Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003079
(1257 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_872596.1| E3 ubiquitin-protein ligase TRIM21 [Bos taurus]. 383 e-106
Alignment gi|NP_001192118.1| tripartite motif-containing protein 6 [Bos t... 215 6e-56
Alignment gi|XP_002693251.1| PREDICTED: tripartite motif-containing 6-lik... 197 2e-50
Alignment gi|XP_869772.2| PREDICTED: tripartite motif protein 5 alpha-lik... 197 2e-50
Alignment gi|NP_001029970.1| tripartite motif-containing protein 5 [Bos t... 192 4e-49
Alignment gi|NP_001192234.1| tripartite motif-containing protein 5 [Bos t... 192 7e-49
Alignment gi|NP_001039926.1| tripartite motif-containing protein 34 [Bos ... 191 1e-48
Alignment gi|XP_002689127.1| PREDICTED: tripartite motif protein 21-like ... 187 2e-47
Alignment gi|XP_603937.2| PREDICTED: tripartite motif protein 21 [Bos tau... 187 2e-47
Alignment gi|NP_001029746.1| tripartite motif-containing protein 38 [Bos ... 166 4e-41
>ref|NP_872596.1| E3 ubiquitin-protein ligase TRIM21 [Bos taurus].
Length = 469
Score = 383 bits (983), Expect = e-106
Identities = 188/245 (76%), Positives = 203/245 (82%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLL 337
MASA+PL MW+EVTCSICLDPMVEP+SIECGHSFCQECISEVGK+GGSVCPVCR+HFLL
Sbjct: 1 MASAVPLTMMWEEVTCSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLL 60
Query: 338 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 517
+NLRPNRQVANMVDNL+++SQG KE P ELC VH EK+HLFC++DGK LCWVCSQSQKH
Sbjct: 61 QNLRPNRQVANMVDNLRKISQGAKESPHGELCVVHREKIHLFCEEDGKALCWVCSQSQKH 120
Query: 518 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 697
RDH MVPIEEAAQEYQEKLQVAL KLR+KQE AEKLE DIA K+A+WKGKVEAHKLRIHE
Sbjct: 121 RDHPMVPIEEAAQEYQEKLQVALNKLRHKQELAEKLELDIAMKKASWKGKVEAHKLRIHE 180
Query: 698 EFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPM 877
EFVRQKNF G TEARLAQQ QALQELIAELERR RG
Sbjct: 181 EFVRQKNFLAEEEQKQLQKLEEEERQQLRTLGDTEARLAQQIQALQELIAELERRRRGSA 240
Query: 878 LELLQ 892
LELLQ
Sbjct: 241 LELLQ 245
>ref|NP_001192118.1| tripartite motif-containing protein 6 [Bos taurus].
Length = 487
Score = 215 bits (548), Expect = 6e-56
Identities = 113/251 (45%), Positives = 156/251 (62%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVC 319
M SA+ L + DEVTC ICL+ + EP+SI+CGHSFCQ CI S G++G S CPVC
Sbjct: 1 MTSAV-LVDIQDEVTCPICLELLTEPLSIDCGHSFCQACITADNKESMPGQEGQSRCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
+ + L NLRPNR +AN+ + L+E+ G + + LC HGEKL LFC++DGK++CW+C
Sbjct: 60 QTSYWLGNLRPNRHLANIAERLREVVLGSGKQLKVILCVHHGEKLQLFCEEDGKLICWLC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+SQ+HR H +EE AQEYQEK Q +L+KLR +Q++AEKL A I KR +WK ++E
Sbjct: 120 ERSQEHRGHHTFLMEEIAQEYQEKFQESLKKLRQEQQEAEKLAAVIREKRISWKNQMEPE 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ RI ++F ++ E L QQSQ+L+ELI++LE
Sbjct: 180 RHRIQKQFDHLRSILDKEEQRQLKKLEEEERRGLNIIAEAEVELVQQSQSLRELISDLEH 239
Query: 860 RSRGPMLELLQ 892
R +G ELLQ
Sbjct: 240 RCQGSATELLQ 250
>ref|XP_002693251.1| PREDICTED: tripartite motif-containing 6-like [Bos taurus].
Length = 495
Score = 197 bits (500), Expect = 2e-50
Identities = 98/245 (40%), Positives = 148/245 (60%), Gaps = 6/245 (2%)
Frame = +2
Query: 176 LARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVCRQHFLL 337
L + DEVTC ICL+ + EP+S++CGHSFCQ CI S G++ CPVCR ++
Sbjct: 6 LVSLQDEVTCPICLELLTEPLSLDCGHSFCQICITANSNESLTGQERARKCPVCRINYKS 65
Query: 338 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 517
LRPN +AN+V ++E+ ++E + LCA HGEKL LFC++DGKV+CW+C +SQ+H
Sbjct: 66 GKLRPNWHLANIVQRVREVKLSLEEQEK-HLCAHHGEKLLLFCEEDGKVICWLCERSQEH 124
Query: 518 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 697
H +EE AQEYQ+KLQ ALE+L+ +Q++AE+LE+D + AAWK + + + +
Sbjct: 125 HGHPTFLMEEVAQEYQKKLQAALERLKQEQQEAEELESDFREEIAAWKNQTQHERQNVQA 184
Query: 698 EFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPM 877
EF + + +E L QQSQ ++ LI+++E R +G
Sbjct: 185 EFKKLREILDSEERKELQKLKAEETAILCTMANSENELVQQSQLVRNLISDIEHRLQGST 244
Query: 878 LELLQ 892
+++LQ
Sbjct: 245 MQMLQ 249
>ref|XP_869772.2| PREDICTED: tripartite motif protein 5 alpha-like isoform 2 [Bos
taurus].
Length = 321
Score = 197 bits (500), Expect = 2e-50
Identities = 98/245 (40%), Positives = 148/245 (60%), Gaps = 6/245 (2%)
Frame = +2
Query: 176 LARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVCRQHFLL 337
L + DEVTC ICL+ + EP+S++CGHSFCQ CI S G++ CPVCR ++
Sbjct: 6 LVSLQDEVTCPICLELLTEPLSLDCGHSFCQICITANSNESLTGQERARKCPVCRINYKS 65
Query: 338 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 517
LRPN +AN+V ++E+ ++E + LCA HGEKL LFC++DGKV+CW+C +SQ+H
Sbjct: 66 GKLRPNWHLANIVQRVREVKLSLEEQEK-HLCAHHGEKLLLFCEEDGKVICWLCERSQEH 124
Query: 518 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 697
H +EE AQEYQ+KLQ ALE+L+ +Q++AE+LE+D + AAWK + + + +
Sbjct: 125 HGHPTFLMEEVAQEYQKKLQAALERLKQEQQEAEELESDFREEIAAWKNQTQHERQNVQA 184
Query: 698 EFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPM 877
EF + + +E L QQSQ ++ LI+++E R +G
Sbjct: 185 EFKKLREILDSEERKELQKLKAEETAILCTMANSENELVQQSQLVRNLISDIEHRLQGST 244
Query: 878 LELLQ 892
+++LQ
Sbjct: 245 MQMLQ 249
>ref|NP_001029970.1| tripartite motif-containing protein 5 [Bos taurus].
Length = 498
Score = 192 bits (489), Expect = 4e-49
Identities = 99/251 (39%), Positives = 146/251 (58%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVC 319
MAS + L + +EVTC ICL+ + EP+S++CGHSFCQ CI S +G++G CPVC
Sbjct: 1 MASGI-LMNIQEEVTCPICLELLTEPLSLDCGHSFCQACITANNKESIIGQEGKRSCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
R F NLRPNR VAN+V L+E+ + + LCA HGEKL LFC+ DGKV+CW+C
Sbjct: 60 RVSFEPGNLRPNRHVANIVQRLREVKVSPEVEQERNLCAHHGEKLQLFCEQDGKVICWLC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+SQ+HR H +EE A EYQ+KLQ L++L+ K+++AE+LE + + + WK ++E
Sbjct: 120 ERSQEHRAHNTFLMEEIAPEYQKKLQSCLQRLKGKKQEAEELEIKVREEMSTWKIQIENE 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ +F + + +E L Q+ + LI+++ER
Sbjct: 180 IQNVQGKFTQLRQILDSEEMKELRKLKDELGVILKELAESENDLVQEKLLVSNLISDVER 239
Query: 860 RSRGPMLELLQ 892
+G +ELLQ
Sbjct: 240 HLQGSTMELLQ 250
>ref|NP_001192234.1| tripartite motif-containing protein 5 [Bos taurus].
Length = 511
Score = 192 bits (487), Expect = 7e-49
Identities = 98/251 (39%), Positives = 146/251 (58%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVC 319
MAS + L + +EVTC ICL+ + EP+S++CGH+FCQ CI S +G++G CPVC
Sbjct: 1 MASGI-LMNIQEEVTCPICLELLTEPLSLDCGHTFCQACITGNNKESIIGQEGKRSCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
R F NLRPNR VAN+V L+E+ + + LCA HGEKL LFC+ DGKV+CW+C
Sbjct: 60 RVSFEPGNLRPNRNVANIVQRLREVKVSPEVEQERNLCAHHGEKLQLFCEQDGKVICWLC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+SQ+HR H +EE A EYQ+KLQ L++L+ K+++AE+LE + + + WK ++E
Sbjct: 120 ERSQEHRGHNTFLMEEIAPEYQKKLQSCLQRLKGKKQEAEELEIKVREEMSTWKIQIENE 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ +F + + +E L Q+ + LI+++ER
Sbjct: 180 IQNVQGKFTQLRQILDSEEMKELRKLKDELGVILKELAESENDLVQEKLLVSNLISDVER 239
Query: 860 RSRGPMLELLQ 892
+G +ELLQ
Sbjct: 240 HLQGSTMELLQ 250
>ref|NP_001039926.1| tripartite motif-containing protein 34 [Bos taurus].
Length = 488
Score = 191 bits (485), Expect = 1e-48
Identities = 99/238 (41%), Positives = 142/238 (59%), Gaps = 4/238 (1%)
Frame = +2
Query: 191 DEVTCSICLDPMVEPVSIECGHSFCQECIS----EVGKDGGSVCPVCRQHFLLRNLRPNR 358
+EV+C IC + + EP+S+ CGHSFCQ CI+ ++ G S CPVC + L NL PN
Sbjct: 11 EEVSCPICRELLTEPLSLGCGHSFCQTCITNKETDISLGGDSSCPVCGTRYSLGNLWPNL 70
Query: 359 QVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTMVP 538
+AN+V+ L+++ +EG + LC H EKL LFCK+D KV+C +C +SQ+H H
Sbjct: 71 HLANIVERLRKVKLSPEEGQKTGLCVHHEEKLLLFCKEDRKVICRLCERSQEHHGHHTFL 130
Query: 539 IEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQKN 718
+EEA +E QE LQ AL +LR +Q++AEKLEADI +R +WK +++ + RI EF + ++
Sbjct: 131 MEEALKESQEMLQAALTRLRKEQQKAEKLEADIREERTSWKYQIQTERQRIQTEFNQLRS 190
Query: 719 FXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELLQ 892
EA L QQ + L+ELI++LERRS +ELLQ
Sbjct: 191 ILDSEERRELQKLEEEEKKTLDSLAVAEAELVQQGELLKELISDLERRSEWSTVELLQ 248
>ref|XP_002689127.1| PREDICTED: tripartite motif protein 21-like [Bos taurus].
Length = 487
Score = 187 bits (474), Expect = 2e-47
Identities = 100/251 (39%), Positives = 141/251 (56%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSV------CPVC 319
MAS P R+ +E C +CLD + PVS++CGHSFC CISE + S CP C
Sbjct: 1 MASGSPGERLCEEARCPVCLDFLQNPVSVDCGHSFCLRCISEFCEKSDSAQGGIYACPQC 60
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
R F L + RPNRQ+A++VD+++++ G + LC HGE+L FC++D +VLCWVC
Sbjct: 61 RGPFRLESFRPNRQLASLVDSVRQLGLGAEPSGA-RLCVRHGEELTRFCEEDQEVLCWVC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+ +HR H + ++EAA+ YQ KLQVA E +R + E+A EA++ K WK KVE
Sbjct: 120 DTTPEHRSHHTISLQEAARCYQIKLQVAQELVRKELEEASTQEANVGKKTVIWKEKVEMQ 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ R EF + + F ++ RL QQS+AL+EL ELE
Sbjct: 180 RQRFRWEFEKYRGFLALEEQLQLRRLEEEERATLQKLRESKNRLVQQSRALKELAEELEE 239
Query: 860 RSRGPMLELLQ 892
R + P L LL+
Sbjct: 240 RCQRPALGLLE 250
>ref|XP_603937.2| PREDICTED: tripartite motif protein 21 [Bos taurus].
Length = 487
Score = 187 bits (474), Expect = 2e-47
Identities = 100/251 (39%), Positives = 141/251 (56%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSV------CPVC 319
MAS P R+ +E C +CLD + PVS++CGHSFC CISE + S CP C
Sbjct: 1 MASGSPGERLCEEARCPVCLDFLQNPVSVDCGHSFCLRCISEFCEKSDSAQGGIYACPQC 60
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
R F L + RPNRQ+A++VD+++++ G + LC HGE+L FC++D +VLCWVC
Sbjct: 61 RGPFRLESFRPNRQLASLVDSVRQLGLGAEPSGA-RLCVRHGEELTRFCEEDQEVLCWVC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+ +HR H + ++EAA+ YQ KLQVA E +R + E+A EA++ K WK KVE
Sbjct: 120 DTTPEHRSHHTISLQEAARCYQIKLQVAQELVRKELEEASTQEANVGKKTVIWKEKVEMQ 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ R EF + + F ++ RL QQS+AL+EL ELE
Sbjct: 180 RQRFRWEFEKYRGFLALEEQLQLRRLEEEERATLQKLRESKNRLVQQSRALKELAEELEE 239
Query: 860 RSRGPMLELLQ 892
R + P L LL+
Sbjct: 240 RCQRPALGLLE 250
>ref|NP_001029746.1| tripartite motif-containing protein 38 [Bos taurus].
Length = 460
Score = 166 bits (420), Expect = 4e-41
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 8/245 (3%)
Frame = +2
Query: 182 RMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSV--------CPVCRQHFLL 337
+M +E TCSICL M VSI CGHS+C CI ++ + CP CR F +
Sbjct: 5 KMREEATCSICLHLMTNAVSISCGHSYCHVCIVSFFENLNRMTPGLKTFSCPQCRAPFTM 64
Query: 338 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 517
+LRPN+Q+ N+++ +KEM Q + C HGEKLHLFC+D+G+++CW+C + +H
Sbjct: 65 ASLRPNKQLGNLIEVIKEMDQEMS-------CEEHGEKLHLFCEDEGQLICWLCDRGAQH 117
Query: 518 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 697
+ H +EEA Q Y+EKLQ A+ KLR +E+ L+ A + W K+E K +I
Sbjct: 118 KGHATALVEEACQGYKEKLQQAVTKLRQLEEECMNLKVFTAEQITKWNEKIEFQKQKIQS 177
Query: 698 EFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPM 877
+F + F EA L Q++ LQ I ELE + +G
Sbjct: 178 DFKTLQRFLHEEEKSYLWKLEKEKEQTLRRLRDNEANLEQKNHELQSHILELENKCQGSA 237
Query: 878 LELLQ 892
+LLQ
Sbjct: 238 QKLLQ 242
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,921,515
Number of extensions: 1596197
Number of successful extensions: 8417
Number of sequences better than 1.0e-05: 86
Number of HSP's gapped: 8200
Number of HSP's successfully gapped: 89
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003079
(1257 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542344.2| PREDICTED: similar to 52 kDa Ro protein (Sjogre... 324 1e-88
Alignment gi|XP_853298.1| PREDICTED: similar to tripartite motif-containi... 214 1e-55
Alignment gi|NP_001192119.1| tripartite motif-containing protein 6 [Canis... 212 7e-55
Alignment gi|NP_001192120.1| tripartite motif-containing protein 34 [Cani... 193 3e-49
Alignment gi|XP_539335.2| PREDICTED: similar to tripartite motif-containi... 186 3e-47
Alignment gi|XP_542402.2| PREDICTED: similar to Tripartite motif protein ... 174 1e-43
Alignment gi|XP_542351.1| PREDICTED: similar to ring finger protein 137 [... 167 2e-41
Alignment gi|XP_539324.2| PREDICTED: similar to tripartite motif-containi... 145 6e-35
Alignment gi|XP_539323.2| PREDICTED: similar to tripartite motif protein ... 144 1e-34
Alignment gi|XP_848259.1| PREDICTED: similar to tripartite motif-containi... 144 2e-34
>ref|XP_542344.2| PREDICTED: similar to 52 kDa Ro protein (Sjogren syndrome type A
antigen) (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein
autoantigen Ro/SS-A) (Tripartite motif protein 21) (RING
finger protein 81) [Canis familiaris].
Length = 458
Score = 324 bits (831), Expect = 1e-88
Identities = 157/245 (64%), Positives = 186/245 (75%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLL 337
MA+A+PLA MW+EVTC ICLDP+VEP+SI+CGHSFC +CISEVGKDGG VCPVC+ FLL
Sbjct: 1 MAAAMPLAMMWEEVTCPICLDPVVEPMSIDCGHSFCHKCISEVGKDGGGVCPVCQHTFLL 60
Query: 338 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 517
RNLRPN +AN+VDNLK++ Q E Q E C VHGE+LHLFC++DGK+LCWVCSQSQ H
Sbjct: 61 RNLRPNWPLANVVDNLKQIGQNANEVTQREWCQVHGERLHLFCEEDGKILCWVCSQSQNH 120
Query: 518 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 697
R+H VP+EEAAQEYQEKL+VAL KLR +Q+ AE+LE + A KRAAWK +VE HK RIH
Sbjct: 121 RNHKTVPVEEAAQEYQEKLKVALRKLRKEQKLAEELEVNTAMKRAAWKSQVERHKRRIHA 180
Query: 698 EFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPM 877
EFV+Q NF G TEA LAQ++QALQEL+ ELERRS+G
Sbjct: 181 EFVQQINFLAAEEQRQMQRLDMEEREQLRILGETEAMLAQKTQALQELVVELERRSKGSP 240
Query: 878 LELLQ 892
LELLQ
Sbjct: 241 LELLQ 245
>ref|XP_853298.1| PREDICTED: similar to tripartite motif-containing 6 and tripartite
motif-containing 34 [Canis familiaris].
Length = 844
Score = 214 bits (545), Expect = 1e-55
Identities = 114/253 (45%), Positives = 156/253 (61%), Gaps = 6/253 (2%)
Frame = +2
Query: 152 STMASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISE------VGKDGGSVCP 313
+TM SA+ L + DEVTC ICL+ + EPVSI+CGHSFCQ CI +G+DG S CP
Sbjct: 33 ATMTSAV-LVDIRDEVTCPICLELLTEPVSIDCGHSFCQACIMGNSTELVMGQDGESSCP 91
Query: 314 VCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCW 493
VC+ + +LRPNR +AN+ + L+E+ G + LCA HGEKL LFCK+DGK++CW
Sbjct: 92 VCQTSYQPGDLRPNRHLANIAERLREVVLGPGMQLKVTLCAHHGEKLQLFCKEDGKLICW 151
Query: 494 VCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVE 673
+C +SQ+HR H V +EE A EYQEK Q +L KLR +Q++AE+L A I KR +WK ++E
Sbjct: 152 LCERSQEHRGHHTVLMEEVAHEYQEKFQESLGKLRQEQQEAERLTAVIIGKRTSWKNQME 211
Query: 674 AHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAEL 853
+ RI EF + ++ E L QQS+ L+ELI++L
Sbjct: 212 PERHRIQTEFNKLRSILDKEEQRQLKKLEEEERKGLSILEEAENELVQQSETLRELISDL 271
Query: 854 ERRSRGPMLELLQ 892
E R +G +ELLQ
Sbjct: 272 ELRCQGSAMELLQ 284
Score = 193 bits (491), Expect = 3e-49
Identities = 98/248 (39%), Positives = 147/248 (59%), Gaps = 6/248 (2%)
Frame = +2
Query: 167 ALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECIS------EVGKDGGSVCPVCRQH 328
AL + + DEV+C ICL+ E S++CGHSFCQ CI+ E+ G S CP+C
Sbjct: 359 ALKILNIQDEVSCPICLELSTESRSLDCGHSFCQGCIAVNNKEAEISPRGESTCPLCGVR 418
Query: 329 FLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQS 508
+ L NL N+ + N+V+ ++ +E + +LC HG+KL LFCK+D KV+CW+C +S
Sbjct: 419 YSLSNLWHNQHLVNIVERIRMFKLNPEELLKRDLCVRHGKKLLLFCKEDRKVICWLCERS 478
Query: 509 QKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLR 688
Q+HR H +EE +EYQE LQ A+E+LR +Q++AEKLE DI +R +WK +++ + R
Sbjct: 479 QEHRGHQTFLVEEVVKEYQENLQAAVERLRKEQQKAEKLETDIRGERTSWKYQIQTERQR 538
Query: 689 IHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSR 868
I EF + ++ EA LAQQ+Q ++ELI++LE RS+
Sbjct: 539 IRTEFNQLRSILDSEEQRVLQKLEEEEKRILDNLAEGEAELAQQNQLVKELISDLEHRSK 598
Query: 869 GPMLELLQ 892
++LLQ
Sbjct: 599 WSTVDLLQ 606
>ref|NP_001192119.1| tripartite motif-containing protein 6 [Canis lupus familiaris].
Length = 487
Score = 212 bits (539), Expect = 7e-55
Identities = 113/251 (45%), Positives = 154/251 (61%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISE------VGKDGGSVCPVC 319
M SA+ L + DEVTC ICL+ + EPVSI+CGHSFCQ CI +G+DG S CPVC
Sbjct: 1 MTSAV-LVDIRDEVTCPICLELLTEPVSIDCGHSFCQACIMGNSTELVMGQDGESSCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
+ + +LRPNR +AN+ + L+E+ G + LCA HGEKL LFCK+DGK++CW+C
Sbjct: 60 QTSYQPGDLRPNRHLANIAERLREVVLGPGMQLKVTLCAHHGEKLQLFCKEDGKLICWLC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+SQ+HR H V +EE A EYQEK Q +L KLR +Q++AE+L A I KR +WK ++E
Sbjct: 120 ERSQEHRGHHTVLMEEVAHEYQEKFQESLGKLRQEQQEAERLTAVIIGKRTSWKNQMEPE 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ RI EF + ++ E L QQS+ L+ELI++LE
Sbjct: 180 RHRIQTEFNKLRSILDKEEQRQLKKLEEEERKGLSILEEAENELVQQSETLRELISDLEL 239
Query: 860 RSRGPMLELLQ 892
R +G +ELLQ
Sbjct: 240 RCQGSAMELLQ 250
>ref|NP_001192120.1| tripartite motif-containing protein 34 [Canis lupus familiaris].
Length = 487
Score = 193 bits (491), Expect = 3e-49
Identities = 98/248 (39%), Positives = 147/248 (59%), Gaps = 6/248 (2%)
Frame = +2
Query: 167 ALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECIS------EVGKDGGSVCPVCRQH 328
AL + + DEV+C ICL+ E S++CGHSFCQ CI+ E+ G S CP+C
Sbjct: 2 ALKILNIQDEVSCPICLELSTESRSLDCGHSFCQGCIAVNNKEAEISPRGESTCPLCGVR 61
Query: 329 FLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQS 508
+ L NL N+ + N+V+ ++ +E + +LC HG+KL LFCK+D KV+CW+C +S
Sbjct: 62 YSLSNLWHNQHLVNIVERIRMFKLNPEELLKRDLCVRHGKKLLLFCKEDRKVICWLCERS 121
Query: 509 QKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLR 688
Q+HR H +EE +EYQE LQ A+E+LR +Q++AEKLE DI +R +WK +++ + R
Sbjct: 122 QEHRGHQTFLVEEVVKEYQENLQAAVERLRKEQQKAEKLETDIRGERTSWKYQIQTERQR 181
Query: 689 IHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSR 868
I EF + ++ EA LAQQ+Q ++ELI++LE RS+
Sbjct: 182 IRTEFNQLRSILDSEEQRVLQKLEEEEKRILDNLAEGEAELAQQNQLVKELISDLEHRSK 241
Query: 869 GPMLELLQ 892
++LLQ
Sbjct: 242 WSTVDLLQ 249
>ref|XP_539335.2| PREDICTED: similar to tripartite motif-containing 58 [Canis
familiaris].
Length = 517
Score = 186 bits (473), Expect = 3e-47
Identities = 102/262 (38%), Positives = 142/262 (54%), Gaps = 7/262 (2%)
Frame = +2
Query: 128 PSAAS*PGSTMASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSV 307
P A+ + MAS P R+ +E C +CLD + +PVS+ CGHSFC CISE + S
Sbjct: 21 PGQATSGPTAMASGAPGERLREEARCPVCLDFLQDPVSVACGHSFCLRCISEFCEKSASA 80
Query: 308 ------CPVCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQW-ELCAVHGEKLHLFC 466
CP CR F L + RPNRQ+A++VD+++++ G GP CA HGE L LFC
Sbjct: 81 QGGLYACPQCRGPFALESFRPNRQLASLVDSVRQLGLGA--GPLGARQCARHGEDLSLFC 138
Query: 467 KDDGKVLCWVCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATK 646
++D VLCWVC + +HR H P+++AA+ YQ KLQ+ALE +R + E+ EA++ K
Sbjct: 139 EEDQDVLCWVCDTTPEHRSHHTAPLQDAARRYQTKLQMALELIRKEMEETLTQEANMGKK 198
Query: 647 RAAWKGKVEAHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQ 826
WK KVE + R EF + + F + RL QQ +
Sbjct: 199 TVVWKEKVEIQRQRFRLEFEKYRGFLALEEQLQLRRLEEEERATLQRLRENKNRLVQQGR 258
Query: 827 ALQELIAELERRSRGPMLELLQ 892
AL+EL ELE R + L LL+
Sbjct: 259 ALKELAQELEERCQRSALALLE 280
>ref|XP_542402.2| PREDICTED: similar to Tripartite motif protein 22 (RING finger
protein 94) (50 kDa stimulated trans-acting factor)
(Staf-50) [Canis familiaris].
Length = 494
Score = 174 bits (442), Expect = 1e-43
Identities = 91/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Frame = +2
Query: 179 ARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGS------VCPVCRQHFLLR 340
A + +VTC ICL+ + P+S++CGHSFCQ CI+ + G+ CPVC+ +
Sbjct: 7 ANIQKDVTCPICLELLTMPLSLDCGHSFCQACITAKSMESGTHQGEEGTCPVCQCKYQFW 66
Query: 341 NLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHR 520
NLRPN+ +AN+ ++E K+ +LC VHGEKL FCK+DGK +C C+QS +HR
Sbjct: 67 NLRPNQPLANIAKKVRENMSPQKQ----KLCEVHGEKLLTFCKEDGKAICQHCAQSAEHR 122
Query: 521 DHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEE 700
H + IE+ +EYQEKLQ AL+KLR + + E+LEADI KR +WK +++ + RI +
Sbjct: 123 GHQIFFIEKVIKEYQEKLQAALKKLRKEHTKVEELEADIKEKRVSWKNHMQSERQRILKG 182
Query: 701 FVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPML 880
F ++ + AQQ Q L+ELI+++E + G +
Sbjct: 183 FNEMRDILNSEEKKVLQKLEEDEVNVLDNLIVARDQFAQQKQCLRELISDIEHQIWGSSV 242
Query: 881 ELLQ 892
+ +Q
Sbjct: 243 DTVQ 246
>ref|XP_542351.1| PREDICTED: similar to ring finger protein 137 [Canis familiaris].
Length = 485
Score = 167 bits (423), Expect = 2e-41
Identities = 96/250 (38%), Positives = 138/250 (55%), Gaps = 16/250 (6%)
Frame = +2
Query: 191 DEVTCSICLDPMVEPVSIECGHSFCQECISEV------GKDGGSVCPVCRQHFLLRNLRP 352
+EV C IC+ + EPVSI+CGHSFC C+S + ++ G CP+CR RNLRP
Sbjct: 12 EEVACPICMTFLREPVSIDCGHSFCHSCLSGLWEVPGESQNWGYTCPLCRAPVQPRNLRP 71
Query: 353 NRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTM 532
N Q+AN+V+ + + G + ++C +HGE+L +FCK+DG ++C CSQS +H H++
Sbjct: 72 NWQLANVVEKVHLLGLHPGMGLKGDVCELHGEQLKMFCKEDGLIICETCSQSSEHEAHSV 131
Query: 533 VPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQ 712
VP+E+ EY+ KL ALE LR +Q++A KLE D + A WK +VE K I EF +
Sbjct: 132 VPMEDVTWEYKWKLHEALEHLRKEQDEAWKLEVDERKRTANWKIQVEIRKQSITWEFEKY 191
Query: 713 KNF---XXXXXXXXXXXXXXXXXXXXXXXGATEAR-------LAQQSQALQELIAELERR 862
+ G T + L QQ QAL ++IAELE R
Sbjct: 192 RRLLKKKQPPGRQLEVEAAAALASLEQEEGETMQKLEQNHNELIQQRQALWKMIAELEER 251
Query: 863 SRGPMLELLQ 892
S+ P+ +LQ
Sbjct: 252 SQRPIHWMLQ 261
>ref|XP_539324.2| PREDICTED: similar to tripartite motif-containing 11 isoform 1
[Canis familiaris].
Length = 486
Score = 145 bits (367), Expect = 6e-35
Identities = 86/239 (35%), Positives = 123/239 (51%), Gaps = 4/239 (1%)
Frame = +2
Query: 191 DEVTCSICLDPMVEPVSIECGHSFCQECISEVG--KDGGSVCPVCRQHFLLRNLRPNRQV 364
+E TC+ICLD +PV +CGH+FC+ECI +G CP CR+ RNLRPNR +
Sbjct: 12 EEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSPQRNLRPNRPL 71
Query: 365 ANMVDNLKEMS--QGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTMVP 538
A M + + + V +G +CA H E L FC D+ ++LC C +S +H H + P
Sbjct: 72 AKMAEMARRLHPPSPVPQG----VCAAHREPLAAFCGDELRLLCAACERSGEHWTHRVRP 127
Query: 539 IEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQKN 718
+++AA++ + KL+ +LE LR + E A +A A W+ VE+ + + EF R +
Sbjct: 128 LQDAAEDLKGKLEKSLEHLRKQMEDALLFQAQAEETCALWQKMVESQRQNVLAEFERLRR 187
Query: 719 FXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELLQV 895
+ RL QQS L ELIAELE R + P L LLQV
Sbjct: 188 LLAEEEQRLLQRLEEEELEVLPPLRDSATRLGQQSAQLAELIAELEGRCQLPALGLLQV 246
>ref|XP_539323.2| PREDICTED: similar to tripartite motif protein 17 [Canis
familiaris].
Length = 513
Score = 144 bits (364), Expect = 1e-34
Identities = 89/254 (35%), Positives = 131/254 (51%), Gaps = 12/254 (4%)
Frame = +2
Query: 167 ALPLAR-MWDEVTCSICLDPMVEPVSIECGHSFCQECI--------SEVG---KDGGSVC 310
AL LAR + +E TCSICLD +PV CGH+FC+ECI S G + G C
Sbjct: 41 ALELARKLQEEATCSICLDYFTDPVMTACGHNFCRECIRLMWEKAKSRKGGRKRRGSFPC 100
Query: 311 PVCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLC 490
P CR+ RNLRPNR ++ + EM++ +LC H E L LFC+DD +C
Sbjct: 101 PECRELSPQRNLRPNR----LLTKVAEMARQHPAFQSRDLCKAHQELLKLFCEDDQSPIC 156
Query: 491 WVCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKV 670
+C +S++HR HT+VPIEEA QEY+ KL+ + LR + + +++A A W+ KV
Sbjct: 157 VMCRESREHRPHTVVPIEEAVQEYKLKLEADIGSLREEMMKTREMQAREKQTLAEWQEKV 216
Query: 671 EAHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAE 850
+ + RI EF + + A L +Q AL+ L+ +
Sbjct: 217 KEQRQRILMEFEKMGLLLVEEEQRLLQALKEEEDEVVAKLRESSAALEKQGHALEMLLLQ 276
Query: 851 LERRSRGPMLELLQ 892
LE +++ L++LQ
Sbjct: 277 LEDKNQHTPLQMLQ 290
>ref|XP_848259.1| PREDICTED: similar to tripartite motif-containing 11 isoform 2
[Canis familiaris].
Length = 468
Score = 144 bits (363), Expect = 2e-34
Identities = 85/238 (35%), Positives = 122/238 (51%), Gaps = 4/238 (1%)
Frame = +2
Query: 191 DEVTCSICLDPMVEPVSIECGHSFCQECISEVG--KDGGSVCPVCRQHFLLRNLRPNRQV 364
+E TC+ICLD +PV +CGH+FC+ECI +G CP CR+ RNLRPNR +
Sbjct: 12 EEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECRELSPQRNLRPNRPL 71
Query: 365 ANMVDNLKEMS--QGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTMVP 538
A M + + + V +G +CA H E L FC D+ ++LC C +S +H H + P
Sbjct: 72 AKMAEMARRLHPPSPVPQG----VCAAHREPLAAFCGDELRLLCAACERSGEHWTHRVRP 127
Query: 539 IEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQKN 718
+++AA++ + KL+ +LE LR + E A +A A W+ VE+ + + EF R +
Sbjct: 128 LQDAAEDLKGKLEKSLEHLRKQMEDALLFQAQAEETCALWQKMVESQRQNVLAEFERLRR 187
Query: 719 FXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELLQ 892
+ RL QQS L ELIAELE R + P L LLQ
Sbjct: 188 LLAEEEQRLLQRLEEEELEVLPPLRDSATRLGQQSAQLAELIAELEGRCQLPALGLLQ 245
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,001,031
Number of extensions: 1627185
Number of successful extensions: 8766
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 8584
Number of HSP's successfully gapped: 61
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003079
(1257 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003132.2| E3 ubiquitin-protein ligase TRIM21 [Homo sapien... 339 3e-93
Alignment gi|NP_001003819.1| tripartite motif-containing 6 and tripartite... 216 4e-56
Alignment gi|NP_001003818.1| tripartite motif-containing protein 6 isofor... 216 4e-56
Alignment gi|NP_477514.1| tripartite motif-containing protein 6 isoform 2... 215 8e-56
Alignment gi|NP_149083.2| tripartite motif-containing protein 5 isoform g... 209 4e-54
Alignment gi|NP_149023.2| tripartite motif-containing protein 5 isoform a... 209 4e-54
Alignment gi|NP_149084.2| tripartite motif-containing protein 5 isoform d... 209 4e-54
Alignment gi|NP_006065.2| E3 ubiquitin-protein ligase TRIM22 isoform 1 [H... 198 1e-50
Alignment gi|NP_569074.2| tripartite motif-containing protein 34 isoform ... 193 3e-49
Alignment gi|NP_001003827.1| tripartite motif-containing protein 34 isofo... 193 3e-49
>ref|NP_003132.2| E3 ubiquitin-protein ligase TRIM21 [Homo sapiens].
Length = 475
Score = 339 bits (870), Expect = 3e-93
Identities = 169/245 (68%), Positives = 187/245 (76%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLL 337
MASA L MW+EVTC ICLDP VEPVSIECGHSFCQECIS+VGK GGSVCPVCRQ FLL
Sbjct: 1 MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLL 60
Query: 338 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 517
+NLRPNRQ+ANMV+NLKE+SQ +EG Q E CAVHGE+LHLFC+ DGK LCWVC+QS+KH
Sbjct: 61 KNLRPNRQLANMVNNLKEISQEAREGTQGERCAVHGERLHLFCEKDGKALCWVCAQSRKH 120
Query: 518 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 697
RDH MVP+EEAAQEYQEKLQVAL +LR KQE AEKLE +IA KRA WK VE K RIH
Sbjct: 121 RDHAMVPLEEAAQEYQEKLQVALGELRRKQELAEKLEVEIAIKRADWKKTVETQKSRIHA 180
Query: 698 EFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPM 877
EFV+QKNF G EA+LAQQSQALQELI+EL+RR
Sbjct: 181 EFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEAKLAQQSQALQELISELDRRCHSSA 240
Query: 878 LELLQ 892
LELLQ
Sbjct: 241 LELLQ 245
>ref|NP_001003819.1| tripartite motif-containing 6 and tripartite motif-containing 34
[Homo sapiens].
Length = 842
Score = 216 bits (550), Expect = 4e-56
Identities = 112/253 (44%), Positives = 159/253 (62%), Gaps = 6/253 (2%)
Frame = +2
Query: 152 STMASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCP 313
+TM S + L + +EVTC ICL+ + EP+SI+CGHSFCQ CI S +G++G CP
Sbjct: 27 ATMTSPV-LVDIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCP 85
Query: 314 VCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCW 493
VC+ + NLRPNR +AN+V L+E+ G + + LCA HGEKL LFC++DGKV+CW
Sbjct: 86 VCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVICW 145
Query: 494 VCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVE 673
+C +SQ+HR H +EE AQEYQEK Q +L+KL+N++++AEKL A I K+ +WK ++E
Sbjct: 146 LCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREKKTSWKNQME 205
Query: 674 AHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAEL 853
+ RI EF + +N E L Q+Q+L+ELI++L
Sbjct: 206 PERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRIIEEAENDLVHQTQSLRELISDL 265
Query: 854 ERRSRGPMLELLQ 892
ERR +G +ELLQ
Sbjct: 266 ERRCQGSTMELLQ 278
Score = 194 bits (494), Expect = 1e-49
Identities = 102/253 (40%), Positives = 151/253 (59%), Gaps = 6/253 (2%)
Frame = +2
Query: 152 STMASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD------GGSVCP 313
S MAS + L + +EVTC ICL+ + EP+S++CGHS C+ CI+ K+ G S CP
Sbjct: 353 SAMASKI-LLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCP 411
Query: 314 VCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCW 493
VC + +L+ N+ +AN+V+ LKE+ G + +LC HGEKL LFCK+D KV+CW
Sbjct: 412 VCGISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICW 471
Query: 494 VCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVE 673
+C +SQ+HR H V EE +E QEKLQ L++L+ ++E+AEKLEADI ++ +WK +V+
Sbjct: 472 LCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQ 531
Query: 674 AHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAEL 853
+ RI EF + ++ E L QQ Q ++ELI+++
Sbjct: 532 TERQRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDV 591
Query: 854 ERRSRGPMLELLQ 892
E RS+ +ELLQ
Sbjct: 592 ECRSQWSTMELLQ 604
>ref|NP_001003818.1| tripartite motif-containing protein 6 isoform 1 [Homo sapiens].
Length = 516
Score = 216 bits (550), Expect = 4e-56
Identities = 112/253 (44%), Positives = 159/253 (62%), Gaps = 6/253 (2%)
Frame = +2
Query: 152 STMASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCP 313
+TM S + L + +EVTC ICL+ + EP+SI+CGHSFCQ CI S +G++G CP
Sbjct: 27 ATMTSPV-LVDIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCP 85
Query: 314 VCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCW 493
VC+ + NLRPNR +AN+V L+E+ G + + LCA HGEKL LFC++DGKV+CW
Sbjct: 86 VCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVICW 145
Query: 494 VCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVE 673
+C +SQ+HR H +EE AQEYQEK Q +L+KL+N++++AEKL A I K+ +WK ++E
Sbjct: 146 LCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREKKTSWKNQME 205
Query: 674 AHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAEL 853
+ RI EF + +N E L Q+Q+L+ELI++L
Sbjct: 206 PERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRIIEEAENDLVHQTQSLRELISDL 265
Query: 854 ERRSRGPMLELLQ 892
ERR +G +ELLQ
Sbjct: 266 ERRCQGSTMELLQ 278
>ref|NP_477514.1| tripartite motif-containing protein 6 isoform 2 [Homo sapiens].
Length = 488
Score = 215 bits (547), Expect = 8e-56
Identities = 108/240 (45%), Positives = 152/240 (63%), Gaps = 6/240 (2%)
Frame = +2
Query: 191 DEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVCRQHFLLRNLRP 352
+EVTC ICL+ + EP+SI+CGHSFCQ CI S +G++G CPVC+ + NLRP
Sbjct: 11 EEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPGNLRP 70
Query: 353 NRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTM 532
NR +AN+V L+E+ G + + LCA HGEKL LFC++DGKV+CW+C +SQ+HR H
Sbjct: 71 NRHLANIVRRLREVVLGPGKQLKAVLCADHGEKLQLFCQEDGKVICWLCERSQEHRGHHT 130
Query: 533 VPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQ 712
+EE AQEYQEK Q +L+KL+N++++AEKL A I K+ +WK ++E + RI EF +
Sbjct: 131 FLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQL 190
Query: 713 KNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELLQ 892
+N E L Q+Q+L+ELI++LERR +G +ELLQ
Sbjct: 191 RNILDRVEQRELKKLEQEEKKGLRIIEEAENDLVHQTQSLRELISDLERRCQGSTMELLQ 250
>ref|NP_149083.2| tripartite motif-containing protein 5 isoform gamma [Homo sapiens].
Length = 347
Score = 209 bits (532), Expect = 4e-54
Identities = 108/250 (43%), Positives = 158/250 (63%), Gaps = 5/250 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD-----GGSVCPVCR 322
MAS + L + +EVTC ICL+ + +P+S++CGHSFCQ C++ K G S CPVCR
Sbjct: 1 MASGI-LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
Query: 323 QHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCS 502
+ N+RPNR VAN+V+ L+E+ EG + + CA HGEKL LFC++DGKV+CW+C
Sbjct: 60 ISYQPENIRPNRHVANIVEKLREVKLS-PEGQKVDHCARHGEKLLLFCQEDGKVICWLCE 118
Query: 503 QSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHK 682
+SQ+HR H EE A+EYQ KLQ ALE LR KQ++AE+LEADI ++A+WK +++ K
Sbjct: 119 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK 178
Query: 683 LRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERR 862
+ +F + ++ +E + QQ+Q+L+ELI++LE R
Sbjct: 179 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR 238
Query: 863 SRGPMLELLQ 892
+G ++ELLQ
Sbjct: 239 LQGSVMELLQ 248
>ref|NP_149023.2| tripartite motif-containing protein 5 isoform alpha [Homo sapiens].
Length = 493
Score = 209 bits (532), Expect = 4e-54
Identities = 108/250 (43%), Positives = 158/250 (63%), Gaps = 5/250 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD-----GGSVCPVCR 322
MAS + L + +EVTC ICL+ + +P+S++CGHSFCQ C++ K G S CPVCR
Sbjct: 1 MASGI-LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
Query: 323 QHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCS 502
+ N+RPNR VAN+V+ L+E+ EG + + CA HGEKL LFC++DGKV+CW+C
Sbjct: 60 ISYQPENIRPNRHVANIVEKLREVKLS-PEGQKVDHCARHGEKLLLFCQEDGKVICWLCE 118
Query: 503 QSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHK 682
+SQ+HR H EE A+EYQ KLQ ALE LR KQ++AE+LEADI ++A+WK +++ K
Sbjct: 119 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK 178
Query: 683 LRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERR 862
+ +F + ++ +E + QQ+Q+L+ELI++LE R
Sbjct: 179 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR 238
Query: 863 SRGPMLELLQ 892
+G ++ELLQ
Sbjct: 239 LQGSVMELLQ 248
>ref|NP_149084.2| tripartite motif-containing protein 5 isoform delta [Homo sapiens].
Length = 326
Score = 209 bits (532), Expect = 4e-54
Identities = 108/250 (43%), Positives = 158/250 (63%), Gaps = 5/250 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD-----GGSVCPVCR 322
MAS + L + +EVTC ICL+ + +P+S++CGHSFCQ C++ K G S CPVCR
Sbjct: 1 MASGI-LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
Query: 323 QHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCS 502
+ N+RPNR VAN+V+ L+E+ EG + + CA HGEKL LFC++DGKV+CW+C
Sbjct: 60 ISYQPENIRPNRHVANIVEKLREVKLS-PEGQKVDHCARHGEKLLLFCQEDGKVICWLCE 118
Query: 503 QSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHK 682
+SQ+HR H EE A+EYQ KLQ ALE LR KQ++AE+LEADI ++A+WK +++ K
Sbjct: 119 RSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDK 178
Query: 683 LRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERR 862
+ +F + ++ +E + QQ+Q+L+ELI++LE R
Sbjct: 179 TNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHR 238
Query: 863 SRGPMLELLQ 892
+G ++ELLQ
Sbjct: 239 LQGSVMELLQ 248
>ref|NP_006065.2| E3 ubiquitin-protein ligase TRIM22 isoform 1 [Homo sapiens].
Length = 498
Score = 198 bits (503), Expect = 1e-50
Identities = 100/239 (41%), Positives = 142/239 (59%), Gaps = 6/239 (2%)
Frame = +2
Query: 194 EVTCSICLDPMVEPVSIECGHSFCQECISEVGKD------GGSVCPVCRQHFLLRNLRPN 355
EVTC ICL+ + EP+S++CGHSFCQ CI+ K+ G S CPVC+ F NLRPN
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGNLRPN 71
Query: 356 RQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTMV 535
R +AN+V+ +KE+ +EG + ++C HG+KL +FCK+DGKV+CWVC SQ+H+ H
Sbjct: 72 RHLANIVERVKEVKMSPQEGQKRDVCEHHGKKLQIFCKEDGKVICWVCELSQEHQGHQTF 131
Query: 536 PIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQK 715
I E +E QEKLQVAL++L + ++AEKLE DI +R AWK ++ + +I + F +
Sbjct: 132 RINEVVKECQEKLQVALQRLIKEDQEAEKLEDDIRQERTAWKNYIQIERQKILKGFNEMR 191
Query: 716 NFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELLQ 892
A +L QQ Q LI++L+RR RG +E+LQ
Sbjct: 192 VILDNEEQRELQKLEEGEVNVLDNLAAATDQLVQQRQDASTLISDLQRRLRGSSVEMLQ 250
>ref|NP_569074.2| tripartite motif-containing protein 34 isoform 3 [Homo sapiens].
Length = 270
Score = 193 bits (490), Expect = 3e-49
Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD------GGSVCPVC 319
MAS + L + +EVTC ICL+ + EP+S++CGHS C+ CI+ K+ G S CPVC
Sbjct: 1 MASKI-LLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
+ +L+ N+ +AN+V+ LKE+ G + +LC HGEKL LFCK+D KV+CW+C
Sbjct: 60 GISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+SQ+HR H V EE +E QEKLQ L++L+ ++E+AEKLEADI ++ +WK +V+
Sbjct: 120 ERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTE 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ RI EF + ++ E L QQ Q ++ELI+++E
Sbjct: 180 RQRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVEC 239
Query: 860 RSRGPMLELLQ 892
RS+ +ELLQ
Sbjct: 240 RSQWSTMELLQ 250
>ref|NP_001003827.1| tripartite motif-containing protein 34 isoform 1 [Homo sapiens].
Length = 488
Score = 193 bits (490), Expect = 3e-49
Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD------GGSVCPVC 319
MAS + L + +EVTC ICL+ + EP+S++CGHS C+ CI+ K+ G S CPVC
Sbjct: 1 MASKI-LLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
+ +L+ N+ +AN+V+ LKE+ G + +LC HGEKL LFCK+D KV+CW+C
Sbjct: 60 GISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+SQ+HR H V EE +E QEKLQ L++L+ ++E+AEKLEADI ++ +WK +V+
Sbjct: 120 ERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTE 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ RI EF + ++ E L QQ Q ++ELI+++E
Sbjct: 180 RQRIQTEFDQLRSILNNEEQRELQRLEEEEKKTLDKFAEAEDELVQQKQLVRELISDVEC 239
Query: 860 RSRGPMLELLQ 892
RS+ +ELLQ
Sbjct: 240 RSQWSTMELLQ 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,785,821
Number of extensions: 1571915
Number of successful extensions: 8725
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 8382
Number of HSP's successfully gapped: 108
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003079
(1257 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076021.1| E3 ubiquitin-protein ligase TRIM21 [Mus musc... 296 2e-80
Alignment gi|NP_033303.3| E3 ubiquitin-protein ligase TRIM21 [Mus musculu... 296 2e-80
Alignment gi|NP_001013637.1| tripartite motif-containing protein 6 [Mus m... 208 6e-54
Alignment gi|NP_001230845.1| tripartite motif-containing 34B [Mus musculu... 177 2e-44
Alignment gi|NP_001034136.1| tripartite motif-containing protein 58 [Mus ... 176 4e-44
Alignment gi|XP_485980.5| PREDICTED: tripartite motif-containing protein ... 175 6e-44
Alignment gi|XP_913027.2| PREDICTED: tripartite motif-containing protein ... 175 6e-44
Alignment gi|NP_109609.2| tripartite motif-containing protein 34 [Mus mus... 172 4e-43
Alignment gi|XP_001476277.2| PREDICTED: tripartite motif-containing prote... 171 1e-42
Alignment gi|NP_001139479.1| tripartite motif-containing 12C [Mus musculu... 170 2e-42
>ref|NP_001076021.1| E3 ubiquitin-protein ligase TRIM21 [Mus musculus].
Length = 462
Score = 296 bits (758), Expect = 2e-80
Identities = 143/241 (59%), Positives = 172/241 (71%)
Frame = +2
Query: 170 LPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLLRNLR 349
+ L +MW+EVTCSICLDPMVEP+SIECGH FC+ECI EVGK+GGS CP CRQ FLLRNLR
Sbjct: 1 MSLEKMWEEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLR 60
Query: 350 PNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHT 529
PNR +ANMV+NLK+++Q K+ Q C HGEKLHLFC++DG+ LCWVC+QS KHRDHT
Sbjct: 61 PNRHIANMVENLKQIAQNTKKSTQETHCMKHGEKLHLFCEEDGQALCWVCAQSGKHRDHT 120
Query: 530 MVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVR 709
VPIEEAA+ YQEK+ VALEKLR +E AEK+E D+ +R WK ++ K RIH EF
Sbjct: 121 RVPIEEAAKVYQEKIHVALEKLRKGKELAEKMEMDLTMQRTDWKRNIDTQKSRIHAEFAL 180
Query: 710 QKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELL 889
Q + G EA LA+++QALQELI+ELERR RG LELL
Sbjct: 181 QNSLLAQEEQRQLQRLEKDQREYLRLLGKKEAELAEKNQALQELISELERRIRGSELELL 240
Query: 890 Q 892
Q
Sbjct: 241 Q 241
>ref|NP_033303.3| E3 ubiquitin-protein ligase TRIM21 [Mus musculus].
Length = 462
Score = 296 bits (758), Expect = 2e-80
Identities = 143/241 (59%), Positives = 172/241 (71%)
Frame = +2
Query: 170 LPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLLRNLR 349
+ L +MW+EVTCSICLDPMVEP+SIECGH FC+ECI EVGK+GGS CP CRQ FLLRNLR
Sbjct: 1 MSLEKMWEEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLR 60
Query: 350 PNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHT 529
PNR +ANMV+NLK+++Q K+ Q C HGEKLHLFC++DG+ LCWVC+QS KHRDHT
Sbjct: 61 PNRHIANMVENLKQIAQNTKKSTQETHCMKHGEKLHLFCEEDGQALCWVCAQSGKHRDHT 120
Query: 530 MVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVR 709
VPIEEAA+ YQEK+ VALEKLR +E AEK+E D+ +R WK ++ K RIH EF
Sbjct: 121 RVPIEEAAKVYQEKIHVALEKLRKGKELAEKMEMDLTMQRTDWKRNIDTQKSRIHAEFAL 180
Query: 710 QKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELL 889
Q + G EA LA+++QALQELI+ELERR RG LELL
Sbjct: 181 QNSLLAQEEQRQLQRLEKDQREYLRLLGKKEAELAEKNQALQELISELERRIRGSELELL 240
Query: 890 Q 892
Q
Sbjct: 241 Q 241
>ref|NP_001013637.1| tripartite motif-containing protein 6 [Mus musculus].
Length = 488
Score = 208 bits (530), Expect = 6e-54
Identities = 111/242 (45%), Positives = 151/242 (62%), Gaps = 8/242 (3%)
Frame = +2
Query: 191 DEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVCRQHFLLRNLRP 352
DEVTC ICL+ + EP+SI+CGHSFCQ CI S G+ G S CPVCR + NLRP
Sbjct: 11 DEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCRTSYQPGNLRP 70
Query: 353 NRQVANMVDNLKEMSQGVKEGPQWEL--CAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDH 526
NR +A +V L+E++ + G Q E+ CA+HGEKL LFCK+DGK++CW+C +SQ+HR H
Sbjct: 71 NRHLAAIVKRLREVA--LCPGKQLEVIFCALHGEKLQLFCKEDGKLICWLCERSQEHRGH 128
Query: 527 TMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFV 706
+EE AQEYQ+ Q +L+KLR +Q++AEKL+A I KR +WK +VE K RI EF
Sbjct: 129 HTFLMEEVAQEYQDMFQESLKKLRREQQEAEKLKALIQEKRESWKSQVEPEKRRIQTEFK 188
Query: 707 RQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLEL 886
+ ++ E L QSQ+L++LI++LE R +G +EL
Sbjct: 189 QLRSILDREEQRELKKLEVEERKGLSIIEKAEGDLIHQSQSLKDLISDLEHRCQGSTVEL 248
Query: 887 LQ 892
LQ
Sbjct: 249 LQ 250
>ref|NP_001230845.1| tripartite motif-containing 34B [Mus musculus].
Length = 485
Score = 177 bits (449), Expect = 2e-44
Identities = 99/250 (39%), Positives = 137/250 (54%), Gaps = 5/250 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI-----SEVGKDGGSVCPVCR 322
MAS P + ++ TC +C + + + +S+ CGH CQ C+ + + G S CPVC
Sbjct: 1 MASTGP-TNIQEKTTCPVCQELLTKALSLGCGHLVCQACLISNKNAVINPRGKSSCPVCG 59
Query: 323 QHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCS 502
F L NL+ N+ +AN+V+ L E+ G + +LC HGEKL LFCK+D KV+CWVC
Sbjct: 60 TRFSLENLQANKHLANVVERLGEVKLKPDIGTKRDLCVHHGEKLLLFCKEDKKVICWVCE 119
Query: 503 QSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHK 682
+SQ+HR H EEA +E QE LQ AL +LR +QE+ E LEADI R +WK +V+ +
Sbjct: 120 RSQEHRGHHTFLWEEAVRECQENLQKALTRLRKEQEKVETLEADIKEDRLSWKRQVQTER 179
Query: 683 LRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERR 862
RI F + + EA LAQQSQ ++ELI++LE R
Sbjct: 180 QRIQTGFNQLRRILDKEEQRELKRLREEEQMILDSLAGAEAELAQQSQLVEELISDLELR 239
Query: 863 SRGPMLELLQ 892
ELLQ
Sbjct: 240 REWSDTELLQ 249
>ref|NP_001034136.1| tripartite motif-containing protein 58 [Mus musculus].
Length = 485
Score = 176 bits (445), Expect = 4e-44
Identities = 96/250 (38%), Positives = 138/250 (55%), Gaps = 5/250 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSV-----CPVCR 322
MA+A P R+ +E CS+CLD + EP+S++CGHSFC CISE + S CP CR
Sbjct: 1 MATA-PGERLQEEARCSVCLDFLQEPISVDCGHSFCLRCISEFCEKSDSAQGVYACPQCR 59
Query: 323 QHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCS 502
F + RPNRQ+A++VD+++++ G + CA HGE L FC++D +LCWVC
Sbjct: 60 GPFRPASFRPNRQLASLVDSVRQLGLGTGHAGSRQ-CARHGEDLSHFCEEDQTMLCWVCD 118
Query: 503 QSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHK 682
S +HR H ++EAA YQ L+ +LE ++ + E+A EA++ K WK KVE +
Sbjct: 119 TSPEHRSHRTETLQEAASRYQRMLRASLELVKKEMEEALTQEANVGKKTIIWKEKVEMQR 178
Query: 683 LRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERR 862
R EF + + F + RLAQQ++AL+EL ELE R
Sbjct: 179 QRFRLEFEKHRGFLAQEEQLQLRRLEEEERATLQRLRDSRNRLAQQNKALKELAEELEER 238
Query: 863 SRGPMLELLQ 892
S+ P LL+
Sbjct: 239 SQRPAPGLLE 248
>ref|XP_485980.5| PREDICTED: tripartite motif-containing protein 30 [Mus musculus].
Length = 513
Score = 175 bits (444), Expect = 6e-44
Identities = 93/249 (37%), Positives = 140/249 (56%), Gaps = 5/249 (2%)
Frame = +2
Query: 161 ASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI-----SEVGKDGGSVCPVCRQ 325
+SAL +A+ +EVTC ICL+ + EPVS +CGHSFCQ CI S DG CPVCR
Sbjct: 4 SSALAMAK--EEVTCPICLELLKEPVSTDCGHSFCQTCIILNYVSNRRMDGVGSCPVCRV 61
Query: 326 HFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQ 505
+L NLRPN+ + N+V +KE+ +E + CA HGEKL LFCK+D +CWVC +
Sbjct: 62 GYLFENLRPNQNMINIVKRIKELKSIPEEKEKVFYCAQHGEKLKLFCKEDRMAICWVCER 121
Query: 506 SQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKL 685
SQKHR H IEE QEY+EKLQ AL+KL +++ +K + D+ +RA W+ +++
Sbjct: 122 SQKHRGHQTALIEEVDQEYKEKLQAALKKLMENEKRCDKWQDDLQQQRADWENQIQRDVE 181
Query: 686 RIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRS 865
+ E ++ +E L +Q++ +++LI+++ +
Sbjct: 182 YVQMELKGLRDLLDSKENEGLQELKKEKEEVMEKLEESENELREQTELVRDLISDVGHQL 241
Query: 866 RGPMLELLQ 892
+E+LQ
Sbjct: 242 ALSTMEMLQ 250
>ref|XP_913027.2| PREDICTED: tripartite motif-containing protein 30 [Mus musculus].
Length = 513
Score = 175 bits (444), Expect = 6e-44
Identities = 93/249 (37%), Positives = 140/249 (56%), Gaps = 5/249 (2%)
Frame = +2
Query: 161 ASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI-----SEVGKDGGSVCPVCRQ 325
+SAL +A+ +EVTC ICL+ + EPVS +CGHSFCQ CI S DG CPVCR
Sbjct: 4 SSALAMAK--EEVTCPICLELLKEPVSTDCGHSFCQTCIILNYVSNRRMDGVGSCPVCRV 61
Query: 326 HFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQ 505
+L NLRPN+ + N+V +KE+ +E + CA HGEKL LFCK+D +CWVC +
Sbjct: 62 GYLFENLRPNQNMINIVKRIKELKSIPEEKEKVFYCAQHGEKLKLFCKEDRMAICWVCER 121
Query: 506 SQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKL 685
SQKHR H IEE QEY+EKLQ AL+KL +++ +K + D+ +RA W+ +++
Sbjct: 122 SQKHRGHQTALIEEVDQEYKEKLQAALKKLMENEKRCDKWQDDLQQQRADWENQIQRDVE 181
Query: 686 RIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRS 865
+ E ++ +E L +Q++ +++LI+++ +
Sbjct: 182 YVQMELKGLRDLLDSKENEGLQELKKEKEEVMEKLEESENELREQTELVRDLISDVGHQL 241
Query: 866 RGPMLELLQ 892
+E+LQ
Sbjct: 242 ALSTMEMLQ 250
>ref|NP_109609.2| tripartite motif-containing protein 34 [Mus musculus].
Length = 485
Score = 172 bits (437), Expect = 4e-43
Identities = 94/244 (38%), Positives = 132/244 (54%), Gaps = 5/244 (2%)
Frame = +2
Query: 176 LARMWDEVTCSICLDPMVEPVSIECGHSFCQECI-----SEVGKDGGSVCPVCRQHFLLR 340
L + ++ TC +C + + + +S+ CGH CQ C+ + + S CPVC F L
Sbjct: 6 LTNIQEKTTCPVCQELLTKALSLGCGHRVCQACLITKKNAVINPREKSSCPVCGTRFSLE 65
Query: 341 NLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHR 520
NL+ N+ +AN+V+ L E+ G + +LC HGEKL LFCK+D K +CWVC +SQ+HR
Sbjct: 66 NLQANKHLANVVERLGEVKLKPDIGTKRDLCVHHGEKLLLFCKEDKKAICWVCERSQEHR 125
Query: 521 DHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEE 700
H EEA +E QE LQ AL +LR +QE+ E LEADI R +WK +V+ + RI
Sbjct: 126 GHHTFLWEEAVRECQENLQKALTRLRKEQEKVETLEADIKEDRLSWKCQVQTERQRIQTG 185
Query: 701 FVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPML 880
F + + EA LAQQSQ ++ELI++LE R
Sbjct: 186 FNQLRRILDKEEQRELKRLREEEQMILDSLAGAEAELAQQSQLVEELISDLELRREWSDT 245
Query: 881 ELLQ 892
ELLQ
Sbjct: 246 ELLQ 249
>ref|XP_001476277.2| PREDICTED: tripartite motif-containing protein 30-like isoform 1
[Mus musculus].
Length = 315
Score = 171 bits (433), Expect = 1e-42
Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 7/252 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECIS---EVGKDGGSV---CPVC 319
MAS++ L + DEVTC ICL+ + EPVS +C HSFC+ CI+ E K G+ CPVC
Sbjct: 1 MASSI-LEMIKDEVTCPICLELLKEPVSTDCDHSFCRACITLNYESSKSRGTEEGSCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQW-ELCAVHGEKLHLFCKDDGKVLCWV 496
R NLR NRQ+AN+V+ LK + + EG Q +CA HGEKL LFCK D +CWV
Sbjct: 60 RVRVPFGNLRTNRQMANIVERLKGF-KSIPEGEQKVNVCAQHGEKLQLFCKKDMMAICWV 118
Query: 497 CSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEA 676
C +SQ+H H IEE EY+EKLQ AL+KL +++ ++ + D+ +RA W+ ++++
Sbjct: 119 CERSQEHHGHQTALIEEVDHEYKEKLQTALQKLMENEKRCDEWQDDLQQQRADWENQIQS 178
Query: 677 HKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELE 856
+ +F + F G +E L QQ Q +++LI+++E
Sbjct: 179 SVENVQRQFNGLREFLDSKENGELHRLKEEKEEVVKRLGESENELVQQRQWVRDLISDVE 238
Query: 857 RRSRGPMLELLQ 892
+ +E+LQ
Sbjct: 239 HQLELSTMEMLQ 250
>ref|NP_001139479.1| tripartite motif-containing 12C [Mus musculus].
Length = 497
Score = 170 bits (430), Expect = 2e-42
Identities = 90/240 (37%), Positives = 135/240 (56%), Gaps = 6/240 (2%)
Frame = +2
Query: 191 DEVTCSICLDPMVEPVSIECGHSFCQECIS------EVGKDGGSVCPVCRQHFLLRNLRP 352
+EVTC +CL+ MV+PVS +CGHSFCQ CI+ + K+ S CPVCR + NLRP
Sbjct: 11 EEVTCPLCLNLMVKPVSADCGHSFCQGCITVYFESTKCDKEMFS-CPVCRLSYQSSNLRP 69
Query: 353 NRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTM 532
N VAN+V+ LKE +E + CA HGEKL LFC+ D +CW+C +SQ+HR H
Sbjct: 70 NLHVANIVERLKEFKPSPEEEQKVFNCARHGEKLQLFCRKDMMAICWLCERSQEHRGHKT 129
Query: 533 VPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQ 712
IEE AQEY+E+LQV L++L +++ E + D+ R W+ +++ + EF R
Sbjct: 130 ALIEEVAQEYKEQLQVVLQRLMADKKEFENWKDDLQKDRTYWENQIQKDVENVQSEFKRM 189
Query: 713 KNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELLQ 892
++ +E AQQS+ L++ I+++E + + +E+LQ
Sbjct: 190 RDIMNSEEKKELQKLKQEKENIINKLAESENEHAQQSKLLEDFISDVEHQLQCSDIEILQ 249
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,572,461
Number of extensions: 1288047
Number of successful extensions: 6519
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 6366
Number of HSP's successfully gapped: 79
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003079
(1257 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157121.1| 52 kDa Ro protein [Sus scrofa]. 445 e-125
Alignment gi|NP_001037997.1| tripartite motif protein TRIM5 [Sus scrofa]. 207 1e-53
Alignment gi|XP_003123626.2| PREDICTED: tripartite motif-containing prote... 183 2e-46
Alignment gi|XP_003361968.1| PREDICTED: tripartite motif-containing prote... 182 4e-46
Alignment gi|XP_001926041.1| PREDICTED: tripartite motif-containing prote... 162 3e-40
Alignment gi|XP_003124381.1| PREDICTED: tripartite motif-containing prote... 156 2e-38
Alignment gi|NP_001116681.1| tripartite motif-containing protein 26 [Sus ... 147 2e-35
Alignment gi|XP_003123673.2| PREDICTED: e3 ubiquitin-protein ligase TRIM1... 144 8e-35
Alignment gi|NP_001121951.1| tripartite motif-containing protein 39 [Sus ... 143 2e-34
Alignment gi|XP_003357194.1| PREDICTED: tripartite motif-containing prote... 140 1e-33
>ref|NP_001157121.1| 52 kDa Ro protein [Sus scrofa].
Length = 469
Score = 445 bits (1144), Expect = e-125
Identities = 221/245 (90%), Positives = 221/245 (90%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLL 337
MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLL
Sbjct: 1 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCRQHFLL 60
Query: 338 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 517
RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH
Sbjct: 61 RNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQSQKH 120
Query: 518 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 697
RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE
Sbjct: 121 RDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHE 180
Query: 698 EFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPM 877
EFVRQKNF GATEARLAQQSQALQ LIAELERRSRGPM
Sbjct: 181 EFVRQKNFLAEEEQRQLQKLEEEEREQLKALGATEARLAQQSQALQGLIAELERRSRGPM 240
Query: 878 LELLQ 892
LELLQ
Sbjct: 241 LELLQ 245
>ref|NP_001037997.1| tripartite motif protein TRIM5 [Sus scrofa].
Length = 492
Score = 207 bits (526), Expect = 1e-53
Identities = 106/251 (42%), Positives = 157/251 (62%), Gaps = 6/251 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECI------SEVGKDGGSVCPVC 319
MAS + L + +EVTC ICL+ + EP+S++CGHSFCQ+C+ S +G +G S CPVC
Sbjct: 1 MASGI-LENIREEVTCPICLELLKEPLSLDCGHSFCQDCLTVNSKKSMMGLEGKSNCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
R + NLR NR VAN+V+ L+++S + + LC H EKL FCK+DGKV+CW+C
Sbjct: 60 RVSYQPGNLRLNRHVANIVERLRKVSLSPEVAQKGNLCVHHEEKLLFFCKEDGKVICWIC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAH 679
+SQ+H DH +EE AQEYQ+KLQ ALE+L+ +Q++AEKLEA + + ++WK ++++
Sbjct: 120 ERSQQHCDHQTFLVEEVAQEYQKKLQDALERLQEEQKEAEKLEAQVREEVSSWKNQIQSE 179
Query: 680 KLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELER 859
+ + EF+R + ++ LAQQ+Q + ELI+E+ER
Sbjct: 180 QQSVQAEFMRLRGILENEELKEMQMLKDEEKVILSDLADSKDELAQQTQLVGELISEVER 239
Query: 860 RSRGPMLELLQ 892
R G LE+LQ
Sbjct: 240 RLLGSKLEMLQ 250
>ref|XP_003123626.2| PREDICTED: tripartite motif-containing protein 58 [Sus scrofa].
Length = 480
Score = 183 bits (465), Expect = 2e-46
Identities = 100/252 (39%), Positives = 140/252 (55%), Gaps = 7/252 (2%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEV------GKDGGSVCPVC 319
MAS P R+ +E C +CLD + PVS++CGHSFC +CISE + G CP C
Sbjct: 1 MASGAPGERLCEEARCPVCLDFLQNPVSVDCGHSFCLKCISEFCEKSDSAQSGLYACPQC 60
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWE-LCAVHGEKLHLFCKDDGKVLCWV 496
R F N RPNRQ+A++V++++++ G GP LC H E+L FCK+D + LCWV
Sbjct: 61 RGPFRQENFRPNRQLASLVESVRQLGLGA--GPSSSRLCVKHHEELTRFCKEDQEALCWV 118
Query: 497 CSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEA 676
C + +HR H P++EAA+ YQ KLQ+A E +RN+ E+A EA+I K WK KVE
Sbjct: 119 CDTTPEHRSHHTEPLQEAARCYQVKLQMAQELVRNEMEEASTQEANIGKKTVIWKEKVEI 178
Query: 677 HKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAELE 856
+ R EF + + F ++ +L Q S+AL+EL ELE
Sbjct: 179 QRQRFRLEFEKYRGFLALEEQLQLRRLEEEERATLQRLRESKNQLVQHSRALKELAEELE 238
Query: 857 RRSRGPMLELLQ 892
R + P L LL+
Sbjct: 239 ERCQRPPLGLLE 250
>ref|XP_003361968.1| PREDICTED: tripartite motif-containing protein 6-like [Sus scrofa].
Length = 553
Score = 182 bits (461), Expect = 4e-46
Identities = 103/257 (40%), Positives = 150/257 (58%), Gaps = 10/257 (3%)
Frame = +2
Query: 152 STMASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD------GGSVCP 313
+TM SA+ L + +EVTC +CL+ + P+SI+CGHSFCQ CI++ ++ G S CP
Sbjct: 57 ATMVSAV-LVDIQEEVTCPLCLELLTLPLSIDCGHSFCQACITQNSEEWRMDQGGESSCP 115
Query: 314 VCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVL-- 487
VC+ + NLRPNR +AN+ + L+E+ G + LCA HGEKL LFC++DG+++
Sbjct: 116 VCQTRYRPGNLRPNRHLANIAERLREVVLGSGTQLKVILCAHHGEKLQLFCREDGQLIXX 175
Query: 488 --CWVCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWK 661
H +EE AQEYQE+ Q +L+KLR +Q++AEKL A I KRA+WK
Sbjct: 176 XXXXXXXXXXXXXXHHTFLMEEVAQEYQERFQESLKKLRQEQQEAEKLAALIREKRASWK 235
Query: 662 GKVEAHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQEL 841
++E + RI ++F + ++ E L QQSQ+L+EL
Sbjct: 236 NQMEPERHRIQKQFDQLRSILDKEEQRQLRKLEEEERKGLSVIAEAEGELLQQSQSLREL 295
Query: 842 IAELERRSRGPMLELLQ 892
I++LERR +G M ELLQ
Sbjct: 296 ISDLERRCQGSMTELLQ 312
>ref|XP_001926041.1| PREDICTED: tripartite motif-containing protein 38 [Sus scrofa].
Length = 465
Score = 162 bits (411), Expect = 3e-40
Identities = 89/253 (35%), Positives = 129/253 (50%), Gaps = 8/253 (3%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSV--------CP 313
MAS +M +E TCSICL M +PVSI CGHS+C CI ++ + CP
Sbjct: 1 MASTTTTRKMREEATCSICLHLMSKPVSISCGHSYCHSCIVNFFENLCRMQPWLETFSCP 60
Query: 314 VCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCW 493
CR F + +LRPN Q+ +++ +KEM Q + C HGEKLHLFC+++GK++CW
Sbjct: 61 QCRVPFKMSSLRPNVQLGGLIEAIKEMDQEMS-------CEEHGEKLHLFCENEGKLICW 113
Query: 494 VCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVE 673
C + +HR H +E+A Q Y+E+LQ A+ +L+ +E+ KL+ A + W K+E
Sbjct: 114 RCDRGPQHRGHATTLVEDACQGYKEELQKAVTQLKQLEEECMKLKMFTAKQITEWNEKIE 173
Query: 674 AHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAEL 853
K +I +F + F + L QQS LQ I EL
Sbjct: 174 IQKQKIQSDFKNLQRFLHEEEKSYLWKLEKEKEQTLRRLRDNKVHLEQQSHELQSHILEL 233
Query: 854 ERRSRGPMLELLQ 892
E + +G LLQ
Sbjct: 234 ENKCQGSAQNLLQ 246
>ref|XP_003124381.1| PREDICTED: tripartite motif-containing protein 4 [Sus scrofa].
Length = 516
Score = 156 bits (395), Expect = 2e-38
Identities = 100/289 (34%), Positives = 147/289 (50%), Gaps = 3/289 (1%)
Frame = +2
Query: 50 PSAREEAKLGASYYLRSPLKRPPRDLPSAAS*PGSTMASALPLARMWDEVTCSICLDPMV 229
PSA + + LR P P P+ P S++ + +E++CSICLD
Sbjct: 5 PSAGGGGRRSEGHRLRGPACSLPAFPPTPP--PDRGQRSSMEAEDLQEELSCSICLDYFE 62
Query: 230 EPVSIECGHSFCQECISEVGKDGGSV--CPVCRQHFLLRNLRPNRQVANMVDNLKEMSQG 403
+PVSIECGH+FC++C+ G + CP CR+ LRPN +A + +
Sbjct: 63 DPVSIECGHNFCRDCLRRGLAQGCNQFPCPECRRPSTPSALRPNWALARLAQKARRR--- 119
Query: 404 VKEGPQWE-LCAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTMVPIEEAAQEYQEKLQV 580
+EGP LC HGE L LFC+DD +++C VC +SQ+H+ HTM P++EA Q Y+ KL
Sbjct: 120 -REGPASRGLCDRHGEPLRLFCEDDQRLMCMVCRESQEHQAHTMAPMDEAFQSYRGKLLE 178
Query: 581 ALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQKNFXXXXXXXXXXXXX 760
A L K E+A L+ A WK K++ +LR+ EF + + F
Sbjct: 179 AQCHLTAKLEKAIGLQDLEMKNTAEWKEKMKNQRLRLSAEFAKLRLFLTEEEQLFLQRLS 238
Query: 761 XXXXXXXXXXGATEARLAQQSQALQELIAELERRSRGPMLELLQVRPED 907
RL+Q AL++LI+E++ +S+ P LELLQ P+D
Sbjct: 239 QEEEETKKKQREKTLRLSQMVSALKQLISEVKEKSQSPELELLQ-NPKD 286
>ref|NP_001116681.1| tripartite motif-containing protein 26 [Sus scrofa].
Length = 545
Score = 147 bits (370), Expect = 2e-35
Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGS--VCPVCRQHF 331
MA++ PL + +EVTCSICLD + +PV+I+CGH FC+ C +++ G VCP+C++ F
Sbjct: 1 MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPF 60
Query: 332 LLRNLRPNRQVANMVDNLKEMS--------QGVKEGPQWELCAVHGEKLHLFCKDDGKVL 487
N+RP Q+A++V+N++ + + +E LC H EKLH +C+DDGK+L
Sbjct: 61 TKENIRPVWQLASLVENIERLKVDTGRQPGEVAREQQDTRLCERHQEKLHYYCEDDGKLL 120
Query: 488 CWVCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGK 667
C +C +S++HR H V +E+AAQ ++EK+ L LR +++ + +A A K
Sbjct: 121 CVMCRESREHRPHMAVLVEKAAQPHREKILNHLSTLRRDRDKIQGFQAKGEADILAELKK 180
Query: 668 VEAHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIA 847
++ + RI F + F + R + L ++I+
Sbjct: 181 LQDQRQRILAAFEQGHQFLWEREQHLLDQLAKLEQEVTEGREKYKTRGDGELARLAQVIS 240
Query: 848 ELERRSRGPMLELLQ 892
ELE +++ P EL+Q
Sbjct: 241 ELEGKAQQPAAELMQ 255
>ref|XP_003123673.2| PREDICTED: e3 ubiquitin-protein ligase TRIM17-like [Sus scrofa].
Length = 528
Score = 144 bits (364), Expect = 8e-35
Identities = 92/254 (36%), Positives = 129/254 (50%), Gaps = 12/254 (4%)
Frame = +2
Query: 167 ALPLAR-MWDEVTCSICLDPMVEPVSIECGHSFCQECIS---EVGKD--------GGSVC 310
A+ LAR + +E TCSICLD +PV CGH+FC+ECI E K G C
Sbjct: 56 AVELARKLQEEATCSICLDYFTDPVMTACGHNFCRECIQLTWEKAKGQKRRRKQKGSFPC 115
Query: 311 PVCRQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLC 490
P CR+ RNLRPNR ++ + EM++ +LC VH E L LFC+DD +C
Sbjct: 116 PECRELSPQRNLRPNR----LLTKVAEMARQHPSLHSRDLCQVHKELLKLFCEDDQSPIC 171
Query: 491 WVCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKV 670
+C +SQ+HR H +VPIEEA QEY+ KL+ +E LR + + L+A A W+ KV
Sbjct: 172 VICRESQEHRPHRVVPIEEAVQEYKLKLEKDMEYLREEMMKTGNLQAKEEQTLAEWQEKV 231
Query: 671 EAHKLRIHEEFVRQKNFXXXXXXXXXXXXXXXXXXXXXXXGATEARLAQQSQALQELIAE 850
+ + I EF + F + A L QQS +L+ L+ +
Sbjct: 232 KERREHIMVEFEKMDLFLMEEKQRLLQALKKEEEEMVAKLQKSIALLEQQSHSLEMLLLQ 291
Query: 851 LERRSRGPMLELLQ 892
LE ++ L+ LQ
Sbjct: 292 LEDKNERTPLQKLQ 305
>ref|NP_001121951.1| tripartite motif-containing protein 39 [Sus scrofa].
Length = 488
Score = 143 bits (360), Expect = 2e-34
Identities = 73/186 (39%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Frame = +2
Query: 152 STMASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD--GGSVCPVCRQ 325
S ++A L + E +CS+CL+ + EPV IECGH+FC+ CI+ +D CPVCR+
Sbjct: 12 SAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK 71
Query: 326 HFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVCSQ 505
R+LRPNRQ+ +MV+ K++ ++ LC H E L LFC +D + +C +C+
Sbjct: 72 TSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLICAI 131
Query: 506 SQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQEQAEKLEADIATKRAAWKGKVEAHKL 685
S HR HT+VP+++A QEY+EKLQ LE L K ++ + ++ K K VE+ +
Sbjct: 132 SHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVESRRQ 191
Query: 686 RIHEEF 703
+I +EF
Sbjct: 192 QILKEF 197
>ref|XP_003357194.1| PREDICTED: tripartite motif-containing protein 6-like [Sus scrofa].
Length = 157
Score = 140 bits (354), Expect = 1e-33
Identities = 66/142 (46%), Positives = 97/142 (68%), Gaps = 6/142 (4%)
Frame = +2
Query: 158 MASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKD------GGSVCPVC 319
M SA+ L + +EVTC +CL+ + +P+SI+CGHSFCQ CI++ ++ G S CPVC
Sbjct: 1 MTSAV-LVDIQEEVTCPLCLELLTDPLSIDCGHSFCQACITQNSEEWRMDQGGESSCPVC 59
Query: 320 RQHFLLRNLRPNRQVANMVDNLKEMSQGVKEGPQWELCAVHGEKLHLFCKDDGKVLCWVC 499
+ + NLRPNR +AN+ + L+E+ G + LCA HGEKL LFC++DG+++CW+C
Sbjct: 60 QTRYRPGNLRPNRHLANIAERLREVVLGSGTQLKVILCAHHGEKLQLFCREDGQLICWLC 119
Query: 500 SQSQKHRDHTMVPIEEAAQEYQ 565
++Q+HR H +EE AQEYQ
Sbjct: 120 ERAQEHRGHHTFLMEEVAQEYQ 141
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,594,612
Number of extensions: 1078153
Number of successful extensions: 5589
Number of sequences better than 1.0e-05: 58
Number of HSP's gapped: 5463
Number of HSP's successfully gapped: 62
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003079
(1257 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 890 0.0
Sscrofa_Chr01 66 5e-08
Sscrofa_Chr13 60 3e-06
Sscrofa_Chr08 60 3e-06
Sscrofa_Chr05 60 3e-06
>Sscrofa_Chr09
|| Length = 153670197
Score = 890 bits (449), Expect = 0.0
Identities = 455/457 (99%)
Strand = Plus / Plus
Query: 110 aggccaccccgagatctccccagcgctgcttcatagcccggcagcaccatggcctcagca 169
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537202 aggccaccccgagatctcctcagcgctgcttcatagcccggcagcaccatggcctcagca 6537261
Query: 170 ctgcccttggcaaggatgtgggatgaggtcacgtgctccatctgcctggatcccatggtg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537262 ctgcccttggcaaggatgtgggatgaggtcacgtgctccatctgcctggatcccatggtg 6537321
Query: 230 gagcccgtgagcatcgaatgtggccacagcttctgccaggaatgcatctccgaggttggg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537322 gagcccgtgagcatcgaatgtggccacagcttctgccaggaatgcatctccgaggttggg 6537381
Query: 290 aaggatgggggcagcgtctgtcctgtgtgccggcagcacttcctgctcaggaacctccgg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537382 aaggatgggggcagcgtctgtcctgtgtgccggcagcacttcctgctcaggaacctccgg 6537441
Query: 350 cccaatcggcaggtggccaacatggtggataacctcaaagagatgagccagggggtcaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537442 cccaatcggcaggtggccaacatggtggataacctcaaagagatgagccagggggtcaag 6537501
Query: 410 gaaggcccgcagtgggagctgtgtgcggtgcacggagagaagcttcacctgttctgtaag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537502 gaaggcccgcagtgggagctgtgtgcggtgcacggagagaagcttcacctgttctgtaag 6537561
Query: 470 gacgatgggaaggtcctttgctgggtgtgttcccagtcccagaaacaccgggaccacacc 529
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6537562 gacgatgggaaggtcctttgctgggtgtgttcccagtcccggaaacaccgggaccacacc 6537621
Query: 530 atggtccccattgaggaggcggctcaggagtaccagg 566
|||||||||||||||||||||||||||||||||||||
Sbjct: 6537622 atggtccccattgaggaggcggctcaggagtaccagg 6537658
Score = 642 bits (324), Expect = 0.0
Identities = 389/407 (95%), Gaps = 5/407 (1%)
Strand = Plus / Plus
Query: 659 aaggggaaggttgaggcccacaaactgaggatccacgaagagtttgtccggcagaaaaac 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539360 aaggggaaggttgaggcccacaaactgaggatccacgaagagtttgtccggcagaaaaac 6539419
Query: 719 ttcctggcagaagaggagcagaggcagctgcagaagctggaggaggaggagcgggaacag 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539420 ttcctggcagaagaggagcagaggcagctgcagaagctggaggaggaggagcgggaacag 6539479
Query: 779 ctgaaagccctgggggccacagaagccaggctggcccagcagagccaggccctgcaggag 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539480 ctgaaagccctgggggccacagaagccaggctggcccagcagagccaggccctgcaggag 6539539
Query: 839 ctgatcgcagagctggagcggaggagtcggggccccatgctggagctgctacaggtgagg 898
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539540 ctgatcgcagagctggagaggaggagtcggggccccatgctggagctgctacaggtgagg 6539599
Query: 899 cctgaggacagnnnnnnnnnnaccccgagagtcaaggagaagttgaaaaaagccagaggg 958
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6539600 cctgaggacag-cccccccctaccccgagagtcaaggagaagttgaaaaaagccagaggg 6539658
Query: 959 agcgccccttgtggctcagtgggttaaggaccaaacacacagtgtccgtggagggtgcaa 1018
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 6539659 agcgccccttgtggctcagtgggttaaggaccagacacacagtgtccgt-gagggtgcag 6539717
Query: 1019 gttcggggttcccttcctggccctcacttggtggaattaaggatcca 1065
|||| |||||| |||||||| ||||||||||||| ||||||||||||
Sbjct: 6539718 gttc-gggttcacttcctgg-cctcacttggtgg-attaaggatcca 6539761
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 563 caggagaagctccaggtggcactcgagaaactcagaaataaacaggagcaggctgagaag 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538158 caggagaagctccaggtggcactcgagaaactcagaaataaacaggagcaggctgagaag 6538217
Query: 623 ctggaagcggatattgcaacgaagagagcagcctggaagg 662
||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538218 ctggaagcggatattgcaacgaagagagcagcctggaagg 6538257
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 11 ggttccctcgaccctaacccggcggttttccccgtgctgccgtccgcccgggaggaggct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6536337 ggttccctcgaccctaacccggcggttttccccgtgctgccgtccgcccgggaggaggct 6536396
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 71 aaacttggagccagctattatctgcggagtcccttgaaaagg 112
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6536164 aaacttggagccagctattatctgcggagtcccttgaaaagg 6536205
Score = 69.9 bits (35), Expect = 3e-09
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 229 ggagcccgtgagcatcgaatgtggccacagcttctgcca 267
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 6138873 ggagcccgtgagcatcgactgtggccacagcttctgcca 6138911
>Sscrofa_Chr01
|| Length = 315321322
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 963 ccccttgtggctcagtgggttaaggaccaaaca 995
|||||||||||||||||||||||||||||||||
Sbjct: 226073925 ccccttgtggctcagtgggttaaggaccaaaca 226073893
>Sscrofa_Chr13
|| Length = 218635234
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 953 agagggagcgccccttgtggctcagtgggttaag 986
||||||||| ||||||||||||||||||||||||
Sbjct: 12603823 agagggagctccccttgtggctcagtgggttaag 12603856
>Sscrofa_Chr08
|| Length = 148491826
Score = 60.0 bits (30), Expect = 3e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 963 ccccttgtggctcagtgggttaaggaccaa 992
||||||||||||||||||||||||||||||
Sbjct: 17895213 ccccttgtggctcagtgggttaaggaccaa 17895184
>Sscrofa_Chr05
|| Length = 111506441
Score = 60.0 bits (30), Expect = 3e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 964 cccttgtggctcagtgggttaaggaccaaa 993
||||||||||||||||||||||||||||||
Sbjct: 41243728 cccttgtggctcagtgggttaaggaccaaa 41243699
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,255,463
Number of extensions: 50259
Number of successful extensions: 50259
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 50259
Number of HSP's successfully gapped: 11
Length of query: 1257
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1236
Effective length of database: 2,808,413,156
Effective search space: 3471198660816
Effective search space used: 3471198660816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)