Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003071
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029688.1| snRNA-activating protein complex subunit 2 [... 460 e-130
>ref|NP_001029688.1| snRNA-activating protein complex subunit 2 [Bos taurus].
Length = 341
Score = 460 bits (1184), Expect = e-130
Identities = 241/327 (73%), Positives = 259/327 (79%), Gaps = 13/327 (3%)
Frame = +1
Query: 73 YLGEVTRPAAWSAREKXXXXXXXXXXXGQPEPDAAELARELSGRSDAEVQDFLRQLKRRV 252
YL EVT PAAW A EK GQPE DAAELAREL GRS+ E+QDF+RQLK RV
Sbjct: 14 YLVEVTGPAAWRASEKRQLLRLLQARQGQPELDAAELARELPGRSNTEIQDFIRQLKGRV 73
Query: 253 AREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEP 432
AREAIQR++PGGP+G RR E Q PAPIEVWMDLAEK+TGPLEE+LTVAFSQVL IAATEP
Sbjct: 74 AREAIQRIHPGGPKGPRRWETQTPAPIEVWMDLAEKITGPLEEALTVAFSQVLAIAATEP 133
Query: 433 ISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPEAPGPAP-------------KVQGPAPE 573
+SLLHS P KPTQA GK LLL APGGQED GPEA PAP K GPAPE
Sbjct: 134 VSLLHSVPSKPTQACGKPLLLRAPGGQEDLGPEASSPAPEAPGGGEVPGSTLKTPGPAPE 193
Query: 574 ASSESLAGPSAEGEFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELSRL 753
ASSESLAG SAEG+FSVDFEKIY YLSS+S GPELSAAESAVVLDLLMALPEELSRL
Sbjct: 194 ASSESLAGQSAEGDFSVDFEKIYTYLSSVSHGGQGPELSAAESAVVLDLLMALPEELSRL 253
Query: 754 PCAALVEHMTDMYLHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGPSE 933
PCA LV+HM+ MY HL APQ D A+G L SG ED G+GSRGQEE GQA+PQAPENAG S+
Sbjct: 254 PCATLVQHMSGMYRHLTAPQRDLASGGLASGTEDSGAGSRGQEETGQASPQAPENAGSSQ 313
Query: 934 AISTWQAAGVCPLNPFLVPLELLGQAA 1014
IS+WQAAGVCPLNPFLVPLELL Q A
Sbjct: 314 PISSWQAAGVCPLNPFLVPLELLRQVA 340
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.312 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,128,443
Number of extensions: 1402760
Number of successful extensions: 9640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9396
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003071
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854344.1| PREDICTED: similar to small nuclear RNA activat... 469 e-132
>ref|XP_854344.1| PREDICTED: similar to small nuclear RNA activating complex,
polypeptide 2, 45kDa [Canis familiaris].
Length = 364
Score = 469 bits (1206), Expect = e-132
Identities = 243/333 (72%), Positives = 264/333 (79%), Gaps = 1/333 (0%)
Frame = +1
Query: 31 GMKXXXXXXXXXXXYLGEVTRPAAWSAREKXXXXXXXXXXXGQPEPDAAELARELSGRSD 210
GMK YLGEVT PAAWSAREK GQPEPDAAELAREL GRS+
Sbjct: 36 GMKPPQRRRTAPARYLGEVTGPAAWSAREKRQLLRLLQARQGQPEPDAAELARELPGRSE 95
Query: 211 AEVQDFLRQLKRRVAREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLT 390
EV+DFLRQLK R REA+QR++PG RR+E Q PAPIEVWMDLAEK+TGPLEE+LT
Sbjct: 96 TEVRDFLRQLKGRAVREALQRLHPGP----RRRETQTPAPIEVWMDLAEKITGPLEEALT 151
Query: 391 VAFSQVLTIAATEPISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPEAPGPAPKVQGPAP 570
VAFSQV IAATEP+SLLHSKPPKPTQARGK LLL A GGQ++ PE PGPAPK GPAP
Sbjct: 152 VAFSQVQPIAATEPMSLLHSKPPKPTQARGKLLLLDASGGQKEASPETPGPAPKPDGPAP 211
Query: 571 EASSESLAGPS-AEGEFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELS 747
EASSE LA PS AEG+FSVDFEKIYKYLSS+SR CHGPELSAAE+AVVLDLLMALPEEL
Sbjct: 212 EASSEFLADPSSAEGDFSVDFEKIYKYLSSVSRRCHGPELSAAEAAVVLDLLMALPEELQ 271
Query: 748 RLPCAALVEHMTDMYLHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGP 927
RLPC ALV+HM+DMY+HL APQPD A+ LG AED G+ S QE AGQA PQA E+ GP
Sbjct: 272 RLPCDALVKHMSDMYVHLTAPQPDPASEGLGPAAEDAGTSSSRQEAAGQAPPQASESTGP 331
Query: 928 SEAISTWQAAGVCPLNPFLVPLELLGQAATPAR 1026
+E S WQAAGVCPLNPFLVPLE LGQAATPAR
Sbjct: 332 AEPRSPWQAAGVCPLNPFLVPLEFLGQAATPAR 364
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.312 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,877,556
Number of extensions: 1438165
Number of successful extensions: 9400
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9235
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003071
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003074.1| snRNA-activating protein complex subunit 2 [Hom... 440 e-124
>ref|NP_003074.1| snRNA-activating protein complex subunit 2 [Homo sapiens].
Length = 334
Score = 440 bits (1132), Expect = e-124
Identities = 232/325 (71%), Positives = 254/325 (78%), Gaps = 7/325 (2%)
Frame = +1
Query: 73 YLGEVTRPAAWSAREKXXXXXXXXXXXGQPEPDAAELARELSGRSDAEVQDFLRQLKRRV 252
YLGEVT PA WSAREK GQPEPDA ELAREL GRS+AE++ FL+QLK RV
Sbjct: 14 YLGEVTGPATWSAREKRQLVRLLQARQGQPEPDATELARELRGRSEAEIRVFLQQLKGRV 73
Query: 253 AREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEP 432
AREAIQ+++PGG QG RR+EAQPPAPIEVW DLAEK+TGPLEE+L VAFSQVLTIAATEP
Sbjct: 74 AREAIQKVHPGGLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAVAFSQVLTIAATEP 133
Query: 433 ISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPE-------APGPAPKVQGPAPEASSESL 591
++LLHSKPPKPTQARGK LLLSAPGGQED PE AP AP+ PAPE SES
Sbjct: 134 VTLLHSKPPKPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPRTPDPAPEKPSESS 193
Query: 592 AGPSAEGEFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELSRLPCAALV 771
AGPS E +F+VDFEKIYKYLSS+SRS PELSAAESAVVLDLLM+LPEEL LPC ALV
Sbjct: 194 AGPSTEEDFAVDFEKIYKYLSSVSRSGRSPELSAAESAVVLDLLMSLPEELPLLPCTALV 253
Query: 772 EHMTDMYLHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGPSEAISTWQ 951
EHMT+ YL L APQP A GSLG AE G+GS+ EE TP A E A SE S WQ
Sbjct: 254 EHMTETYLRLTAPQPIPAGGSLGPAAEGDGAGSKAPEE----TPPATEKAEHSELKSPWQ 309
Query: 952 AAGVCPLNPFLVPLELLGQAATPAR 1026
AAG+CPLNPFLVPLELLG+AATPAR
Sbjct: 310 AAGICPLNPFLVPLELLGRAATPAR 334
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.312 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,849,237
Number of extensions: 1398705
Number of successful extensions: 8931
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8745
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003071
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598729.1| snRNA-activating protein complex subunit 2 [Mus... 355 4e-98
>ref|NP_598729.1| snRNA-activating protein complex subunit 2 [Mus musculus].
Length = 359
Score = 355 bits (910), Expect = 4e-98
Identities = 198/349 (56%), Positives = 230/349 (65%), Gaps = 31/349 (8%)
Frame = +1
Query: 73 YLGEVTRPAAWSAREKXXXXXXXXXXXGQPEPDAAELARELSGRSDAEVQDFLRQLKRRV 252
Y+GE T P AWS RE GQPEPDAAELA+EL GRS+AE+ F++QLK RV
Sbjct: 14 YVGEATGPTAWSPREMRHLLRLLQARRGQPEPDAAELAQELRGRSEAEICRFIQQLKGRV 73
Query: 253 AREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEP 432
REAIQ+M PGG +G R Q PAP+EVWMDLAEK+TGP+EE+LT AFSQVLTIAA EP
Sbjct: 74 VREAIQKMQPGGREGPRHQGTPLPAPVEVWMDLAEKLTGPMEEALTAAFSQVLTIAAAEP 133
Query: 433 ISLLHSKPPKPTQARGKQLL-LSAPGGQEDKGPEAPGPAP-------------------- 549
+SLLHS+P KPT+ARGK L+ LS GQ+D E GP P
Sbjct: 134 LSLLHSRPGKPTKARGKALVFLSNQDGQKDPASEGSGPVPMTAADPTREASVSDPKASGA 193
Query: 550 ---------KVQGPAPEASSESLAGPSAEGEFSVDFEKIYKYLSSISRSCHGPELSAAES 702
+V P P+A ++SLAG S E + +VDFEKIYKYLS SR HGPELSAAES
Sbjct: 194 NPETSGLASEVTVPDPDAPTKSLAGSSTERDLAVDFEKIYKYLSFSSRGGHGPELSAAES 253
Query: 703 AVVLDLLMALPEELSRLPCAALVEHMTDMYLHLMAPQPD-SANGSLGSGAEDGGSGSRGQ 879
AVVL+LLMALPEELS LPC AL+EHMT Y LMAPQ G EDGG+GS G
Sbjct: 254 AVVLNLLMALPEELSHLPCTALLEHMTKTYAQLMAPQTALPGEKRPRPGTEDGGTGSTGP 313
Query: 880 EEAGQATPQAPENAGPSEAISTWQAAGVCPLNPFLVPLELLGQAATPAR 1026
EE QA+PQA E P E W+A G+CPLNPFLVPL L+ QA +P+R
Sbjct: 314 EEPDQASPQASE---PIEPRLAWKAVGICPLNPFLVPLGLVSQAPSPSR 359
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.312 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,675,442
Number of extensions: 1137802
Number of successful extensions: 6790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6629
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003071
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123246.1| PREDICTED: snRNA-activating protein complex ... 607 e-174
>ref|XP_003123246.1| PREDICTED: snRNA-activating protein complex subunit 2-like [Sus
scrofa].
Length = 331
Score = 607 bits (1564), Expect = e-174
Identities = 307/318 (96%), Positives = 307/318 (96%)
Frame = +1
Query: 73 YLGEVTRPAAWSAREKXXXXXXXXXXXGQPEPDAAELARELSGRSDAEVQDFLRQLKRRV 252
YLGEVTRPAAWSAREK GQPEPDAAELARELSGRSDAEVQDFLRQLKRRV
Sbjct: 14 YLGEVTRPAAWSAREKRQLLRLLQARRGQPEPDAAELARELSGRSDAEVQDFLRQLKRRV 73
Query: 253 AREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEP 432
AREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEP
Sbjct: 74 AREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEP 133
Query: 433 ISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPEAPGPAPKVQGPAPEASSESLAGPSAEG 612
ISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPEAPGPAPKVQGPAPEASSESLAGPSAEG
Sbjct: 134 ISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPEAPGPAPKVQGPAPEASSESLAGPSAEG 193
Query: 613 EFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELSRLPCAALVEHMTDMY 792
EFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELSRLPCAALVEHMTDMY
Sbjct: 194 EFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELSRLPCAALVEHMTDMY 253
Query: 793 LHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGPSEAISTWQAAGVCPL 972
LHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGPSEAISTWQAAGVCPL
Sbjct: 254 LHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGPSEAISTWQAAGVCPL 313
Query: 973 NPFLVPLELLGQAATPAR 1026
NPFLVPLELLGQAATPAR
Sbjct: 314 NPFLVPLELLGQAATPAR 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.312 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,945,712
Number of extensions: 912491
Number of successful extensions: 6449
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6229
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003071
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 674 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Minus
Query: 697 gagtcagctgtggtccttgacttgctcatggcacttcctgaggagttgtcccgcctgccc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692455 gagtcagctgtggtccttgacttgctcatggcacttcctgaggagttgtcccgcctgccc 71692396
Query: 757 tgtgctgccttggttgaacatatgacagatatgtacctacacctgatggccccccagccc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692395 tgtgctgccttggttgaacatatgacagatatgtacctacacctgatggccccccagccc 71692336
Query: 817 gactctgccaatgggagcctgggatctggggccgaggatggtgggtcaggctccaggggg 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692335 gactctgccaatgggagcctgggatctggggccgaggatggtgggtcaggctccaggggg 71692276
Query: 877 caagaggaggctggccaggccacccctcaggctcctgagaatgctgggcccagtgaagcg 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692275 caagaggaggctggccaggccacccctcaggctcctgagaatgctgggcccagtgaagcg 71692216
Query: 937 atatctacttggcaagcagctggagtctgccccttgaacccattcctggtacccctggaa 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692215 atatctacttggcaagcagctggagtctgccccttgaacccattcctggtacccctggaa 71692156
Query: 997 cttctaggccaggctgccacccctgcaaggtgaggggcca 1036
||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692155 cttctaggccaggctgccacccctgcaaggtgaggggcca 71692116
Score = 585 bits (295), Expect = e-164
Identities = 295/295 (100%)
Strand = Plus / Minus
Query: 403 caggtgctcaccattgcagccacggagcccatcagcctcctgcactccaagccccccaag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692841 caggtgctcaccattgcagccacggagcccatcagcctcctgcactccaagccccccaag 71692782
Query: 463 cccacccaggctcgaggaaagcaactgctcctcagtgctcctggagggcaggaggacaag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692781 cccacccaggctcgaggaaagcaactgctcctcagtgctcctggagggcaggaggacaag 71692722
Query: 523 ggccctgaggctcctggccctgcccccaaggtgcaaggtcctgcccctgaggcatcttct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692721 ggccctgaggctcctggccctgcccccaaggtgcaaggtcctgcccctgaggcatcttct 71692662
Query: 583 gagtccctggctggtccatctgctgagggagagttttctgtggactttgagaagatctac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692661 gagtccctggctggtccatctgctgagggagagttttctgtggactttgagaagatctac 71692602
Query: 643 aagtacctgtcatccatctcccgcagctgccacggcccagagctttctgcagctg 697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71692601 aagtacctgtcatccatctcccgcagctgccacggcccagagctttctgcagctg 71692547
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Minus
Query: 1 agctgcaacaccgccctcccgcgccgcaccggcatgaagcctcctcagcggcggcgagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71694277 agctgcaacaccgccctcccgcgccgcaccggcatgaagcctcctcagcggcggcgagcc 71694218
Query: 61 gccccagcgcgctatctgggagaggtgacccggcccgcggcctggagcgcccgcgagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71694217 gccccagcgcgctatctgggagaggtgacccggcccgcggcctggagcgcccgcgagaag 71694158
Query: 121 cggcagcttttacgactgctgcaggcgcgacggggccagccggagccggacgccgccgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71694157 cggcagcttttacgactgctgcaggcgcgacggggccagccggagccggacgccgccgag 71694098
Query: 181 ctggcccgggaactgtcgggcagaagtgatgcggaggt 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 71694097 ctggcccgggaactgtcgggcagaagtgatgcggaggt 71694060
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 215 aggtccaggactttctgcggcagctcaagcgccgagtggcccgggaagccattcagagga 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71693444 aggtccaggactttctgcggcagctcaagcgccgagtggcccgggaagccattcagagga 71693385
Query: 275 tgtatcctggtggcccacaaggtctaagacgccaggaagcacagcccccagcccccatcg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71693384 tgtatcctggtggcccacaaggtctaagacgccaggaagcacagcccccagcccccatcg 71693325
Query: 335 aggt 338
||||
Sbjct: 71693324 aggt 71693321
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 335 aggtatggatggatctggctgaaaaggtaacaggcccgctggaagaatccctgactgtgg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71693164 aggtatggatggatctggctgaaaaggtaacaggcccgctggaagaatccctgactgtgg 71693105
Query: 395 ctttctcacaggt 407
|||||||||||||
Sbjct: 71693104 ctttctcacaggt 71693092
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,952,325
Number of extensions: 267
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 5
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)