Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003099
(874 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071341.1| deoxyuridine 5'-triphosphate nucleotidohydro... 271 5e-73
Alignment gi|XP_002700490.1| PREDICTED: deoxyuridine triphosphatase-like ... 259 2e-69
>ref|NP_001071341.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
[Bos taurus].
Length = 185
Score = 271 bits (693), Expect = 5e-73
Identities = 135/149 (90%), Positives = 139/149 (93%)
Frame = +2
Query: 89 QETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKA 268
+E QV+SPSKRAR E RLRFARLSEHATAPTKGS RAAGYDLYSAYDYTV PMEK
Sbjct: 26 KEAQVVSPSKRARATEAGDMRLRFARLSEHATAPTKGSARAAGYDLYSAYDYTVPPMEKV 85
Query: 269 IVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVK 448
+VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVK
Sbjct: 86 LVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVK 145
Query: 449 KGDRIAQLICERIFYPEIEEVQVLDDTKR 535
KGDRIAQLICERIFYPEIEEVQVLDDT+R
Sbjct: 146 KGDRIAQLICERIFYPEIEEVQVLDDTER 174
>ref|XP_002700490.1| PREDICTED: deoxyuridine triphosphatase-like [Bos taurus].
Length = 164
Score = 259 bits (663), Expect = 2e-69
Identities = 130/153 (84%), Positives = 136/153 (88%)
Frame = +2
Query: 77 MPCSQETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLP 256
MPCSQE QV+SPSK A+ E RL FARLSEHATAPTKGS RA GYDLYSAYDYTV P
Sbjct: 1 MPCSQEAQVVSPSKWAQATEAGNMRLHFARLSEHATAPTKGSARAVGYDLYSAYDYTVPP 60
Query: 257 MEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK 436
MEK +VKTDIQIA+PSGCYGRVAPRSGLAAKHF DVGAGVIDEDYRGNVGVVLFN GKEK
Sbjct: 61 MEKVLVKTDIQIAVPSGCYGRVAPRSGLAAKHFKDVGAGVIDEDYRGNVGVVLFNLGKEK 120
Query: 437 FEVKKGDRIAQLICERIFYPEIEEVQVLDDTKR 535
FEVKKGD+IAQLI ERI YPEIEEVQVLDDT+R
Sbjct: 121 FEVKKGDQIAQLIRERISYPEIEEVQVLDDTER 153
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,439,228
Number of extensions: 733985
Number of successful extensions: 2706
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2699
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 190
Effective length of database: 14,339,486
Effective search space: 2724502340
Effective search space used: 2724502340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003099
(874 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851889.1| PREDICTED: similar to Deoxyuridine 5-triphospha... 268 4e-72
>ref|XP_851889.1| PREDICTED: similar to Deoxyuridine 5-triphosphate
nucleotidohydrolase, mitochondrial precursor (dUTPase)
(dUTP pyrophosphatase) [Canis familiaris].
Length = 214
Score = 268 bits (686), Expect = 4e-72
Identities = 135/151 (89%), Positives = 139/151 (92%)
Frame = +2
Query: 83 CSQETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPME 262
C T ISPSKRARPAE+ RLRF RLSEHATAPTKGS RAAGYDLYSAYDY + PME
Sbjct: 54 CRATTPAISPSKRARPAEDGM-RLRFVRLSEHATAPTKGSPRAAGYDLYSAYDYILPPME 112
Query: 263 KAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFE 442
KAIVKTDIQ+ALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFE
Sbjct: 113 KAIVKTDIQVALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFE 172
Query: 443 VKKGDRIAQLICERIFYPEIEEVQVLDDTKR 535
VKKGDRIAQLICERIFYPEIEEVQVLDDT+R
Sbjct: 173 VKKGDRIAQLICERIFYPEIEEVQVLDDTER 203
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,667,186
Number of extensions: 742972
Number of successful extensions: 2778
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2771
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 189
Effective length of database: 15,474,232
Effective search space: 2924629848
Effective search space used: 2924629848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003099
(874 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001939.1| deoxyuridine 5'-triphosphate nucleotidohydrolas... 281 5e-76
Alignment gi|NP_001020419.1| deoxyuridine 5'-triphosphate nucleotidohydro... 271 7e-73
Alignment gi|NP_001020420.1| deoxyuridine 5'-triphosphate nucleotidohydro... 248 4e-66
>ref|NP_001939.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
isoform 2 [Homo sapiens].
Length = 164
Score = 281 bits (719), Expect = 5e-76
Identities = 138/153 (90%), Positives = 144/153 (94%)
Frame = +2
Query: 77 MPCSQETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLP 256
MPCS+ET ISPSKRARPAE +LRFARLSEHATAPT+GS RAAGYDLYSAYDYT+ P
Sbjct: 1 MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60
Query: 257 MEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK 436
MEKA+VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK
Sbjct: 61 MEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK 120
Query: 437 FEVKKGDRIAQLICERIFYPEIEEVQVLDDTKR 535
FEVKKGDRIAQLICERIFYPEIEEVQ LDDT+R
Sbjct: 121 FEVKKGDRIAQLICERIFYPEIEEVQALDDTER 153
>ref|NP_001020419.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
isoform 1 precursor [Homo sapiens].
Length = 252
Score = 271 bits (692), Expect = 7e-73
Identities = 134/148 (90%), Positives = 139/148 (93%)
Frame = +2
Query: 92 ETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 271
ET ISPSKRARPAE +LRFARLSEHATAPT+GS RAAGYDLYSAYDYT+ PMEKA+
Sbjct: 94 ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV 153
Query: 272 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 451
VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK
Sbjct: 154 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 213
Query: 452 GDRIAQLICERIFYPEIEEVQVLDDTKR 535
GDRIAQLICERIFYPEIEEVQ LDDT+R
Sbjct: 214 GDRIAQLICERIFYPEIEEVQALDDTER 241
>ref|NP_001020420.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
isoform 3 [Homo sapiens].
Length = 141
Score = 248 bits (634), Expect = 4e-66
Identities = 121/129 (93%), Positives = 126/129 (97%)
Frame = +2
Query: 149 RLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAIVKTDIQIALPSGCYGRVAP 328
+LRFARLSEHATAPT+GS RAAGYDLYSAYDYT+ PMEKA+VKTDIQIALPSGCYGRVAP
Sbjct: 2 QLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAP 61
Query: 329 RSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEE 508
RSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEE
Sbjct: 62 RSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEE 121
Query: 509 VQVLDDTKR 535
VQ LDDT+R
Sbjct: 122 VQALDDTER 130
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,069,798
Number of extensions: 726537
Number of successful extensions: 2659
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2656
Number of HSP's successfully gapped: 3
Length of query: 291
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 189
Effective length of database: 14,934,836
Effective search space: 2822684004
Effective search space used: 2822684004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003099
(874 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076084.2| deoxyuridine triphosphatase isoform 2 [Mus musc... 255 4e-68
Alignment gi|NP_001153118.1| deoxyuridine triphosphatase isoform 1 [Mus m... 246 1e-65
>ref|NP_076084.2| deoxyuridine triphosphatase isoform 2 [Mus musculus].
Length = 162
Score = 255 bits (651), Expect = 4e-68
Identities = 126/153 (82%), Positives = 136/153 (88%)
Frame = +2
Query: 77 MPCSQETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLP 256
MPCS++ +S SKRAR E LRF RLSEHATAPT+GS RAAGYDL+SAYDYT+ P
Sbjct: 1 MPCSEDAAAVSASKRARA--EDGASLRFVRLSEHATAPTRGSARAAGYDLFSAYDYTISP 58
Query: 257 MEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK 436
MEKAIVKTDIQIA+PSGCYGRVAPRSGLA KHFIDVGAGVIDEDYRGNVGVVLFNFGKEK
Sbjct: 59 MEKAIVKTDIQIAVPSGCYGRVAPRSGLAVKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK 118
Query: 437 FEVKKGDRIAQLICERIFYPEIEEVQVLDDTKR 535
FEVKKGDRIAQLICERI YP++EEVQ LDDT+R
Sbjct: 119 FEVKKGDRIAQLICERISYPDLEEVQTLDDTER 151
>ref|NP_001153118.1| deoxyuridine triphosphatase isoform 1 [Mus musculus].
Length = 200
Score = 246 bits (629), Expect = 1e-65
Identities = 124/155 (80%), Positives = 133/155 (85%)
Frame = +2
Query: 71 PAMPCSQETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTV 250
PA + +S SKRAR E LRF RLSEHATAPT+GS RAAGYDL+SAYDYT+
Sbjct: 37 PAGSARADAAAVSASKRARA--EDGASLRFVRLSEHATAPTRGSARAAGYDLFSAYDYTI 94
Query: 251 LPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGK 430
PMEKAIVKTDIQIA+PSGCYGRVAPRSGLA KHFIDVGAGVIDEDYRGNVGVVLFNFGK
Sbjct: 95 SPMEKAIVKTDIQIAVPSGCYGRVAPRSGLAVKHFIDVGAGVIDEDYRGNVGVVLFNFGK 154
Query: 431 EKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTKR 535
EKFEVKKGDRIAQLICERI YP++EEVQ LDDT+R
Sbjct: 155 EKFEVKKGDRIAQLICERISYPDLEEVQTLDDTER 189
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,682,576
Number of extensions: 619821
Number of successful extensions: 2126
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2125
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 191
Effective length of database: 12,613,959
Effective search space: 2409266169
Effective search space used: 2409266169
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003099
(874 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353419.1| PREDICTED: deoxyuridine 5'-triphosphate nucl... 295 2e-80
Alignment gi|XP_003353418.1| PREDICTED: deoxyuridine 5'-triphosphate nucl... 294 5e-80
>ref|XP_003353419.1| PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 167
Score = 295 bits (756), Expect = 2e-80
Identities = 148/148 (100%), Positives = 148/148 (100%)
Frame = +2
Query: 92 ETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 271
ETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI
Sbjct: 9 ETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 68
Query: 272 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 451
VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK
Sbjct: 69 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 128
Query: 452 GDRIAQLICERIFYPEIEEVQVLDDTKR 535
GDRIAQLICERIFYPEIEEVQVLDDTKR
Sbjct: 129 GDRIAQLICERIFYPEIEEVQVLDDTKR 156
>ref|XP_003353418.1| PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 229
Score = 294 bits (752), Expect = 5e-80
Identities = 147/148 (99%), Positives = 148/148 (100%)
Frame = +2
Query: 92 ETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 271
+TQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI
Sbjct: 71 KTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 130
Query: 272 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 451
VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK
Sbjct: 131 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 190
Query: 452 GDRIAQLICERIFYPEIEEVQVLDDTKR 535
GDRIAQLICERIFYPEIEEVQVLDDTKR
Sbjct: 191 GDRIAQLICERIFYPEIEEVQVLDDTKR 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,074,600
Number of extensions: 489492
Number of successful extensions: 1779
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1776
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,904,026
Effective search space: 1718477018
Effective search space used: 1718477018
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003099
(874 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 500 e-139
gb|GL895893.2| Sus scrofa unplaced genomic scaffold ChrUScaf3777 172 2e-40
Sscrofa_Chr13 84 1e-13
>Sscrofa_Chr01
|| Length = 315321322
Score = 500 bits (252), Expect = e-139
Identities = 326/360 (90%), Gaps = 9/360 (2%)
Strand = Plus / Minus
Query: 515 gttttggatgacaccaaaaggggttcaggaggttttggttccactggaacgaattaaaat 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137481029 gttttggatgacaccaaaaggggttcaggaggttttggttccactggaacgaattaaaat 137480970
Query: 575 ttacgccaagaacagaaaatgagaaaatgtactttttcctttaaaataaaaactttgctt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137480969 ttacgccaagaacagaaaatgagaaaatgtactttttcctttaaaataaaaactttgctt 137480910
Query: 635 cnnnnnnnnnnnnnnnnnnnnnnttttgcacttctgtaaacttaatagttttggcctcaa 694
| |||||||||||||||||||||||||||||||||||||
Sbjct: 137480909 caagtgttttggtg---------ttttgcacttctgtaaacttaatagttttggcctcaa 137480859
Query: 695 aatattttgttctcttatggtcaaggaaagggtacttctgttgggatcacatagaagctt 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137480858 aatattttgttctcttatggtcaaggaaagggtacttctgttgggatcacatagaagctt 137480799
Query: 755 accttaccgagtttttctgcatttgattgttatataaatctgacctcnnnnnnnnnnaat 814
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 137480798 accttaccgagtttttctgcatttgattgttatataaatctgacctcttttttttttaat 137480739
Query: 815 taaatgcacatncattacagatccccccaaaaaaccctgtattatttaattcactatgta 874
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137480738 taaatgcacatcaattacagatccccccaaaaaaccctgtattatttaattcactatgta 137480679
Score = 456 bits (230), Expect = e-125
Identities = 230/230 (100%)
Strand = Plus / Minus
Query: 2 agaatttgtgtgcggggctcatcctgctctgtcttgttccccctgctccctcttgtgctc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137490882 agaatttgtgtgcggggctcatcctgctctgtcttgttccccctgctccctcttgtgctc 137490823
Query: 62 acgttctcccctgccatgccctgctctcaagagacacaagtcatctcccccagcaagcgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137490822 acgttctcccctgccatgccctgctctcaagagacacaagtcatctcccccagcaagcgg 137490763
Query: 122 gcccggcctgcggaggaaagccgcaagcgactccgctttgcccggctctcagagcacgcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137490762 gcccggcctgcggaggaaagccgcaagcgactccgctttgcccggctctcagagcacgcc 137490703
Query: 182 actgccccaaccaaagggtctgagcgcgccgcgggatatgacctgtatag 231
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137490702 actgccccaaccaaagggtctgagcgcgccgcgggatatgacctgtatag 137490653
Score = 188 bits (95), Expect = 3e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 229 tagtgcctacgattacacagtactgccgatggagaaagccattgtgaaaaccgacattca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137488950 tagtgcctacgattacacagtactgccgatggagaaagccattgtgaaaaccgacattca 137488891
Query: 289 gatagctcttccttctgggtgctatgggcgagtag 323
|||||||||||||||||||||||||||||||||||
Sbjct: 137488890 gatagctcttccttctgggtgctatgggcgagtag 137488856
Score = 172 bits (87), Expect = 2e-40
Identities = 162/187 (86%)
Strand = Plus / Plus
Query: 372 gtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttggcaaag 431
||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct: 129886345 gtgtcctagatgaggattatagaggggatgttggtattgtagtgtttaattttggcaaag 129886404
Query: 432 aaaagtttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggatttttt 491
||| || ||| |||||||||| || | |||| | ||| ||||||||||||| ||||| ||
Sbjct: 129886405 aaatgtctgatgtcaaaaaggatgtttgaatggtacaactcatttgtgaacagatttctt 129886464
Query: 492 acccagaaatagaggaagttcaagttttggatgacaccaaaaggggttcaggaggttttg 551
| |||||||||||||||||||||||||||||||| || |||||| |||| || ||||||
Sbjct: 129886465 atccagaaatagaggaagttcaagttttggatgatactgaaagggattcaagaagttttg 129886524
Query: 552 gttccac 558
|||||||
Sbjct: 129886525 gttccac 129886531
Score = 172 bits (87), Expect = 2e-40
Identities = 162/187 (86%)
Strand = Plus / Minus
Query: 372 gtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttggcaaag 431
||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct: 130011855 gtgtcctagatgaggattatagaggggatgttggtattgtagtgtttaattttggcaaag 130011796
Query: 432 aaaagtttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggatttttt 491
||| || ||| |||||||||| || | |||| | ||| ||||||||||||| ||||| ||
Sbjct: 130011795 aaatgtctgatgtcaaaaaggatgtttgaatggtacaactcatttgtgaacagatttctt 130011736
Query: 492 acccagaaatagaggaagttcaagttttggatgacaccaaaaggggttcaggaggttttg 551
| |||||||||||||||||||||||||||||||| || |||||| |||| || ||||||
Sbjct: 130011735 atccagaaatagaggaagttcaagttttggatgatactgaaagggattcaagaagttttg 130011676
Query: 552 gttccac 558
|||||||
Sbjct: 130011675 gttccac 130011669
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 437 tttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggattttttaccca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137482036 tttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggattttttaccca 137481977
Query: 497 gaaatagaggaagttcaagt 516
||||||||||||||||||||
Sbjct: 137481976 gaaatagaggaagttcaagt 137481957
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 367 agctggtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttgg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137482251 agctggtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttgg 137482192
Query: 427 caaagaaaagtttgaag 443
|||||||||||||||||
Sbjct: 137482191 caaagaaaagtttgaag 137482175
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 320 gtagctccacgttctggcttggctgcaaaacacttcatagatgtaggag 368
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137487230 gtagctccacgttctggcttggctgcaaaacacttcatagatgtaggag 137487182
>gb|GL895893.2| Sus scrofa unplaced genomic scaffold ChrUScaf3777
Length = 76262
Score = 172 bits (87), Expect = 2e-40
Identities = 162/187 (86%)
Strand = Plus / Minus
Query: 372 gtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttggcaaag 431
||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct: 57764 gtgtcctagatgaggattatagaggggatgttggtattgtagtgtttaattttggcaaag 57705
Query: 432 aaaagtttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggatttttt 491
||| || ||| |||||||||| || | |||| | ||| ||||||||||||| ||||| ||
Sbjct: 57704 aaatgtctgatgtcaaaaaggatgtttgaatggtacaactcatttgtgaacagatttctt 57645
Query: 492 acccagaaatagaggaagttcaagttttggatgacaccaaaaggggttcaggaggttttg 551
| |||||||||||||||||||||||||||||||| || |||||| |||| || ||||||
Sbjct: 57644 atccagaaatagaggaagttcaagttttggatgatactgaaagggattcaagaagttttg 57585
Query: 552 gttccac 558
|||||||
Sbjct: 57584 gttccac 57578
>Sscrofa_Chr13
|| Length = 218635234
Score = 83.8 bits (42), Expect = 1e-13
Identities = 156/193 (80%), Gaps = 2/193 (1%)
Strand = Plus / Minus
Query: 264 aagccattgtgaaaaccgacattcagatagctcttccttctgggtgctatgggcgagtag 323
||||||||||||||| ||| ||| || ||||||||||| |||| ||||| ||||||
Sbjct: 37605475 aagccattgtgaaaatgaacactcaaatccctcttccttctaggtgttatggaagagtag 37605416
Query: 324 ctccacgttctggcttggctgcaaaacacttcatagatgtaggagctggtgtcatagatg 383
||||| |||| ||| | ||||||||||||||| |||| | ||||||||||||||| ||
Sbjct: 37605415 ttccacattctagctagactgcaaaacacttcacagatacatgagctggtgtcataggtg 37605356
Query: 384 aagattatagaggaaatgttggtgttgtactatttaattttggcaaagaaaagtttgaag 443
|| | ||||| |||||||||| ||||||| ||| | || ||||| |||| |||||
Sbjct: 37605355 aaaa--gtagagaaaatgttggtattgtactgtttcacagtgacaaagtaaagcctgaag 37605298
Query: 444 tcaaaaagggtga 456
||||||| |||||
Sbjct: 37605297 tcaaaaaaggtga 37605285
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,068,779
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 12
Length of query: 874
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 853
Effective length of database: 2,808,413,156
Effective search space: 2395576422068
Effective search space used: 2395576422068
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)