMSIR L
Sbjct: 151 VGVQVTEEQLESIADRTVQEADEDGDGAVSFLEFTKSLEKMDIEQKMSIRIL 202
>ref|XP_858364.1| PREDICTED: similar to calcium binding protein P22 isoform 4 [Canis
familiaris].
Length = 112
Score = 221 bits (562), Expect = 2e-57
Identities = 111/112 (99%), Positives = 112/112 (100%)
Frame = +2
Query: 365 MRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV 544
MRTLAHFRPIEDNEKSKD+NGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV
Sbjct: 1 MRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV 60
Query: 545 GVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH 700
GVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH
Sbjct: 61 GVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH 112
>ref|XP_858284.1| PREDICTED: similar to calcium binding protein P22 isoform 2 [Canis
familiaris].
Length = 128
Score = 152 bits (383), Expect = 1e-36
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = +2
Query: 467 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 646
AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV
Sbjct: 51 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 110
Query: 647 KVLEKVDVEQKMSIRFLH 700
KVLEKVDVEQKMSIRFLH
Sbjct: 111 KVLEKVDVEQKMSIRFLH 128
>ref|XP_855383.1| PREDICTED: similar to Calcineurin B subunit isoform 1 (Protein
phosphatase 2B regulatory subunit 1) (Protein
phosphatase 3 regulatory subunit B alpha isoform 1)
[Canis familiaris].
Length = 176
Score = 130 bits (327), Expect = 3e-30
Identities = 76/188 (40%), Positives = 104/188 (55%)
Frame = +2
Query: 125 RASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLG 304
R + E E +K +I RL RF LD +G+LS E+F +PEL NPL
Sbjct: 2 RLEIFMVPEIKEVLKMGIVVDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLV 61
Query: 305 DRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYD 484
R+I+ F +G +V+F+ F+ ++ F D E+ KL FAFR+YD
Sbjct: 62 QRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQ---------------KLRFAFRIYD 106
Query: 485 LDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKV 664
+DKD IS EL QVL+MMVG N+ D QL I D+TI AD+DGD ISF EF V+ +
Sbjct: 107 MDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL 166
Query: 665 DVEQKMSI 688
D+ +KM +
Sbjct: 167 DIHKKMVV 174
>ref|XP_853447.1| PREDICTED: similar to protein phosphatase 3 regulatory subunit B,
beta isoform [Canis familiaris].
Length = 170
Score = 118 bits (295), Expect = 2e-26
Identities = 68/169 (40%), Positives = 96/169 (56%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
FS +I RL RF LD +G+LS ++F +PEL NPL R+++ F +G +V+FR
Sbjct: 15 FSQDEIKRLGKRFKKLDLDCSGSLSVDEFLSLPELQQNPLVQRVVDVFDTDGNGEVDFRE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ + F D E+ KL FAF +YD+DKD IS EL QVL+MM
Sbjct: 75 FILGASQFSVRGDEEQ---------------KLRFAFSIYDMDKDGYISNGELFQVLKMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSI 688
V N+ D QL + D+TI D+DGD ISF EF V+ ++V +K+ +
Sbjct: 120 VRDNLKDWQLQQLVDKTIITLDRDGDGKISFEEFSAVVGGLEVHKKLVV 168
>ref|XP_854081.1| PREDICTED: similar to Tescalcin (TSC) [Canis familiaris].
Length = 276
Score = 98.6 bits (244), Expect = 1e-20
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 20/195 (10%)
Frame = +2
Query: 185 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGE-------- 340
S QI +L+ RF L G+ T+ +E+F +P+L +NP+ +I+ AFF
Sbjct: 83 SSDQIEQLHRRFKQLS-GDQPTIRKENFNNVPDLELNPIRSKIVRAFFDNRNLRKGSSGL 141
Query: 341 -DQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDE 517
D++NF F+ +++FRPI+ M+ + R KL F F +YD D D +I+ +E
Sbjct: 142 ADEINFEDFLTIMSYFRPIDTT-----MDEEQVQLCRKEKLRFLFHMYDSDSDGRITLEE 196
Query: 518 LLQVLRMMVGVN--ISDEQLGSIADRTIQEA------DQDGD---SAISFTEFVKVLEKV 664
V+ ++ N I E SIAD + EA + D I+F +F+K+ + +
Sbjct: 197 YRNVVEELLSGNPHIEKESARSIADGAMMEAASVCVGQMEPDQVYEGITFDDFLKIWQGI 256
Query: 665 DVEQKMSIRFLH*RT 709
D+E KM +RFL+ T
Sbjct: 257 DIETKMHVRFLNMET 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,077,971
Number of extensions: 1375146
Number of successful extensions: 4461
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4423
Number of HSP's successfully gapped: 26
Length of query: 478
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 371
Effective length of database: 15,307,552
Effective search space: 5679101792
Effective search space used: 5679101792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003057
(1435 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009167.1| calcium-binding protein p22 [Homo sapiens]. 382 e-106
Alignment gi|NP_071380.1| calcineurin B homologous protein 2 [Homo sapien... 242 5e-64
Alignment gi|NP_000936.1| calcineurin subunit B type 1 [Homo sapiens]. 131 1e-30
Alignment gi|NP_671709.1| calcineurin subunit B type 2 [Homo sapiens]. 122 6e-28
Alignment gi|NP_060369.3| tescalcin isoform 1 [Homo sapiens]. 115 1e-25
Alignment gi|NP_001161797.1| tescalcin isoform 2 [Homo sapiens]. 83 6e-16
Alignment gi|NP_006374.1| calcium and integrin-binding family member 2 [H... 73 8e-13
Alignment gi|NP_006375.2| calcium and integrin-binding protein 1 [Homo sa... 62 1e-09
Alignment gi|NP_001025052.1| calcium and integrin-binding family member 4... 60 4e-09
Alignment gi|NP_473454.1| calcium and integrin-binding family member 3 [H... 60 7e-09
>ref|NP_009167.1| calcium-binding protein p22 [Homo sapiens].
Length = 195
Score = 382 bits (982), Expect = e-106
Identities = 193/195 (98%), Positives = 195/195 (100%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKD+NGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKD+KISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 121 LYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 181 EKVDVEQKMSIRFLH 195
>ref|NP_071380.1| calcineurin B homologous protein 2 [Homo sapiens].
Length = 196
Score = 242 bits (618), Expect = 5e-64
Identities = 119/195 (61%), Positives = 155/195 (79%), Gaps = 1/195 (0%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSR+S + + I++ETGFS + + RL+ RF +LD+ + G LSR D Q+I LA+N
Sbjct: 1 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNE-KSKDMNGPEPLNSRSNKLHFAF 472
PLGDRII +FFP+G +V+F GF+R LAHFRP+ED + +++D PEPLNSR NKLH+AF
Sbjct: 61 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF 120
Query: 473 RLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 652
+LYDLD+D KISR E+LQVLR+MVGV +++EQL +IADRT+QEAD+DGD A+SF EF K
Sbjct: 121 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS 180
Query: 653 LEKVDVEQKMSIRFL 697
LEK+DVEQKMSIR L
Sbjct: 181 LEKMDVEQKMSIRIL 195
>ref|NP_000936.1| calcineurin subunit B type 1 [Homo sapiens].
Length = 170
Score = 131 bits (330), Expect = 1e-30
Identities = 73/169 (43%), Positives = 99/169 (58%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F +I RL RF LD +G+LS E+F +PEL NPL R+I+ F +G +V+F+
Sbjct: 15 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ ++ F D E+ KL FAFR+YD+DKD IS EL QVL+MM
Sbjct: 75 FIEGVSQFSVKGDKEQ---------------KLRFAFRIYDMDKDGYISNGELFQVLKMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSI 688
VG N+ D QL I D+TI AD+DGD ISF EF V+ +D+ +KM +
Sbjct: 120 VGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 168
>ref|NP_671709.1| calcineurin subunit B type 2 [Homo sapiens].
Length = 173
Score = 122 bits (307), Expect = 6e-28
Identities = 68/167 (40%), Positives = 99/167 (59%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F + +I RL RF LD ++G+LS E+F +PEL NPL R+I+ F +G+ +V+F+
Sbjct: 18 FDNDEIKRLGRRFKKLDLDKSGSLSVEEFMSLPELRHNPLVRRVIDVFDTDGDGEVDFKE 77
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ + F D E+ KL FAF +YD+DKD IS EL QVL+MM
Sbjct: 78 FILGTSQFSVKGDEEQ---------------KLRFAFSIYDMDKDGYISNGELFQVLKMM 122
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKM 682
VG N++D QL + D+TI D+DGD ISF EF V+ +++ +K+
Sbjct: 123 VGNNLTDWQLQQLVDKTIIILDKDGDGKISFEEFSAVVRDLEIHKKL 169
>ref|NP_060369.3| tescalcin isoform 1 [Homo sapiens].
Length = 214
Score = 115 bits (287), Expect = 1e-25
Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 20/207 (9%)
Frame = +2
Query: 149 EELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFF 328
EE+ E++ +TGFS QI +L+ RF L G+ T+ +E+F +P+L +NP+ +I+ AFF
Sbjct: 9 EEVRELEGKTGFSSDQIEQLHRRFKQLS-GDQPTIRKENFNNVPDLELNPIRSKIVRAFF 67
Query: 329 --------PEG-EDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLY 481
P G D++NF F+ +++FRPI+ M+ + SR KL F F +Y
Sbjct: 68 DNRNLRKGPSGLADEINFEDFLTIMSYFRPIDTT-----MDEEQVELSRKEKLRFLFHMY 122
Query: 482 DLDKDDKISRDELLQVLRMMVGVN--ISDEQLGSIADRTIQEA------DQDGD---SAI 628
D D D +I+ +E V+ ++ N I E SIAD + EA + D I
Sbjct: 123 DSDSDGRITLEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCMGQMEPDQVYEGI 182
Query: 629 SFTEFVKVLEKVDVEQKMSIRFLH*RT 709
+F +F+K+ + +D+E KM +RFL+ T
Sbjct: 183 TFEDFLKIWQGIDIETKMHVRFLNMET 209
>ref|NP_001161797.1| tescalcin isoform 2 [Homo sapiens].
Length = 187
Score = 83.2 bits (204), Expect = 6e-16
Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 11/198 (5%)
Frame = +2
Query: 149 EELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFF 328
EE+ E++ +TGFS QI +L+ RF L G+ T I L P G
Sbjct: 9 EEVRELEGKTGFSSDQIEQLHRRFKQLS-GDQPT--------IRNLRKGPSGLA------ 53
Query: 329 PEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKIS 508
D++NF F+ +++FRPI+ M+ + SR KL F F +YD D D +I+
Sbjct: 54 ----DEINFEDFLTIMSYFRPIDTT-----MDEEQVELSRKEKLRFLFHMYDSDSDGRIT 104
Query: 509 RDELLQVLRMMVGVN--ISDEQLGSIADRTIQEA------DQDGD---SAISFTEFVKVL 655
+E V+ ++ N I E SIAD + EA + D I+F +F+K+
Sbjct: 105 LEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCMGQMEPDQVYEGITFEDFLKIW 164
Query: 656 EKVDVEQKMSIRFLH*RT 709
+ +D+E KM +RFL+ T
Sbjct: 165 QGIDIETKMHVRFLNMET 182
>ref|NP_006374.1| calcium and integrin-binding family member 2 [Homo sapiens].
Length = 187
Score = 72.8 bits (177), Expect = 8e-13
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQR------- 274
MG++ T+ +E+L+ + T F+ I +L+SRF L L D+++
Sbjct: 1 MGNK-QTIFTEEQLDNYQDCTFFNKKDILKLHSRFYELAPN----LVPMDYRKSPIVHVP 55
Query: 275 ------IPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEP 436
+PEL NP +RI+ AF +GE + F F+ D + P
Sbjct: 56 MSLIIQMPELRENPFKERIVAAFSEDGEGNLTFNDFV----------DMFSVLCESAPRE 105
Query: 437 LNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDG 616
L K ++AF++YD + D+ I +++L L + + +E++ + D+ I+EAD DG
Sbjct: 106 L-----KANYAFKIYDFNTDNFICKEDLELTLARLTKSELDEEEVVLVCDKVIEEADLDG 160
Query: 617 DSAISFTEFVKVLEK 661
D + F +F ++ K
Sbjct: 161 DGKLGFADFEDMIAK 175
>ref|NP_006375.2| calcium and integrin-binding protein 1 [Homo sapiens].
Length = 191
Score = 62.4 bits (150), Expect = 1e-09
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 13/195 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSR--------EDFQ 271
MG S L + E L E + T + +I + RF L E ++ E
Sbjct: 1 MGGSGSRLSK-ELLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQIL 59
Query: 272 RIPELAINPLGDRIINAFFPE-GEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSR 448
+PEL NP +RI F +D ++F F+ L+ F D P+
Sbjct: 60 SLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVF---------SDTATPDI---- 106
Query: 449 SNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG----VNISDEQLGSIADRTIQEADQDG 616
K H+AFR++D D D ++R++L +++ + G +S ++ + D ++E+D D
Sbjct: 107 --KSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 164
Query: 617 DSAISFTEFVKVLEK 661
D I+ +EF V+ +
Sbjct: 165 DGTINLSEFQHVISR 179
>ref|NP_001025052.1| calcium and integrin-binding family member 4 [Homo sapiens].
Length = 185
Score = 60.5 bits (145), Expect = 4e-09
Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Frame = +2
Query: 149 EELEEIKKETGFSHSQITRLYSRFTSLDKG----ENGTLSREDFQRIPELAINPLGDRII 316
E+LEE + T + ++I ++ F L + TL+ + +P L +NP DRI
Sbjct: 12 EDLEEYQALTFLTRNEILCIHDTFLKLCPPGKYYKEATLTMDQVSSLPALRVNPFRDRIC 71
Query: 317 NAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKD 496
F +G +F + + F +E++ S K+ +AFR+YD +++
Sbjct: 72 RVFSHKG--MFSFEDVLGMASVF-----SEQA----------CPSLKIEYAFRIYDFNEN 114
Query: 497 DKISRDELLQV-LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 661
I ++L ++ LR++ ++S++ L + + + E+D D D+ +SF+EF + K
Sbjct: 115 GFIDEEDLQRIILRLLNSDDMSEDLLMDLTNHVLSESDLDNDNMLSFSEFEHAMAK 170
>ref|NP_473454.1| calcium and integrin-binding family member 3 [Homo sapiens].
Length = 187
Score = 59.7 bits (143), Expect = 7e-09
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKG---------ENGTLSREDF 268
MG++ T+ E+LE + T F+ +I RL+ R+ L + + E
Sbjct: 1 MGNK-QTVFTHEQLEAYQDCTFFTRKEIMRLFYRYQDLAPQLVPLDYTTCPDVKVPYELI 59
Query: 269 QRIPELAINPLGDRIINAFFPEGEDQV---NFRGFMRTLAHFRPIEDNEKSKDMNGPEPL 439
+PEL NP RI F +G+ + NF ++ P
Sbjct: 60 GSMPELKDNPFRQRIAQVFSEDGDGHMTLDNFLDMFSVMSEMAP---------------- 103
Query: 440 NSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGD 619
R K ++AF++YD + DD I +L Q + + +S E++ + ++ + EAD D D
Sbjct: 104 --RDLKAYYAFKIYDFNNDDYICAWDLEQTVTKLTRGGLSAEEVSLVCEKVLDEADGDHD 161
Query: 620 SAISFTEFVKVL 655
+S +F ++
Sbjct: 162 GRLSLEDFQNMI 173
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,198,631
Number of extensions: 1357781
Number of successful extensions: 4170
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 4129
Number of HSP's successfully gapped: 26
Length of query: 478
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,802,980
Effective search space: 5506708560
Effective search space used: 5506708560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003057
(1435 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062743.1| calcium-binding protein p22 [Mus musculus]. 381 e-106
Alignment gi|XP_003085153.1| PREDICTED: calcium-binding protein p22-like,... 329 3e-90
Alignment gi|XP_003086063.1| PREDICTED: calcium-binding protein p22-like,... 327 1e-89
Alignment gi|NP_081639.1| calcineurin B homologous protein 2 [Mus musculu... 239 5e-63
Alignment gi|NP_077779.2| calcineurin subunit B type 1 [Mus musculus]. 131 1e-30
Alignment gi|NP_001004025.1| calcineurin subunit B type 2 [Mus musculus]. 121 1e-27
Alignment gi|NP_067319.2| tescalcin [Mus musculus]. 112 7e-25
Alignment gi|NP_001157282.1| hypothetical protein LOC69301 [Mus musculus]. 86 6e-17
Alignment gi|NP_062660.1| calcium and integrin-binding family member 2 [M... 72 1e-12
Alignment gi|NP_036000.1| calcium and integrin-binding protein 1 [Mus mus... 64 2e-10
>ref|NP_062743.1| calcium-binding protein p22 [Mus musculus].
Length = 195
Score = 381 bits (978), Expect = e-106
Identities = 193/195 (98%), Positives = 194/195 (99%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFF EGEDQVNFRGFMRTLAHFRPIEDNEKSKD+NGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 181 EKVDVEQKMSIRFLH 195
>ref|XP_003085153.1| PREDICTED: calcium-binding protein p22-like, partial [Mus
musculus].
Length = 177
Score = 329 bits (844), Expect = 3e-90
Identities = 165/173 (95%), Positives = 168/173 (97%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
FSHSQIT LYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFF EGEDQVNFRG
Sbjct: 5 FSHSQITSLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRG 64
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
FMRTLAHF+PIEDNEKSKD+NGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM
Sbjct: 65 FMRTLAHFQPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 124
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH 700
VGVNISDEQLGSIAD+ IQEADQDGDSA SFTEF KVLEKVDVEQKMSIRFLH
Sbjct: 125 VGVNISDEQLGSIADKIIQEADQDGDSATSFTEFAKVLEKVDVEQKMSIRFLH 177
>ref|XP_003086063.1| PREDICTED: calcium-binding protein p22-like, partial [Mus
musculus].
Length = 180
Score = 327 bits (838), Expect = 1e-89
Identities = 164/173 (94%), Positives = 168/173 (97%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
FSHSQIT LYSRF SLDKGENGTLSREDFQRIPELAINPLG+RIINAFF EGEDQVNFRG
Sbjct: 8 FSHSQITHLYSRFISLDKGENGTLSREDFQRIPELAINPLGNRIINAFFSEGEDQVNFRG 67
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
FMRTLAHF+PIEDNEKSKD+NGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM
Sbjct: 68 FMRTLAHFQPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 127
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH 700
VGVNISDEQLGSIAD+ IQEADQDGDSA SFTEFVKVLEKVDVEQKMSIRFLH
Sbjct: 128 VGVNISDEQLGSIADKIIQEADQDGDSATSFTEFVKVLEKVDVEQKMSIRFLH 180
>ref|NP_081639.1| calcineurin B homologous protein 2 [Mus musculus].
Length = 196
Score = 239 bits (609), Expect = 5e-63
Identities = 118/195 (60%), Positives = 153/195 (78%), Gaps = 1/195 (0%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSR+S + ++E I++ETGFS + + RLY RF +LD+ E G LSR D Q+I LA+N
Sbjct: 1 MGSRSSHIALIPDVEHIRRETGFSQASLLRLYHRFQALDRDEKGFLSRLDLQQIGALAVN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKS-KDMNGPEPLNSRSNKLHFAF 472
PLGDRII++FFP G ++ F GF R LA+FRPI++ + + +D PEPLNSR NKL FAF
Sbjct: 61 PLGDRIIDSFFPNGSQRLYFAGFARVLAYFRPIDEEDATLRDPKQPEPLNSRMNKLRFAF 120
Query: 473 RLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 652
+LYDLD+D KISR+E+LQVLR+MVGV ++DEQL SI DRT+QEAD+DGD A+SF EF K
Sbjct: 121 QLYDLDRDGKISRNEMLQVLRLMVGVQVTDEQLESITDRTVQEADEDGDGAVSFLEFTKS 180
Query: 653 LEKVDVEQKMSIRFL 697
LEK+++EQKMSIR L
Sbjct: 181 LEKMNIEQKMSIRIL 195
>ref|NP_077779.2| calcineurin subunit B type 1 [Mus musculus].
Length = 170
Score = 131 bits (330), Expect = 1e-30
Identities = 73/169 (43%), Positives = 99/169 (58%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F +I RL RF LD +G+LS E+F +PEL NPL R+I+ F +G +V+F+
Sbjct: 15 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ ++ F D E+ KL FAFR+YD+DKD IS EL QVL+MM
Sbjct: 75 FIEGVSQFSVKGDKEQ---------------KLRFAFRIYDMDKDGYISNGELFQVLKMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSI 688
VG N+ D QL I D+TI AD+DGD ISF EF V+ +D+ +KM +
Sbjct: 120 VGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 168
>ref|NP_001004025.1| calcineurin subunit B type 2 [Mus musculus].
Length = 179
Score = 121 bits (304), Expect = 1e-27
Identities = 69/179 (38%), Positives = 101/179 (56%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F +I RL F LD ++G+LS E+F R+PEL NPL R+I+ F +G +V+F
Sbjct: 15 FDQEEIRRLGKSFRKLDLDKSGSLSIEEFMRLPELQQNPLVGRVIDIFDTDGNGEVDFHE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ + F D E+ KL FAFR+YD+D D IS EL QVL+MM
Sbjct: 75 FIVGTSQFSVKGDEEQ---------------KLRFAFRIYDMDNDGFISNGELFQVLKMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH*RTETK 718
VG N+ D QL + D++I D+DGD ISF EF V++ +++ +K+ + H + + K
Sbjct: 120 VGNNLKDWQLQQLVDKSILVLDKDGDGRISFEEFSDVVKTMEIHKKLVVFVEHGQEDLK 178
>ref|NP_067319.2| tescalcin [Mus musculus].
Length = 214
Score = 112 bits (280), Expect = 7e-25
Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 20/207 (9%)
Frame = +2
Query: 149 EELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFF 328
EE+ E++ +TGFS QI +L+ RF L G+ T+ +E+F +P+L +NP+ +I+ AFF
Sbjct: 9 EEVRELEGKTGFSSDQIEQLHRRFKQLS-GDQPTIRKENFNNVPDLELNPIRSKIVRAFF 67
Query: 329 PEGE---------DQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLY 481
D++NF F+ +++FRPI+ + + SR KL F F +Y
Sbjct: 68 DNRNLRKGSSGLADEINFEDFLTIMSYFRPIDTTLGEEQVE-----LSRKEKLKFLFHMY 122
Query: 482 DLDKDDKISRDELLQVLRMMVGVN--ISDEQLGSIADRTIQEA------DQDGD---SAI 628
D D D +I+ +E V+ ++ N I E SIAD + EA + D I
Sbjct: 123 DSDSDGRITLEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCVGQMEPDQVYEGI 182
Query: 629 SFTEFVKVLEKVDVEQKMSIRFLH*RT 709
+F +F+K+ + +D+E KM IRFL+ T
Sbjct: 183 TFEDFLKIWQGIDIETKMHIRFLNMET 209
>ref|NP_001157282.1| hypothetical protein LOC69301 [Mus musculus].
Length = 231
Score = 86.3 bits (212), Expect = 6e-17
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Frame = +2
Query: 155 LEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPE 334
++E+ + FS QI +L+ RF L G+ TL E F I +L NP+ RI+ AFF
Sbjct: 24 IQEVLNKCDFSWEQIKQLHQRFRLLS-GDQPTLQPESFDNILDLEFNPIRSRIVRAFFDN 82
Query: 335 GE---------DQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDL 487
+++ F+ F+ +++FRP+ + +N E +R +K+ F F +YD
Sbjct: 83 RNLGKGTSGLAEEITFQDFLTIISYFRPLRPS-----LNKEEAEQNRKDKMRFLFNMYDQ 137
Query: 488 DKDDKISRDELLQVLRMMVGVNISDEQ------LGSIADRTIQEADQDGD---------S 622
D D I+ E +V+ ++ + E+ +IA ++EA + D
Sbjct: 138 DGDGIITLQEYRRVVESLLSAHPQVERDTVRSVANAIAQGALKEAARASDQPLMAGQQYE 197
Query: 623 AISFTEFVKVLEKVDVEQKMSIRFLH 700
I+F +FVK + +++E KM + FL+
Sbjct: 198 GITFEDFVKTWKSLELEVKMQVSFLN 223
>ref|NP_062660.1| calcium and integrin-binding family member 2 [Mus musculus].
Length = 187
Score = 72.0 bits (175), Expect = 1e-12
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQR------- 274
MG++ T+ +E+L+ + T F+ I +L++RF L L D+++
Sbjct: 1 MGNK-QTIFTEEQLDNYQDCTFFNKKDILKLHARFYELAPN----LVPMDYRKSPIVHVP 55
Query: 275 ------IPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEP 436
+PEL NP +RI+ AF +GE + F F+ D + P
Sbjct: 56 MSLIIQMPELRENPFKERIVEAFSEDGEGNLTFNDFV----------DMFSVLCESAPRE 105
Query: 437 LNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDG 616
L K ++AF++YD + D+ I +++L L + + ++++ + D+ I+EAD DG
Sbjct: 106 L-----KANYAFKIYDFNTDNFICKEDLEMTLARLTKSELEEDEVVLVCDKVIEEADLDG 160
Query: 617 DSAISFTEFVKVLEK 661
D + F +F ++ K
Sbjct: 161 DGKLGFADFEDMIAK 175
>ref|NP_036000.1| calcium and integrin-binding protein 1 [Mus musculus].
Length = 191
Score = 64.3 bits (155), Expect = 2e-10
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTL-----SREDFQRI- 277
MG S L + E L E + T + +I + RF L E T+ +R F++I
Sbjct: 1 MGGSGSRLSK-ELLAEYQDLTFLTKQEILLAHRRFCELLPPEQRTVEESLHTRVSFEQIL 59
Query: 278 --PELAINPLGDRIINAFFPEG-EDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSR 448
PEL NP +RI F D ++F F+ L+ F D P+
Sbjct: 60 SLPELKANPFKERICMVFSTSPTRDSLSFEDFLDLLSVF---------SDTATPDI---- 106
Query: 449 SNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG----VNISDEQLGSIADRTIQEADQDG 616
K H+AFR++D D D + R++L Q++ + G +S ++ + D ++E+D D
Sbjct: 107 --KSHYAFRIFDFDDDGTLDREDLSQLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 164
Query: 617 DSAISFTEFVKVLEK 661
D I+ +EF V+ +
Sbjct: 165 DGTINLSEFQHVISR 179
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,470,409
Number of extensions: 1153882
Number of successful extensions: 3656
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3614
Number of HSP's successfully gapped: 24
Length of query: 478
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 373
Effective length of database: 12,463,779
Effective search space: 4648989567
Effective search space used: 4648989567
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003057
(1435 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361456.1| PREDICTED: calcium-binding protein p22-like ... 385 e-107
Alignment gi|XP_003353445.1| PREDICTED: hypothetical protein LOC100625988... 152 3e-37
Alignment gi|XP_003121632.2| PREDICTED: calcium-binding protein p22-like ... 152 6e-37
Alignment gi|XP_003125129.2| PREDICTED: calcineurin subunit B type 1-like... 131 8e-31
Alignment gi|XP_003354840.1| PREDICTED: calcineurin subunit B type 1-like... 131 8e-31
Alignment gi|XP_003360852.1| PREDICTED: calcineurin subunit B type 2-like... 115 6e-26
Alignment gi|XP_003122096.1| PREDICTED: calcineurin subunit B type 2-like... 115 6e-26
Alignment gi|XP_003132947.1| PREDICTED: hypothetical protein LOC100155189... 110 2e-24
Alignment gi|XP_001927282.1| PREDICTED: calcium and integrin-binding fami... 71 1e-12
Alignment gi|XP_001926489.3| PREDICTED: calcium and integrin-binding prot... 64 3e-10
>ref|XP_003361456.1| PREDICTED: calcium-binding protein p22-like [Sus scrofa].
Length = 195
Score = 385 bits (990), Expect = e-107
Identities = 195/195 (100%), Positives = 195/195 (100%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR
Sbjct: 61 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 120
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Query: 656 EKVDVEQKMSIRFLH 700
EKVDVEQKMSIRFLH
Sbjct: 181 EKVDVEQKMSIRFLH 195
>ref|XP_003353445.1| PREDICTED: hypothetical protein LOC100625988 [Sus scrofa].
Length = 239
Score = 152 bits (385), Expect = 3e-37
Identities = 82/111 (73%), Positives = 82/111 (73%)
Frame = +2
Query: 5 NTALSVFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGSRASTLLRDEELEEIKKETGF 184
NTALSVFD MGSRASTLLRDEELEEIKKETGF
Sbjct: 129 NTALSVFDPGPSSPSSLSPAAAVASGAPAPGGAPGLVMGSRASTLLRDEELEEIKKETGF 188
Query: 185 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEG 337
SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEG
Sbjct: 189 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEG 239
>ref|XP_003121632.2| PREDICTED: calcium-binding protein p22-like [Sus scrofa].
Length = 120
Score = 152 bits (383), Expect = 6e-37
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = +2
Query: 467 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 646
AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV
Sbjct: 43 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 102
Query: 647 KVLEKVDVEQKMSIRFLH 700
KVLEKVDVEQKMSIRFLH
Sbjct: 103 KVLEKVDVEQKMSIRFLH 120
>ref|XP_003125129.2| PREDICTED: calcineurin subunit B type 1-like [Sus scrofa].
Length = 176
Score = 131 bits (330), Expect = 8e-31
Identities = 73/169 (43%), Positives = 99/169 (58%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F +I RL RF LD +G+LS E+F +PEL NPL R+I+ F +G +V+F+
Sbjct: 21 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKE 80
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ ++ F D E+ KL FAFR+YD+DKD IS EL QVL+MM
Sbjct: 81 FIEGVSQFSVKGDKEQ---------------KLRFAFRIYDMDKDGYISNGELFQVLKMM 125
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSI 688
VG N+ D QL I D+TI AD+DGD ISF EF V+ +D+ +KM +
Sbjct: 126 VGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 174
>ref|XP_003354840.1| PREDICTED: calcineurin subunit B type 1-like [Sus scrofa].
Length = 170
Score = 131 bits (330), Expect = 8e-31
Identities = 78/191 (40%), Positives = 107/191 (56%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 295
+G + LRD + +EIK RL RF LD +G+LS E+F +PEL N
Sbjct: 4 VGKSYRSQLRDIDADEIK-----------RLGKRFKKLDLDNSGSLSVEEFMSLPELQQN 52
Query: 296 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFR 475
PL R+I+ F +G +V+F+ F+ ++ F D E+ KL FAFR
Sbjct: 53 PLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQ---------------KLRFAFR 97
Query: 476 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 655
+YD+DKD IS EL QVL+MMVG N+ D QL I D+TI AD+DGD ISF EF V+
Sbjct: 98 IYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157
Query: 656 EKVDVEQKMSI 688
+D+ +KM +
Sbjct: 158 GGLDIHKKMVV 168
>ref|XP_003360852.1| PREDICTED: calcineurin subunit B type 2-like [Sus scrofa].
Length = 170
Score = 115 bits (288), Expect = 6e-26
Identities = 63/169 (37%), Positives = 92/169 (54%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F ++I +L RF +D +GTL+ ++ +P L +NPL R+ + F +G +V+F+
Sbjct: 15 FDQNEIKQLSKRFKKVDLDSSGTLTMKELMSLPGLQVNPLVQRVFDIFDTDGNGEVDFKE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ + F D E+ KL FAF +YD+DKD IS EL QVL MM
Sbjct: 75 FLVGTSQFSVKGDKEQ---------------KLRFAFSIYDMDKDGYISNGELFQVLNMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSI 688
VG N+ D QL + D+TI D+DGD ISF EF V + V +K+ +
Sbjct: 120 VGDNLKDWQLQQLVDKTIIALDKDGDGKISFHEFCAVARNLKVHEKLGV 168
>ref|XP_003122096.1| PREDICTED: calcineurin subunit B type 2-like [Sus scrofa].
Length = 170
Score = 115 bits (288), Expect = 6e-26
Identities = 63/169 (37%), Positives = 92/169 (54%)
Frame = +2
Query: 182 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRG 361
F ++I +L RF +D +GTL+ ++ +P L +NPL R+ + F +G +V+F+
Sbjct: 15 FDQNEIKQLSKRFKKVDLDSSGTLTMKELMSLPGLQVNPLVQRVFDIFDTDGNGEVDFKE 74
Query: 362 FMRTLAHFRPIEDNEKSKDMNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 541
F+ + F D E+ KL FAF +YD+DKD IS EL QVL MM
Sbjct: 75 FLVGTSQFSVKGDKEQ---------------KLRFAFSIYDMDKDGYISNGELFQVLNMM 119
Query: 542 VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSI 688
VG N+ D QL + D+TI D+DGD ISF EF V + V +K+ +
Sbjct: 120 VGDNLKDWQLQQLVDKTIIALDKDGDGKISFHEFCAVARNLKVHEKLGV 168
>ref|XP_003132947.1| PREDICTED: hypothetical protein LOC100155189 [Sus scrofa].
Length = 732
Score = 110 bits (275), Expect = 2e-24
Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 20/217 (9%)
Frame = +2
Query: 119 GSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINP 298
G+ + EE+ E+ +TGFS QI +L+ RF L G+ T+ +E+F +P+L +NP
Sbjct: 517 GTMGAAHSASEEVRELVGKTGFSSDQIEQLHRRFKQLS-GDQPTIRKENFNNVPDLELNP 575
Query: 299 LGDRIINAFFPEGE---------DQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSRS 451
+ +I+ AFF D++NF F+ +++FRPI+ M+ + R
Sbjct: 576 IRSKIVRAFFDNRNLRKGTSGLADEINFEDFLTIMSYFRPIDIT-----MDEEQVQLCRK 630
Query: 452 NKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVN--ISDEQLGSIADRTIQEA------D 607
KL F F +YD D D +I+ +E V+ ++ N I E SIAD + EA
Sbjct: 631 EKLRFLFHMYDSDSDGRITLEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCVGQ 690
Query: 608 QDGD---SAISFTEFVKVLEKVDVEQKMSIRFLH*RT 709
+ D I+F +F+K+ + +D+E KM +RFL+ T
Sbjct: 691 MEPDQVYEGITFDDFLKIWQGIDIETKMHVRFLNMET 727
>ref|XP_001927282.1| PREDICTED: calcium and integrin-binding family member 2 isoform 1
[Sus scrofa].
Length = 187
Score = 71.2 bits (173), Expect = 1e-12
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQR------- 274
MG++ T+ +E+L+ + T F+ I +L++RF L L D+++
Sbjct: 1 MGNK-QTIFTEEQLDNYQDCTFFNKKDILKLHARFYELAPN----LVPMDYRKSPIVHVP 55
Query: 275 ------IPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEP 436
+PEL NP +RI+ AF +GE + F F+ D + P
Sbjct: 56 MSLIIQMPELRENPFKERIVEAFSEDGEGNLTFNDFV----------DMFSVLCESAPRE 105
Query: 437 LNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDG 616
L K ++AF++YD + D+ I +++L L + + ++++ + D+ I+EAD DG
Sbjct: 106 L-----KANYAFKIYDFNTDNFICKEDLELTLARLTKSELDEDEVVLVCDKVIEEADLDG 160
Query: 617 DSAISFTEFVKVLEK 661
D + F +F ++ K
Sbjct: 161 DGKLGFADFEDMIAK 175
>ref|XP_001926489.3| PREDICTED: calcium and integrin-binding protein 1 [Sus scrofa].
Length = 188
Score = 63.5 bits (153), Expect = 3e-10
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 13/195 (6%)
Frame = +2
Query: 116 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENG--------TLSREDFQ 271
MG S L + E L E + T + +I + RF L E+ +S E
Sbjct: 1 MGGSGSRLSK-ELLAEYQDLTFLTKQEILLAHRRFCELLPQEHRGVEESLQVRVSLEQIL 59
Query: 272 RIPELAINPLGDRIINAFFPEG-EDQVNFRGFMRTLAHFRPIEDNEKSKDMNGPEPLNSR 448
+PEL NP +RI F D ++F F+ L+ F D P+
Sbjct: 60 SLPELKANPFKERICKVFSTSPTRDSLSFEDFLDLLSVF---------SDTATPDI---- 106
Query: 449 SNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG----VNISDEQLGSIADRTIQEADQDG 616
K H+AFR++D D D ++R++L Q++ + G +S ++ + D ++E+D D
Sbjct: 107 --KSHYAFRIFDFDDDGTLNREDLSQLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 164
Query: 617 DSAISFTEFVKVLEK 661
D I+ +EF V+ +
Sbjct: 165 DGTINLSEFQHVISR 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,729,748
Number of extensions: 859507
Number of successful extensions: 2789
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 29
Length of query: 478
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 375
Effective length of database: 8,779,541
Effective search space: 3292327875
Effective search space used: 3292327875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003057
(1435 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1509 0.0
gb|JH118758.1| Sus scrofa unplaced genomic scaffold ChrUScaf2272 1501 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1509 bits (761), Expect = 0.0
Identities = 784/789 (99%), Gaps = 2/789 (0%)
Strand = Plus / Minus
Query: 648 aggttttagagaaggtggatgtagaacagaaaatgagcatccgatttcttcactgaagga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145223112 aggttttagagaaggtggatgtagaacagaaaatgagcatccgatttcttcactgaagga 145223053
Query: 708 ctgagaccaaactgttccttgctttctagtatttaagaactggaacttgaaagtcctcct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145223052 ctgagaccaaactgttccttgctttctagtatttaagaactggaacttgaaagtcctcct 145222993
Query: 768 ttccaccagccccacctccactccatcgttccccttctccagagtactgctgctgttgca 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222992 ttccaccagccccacctccactccatcgttccccttctccagagtactgctgctgttgca 145222933
Query: 828 tgacacccccaagtatgttccatcaacacaaacctgcctttggtgtataaacagggcatt 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222932 tgacacccccaagtatgttccatcaacacaaacctgcctttggtgtataaacagggcatt 145222873
Query: 888 acagaatggtacacccagtttctttctgtcagtatcattcgctggaactctccatttcta 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222872 acagaatggtacacccagtttctttctgtcagtatcattcgctggaactctccatttcta 145222813
Query: 948 aatatcatctccccctgttctgctgctgaatgccatgtgtccatccagtctgagaaagtg 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222812 aatatcatctccccctgttctgctgctgaatgccatgtgtccatccagtctgagaaagtg 145222753
Query: 1008 agagggattcctgccaagaaccagccagccaagctctttgactggatgtgggctgtagcc 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222752 agagggattcctgccaagaaccagccagccaagctctttgactggatgtgggctgtagcc 145222693
Query: 1068 aggcttccttccctccagctaggctttggcatgctcctttacccttttttatacatcctt 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222692 aggcttccttccctccagctaggctttggcatgctcctttacccttttttatacatcctt 145222633
Query: 1128 tgcttcctacttcttgctcacttcacacactattcacttaaatcttcccttaatctctca 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222632 tgcttcctacttcttgctcacttcacacactattcacttaaatcttcccttaatctctca 145222573
Query: 1188 ctcttccctgcttttttatttagcttcccgtcccctctattctacttggcatcccaagct 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145222572 ctcttccctgcttttttatttagcttcccgtcccctctattctacttggcatcccaagct 145222513
Query: 1248 ggtgtctttctgacttggcagtttatatcagtggtccggcagtttttactctaccttcac 1307
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 145222512 ggtgtctttctgacttggcagtttatatcagtggtccggcagtttttaatctaccttcac 145222453
Query: 1308 tcttaaatgggtctctgggatgttgcctctccaggagcttttcagtgacctacacttcgc 1367
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 145222452 tcttaaatgggtctctgggatgttgcctctccaggagcttttcagtgaccaacacttcgc 145222393
Query: 1368 tctgaagaaatgt-accatctcttggtcccctgcattctgctctgtcatcaaggggctgt 1426
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 145222392 tctgaag-aatgtaaccatctcttggtcccctgcattctgctctgtcatcaaagggctgt 145222334
Query: 1427 tggttggag 1435
|||||||||
Sbjct: 145222333 tggttggag 145222325
Score = 1501 bits (757), Expect = 0.0
Identities = 783/789 (99%), Gaps = 2/789 (0%)
Strand = Plus / Minus
Query: 648 aggttttagagaaggtggatgtagaacagaaaatgagcatccgatttcttcactgaagga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096683 aggttttagagaaggtggatgtagaacagaaaatgagcatccgatttcttcactgaagga 145096624
Query: 708 ctgagaccaaactgttccttgctttctagtatttaagaactggaacttgaaagtcctcct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096623 ctgagaccaaactgttccttgctttctagtatttaagaactggaacttgaaagtcctcct 145096564
Query: 768 ttccaccagccccacctccactccatcgttccccttctccagagtactgctgctgttgca 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096563 ttccaccagccccacctccactccatcgttccccttctccagagtactgctgctgttgca 145096504
Query: 828 tgacacccccaagtatgttccatcaacacaaacctgcctttggtgtataaacagggcatt 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096503 tgacacccccaagtatgttccatcaacacaaacctgcctttggtgtataaacagggcatt 145096444
Query: 888 acagaatggtacacccagtttctttctgtcagtatcattcgctggaactctccatttcta 947
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 145096443 acagaatggtacacccagtttctttctgtcagtatcattcgctggaaatctccatttcta 145096384
Query: 948 aatatcatctccccctgttctgctgctgaatgccatgtgtccatccagtctgagaaagtg 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096383 aatatcatctccccctgttctgctgctgaatgccatgtgtccatccagtctgagaaagtg 145096324
Query: 1008 agagggattcctgccaagaaccagccagccaagctctttgactggatgtgggctgtagcc 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096323 agagggattcctgccaagaaccagccagccaagctctttgactggatgtgggctgtagcc 145096264
Query: 1068 aggcttccttccctccagctaggctttggcatgctcctttacccttttttatacatcctt 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096263 aggcttccttccctccagctaggctttggcatgctcctttacccttttttatacatcctt 145096204
Query: 1128 tgcttcctacttcttgctcacttcacacactattcacttaaatcttcccttaatctctca 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096203 tgcttcctacttcttgctcacttcacacactattcacttaaatcttcccttaatctctca 145096144
Query: 1188 ctcttccctgcttttttatttagcttcccgtcccctctattctacttggcatcccaagct 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096143 ctcttccctgcttttttatttagcttcccgtcccctctattctacttggcatcccaagct 145096084
Query: 1248 ggtgtctttctgacttggcagtttatatcagtggtccggcagtttttactctaccttcac 1307
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 145096083 ggtgtctttctgacttggcagtttatatcagtggtccggcagtttttaatctaccttcac 145096024
Query: 1308 tcttaaatgggtctctgggatgttgcctctccaggagcttttcagtgacctacacttcgc 1367
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 145096023 tcttaaatgggtctctgggatgttgcctctccaggagcttttcagtgaccaacacttcgc 145095964
Query: 1368 tctgaagaaatgt-accatctcttggtcccctgcattctgctctgtcatcaaggggctgt 1426
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 145095963 tctgaag-aatgtaaccatctcttggtcccctgcattctgctctgtcatcaaagggctgt 145095905
Query: 1427 tggttggag 1435
|||||||||
Sbjct: 145095904 tggttggag 145095896
Score = 345 bits (174), Expect = 4e-92
Identities = 177/178 (99%)
Strand = Plus / Minus
Query: 5 aatactgccctctccgtttttgaccccggtccttcctccccttcttccctctctcctgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145259547 aatactgccctctccgtttttgaccccggtccttcctccccttcttccctctctcctgca 145259488
Query: 65 gccgctgtcgcttcaggcgcccctgctcccggaggagctcccggtttagtgatggggtcc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 145259487 gccgctgtcgcttcaggcgcccctgctcccggaggagctcccggcttagtgatggggtcc 145259428
Query: 125 cgggcctccacgttactgcgggacgaagagctcgaggagatcaagaaggagactggct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145259427 cgggcctccacgttactgcgggacgaagagctcgaggagatcaagaaggagactggct 145259370
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 336 gagaggaccaggtaaacttccgtggcttcatgagaactttggctcatttccgacccattg 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145237237 gagaggaccaggtaaacttccgtggcttcatgagaactttggctcatttccgacccattg 145237178
Query: 396 aggataatgaaaagagcaaagatatgaatggaccagaaccactcaatagccgaagcaaca 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145237177 aggataatgaaaagagcaaagatatgaatggaccagaaccactcaatagccgaagcaaca 145237118
Query: 456 aactgcact 464
|||||||||
Sbjct: 145237117 aactgcact 145237109
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 525 aggtgctacgcatgatggttggggtgaatatctcagatgagcagctgggcagcatcgcag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096961 aggtgctacgcatgatggttggggtgaatatctcagatgagcagctgggcagcatcgcag 145096902
Query: 585 acaggaccatccaggaggctgaccaggatggggacagcgccatctctttcacggaatttg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145096901 acaggaccatccaggaggctgaccaggatggggacagcgccatctctttcacggaatttg 145096842
Query: 645 ttaaggt 651
|||||||
Sbjct: 145096841 ttaaggt 145096835
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 525 aggtgctacgcatgatggttggggtgaatatctcagatgagcagctgggcagcatcgcag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145223389 aggtgctacgcatgatggttggggtgaatatctcagatgagcagctgggcagcatcgcag 145223330
Query: 585 acaggaccatccaggaggctgaccaggatggggacagcgccatctctttcacggaatttg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145223329 acaggaccatccaggaggctgaccaggatggggacagcgccatctctttcacggaatttg 145223270
Query: 645 ttaaggt 651
|||||||
Sbjct: 145223269 ttaaggt 145223263
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 253 cagccgggaagatttccagcggattccagaacttgccatcaacccattaggggaccggat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145114283 cagccgggaagatttccagcggattccagaacttgccatcaacccattaggggaccggat 145114224
Query: 313 catcaatgctttctttccagaagg 336
||||||||||||||||||||||||
Sbjct: 145114223 catcaatgctttctttccagaagg 145114200
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 253 cagccgggaagatttccagcggattccagaacttgccatcaacccattaggggaccggat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145242475 cagccgggaagatttccagcggattccagaacttgccatcaacccattaggggaccggat 145242416
Query: 313 catcaatgctttctttccagaagg 336
||||||||||||||||||||||||
Sbjct: 145242415 catcaatgctttctttccagaagg 145242392
Score = 145 bits (73), Expect = 8e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 183 tttcccacagtcagatcacccgcctctacagccggttcaccagcctggacaaaggagaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145122656 tttcccacagtcagatcacccgcctctacagccggttcaccagcctggacaaaggagaga 145122597
Query: 243 atgggactctcag 255
|||||||||||||
Sbjct: 145122596 atgggactctcag 145122584
Score = 145 bits (73), Expect = 8e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 183 tttcccacagtcagatcacccgcctctacagccggttcaccagcctggacaaaggagaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145250816 tttcccacagtcagatcacccgcctctacagccggttcaccagcctggacaaaggagaga 145250757
Query: 243 atgggactctcag 255
|||||||||||||
Sbjct: 145250756 atgggactctcag 145250744
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 465 ttgcttttcgactgtatgacttggataaagatgacaagatctcccgtgacgagctgttac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145101434 ttgcttttcgactgtatgacttggataaagatgacaagatctcccgtgacgagctgttac 145101375
Query: 525 aggt 528
||||
Sbjct: 145101374 aggt 145101371
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 465 ttgcttttcgactgtatgacttggataaagatgacaagatctcccgtgacgagctgttac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145227864 ttgcttttcgactgtatgacttggataaagatgacaagatctcccgtgacgagctgttac 145227805
Query: 525 aggt 528
||||
Sbjct: 145227804 aggt 145227801
>gb|JH118758.1| Sus scrofa unplaced genomic scaffold ChrUScaf2272
Length = 126293
Score = 1501 bits (757), Expect = 0.0
Identities = 783/789 (99%), Gaps = 2/789 (0%)
Strand = Plus / Minus
Query: 648 aggttttagagaaggtggatgtagaacagaaaatgagcatccgatttcttcactgaagga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42284 aggttttagagaaggtggatgtagaacagaaaatgagcatccgatttcttcactgaagga 42225
Query: 708 ctgagaccaaactgttccttgctttctagtatttaagaactggaacttgaaagtcctcct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42224 ctgagaccaaactgttccttgctttctagtatttaagaactggaacttgaaagtcctcct 42165
Query: 768 ttccaccagccccacctccactccatcgttccccttctccagagtactgctgctgttgca 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42164 ttccaccagccccacctccactccatcgttccccttctccagagtactgctgctgttgca 42105
Query: 828 tgacacccccaagtatgttccatcaacacaaacctgcctttggtgtataaacagggcatt 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42104 tgacacccccaagtatgttccatcaacacaaacctgcctttggtgtataaacagggcatt 42045
Query: 888 acagaatggtacacccagtttctttctgtcagtatcattcgctggaactctccatttcta 947
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 42044 acagaatggtacacccagtttctttctgtcagtatcattcgctggaaatctccatttcta 41985
Query: 948 aatatcatctccccctgttctgctgctgaatgccatgtgtccatccagtctgagaaagtg 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41984 aatatcatctccccctgttctgctgctgaatgccatgtgtccatccagtctgagaaagtg 41925
Query: 1008 agagggattcctgccaagaaccagccagccaagctctttgactggatgtgggctgtagcc 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41924 agagggattcctgccaagaaccagccagccaagctctttgactggatgtgggctgtagcc 41865
Query: 1068 aggcttccttccctccagctaggctttggcatgctcctttacccttttttatacatcctt 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41864 aggcttccttccctccagctaggctttggcatgctcctttacccttttttatacatcctt 41805
Query: 1128 tgcttcctacttcttgctcacttcacacactattcacttaaatcttcccttaatctctca 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41804 tgcttcctacttcttgctcacttcacacactattcacttaaatcttcccttaatctctca 41745
Query: 1188 ctcttccctgcttttttatttagcttcccgtcccctctattctacttggcatcccaagct 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41744 ctcttccctgcttttttatttagcttcccgtcccctctattctacttggcatcccaagct 41685
Query: 1248 ggtgtctttctgacttggcagtttatatcagtggtccggcagtttttactctaccttcac 1307
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 41684 ggtgtctttctgacttggcagtttatatcagtggtccggcagtttttaatctaccttcac 41625
Query: 1308 tcttaaatgggtctctgggatgttgcctctccaggagcttttcagtgacctacacttcgc 1367
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 41624 tcttaaatgggtctctgggatgttgcctctccaggagcttttcagtgaccaacacttcgc 41565
Query: 1368 tctgaagaaatgt-accatctcttggtcccctgcattctgctctgtcatcaaggggctgt 1426
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 41564 tctgaag-aatgtaaccatctcttggtcccctgcattctgctctgtcatcaaagggctgt 41506
Query: 1427 tggttggag 1435
|||||||||
Sbjct: 41505 tggttggag 41497
Score = 345 bits (174), Expect = 4e-92
Identities = 177/178 (99%)
Strand = Plus / Minus
Query: 5 aatactgccctctccgtttttgaccccggtccttcctccccttcttccctctctcctgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71918 aatactgccctctccgtttttgaccccggtccttcctccccttcttccctctctcctgca 71859
Query: 65 gccgctgtcgcttcaggcgcccctgctcccggaggagctcccggtttagtgatggggtcc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 71858 gccgctgtcgcttcaggcgcccctgctcccggaggagctcccggcttagtgatggggtcc 71799
Query: 125 cgggcctccacgttactgcgggacgaagagctcgaggagatcaagaaggagactggct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71798 cgggcctccacgttactgcgggacgaagagctcgaggagatcaagaaggagactggct 71741
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 336 gagaggaccaggtaaacttccgtggcttcatgagaactttggctcatttccgacccattg 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55212 gagaggaccaggtaaacttccgtggcttcatgagaactttggctcatttccgacccattg 55153
Query: 396 aggataatgaaaagagcaaagatatgaatggaccagaaccactcaatagccgaagcaaca 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55152 aggataatgaaaagagcaaagatatgaatggaccagaaccactcaatagccgaagcaaca 55093
Query: 456 aactgcact 464
|||||||||
Sbjct: 55092 aactgcact 55084
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 525 aggtgctacgcatgatggttggggtgaatatctcagatgagcagctgggcagcatcgcag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42561 aggtgctacgcatgatggttggggtgaatatctcagatgagcagctgggcagcatcgcag 42502
Query: 585 acaggaccatccaggaggctgaccaggatggggacagcgccatctctttcacggaatttg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42501 acaggaccatccaggaggctgaccaggatggggacagcgccatctctttcacggaatttg 42442
Query: 645 ttaaggt 651
|||||||
Sbjct: 42441 ttaaggt 42435
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 253 cagccgggaagatttccagcggattccagaacttgccatcaacccattaggggaccggat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60401 cagccgggaagatttccagcggattccagaacttgccatcaacccattaggggaccggat 60342
Query: 313 catcaatgctttctttccagaagg 336
||||||||||||||||||||||||
Sbjct: 60341 catcaatgctttctttccagaagg 60318
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 465 ttgcttttcgactgtatgacttggataaagatgacaagatctcccgtgacgagctgttac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46870 ttgcttttcgactgtatgacttggataaagatgacaagatctcccgtgacgagctgttac 46811
Query: 525 aggt 528
||||
Sbjct: 46810 aggt 46807
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,589,819
Number of extensions: 403
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 18
Length of query: 1435
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1414
Effective length of database: 2,808,413,156
Effective search space: 3971096202584
Effective search space used: 3971096202584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)