Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003082
(970 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098873.1| intraflagellar transport protein 57 homolog ... 432 e-121
>ref|NP_001098873.1| intraflagellar transport protein 57 homolog [Bos taurus].
Length = 429
Score = 432 bits (1112), Expect = e-121
Identities = 220/284 (77%), Positives = 223/284 (78%)
Frame = +1
Query: 91 VVTPSGLEDGVSXXXXXXXXXXXXXXXXXXXYHMFVVMEDLVEKLKLLRYEEDLLRKNNL 270
VVTPSGLED VS YHMFVVMEDLVEKLKLLRYEE+LLRKNNL
Sbjct: 7 VVTPSGLEDEVSRSRGEGAGEMVVERGPGAAYHMFVVMEDLVEKLKLLRYEENLLRKNNL 66
Query: 271 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGHPFEQPQEYDDPNATISNILSELRSFG 450
KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAG PFEQPQEYDDPNA ISNILSELRSFG
Sbjct: 67 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNAIISNILSELRSFG 126
Query: 451 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYPXXXXXXXXXXXXXXXXX 630
RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRP YP
Sbjct: 127 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPAYPVEELEEETVAEDDAELT 186
Query: 631 LNKXXXXXXXXXXXXXXXXIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 810
LNK IDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV
Sbjct: 187 LNKVDEEFVEEETDNEENFIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 246
Query: 811 LPQLKVTIRTDNKDWRIHVDPMHQHQSGIGSALKETRGFLGTTH 942
LPQLKVTIRTDNKDWRIHVD MHQH+SGI SALKET+GFL H
Sbjct: 247 LPQLKVTIRTDNKDWRIHVDQMHQHKSGIESALKETKGFLDRLH 290
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,012,963
Number of extensions: 818410
Number of successful extensions: 2400
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2398
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003082
(970 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535730.2| PREDICTED: similar to huntingtin-interacting pr... 424 e-119
>ref|XP_535730.2| PREDICTED: similar to huntingtin-interacting protein-1 protein
interactor [Canis familiaris].
Length = 570
Score = 424 bits (1091), Expect = e-119
Identities = 215/284 (75%), Positives = 220/284 (77%)
Frame = +1
Query: 91 VVTPSGLEDGVSXXXXXXXXXXXXXXXXXXXYHMFVVMEDLVEKLKLLRYEEDLLRKNNL 270
V P+G+EDGV YHMFVVMEDLVEKLKLL YEEDLLRK+NL
Sbjct: 148 VAAPAGVEDGVPRSRGEGAGEAVVERGPGAAYHMFVVMEDLVEKLKLLHYEEDLLRKHNL 207
Query: 271 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGHPFEQPQEYDDPNATISNILSELRSFG 450
KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAG PFEQ QEYDDPNATISNILSELR FG
Sbjct: 208 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQHQEYDDPNATISNILSELRLFG 267
Query: 451 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYPXXXXXXXXXXXXXXXXX 630
RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYP
Sbjct: 268 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYPVEELEEETVPEDDAELT 327
Query: 631 LNKXXXXXXXXXXXXXXXXIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 810
LNK IDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV
Sbjct: 328 LNKVDEEFVEEETDNEENFIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 387
Query: 811 LPQLKVTIRTDNKDWRIHVDPMHQHQSGIGSALKETRGFLGTTH 942
LPQLKVTIRTDNKDWRIHVD MHQH+SGI SALKET+GFL H
Sbjct: 388 LPQLKVTIRTDNKDWRIHVDQMHQHKSGIESALKETKGFLDKLH 431
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,435,860
Number of extensions: 843111
Number of successful extensions: 2322
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2321
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003082
(970 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060480.1| intraflagellar transport protein 57 homolog [Ho... 422 e-118
>ref|NP_060480.1| intraflagellar transport protein 57 homolog [Homo sapiens].
Length = 429
Score = 422 bits (1084), Expect = e-118
Identities = 214/284 (75%), Positives = 219/284 (77%)
Frame = +1
Query: 91 VVTPSGLEDGVSXXXXXXXXXXXXXXXXXXXYHMFVVMEDLVEKLKLLRYEEDLLRKNNL 270
VVT SGLEDGV YHMFVVMEDLVEKLKLLRYEE+ LRK+NL
Sbjct: 7 VVTTSGLEDGVPRSRGEGTGEVVLERGPGAAYHMFVVMEDLVEKLKLLRYEEEFLRKSNL 66
Query: 271 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGHPFEQPQEYDDPNATISNILSELRSFG 450
K PSRHYFALPTNPGEQFYMFCTLAAWLINKAG PFEQPQEYDDPNATISNILSELRSFG
Sbjct: 67 KAPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNATISNILSELRSFG 126
Query: 451 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYPXXXXXXXXXXXXXXXXX 630
RTADFPPSKLKSGYGEHVCYVLDC AEEALKYIGFTWKRP YP
Sbjct: 127 RTADFPPSKLKSGYGEHVCYVLDCFAEEALKYIGFTWKRPIYPVEELEEESVAEDDAELT 186
Query: 631 LNKXXXXXXXXXXXXXXXXIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 810
LNK IDLNVLKAQTY LDMNE+AKQEDILESTTDAAEWSLEVERV
Sbjct: 187 LNKVDEEFVEEETDNEENFIDLNVLKAQTYHLDMNETAKQEDILESTTDAAEWSLEVERV 246
Query: 811 LPQLKVTIRTDNKDWRIHVDPMHQHQSGIGSALKETRGFLGTTH 942
LPQLKVTIRTDNKDWRIHVD MHQH+SGI SALKET+GFL H
Sbjct: 247 LPQLKVTIRTDNKDWRIHVDQMHQHRSGIESALKETKGFLDKLH 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,870,229
Number of extensions: 834965
Number of successful extensions: 2191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2185
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003082
(970 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082956.2| intraflagellar transport protein 57 homolog [Mu... 421 e-118
>ref|NP_082956.2| intraflagellar transport protein 57 homolog [Mus musculus].
Length = 429
Score = 421 bits (1082), Expect = e-118
Identities = 213/284 (75%), Positives = 221/284 (77%)
Frame = +1
Query: 91 VVTPSGLEDGVSXXXXXXXXXXXXXXXXXXXYHMFVVMEDLVEKLKLLRYEEDLLRKNNL 270
V+ PSGL+DGVS YHMFVVMEDLVEKLKLLRYEE+LLRK+NL
Sbjct: 7 VIPPSGLDDGVSRARGEGAGEAVVERGPGAAYHMFVVMEDLVEKLKLLRYEEELLRKSNL 66
Query: 271 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGHPFEQPQEYDDPNATISNILSELRSFG 450
KPPSRHYFALPTNPGEQFYMFCTLAAWLINK G FEQPQEYDDPNATISNILSELRSFG
Sbjct: 67 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKTGRAFEQPQEYDDPNATISNILSELRSFG 126
Query: 451 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYPXXXXXXXXXXXXXXXXX 630
RTADFPPSKLKSGYGE VCYVLDCLAEEALKYIGFTWKRP+YP
Sbjct: 127 RTADFPPSKLKSGYGEQVCYVLDCLAEEALKYIGFTWKRPSYPVEELEEETVPEDDAELT 186
Query: 631 LNKXXXXXXXXXXXXXXXXIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 810
L+K IDLNVLKAQTYRLD NESAKQEDILESTTDAAEWSLEVERV
Sbjct: 187 LSKVDEEFVEEETDNEENFIDLNVLKAQTYRLDTNESAKQEDILESTTDAAEWSLEVERV 246
Query: 811 LPQLKVTIRTDNKDWRIHVDPMHQHQSGIGSALKETRGFLGTTH 942
LPQLKVTIRTDNKDWRIHVD MHQH+SGI SALKET+GFL H
Sbjct: 247 LPQLKVTIRTDNKDWRIHVDQMHQHKSGIESALKETKGFLDKLH 290
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,852,879
Number of extensions: 705539
Number of successful extensions: 1922
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1920
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003082
(970 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132734.1| PREDICTED: intraflagellar transport protein ... 445 e-125
>ref|XP_003132734.1| PREDICTED: intraflagellar transport protein 57 homolog [Sus
scrofa].
Length = 429
Score = 445 bits (1144), Expect = e-125
Identities = 225/284 (79%), Positives = 227/284 (79%)
Frame = +1
Query: 91 VVTPSGLEDGVSXXXXXXXXXXXXXXXXXXXYHMFVVMEDLVEKLKLLRYEEDLLRKNNL 270
VVTPSGLEDGVS YHMFVVMEDLVEKLKLLRYEEDLLRKNNL
Sbjct: 7 VVTPSGLEDGVSRSRGEGAGEVVVERGPGAAYHMFVVMEDLVEKLKLLRYEEDLLRKNNL 66
Query: 271 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGHPFEQPQEYDDPNATISNILSELRSFG 450
KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGHPFEQPQEYDDPNATISNILSELRSFG
Sbjct: 67 KPPSRHYFALPTNPGEQFYMFCTLAAWLINKAGHPFEQPQEYDDPNATISNILSELRSFG 126
Query: 451 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYPXXXXXXXXXXXXXXXXX 630
RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYP
Sbjct: 127 RTADFPPSKLKSGYGEHVCYVLDCLAEEALKYIGFTWKRPTYPVEELEEETVAEDDAELT 186
Query: 631 LNKXXXXXXXXXXXXXXXXIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 810
LNK IDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV
Sbjct: 187 LNKVDEEFVEEETDNEENFIDLNVLKAQTYRLDMNESAKQEDILESTTDAAEWSLEVERV 246
Query: 811 LPQLKVTIRTDNKDWRIHVDPMHQHQSGIGSALKETRGFLGTTH 942
LPQLKVTIRTDNKDWRIHVD MHQH+SGI SALKET+GFL H
Sbjct: 247 LPQLKVTIRTDNKDWRIHVDQMHQHKSGIESALKETKGFLDKLH 290
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,218,148
Number of extensions: 521789
Number of successful extensions: 1420
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1417
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003082
(970 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 547 e-153
>Sscrofa_Chr13
|| Length = 218635234
Score = 547 bits (276), Expect = e-153
Identities = 282/284 (99%)
Strand = Plus / Plus
Query: 1 tggttgctgcagcgcaggccacggaggtctgtgggtccgagctcgcgctgcgctctttcg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 160336877 tggttgctgcagcgcaggccacggaggtctgtgggtccgagctcacgctgcgctctttcg 160336936
Query: 61 gaccgttttgctatggcggccgccgcagcagtggtcacaccgtcgggtttggaggatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160336937 gaccgttttgctatggcggccgccgcagcagtggtcacaccgtcgggtttggaggatggg 160336996
Query: 121 gtgtctcggtcccgtggcgaagaagcaggggaggtggtcgtggagcgggggcctggcgcg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 160336997 gtgtctcggtcccgtggcgaaggagcaggggaggtggtcgtggagcgggggcctggcgcg 160337056
Query: 181 gcctaccacatgttcgtagtgatggaggacctagtggagaagttgaagctgctccgttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160337057 gcctaccacatgttcgtagtgatggaggacctagtggagaagttgaagctgctccgttat 160337116
Query: 241 gaggaggatctcctccggaagaacaatctgaagcccccgtccag 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160337117 gaggaggatctcctccggaagaacaatctgaagcccccgtccag 160337160
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 282 cagacactattttgcactgcctaccaatcctggggaacagttctacatgttttgcactct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160339701 cagacactattttgcactgcctaccaatcctggggaacagttctacatgttttgcactct 160339760
Query: 342 tgctgcttggttaattaacaaagcgggacacccctttgagcagcctcaagaatacgatga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160339761 tgctgcttggttaattaacaaagcgggacacccctttgagcagcctcaagaatacgatga 160339820
Query: 402 ccctaatgcaacgatttctaacatattatctgagcttcgatcatt 446
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160339821 ccctaatgcaacgatttctaacatattatctgagcttcgatcatt 160339865
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 726 ggatatgaacgagtctgccaaacaagaagatattttagaatccacaacagatgctgcgga 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160368091 ggatatgaacgagtctgccaaacaagaagatattttagaatccacaacagatgctgcgga 160368150
Query: 786 atggagtctagaagtggaacgtgtgctaccacaactgaaagtcacgatcaggactgacaa 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160368151 atggagtctagaagtggaacgtgtgctaccacaactgaaagtcacgatcaggactgacaa 160368210
Query: 846 caagg 850
|||||
Sbjct: 160368211 caagg 160368215
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 448 gggagaactgcagattttcctccttcaaaattaaagtcaggttatggagagcatgtatgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160340663 gggagaactgcagattttcctccttcaaaattaaagtcaggttatggagagcatgtatgc 160340722
Query: 508 tatgttcttgactgtttagctgaagaagcattaaaatatattggtttcacctggaaaag 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160340723 tatgttcttgactgtttagctgaagaagcattaaaatatattggtttcacctggaaaag 160340781
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 565 agaccaacatacccagtggaagaattagaagaagaaactgttgcggaagatgatgcagaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160345833 agaccaacatacccagtggaagaattagaagaagaaactgttgcggaagatgatgcagaa 160345892
Query: 625 ttaacattaaataaagtggatgaagaatttgtgg 658
||||||||||||||||||||||||||||||||||
Sbjct: 160345893 ttaacattaaataaagtggatgaagaatttgtgg 160345926
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 657 ggaagaggaaacagacaatgaagaaaactttattgatctcaatgttttgaaggctcagac 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160350779 ggaagaggaaacagacaatgaagaaaactttattgatctcaatgttttgaaggctcagac 160350838
Query: 717 ctatcgcttgg 727
|||||||||||
Sbjct: 160350839 ctatcgcttgg 160350849
Score = 119 bits (60), Expect = 3e-24
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 848 aggattggagaatccatgttgacccaatgcaccagcaccaaagtggaattggatctgctc 907
|||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 160389406 aggattggagaatccatgttgaccaaatgcaccagcacaaaagtggaattgaatctgctc 160389465
Query: 908 taaaggagacca 919
||||||||||||
Sbjct: 160389466 taaaggagacca 160389477
Score = 87.7 bits (44), Expect = 1e-14
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 848 aggattggagaatccatgttgacccaatgcaccagcaccaaagtggaattggatctgctc 907
||||||||||||||||||| |||| ||||| ||||||| ||| |||||||| | ||||||
Sbjct: 205149038 aggattggagaatccatgtggaccaaatgccccagcacaaaaatggaattgaaactgctc 205148979
Query: 908 taaaggagacca 919
||||||||||||
Sbjct: 205148978 taaaggagacca 205148967
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,190,155
Number of extensions: 192
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 8
Length of query: 970
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 949
Effective length of database: 2,808,413,156
Effective search space: 2665184085044
Effective search space used: 2665184085044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)