Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003100
(798 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071341.1| deoxyuridine 5'-triphosphate nucleotidohydro... 271 6e-73
Alignment gi|XP_002700490.1| PREDICTED: deoxyuridine triphosphatase-like ... 248 4e-66
>ref|NP_001071341.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
[Bos taurus].
Length = 185
Score = 271 bits (692), Expect = 6e-73
Identities = 135/148 (91%), Positives = 138/148 (93%)
Frame = +3
Query: 234 KTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 413
+ QV+SPSKRAR E RLRFARLSEHATAPTKGS RAAGYDLYSAYDYTV PMEK +
Sbjct: 27 EAQVVSPSKRARATEAGDMRLRFARLSEHATAPTKGSARAAGYDLYSAYDYTVPPMEKVL 86
Query: 414 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 593
VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK
Sbjct: 87 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 146
Query: 594 GDRIAQLICERIFYPEIEEVQVLDDTER 677
GDRIAQLICERIFYPEIEEVQVLDDTER
Sbjct: 147 GDRIAQLICERIFYPEIEEVQVLDDTER 174
>ref|XP_002700490.1| PREDICTED: deoxyuridine triphosphatase-like [Bos taurus].
Length = 164
Score = 248 bits (633), Expect = 4e-66
Identities = 125/148 (84%), Positives = 131/148 (88%)
Frame = +3
Query: 234 KTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 413
+ QV+SPSK A+ E RL FARLSEHATAPTKGS RA GYDLYSAYDYTV PMEK +
Sbjct: 6 EAQVVSPSKWAQATEAGNMRLHFARLSEHATAPTKGSARAVGYDLYSAYDYTVPPMEKVL 65
Query: 414 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 593
VKTDIQIA+PSGCYGRVAPRSGLAAKHF DVGAGVIDEDYRGNVGVVLFN GKEKFEVKK
Sbjct: 66 VKTDIQIAVPSGCYGRVAPRSGLAAKHFKDVGAGVIDEDYRGNVGVVLFNLGKEKFEVKK 125
Query: 594 GDRIAQLICERIFYPEIEEVQVLDDTER 677
GD+IAQLI ERI YPEIEEVQVLDDTER
Sbjct: 126 GDQIAQLIRERISYPEIEEVQVLDDTER 153
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,837,368
Number of extensions: 798526
Number of successful extensions: 5066
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5019
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 166
Effective length of database: 14,372,574
Effective search space: 2385847284
Effective search space used: 2385847284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003100
(798 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851889.1| PREDICTED: similar to Deoxyuridine 5-triphospha... 293 1e-79
>ref|XP_851889.1| PREDICTED: similar to Deoxyuridine 5-triphosphate
nucleotidohydrolase, mitochondrial precursor (dUTPase)
(dUTP pyrophosphatase) [Canis familiaris].
Length = 214
Score = 293 bits (750), Expect = 1e-79
Identities = 164/218 (75%), Positives = 167/218 (76%)
Frame = +3
Query: 24 MTSLCLRLMLGYHFLPSRPRLVFNRARTTRPGAEAAGLSGPASPLDPAPPGVLQLPLSST 203
MT LC R LG S R VF AR P EAAG L PLSST
Sbjct: 1 MTPLCPRPALGSLSSTSWLRSVFKDARGAAPRGEAAG--------------PLFRPLSST 46
Query: 204 RSLSRGCRGAKTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYD 383
R SRG A T ISPSKRARPAE+ RLRF RLSEHATAPTKGS RAAGYDLYSAYD
Sbjct: 47 RRPSRGGCRATTPAISPSKRARPAEDGM-RLRFVRLSEHATAPTKGSPRAAGYDLYSAYD 105
Query: 384 YTVLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFN 563
Y + PMEKAIVKTDIQ+ALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFN
Sbjct: 106 YILPPMEKAIVKTDIQVALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFN 165
Query: 564 FGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTER 677
FGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTER
Sbjct: 166 FGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTER 203
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,004,151
Number of extensions: 810036
Number of successful extensions: 5174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5122
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 165
Effective length of database: 15,507,568
Effective search space: 2558748720
Effective search space used: 2558748720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003100
(798 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020419.1| deoxyuridine 5'-triphosphate nucleotidohydro... 315 3e-86
Alignment gi|NP_001939.1| deoxyuridine 5'-triphosphate nucleotidohydrolas... 271 6e-73
Alignment gi|NP_001020420.1| deoxyuridine 5'-triphosphate nucleotidohydro... 250 1e-66
>ref|NP_001020419.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
isoform 1 precursor [Homo sapiens].
Length = 252
Score = 315 bits (807), Expect = 3e-86
Identities = 171/241 (70%), Positives = 178/241 (73%), Gaps = 23/241 (9%)
Frame = +3
Query: 24 MTSLCLRLMLGYHFLPSRPRLVFNRARTTRPGAEAAGLSGPASPLDPAPPGVLQLPLSST 203
MT LC R L YHFL S R AR R AEAA LSGP PL A + PLSS
Sbjct: 1 MTPLCPRPALCYHFLTSLLRSAMQNARGARQRAEAAVLSGPGPPLGRAAQHGIPRPLSSA 60
Query: 204 RSLSRGCRGA-----------------------KTQVISPSKRARPAEESRKRLRFARLS 314
LS+GCRGA +T ISPSKRARPAE +LRFARLS
Sbjct: 61 GRLSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPAISPSKRARPAEVGGMQLRFARLS 120
Query: 315 EHATAPTKGSERAAGYDLYSAYDYTVLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKH 494
EHATAPT+GS RAAGYDLYSAYDYT+ PMEKA+VKTDIQIALPSGCYGRVAPRSGLAAKH
Sbjct: 121 EHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKH 180
Query: 495 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTE 674
FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQ LDDTE
Sbjct: 181 FIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTE 240
Query: 675 R 677
R
Sbjct: 241 R 241
>ref|NP_001939.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
isoform 2 [Homo sapiens].
Length = 164
Score = 271 bits (692), Expect = 6e-73
Identities = 134/148 (90%), Positives = 139/148 (93%)
Frame = +3
Query: 234 KTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAI 413
+T ISPSKRARPAE +LRFARLSEHATAPT+GS RAAGYDLYSAYDYT+ PMEKA+
Sbjct: 6 ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV 65
Query: 414 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 593
VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK
Sbjct: 66 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 125
Query: 594 GDRIAQLICERIFYPEIEEVQVLDDTER 677
GDRIAQLICERIFYPEIEEVQ LDDTER
Sbjct: 126 GDRIAQLICERIFYPEIEEVQALDDTER 153
>ref|NP_001020420.1| deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
isoform 3 [Homo sapiens].
Length = 141
Score = 250 bits (638), Expect = 1e-66
Identities = 122/129 (94%), Positives = 126/129 (97%)
Frame = +3
Query: 291 RLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAIVKTDIQIALPSGCYGRVAP 470
+LRFARLSEHATAPT+GS RAAGYDLYSAYDYT+ PMEKA+VKTDIQIALPSGCYGRVAP
Sbjct: 2 QLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAP 61
Query: 471 RSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEE 650
RSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEE
Sbjct: 62 RSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEE 121
Query: 651 VQVLDDTER 677
VQ LDDTER
Sbjct: 122 VQALDDTER 130
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,310,608
Number of extensions: 779763
Number of successful extensions: 4767
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4729
Number of HSP's successfully gapped: 3
Length of query: 266
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 165
Effective length of database: 14,967,800
Effective search space: 2469687000
Effective search space used: 2469687000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003100
(798 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153118.1| deoxyuridine triphosphatase isoform 1 [Mus m... 250 8e-67
Alignment gi|NP_076084.2| deoxyuridine triphosphatase isoform 2 [Mus musc... 246 2e-65
>ref|NP_001153118.1| deoxyuridine triphosphatase isoform 1 [Mus musculus].
Length = 200
Score = 250 bits (639), Expect = 8e-67
Identities = 133/170 (78%), Positives = 140/170 (82%), Gaps = 8/170 (4%)
Frame = +3
Query: 192 LSSTRSLS-RGCRGAKT-------QVISPSKRARPAEESRKRLRFARLSEHATAPTKGSE 347
L S RS S RG RGA +S SKRAR E LRF RLSEHATAPT+GS
Sbjct: 22 LGSARSRSCRGSRGAPAGSARADAAAVSASKRARA--EDGASLRFVRLSEHATAPTRGSA 79
Query: 348 RAAGYDLYSAYDYTVLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDE 527
RAAGYDL+SAYDYT+ PMEKAIVKTDIQIA+PSGCYGRVAPRSGLA KHFIDVGAGVIDE
Sbjct: 80 RAAGYDLFSAYDYTISPMEKAIVKTDIQIAVPSGCYGRVAPRSGLAVKHFIDVGAGVIDE 139
Query: 528 DYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTER 677
DYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERI YP++EEVQ LDDTER
Sbjct: 140 DYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERISYPDLEEVQTLDDTER 189
>ref|NP_076084.2| deoxyuridine triphosphatase isoform 2 [Mus musculus].
Length = 162
Score = 246 bits (627), Expect = 2e-65
Identities = 123/144 (85%), Positives = 130/144 (90%)
Frame = +3
Query: 246 ISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYTVLPMEKAIVKTD 425
+S SKRAR E LRF RLSEHATAPT+GS RAAGYDL+SAYDYT+ PMEKAIVKTD
Sbjct: 10 VSASKRARA--EDGASLRFVRLSEHATAPTRGSARAAGYDLFSAYDYTISPMEKAIVKTD 67
Query: 426 IQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRI 605
IQIA+PSGCYGRVAPRSGLA KHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRI
Sbjct: 68 IQIAVPSGCYGRVAPRSGLAVKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRI 127
Query: 606 AQLICERIFYPEIEEVQVLDDTER 677
AQLICERI YP++EEVQ LDDTER
Sbjct: 128 AQLICERISYPDLEEVQTLDDTER 151
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,763,306
Number of extensions: 648620
Number of successful extensions: 3626
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3600
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 167
Effective length of database: 12,643,995
Effective search space: 2111547165
Effective search space used: 2111547165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003100
(798 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353418.1| PREDICTED: deoxyuridine 5'-triphosphate nucl... 428 e-120
Alignment gi|XP_003353419.1| PREDICTED: deoxyuridine 5'-triphosphate nucl... 294 4e-80
>ref|XP_003353418.1| PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 229
Score = 428 bits (1100), Expect = e-120
Identities = 215/218 (98%), Positives = 216/218 (99%)
Frame = +3
Query: 24 MTSLCLRLMLGYHFLPSRPRLVFNRARTTRPGAEAAGLSGPASPLDPAPPGVLQLPLSST 203
MTSLCLR MLGYHFLPS PRLVFNRARTTRPGAEAAGLSGPASPLDPAPPGVLQLPLSST
Sbjct: 1 MTSLCLRPMLGYHFLPSWPRLVFNRARTTRPGAEAAGLSGPASPLDPAPPGVLQLPLSST 60
Query: 204 RSLSRGCRGAKTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYD 383
RSLSRGCRGAKTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYD
Sbjct: 61 RSLSRGCRGAKTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYD 120
Query: 384 YTVLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFN 563
YTVLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFN
Sbjct: 121 YTVLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFN 180
Query: 564 FGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTER 677
FGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDT+R
Sbjct: 181 FGKEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTKR 218
>ref|XP_003353419.1| PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 167
Score = 294 bits (752), Expect = 4e-80
Identities = 147/156 (94%), Positives = 151/156 (96%)
Frame = +3
Query: 210 LSRGCRGAKTQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYT 389
++ G +TQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYT
Sbjct: 1 MAAGGNAPETQVISPSKRARPAEESRKRLRFARLSEHATAPTKGSERAAGYDLYSAYDYT 60
Query: 390 VLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFG 569
VLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFG
Sbjct: 61 VLPMEKAIVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFG 120
Query: 570 KEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTER 677
KEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDT+R
Sbjct: 121 KEKFEVKKGDRIAQLICERIFYPEIEEVQVLDDTKR 156
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,743,465
Number of extensions: 533117
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3243
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,928,923
Effective search space: 1508987987
Effective search space used: 1508987987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003100
(798 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 448 e-123
gb|GL895893.2| Sus scrofa unplaced genomic scaffold ChrUScaf3777 180 8e-43
Sscrofa_Chr13 84 1e-13
>Sscrofa_Chr01
|| Length = 315321322
Score = 448 bits (226), Expect = e-123
Identities = 232/234 (99%)
Strand = Plus / Minus
Query: 1 ctctccgcccaaatcccaggcaaatgacttccctgtgccttcgcctaatgctcggctacc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 137491553 ctctccgcccaaatcccaggcaaatgacttccctgtgccttcgcccaatgctcggctacc 137491494
Query: 61 atttccttccgtctcggcctcgcttggtgtttaaccgcgcgcgcaccacaaggccggggg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137491493 atttccttccgtcttggcctcgcttggtgtttaaccgcgcgcgcaccacaaggccggggg 137491434
Query: 121 ctgaggcggccgggctctccgggccagcctctcccctggaccccgccccgccgggagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137491433 ctgaggcggccgggctctccgggccagcctctcccctggaccccgccccgccgggagttc 137491374
Query: 181 tgcagctcccgctgtccagcacccgcagtctcagccgaggttgccgcggcgcca 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137491373 tgcagctcccgctgtccagcacccgcagtctcagccgaggttgccgcggcgcca 137491320
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 235 agacacaagtcatctcccccagcaagcgggcccggcctgcggaggaaagccgcaagcgac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137490791 agacacaagtcatctcccccagcaagcgggcccggcctgcggaggaaagccgcaagcgac 137490732
Query: 295 tccgctttgcccggctctcagagcacgccactgccccaaccaaagggtctgagcgcgccg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137490731 tccgctttgcccggctctcagagcacgccactgccccaaccaaagggtctgagcgcgccg 137490672
Query: 355 cgggatatgacctgtatag 373
|||||||||||||||||||
Sbjct: 137490671 cgggatatgacctgtatag 137490653
Score = 232 bits (117), Expect = 2e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 657 gttttggatgacaccgaaaggggttcaggaggttttggttccactggaacgaattaaaat 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137481029 gttttggatgacaccaaaaggggttcaggaggttttggttccactggaacgaattaaaat 137480970
Query: 717 ttacgccaagaacagaaaatgagaaaatgtactttttcctttaaaataaaaactttgctt 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137480969 ttacgccaagaacagaaaatgagaaaatgtactttttcctttaaaataaaaactttgctt 137480910
Query: 777 c 777
|
Sbjct: 137480909 c 137480909
Score = 188 bits (95), Expect = 3e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 371 tagtgcctacgattacacagtactgccgatggagaaagccattgtgaaaaccgacattca 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137488950 tagtgcctacgattacacagtactgccgatggagaaagccattgtgaaaaccgacattca 137488891
Query: 431 gatagctcttccttctgggtgctatgggcgagtag 465
|||||||||||||||||||||||||||||||||||
Sbjct: 137488890 gatagctcttccttctgggtgctatgggcgagtag 137488856
Score = 180 bits (91), Expect = 8e-43
Identities = 163/187 (87%)
Strand = Plus / Plus
Query: 514 gtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttggcaaag 573
||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct: 129886345 gtgtcctagatgaggattatagaggggatgttggtattgtagtgtttaattttggcaaag 129886404
Query: 574 aaaagtttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggatttttt 633
||| || ||| |||||||||| || | |||| | ||| ||||||||||||| ||||| ||
Sbjct: 129886405 aaatgtctgatgtcaaaaaggatgtttgaatggtacaactcatttgtgaacagatttctt 129886464
Query: 634 acccagaaatagaggaagttcaagttttggatgacaccgaaaggggttcaggaggttttg 693
| |||||||||||||||||||||||||||||||| || ||||||| |||| || ||||||
Sbjct: 129886465 atccagaaatagaggaagttcaagttttggatgatactgaaagggattcaagaagttttg 129886524
Query: 694 gttccac 700
|||||||
Sbjct: 129886525 gttccac 129886531
Score = 180 bits (91), Expect = 8e-43
Identities = 163/187 (87%)
Strand = Plus / Minus
Query: 514 gtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttggcaaag 573
||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct: 130011855 gtgtcctagatgaggattatagaggggatgttggtattgtagtgtttaattttggcaaag 130011796
Query: 574 aaaagtttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggatttttt 633
||| || ||| |||||||||| || | |||| | ||| ||||||||||||| ||||| ||
Sbjct: 130011795 aaatgtctgatgtcaaaaaggatgtttgaatggtacaactcatttgtgaacagatttctt 130011736
Query: 634 acccagaaatagaggaagttcaagttttggatgacaccgaaaggggttcaggaggttttg 693
| |||||||||||||||||||||||||||||||| || ||||||| |||| || ||||||
Sbjct: 130011735 atccagaaatagaggaagttcaagttttggatgatactgaaagggattcaagaagttttg 130011676
Query: 694 gttccac 700
|||||||
Sbjct: 130011675 gttccac 130011669
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 579 tttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggattttttaccca 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137482036 tttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggattttttaccca 137481977
Query: 639 gaaatagaggaagttcaagt 658
||||||||||||||||||||
Sbjct: 137481976 gaaatagaggaagttcaagt 137481957
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 509 agctggtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137482251 agctggtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttgg 137482192
Query: 569 caaagaaaagtttgaag 585
|||||||||||||||||
Sbjct: 137482191 caaagaaaagtttgaag 137482175
Score = 97.6 bits (49), Expect = 9e-18
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 462 gtagctccacgttctggcttggctgcaaaacacttcatagatgtaggag 510
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137487230 gtagctccacgttctggcttggctgcaaaacacttcatagatgtaggag 137487182
>gb|GL895893.2| Sus scrofa unplaced genomic scaffold ChrUScaf3777
Length = 76262
Score = 180 bits (91), Expect = 8e-43
Identities = 163/187 (87%)
Strand = Plus / Minus
Query: 514 gtgtcatagatgaagattatagaggaaatgttggtgttgtactatttaattttggcaaag 573
||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct: 57764 gtgtcctagatgaggattatagaggggatgttggtattgtagtgtttaattttggcaaag 57705
Query: 574 aaaagtttgaagtcaaaaagggtgatcgaatcgcacagctcatttgtgaacggatttttt 633
||| || ||| |||||||||| || | |||| | ||| ||||||||||||| ||||| ||
Sbjct: 57704 aaatgtctgatgtcaaaaaggatgtttgaatggtacaactcatttgtgaacagatttctt 57645
Query: 634 acccagaaatagaggaagttcaagttttggatgacaccgaaaggggttcaggaggttttg 693
| |||||||||||||||||||||||||||||||| || ||||||| |||| || ||||||
Sbjct: 57644 atccagaaatagaggaagttcaagttttggatgatactgaaagggattcaagaagttttg 57585
Query: 694 gttccac 700
|||||||
Sbjct: 57584 gttccac 57578
>Sscrofa_Chr13
|| Length = 218635234
Score = 83.8 bits (42), Expect = 1e-13
Identities = 156/193 (80%), Gaps = 2/193 (1%)
Strand = Plus / Minus
Query: 406 aagccattgtgaaaaccgacattcagatagctcttccttctgggtgctatgggcgagtag 465
||||||||||||||| ||| ||| || ||||||||||| |||| ||||| ||||||
Sbjct: 37605475 aagccattgtgaaaatgaacactcaaatccctcttccttctaggtgttatggaagagtag 37605416
Query: 466 ctccacgttctggcttggctgcaaaacacttcatagatgtaggagctggtgtcatagatg 525
||||| |||| ||| | ||||||||||||||| |||| | ||||||||||||||| ||
Sbjct: 37605415 ttccacattctagctagactgcaaaacacttcacagatacatgagctggtgtcataggtg 37605356
Query: 526 aagattatagaggaaatgttggtgttgtactatttaattttggcaaagaaaagtttgaag 585
|| | ||||| |||||||||| ||||||| ||| | || ||||| |||| |||||
Sbjct: 37605355 aaaa--gtagagaaaatgttggtattgtactgtttcacagtgacaaagtaaagcctgaag 37605298
Query: 586 tcaaaaagggtga 598
||||||| |||||
Sbjct: 37605297 tcaaaaaaggtga 37605285
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,841,359
Number of extensions: 899
Number of successful extensions: 899
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 11
Length of query: 798
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 777
Effective length of database: 2,808,413,156
Effective search space: 2182137022212
Effective search space used: 2182137022212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)