Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003092
(1868 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070343.2| prolactin regulatory element binding protein... 698 0.0
>ref|NP_001070343.2| prolactin regulatory element binding protein [Bos taurus].
Length = 418
Score = 698 bits (1801), Expect = 0.0
Identities = 351/412 (85%), Positives = 358/412 (86%)
Frame = +2
Query: 224 PELYRAPFPLYALQVEPSXXXXXXXXXXXXXKTGIKNGVHFLQLERIHGXXXXXXXXXXD 403
PELYRAPFPLYAL+V+PS KTGIKNGVHFLQLE+I+G D
Sbjct: 7 PELYRAPFPLYALRVDPSAGLLIAAGGGGAAKTGIKNGVHFLQLEQINGRLSASLLHSHD 66
Query: 404 TETRATMXXXXXXXXXXXXQDARCQLLRFQTQQQKGKNKAEKAASKEQGPRQRKGAAPAE 583
TETRATM QDA CQLLRFQ QQKGKNKAEKA SKEQGPRQRKGAAPAE
Sbjct: 67 TETRATMNLALAGNILAAGQDAHCQLLRFQIHQQKGKNKAEKAGSKEQGPRQRKGAAPAE 126
Query: 584 KKSGAETHQEGLEFSVENLQAVQTDFSPDPLQKVVRFNHDATLLATGGTDGYVRVWKVPT 763
KKSGAETHQEG+EFSVENL VQTDFS DPLQKVV FNHD TLLATGGTDG VRVWKVPT
Sbjct: 127 KKSGAETHQEGVEFSVENLHEVQTDFSRDPLQKVVCFNHDNTLLATGGTDGCVRVWKVPT 186
Query: 764 LEKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSNTPY 943
LEKVLEF+AHEGEIEDLA+GPDGKLVTVG DLKASVWQKDQLVTQLHWQENGPTFSNTPY
Sbjct: 187 LEKVLEFKAHEGEIEDLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQENGPTFSNTPY 246
Query: 944 RYQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISC 1123
RYQACRFG VPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTR CGHEVISC
Sbjct: 247 RYQACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRPCGHEVISC 306
Query: 1124 LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH 1303
LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH
Sbjct: 307 LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH 366
Query: 1304 ETALFSVAVDSRCQLHLLPSRRSVPVWXXXXXCVGLIVMTILLLQSAFPGFL 1459
ETALFSVAVDSRCQLHLLPSRRS PVW CVGLIVMTILLLQSAFPGFL
Sbjct: 367 ETALFSVAVDSRCQLHLLPSRRSAPVWLLLLLCVGLIVMTILLLQSAFPGFL 418
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 81,322,055
Number of extensions: 2606315
Number of successful extensions: 12026
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11972
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 514
Effective length of database: 14,107,870
Effective search space: 7251445180
Effective search space used: 7251445180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003092
(1868 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540122.2| PREDICTED: similar to Prolactin regulatory elem... 689 0.0
Alignment gi|XP_860312.1| PREDICTED: similar to Prolactin regulatory elem... 450 e-126
>ref|XP_540122.2| PREDICTED: similar to Prolactin regulatory element-binding protein
(Mammalian guanine nucleotide exchange factor mSec12)
isoform 1 [Canis familiaris].
Length = 418
Score = 689 bits (1777), Expect = 0.0
Identities = 344/412 (83%), Positives = 354/412 (85%)
Frame = +2
Query: 224 PELYRAPFPLYALQVEPSXXXXXXXXXXXXXKTGIKNGVHFLQLERIHGXXXXXXXXXXD 403
PELYRAPFPLYALQV+PS KTGIKNGVHFLQLE+I+G D
Sbjct: 7 PELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLEQINGRLSASLLHSHD 66
Query: 404 TETRATMXXXXXXXXXXXXQDARCQLLRFQTQQQKGKNKAEKAASKEQGPRQRKGAAPAE 583
TETRATM QDA CQLLRFQT QQKGK K EKA SKEQGPRQRKGAAP E
Sbjct: 67 TETRATMNLALAGNILAAGQDAHCQLLRFQTHQQKGKTKVEKAGSKEQGPRQRKGAAPVE 126
Query: 584 KKSGAETHQEGLEFSVENLQAVQTDFSPDPLQKVVRFNHDATLLATGGTDGYVRVWKVPT 763
KK GAETHQEG+E SVENL+AVQTDFSPDP QKVV FNHD TLLATGGTDGYVR+WKVP+
Sbjct: 127 KKPGAETHQEGIELSVENLKAVQTDFSPDPFQKVVCFNHDNTLLATGGTDGYVRIWKVPS 186
Query: 764 LEKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSNTPY 943
LEKVLEFRAHEGEIEDLA+GPDGKLVTVG DLKASVWQKDQLVTQLHWQENGPTFSNTPY
Sbjct: 187 LEKVLEFRAHEGEIEDLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQENGPTFSNTPY 246
Query: 944 RYQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISC 1123
RYQACRFG VPDQP LRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRT+SCGHEVISC
Sbjct: 247 RYQACRFGHVPDQPTRLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISC 306
Query: 1124 LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH 1303
LSVSESGTFLGLGTVTGSVAIYIAFSLQ LYYV+EAHGIVVTDVAFLPEKGRGPELLG H
Sbjct: 307 LSVSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPELLGFH 366
Query: 1304 ETALFSVAVDSRCQLHLLPSRRSVPVWXXXXXCVGLIVMTILLLQSAFPGFL 1459
ETALFSVAVDSRCQLHLLPSRRSVPVW CVGLIVMTILLLQS FPGFL
Sbjct: 367 ETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIVMTILLLQSVFPGFL 418
>ref|XP_860312.1| PREDICTED: similar to Prolactin regulatory element-binding protein
(Mammalian guanine nucleotide exchange factor mSec12)
isoform 2 [Canis familiaris].
Length = 242
Score = 450 bits (1157), Expect = e-126
Identities = 222/241 (92%), Positives = 227/241 (94%), Gaps = 1/241 (0%)
Frame = +2
Query: 740 VRVW-KVPTLEKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQEN 916
V VW +VP+LEKVLEFRAHEGEIEDLA+GPDGKLVTVG DLKASVWQKDQLVTQLHWQEN
Sbjct: 2 VMVWLQVPSLEKVLEFRAHEGEIEDLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQEN 61
Query: 917 GPTFSNTPYRYQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTR 1096
GPTFSNTPYRYQACRFG VPDQP LRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRT+
Sbjct: 62 GPTFSNTPYRYQACRFGHVPDQPTRLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTK 121
Query: 1097 SCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKG 1276
SCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFSLQ LYYV+EAHGIVVTDVAFLPEKG
Sbjct: 122 SCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKG 181
Query: 1277 RGPELLGSHETALFSVAVDSRCQLHLLPSRRSVPVWXXXXXCVGLIVMTILLLQSAFPGF 1456
RGPELLG HETALFSVAVDSRCQLHLLPSRRSVPVW CVGLIVMTILLLQS FPGF
Sbjct: 182 RGPELLGFHETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIVMTILLLQSVFPGF 241
Query: 1457 L 1459
L
Sbjct: 242 L 242
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,466,771
Number of extensions: 2665818
Number of successful extensions: 12559
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12493
Number of HSP's successfully gapped: 2
Length of query: 622
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 513
Effective length of database: 15,240,880
Effective search space: 7818571440
Effective search space used: 7818571440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003092
(1868 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037520.1| prolactin regulatory element-binding protein [H... 680 0.0
>ref|NP_037520.1| prolactin regulatory element-binding protein [Homo sapiens].
Length = 417
Score = 680 bits (1755), Expect = 0.0
Identities = 342/412 (83%), Positives = 354/412 (85%)
Frame = +2
Query: 224 PELYRAPFPLYALQVEPSXXXXXXXXXXXXXKTGIKNGVHFLQLERIHGXXXXXXXXXXD 403
PELYRAPFPLYALQV+PS KTGIKNGVHFLQLE I+G D
Sbjct: 7 PELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSASLLHSHD 66
Query: 404 TETRATMXXXXXXXXXXXXQDARCQLLRFQTQQQKGKNKAEKAASKEQGPRQRKGAAPAE 583
TETRATM QDA CQLLRFQ QQ+G NKAEKA SKEQGPRQRKGAAPAE
Sbjct: 67 TETRATMNLALAGDILAAGQDAHCQLLRFQAHQQQG-NKAEKAGSKEQGPRQRKGAAPAE 125
Query: 584 KKSGAETHQEGLEFSVENLQAVQTDFSPDPLQKVVRFNHDATLLATGGTDGYVRVWKVPT 763
KK GAET EGLE VENLQAVQTDFS DPLQKVV FNHD TLLATGGTDGYVRVWKVP+
Sbjct: 126 KKCGAETQHEGLELRVENLQAVQTDFSSDPLQKVVCFNHDNTLLATGGTDGYVRVWKVPS 185
Query: 764 LEKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSNTPY 943
LEKVLEF+AHEGEIEDLA+GPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFS+TPY
Sbjct: 186 LEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSSTPY 245
Query: 944 RYQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISC 1123
RYQACRFG VPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGS FLPLRT+SCGHEV+SC
Sbjct: 246 RYQACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSNFLPLRTKSCGHEVVSC 305
Query: 1124 LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH 1303
L VSESGTFLGLGTVTGSVAIYIAFSLQ LYYV+EAHGIVVTDVAFLPEKGRGPELLGSH
Sbjct: 306 LDVSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPELLGSH 365
Query: 1304 ETALFSVAVDSRCQLHLLPSRRSVPVWXXXXXCVGLIVMTILLLQSAFPGFL 1459
ETALFSVAVDSRCQLHLLPSRRSVPVW CVGLI++TILLLQSAFPGFL
Sbjct: 366 ETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQSAFPGFL 417
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 82,875,498
Number of extensions: 2613383
Number of successful extensions: 11788
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11714
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 513
Effective length of database: 14,704,088
Effective search space: 7543197144
Effective search space used: 7543197144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003092
(1868 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057912.2| prolactin regulatory element-binding protein [M... 641 0.0
>ref|NP_057912.2| prolactin regulatory element-binding protein [Mus musculus].
Length = 417
Score = 641 bits (1654), Expect = 0.0
Identities = 322/411 (78%), Positives = 343/411 (83%)
Frame = +2
Query: 227 ELYRAPFPLYALQVEPSXXXXXXXXXXXXXKTGIKNGVHFLQLERIHGXXXXXXXXXXDT 406
ELYRAPFPLYAL+++P KTGIKNGVHFLQLE I+G DT
Sbjct: 8 ELYRAPFPLYALRIDPKTGLLIAAGGGGAAKTGIKNGVHFLQLELINGCLSASLLHSHDT 67
Query: 407 ETRATMXXXXXXXXXXXXQDARCQLLRFQTQQQKGKNKAEKAASKEQGPRQRKGAAPAEK 586
ETRATM QDA+CQLLRFQ QQKG +KAEK+ SKEQGPRQRKGA PAEK
Sbjct: 68 ETRATMNLALAGDILAAGQDAQCQLLRFQVHQQKG-SKAEKSGSKEQGPRQRKGAPPAEK 126
Query: 587 KSGAETHQEGLEFSVENLQAVQTDFSPDPLQKVVRFNHDATLLATGGTDGYVRVWKVPTL 766
KSGA+ H EG+E V+NL+AVQTDFS +PLQKVV FNHD TLLATGGTDG+VRVWKVP+L
Sbjct: 127 KSGAQVHPEGVELKVKNLEAVQTDFSNEPLQKVVCFNHDNTLLATGGTDGHVRVWKVPSL 186
Query: 767 EKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSNTPYR 946
EKVLEF+AHEGEI DL +GPDGKLVTVG D KASVWQKDQLVTQL WQENGP SNTPYR
Sbjct: 187 EKVLEFKAHEGEIGDLTLGPDGKLVTVGWDFKASVWQKDQLVTQLQWQENGPASSNTPYR 246
Query: 947 YQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISCL 1126
YQACRFG VPDQ GLRLFTVQIPHKRLRQPPPCYLTAWD STFLPLRTRSCGHEVISCL
Sbjct: 247 YQACRFGQVPDQLGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCL 306
Query: 1127 SVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSHE 1306
SVS+SGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDV FLPEKG GP+LLG HE
Sbjct: 307 SVSDSGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVTFLPEKGCGPKLLGPHE 366
Query: 1307 TALFSVAVDSRCQLHLLPSRRSVPVWXXXXXCVGLIVMTILLLQSAFPGFL 1459
TALFSVAVDSRCQLHLLPSRRSVPVW CVGLI++TILLLQ+AFPGFL
Sbjct: 367 TALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQTAFPGFL 417
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,723,432
Number of extensions: 2159002
Number of successful extensions: 9481
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9429
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 515
Effective length of database: 12,403,707
Effective search space: 6387909105
Effective search space used: 6387909105
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003092
(1868 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125345.1| PREDICTED: prolactin regulatory element-bind... 742 0.0
>ref|XP_003125345.1| PREDICTED: prolactin regulatory element-binding protein [Sus scrofa].
Length = 418
Score = 742 bits (1915), Expect = 0.0
Identities = 372/412 (90%), Positives = 372/412 (90%)
Frame = +2
Query: 224 PELYRAPFPLYALQVEPSXXXXXXXXXXXXXKTGIKNGVHFLQLERIHGXXXXXXXXXXD 403
PELYRAPFPLYALQVEPS KTGIKNGVHFLQLERIHG D
Sbjct: 7 PELYRAPFPLYALQVEPSAGLLIAAGGGGAAKTGIKNGVHFLQLERIHGHLSASLLHSHD 66
Query: 404 TETRATMXXXXXXXXXXXXQDARCQLLRFQTQQQKGKNKAEKAASKEQGPRQRKGAAPAE 583
TETRATM QDARCQLLRFQTQQQKGKNKAEKAASKEQGPRQRKGAAPAE
Sbjct: 67 TETRATMNLALAGNILAAGQDARCQLLRFQTQQQKGKNKAEKAASKEQGPRQRKGAAPAE 126
Query: 584 KKSGAETHQEGLEFSVENLQAVQTDFSPDPLQKVVRFNHDATLLATGGTDGYVRVWKVPT 763
KKSGAETHQEGLEFSVENLQAVQTDFSPDPLQKVVRFNHDATLLATGGTDGYVRVWKVPT
Sbjct: 127 KKSGAETHQEGLEFSVENLQAVQTDFSPDPLQKVVRFNHDATLLATGGTDGYVRVWKVPT 186
Query: 764 LEKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSNTPY 943
LEKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSNTPY
Sbjct: 187 LEKVLEFRAHEGEIEDLAVGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTFSNTPY 246
Query: 944 RYQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISC 1123
RYQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISC
Sbjct: 247 RYQACRFGPVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISC 306
Query: 1124 LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH 1303
LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH
Sbjct: 307 LSVSESGTFLGLGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVAFLPEKGRGPELLGSH 366
Query: 1304 ETALFSVAVDSRCQLHLLPSRRSVPVWXXXXXCVGLIVMTILLLQSAFPGFL 1459
ETALFSVAVDSRCQLHLLPSRRSVPVW CVGLIVMTILLLQSAFPGFL
Sbjct: 367 ETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIVMTILLLQSAFPGFL 418
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,607,313
Number of extensions: 1690360
Number of successful extensions: 7838
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7794
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 517
Effective length of database: 8,729,747
Effective search space: 4513279199
Effective search space used: 4513279199
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003092
(1868 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 957 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 957 bits (483), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Plus
Query: 1368 ggagtgttcctgtgtggctgctgctgctgctgtgtgtcgggcttattgttatgaccatcc 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993947 ggagtgttcctgtgtggctgctgctgctgctgtgtgtcgggcttattgttatgaccatcc 118994006
Query: 1428 tgctgctccagagtgcctttccaggttttctttagcctccttgctcccagagaaccaggg 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118994007 tgctgctccagagtgcctttccaggttttctttagcctccttgctcccagagaaccaggg 118994066
Query: 1488 gcctgggcactgccacctctagaccagagtggaggcctggaccccactgctcactccact 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118994067 gcctgggcactgccacctctagaccagagtggaggcctggaccccactgctcactccact 118994126
Query: 1548 ggggcccacagctgaagttgcctctgatgagactactgggcaatgcctgcccttcccagt 1607
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118994127 ggggcccacagctgaggttgcctctgatgagactactgggcaatgcctgcccttcccagt 118994186
Query: 1608 taaagtttggctgtggcctcgtgcgaccctgagttctgggaaccttgtattcatcatctg 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118994187 taaagtttggctgtggcctcgtgcgaccctgagttctgggaaccttgtattcatcatctg 118994246
Query: 1668 tggatccgcccaggaccgtggtgtccttcttccctctacctaccagaagctccaaggtgg 1727
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 118994247 tggatccgcccaggaccgtggtgtccttcttccctctacctaccagaggctccaaggtgg 118994306
Query: 1728 ggcttgtccttcccccagaaatatgtgaagatgcccaagaacttggaggcactgctgtcc 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118994307 ggcttgtccttcccccagaaatatgtgaagatgcccaagaacttggaggcactgctgtcc 118994366
Query: 1788 ttcctgccgaaagccgttttctcctgctccccgcacagcctcgtggccggctgctcntca 1847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 118994367 ttcctgccgaaagccgttttctcctgctccccgcacagcctcgtggccggctgctctcca 118994426
Query: 1848 cangagcccctcccatttgct 1868
|| ||||||||||||||||||
Sbjct: 118994427 caggagcccctcccatttgct 118994447
Score = 662 bits (334), Expect = 0.0
Identities = 337/338 (99%)
Strand = Plus / Plus
Query: 3 gagaccgggtttgccggcccggggcagtgacagggatccttgtgtgtggttacggtttcg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118990873 gagaccgggtttgccggcccggggcagtgacagggatccttgtgtgtggttacggtttcg 118990932
Query: 63 gcttcccggtggcagggagaggggtctggggtcctctggcggccacaggaccgacgtcag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118990933 gcttcccggtggcagggagaggggtctggggtcctctggcggccacaggaccgacgtcag 118990992
Query: 123 ccgcggccggaaccacagtcgaaggccgggcgcggcatgtcccgggtgcctcgacgcagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118990993 ccgcggccggaaccacagtcgaaggccgggcgcggcatgtcccgggtgcctcgacgcagg 118991052
Query: 183 cagtgaggcgcgcggcgagcgggatgggtcgacgccgggcgccagagctgtaccgggccc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118991053 cagtgaggcgcgcggcgagcgggatgggtcgacgccgggcgccagagctgtaccgggccc 118991112
Query: 243 cgttcccgttgtacgcgcttcaggtcgagccgagcgcggggctgctcatcgcggcgggcg 302
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 118991113 cgttcccgttgtacgcgcttcaggtcgagccaagcgcggggctgctcatcgcggcgggcg 118991172
Query: 303 gaggaggtgctgccaagaccggtataaagaacggcgtg 340
||||||||||||||||||||||||||||||||||||||
Sbjct: 118991173 gaggaggtgctgccaagaccggtataaagaacggcgtg 118991210
Score = 450 bits (227), Expect = e-123
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 530 gcagcttccaaggagcaggggcctcgacagaggaaaggggctgccccagcagagaagaag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118992168 gcagcttccaaggagcaggggcctcgacagaggaaaggggctgccccagcagagaagaag 118992227
Query: 590 tctggagctgaaacccaccaggaggggttagaattcagcgtagagaatttgcaggccgtg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118992228 tctggagctgaaacccaccaggaggggttagaattcagcgtagagaatttgcaggccgtg 118992287
Query: 650 cagacagacttcagccctgacccactgcagaaagttgtacgcttcaaccatgatgctacc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118992288 cagacagacttcagccctgacccactgcagaaagttgtacgcttcaaccatgatgctacc 118992347
Query: 710 ctgcttgccactggagggacagatggctacgttcgtgtctggaaggt 756
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118992348 ctgcttgccactggagggacagatggctacgttcgtgtctggaaggt 118992394
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 340 gcactttctgcagctagagcggattcatgggcacctcagtgcctctctgctccactccca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118991788 gcactttctgcagctagagcggattcatgggcacctcagtgcctctctgctccactccca 118991847
Query: 400 tgacacggagactcgcgccaccatgaacttggcgctggctggcaacatccttgctgcagg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118991848 tgacacggagactcgcgccaccatgaacttggcgctggctggcaacatccttgctgcagg 118991907
Query: 460 gcaggatgcccgctgtcagctcttgcgcttccagacccaacagcagaagggcaaaaacaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118991908 gcaggatgcccgctgtcagctcttgcgcttccagacccaacagcagaagggcaaaaacaa 118991967
Query: 520 ggcagagaaggcag 533
||||||||||||||
Sbjct: 118991968 ggcagagaaggcag 118991981
Score = 351 bits (177), Expect = 9e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 958 caggttcgggccagttccagaccagcctgccgggctgcggctcttcacagtgcagattcc 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993057 caggttcgggccagttccagaccagcctgccgggctgcggctcttcacagtgcagattcc 118993116
Query: 1018 ccacaagcgtctgcgccagcccccaccctgctacctcacagcctgggatggctccacgtt 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993117 ccacaagcgtctgcgccagcccccaccctgctacctcacagcctgggatggctccacgtt 118993176
Query: 1078 cttaccccttcggaccaggtcctgtggccatgaagtcatctcctgcctcagtgtcag 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993177 cttaccccttcggaccaggtcctgtggccatgaagtcatctcctgcctcagtgtcag 118993233
Score = 323 bits (163), Expect = 2e-85
Identities = 166/167 (99%)
Strand = Plus / Plus
Query: 1202 ctccagcgcctgtactatgtgaaggaggcccatggcattgtggtgacggatgtggccttt 1261
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993611 ctccagcgcctctactatgtgaaggaggcccatggcattgtggtgacggatgtggccttt 118993670
Query: 1262 ctacctgagaaggggcgtggtccagagctccttgggtcccacgaaactgctctgttctct 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993671 ctacctgagaaggggcgtggtccagagctccttgggtcccacgaaactgctctgttctct 118993730
Query: 1322 gtggctgtggatagtcgttgccagctacacctgctgccctcacgacg 1368
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993731 gtggctgtggatagtcgttgccagctacacctgctgccctcacgacg 118993777
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 834 agttggttactgtgggccgggaccttaaggcctctgtgtggcagaaggatcagctggtga 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118992755 agttggttactgtgggccgggaccttaaggcctctgtgtggcagaaggatcagctggtga 118992814
Query: 894 cccagctgcactggcaagagaacggacccaccttttctaacacgccttaccgctaccagg 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118992815 cccagctgcactggcaagagaacggacccaccttttctaacacgccttaccgctaccagg 118992874
Query: 954 cctgcaggt 962
|||||||||
Sbjct: 118992875 cctgcaggt 118992883
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 753 aggtccccaccttggagaaagttttggagttccgggcccatgaaggagagattgaggacc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118992576 aggtccccaccttggagaaagttttggagttccgggcccatgaaggagagattgaggacc 118992635
Query: 813 tggctgtggggcccgacggcaag 835
|||||||||||||||||||||||
Sbjct: 118992636 tggctgtggggcccgacggcaag 118992658
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1132 cagtgaatcgggcaccttcctgggcctgggcacggtcactggctctgttgccatctacat 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118993365 cagtgaatcgggcaccttcctgggcctgggcacggtcactggctctgttgccatctacat 118993424
Query: 1192 agctttctccctccag 1207
||||||||||||||||
Sbjct: 118993425 agctttctccctccag 118993440
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,249,301
Number of extensions: 508
Number of successful extensions: 508
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 9
Length of query: 1868
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1846
Effective length of database: 2,808,408,574
Effective search space: 5184322227604
Effective search space used: 5184322227604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)