Animal-Genome cDNA 20110601C-003102


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003102
         (1052 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039668.1| suppressor of G2 allele of SKP1 homolog [Bos...   503   e-142
Alignment   gi|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus].      52   7e-07
Alignment   gi|NP_001033119.1| small glutamine-rich tetratricopeptide repea...    50   3e-06
Alignment   gi|NP_001179720.1| small glutamine-rich tetratricopeptide repea...    50   4e-06
Alignment   gi|XP_002696339.1| PREDICTED: small glutamine-rich tetratricope...    50   4e-06
Alignment   gi|NP_001192905.1| dnaJ homolog subfamily C member 7 [Bos tauru...    49   6e-06
Alignment   gi|NP_001192789.1| tetratricopeptide repeat protein 13 [Bos tau...    49   6e-06
Alignment   gi|XP_002698832.1| PREDICTED: tetratricopeptide repeat domain 1...    49   6e-06
Alignment   gi|XP_002698831.1| PREDICTED: tetratricopeptide repeat domain 1...    49   6e-06
Alignment   gi|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C...    49   6e-06

>ref|NP_001039668.1| suppressor of G2 allele of SKP1 homolog [Bos taurus].
          Length = 338

 Score =  503 bits (1294), Expect = e-142
 Identities = 251/278 (90%), Positives = 260/278 (93%), Gaps = 4/278 (1%)
 Frame = +2

Query: 182  RFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSL 361
            R FRSFSDALIE+DPQAALEEL+KALEQKPDDA YYCQRAYCHILLGNY DAVADAKKSL
Sbjct: 14   RLFRSFSDALIEQDPQAALEELTKALEQKPDDAPYYCQRAYCHILLGNYSDAVADAKKSL 73

Query: 362  ELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSE 541
            ELNPN STA+LRKGICEYHEKNYAAALETFTEGQKL+SAD D   WIKRC+EAQNGSQ E
Sbjct: 74   ELNPNSSTALLRKGICEYHEKNYAAALETFTEGQKLNSADADLTAWIKRCQEAQNGSQPE 133

Query: 542  VSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYNL 721
            VSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDY+L
Sbjct: 134  VSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYSL 193

Query: 722  KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPSS 901
            KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPK FIADVKNLYPSS
Sbjct: 194  KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKPFIADVKNLYPSS 253

Query: 902  SHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
            SHYTRNWDKLVGEIKEEEKNEK+ G  +    F+QI S
Sbjct: 254  SHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYS 291



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
            K++++  KLEGDAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 268  KEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNK 303


>ref|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus].
          Length = 543

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 32/117 (27%), Positives = 54/117 (46%)
 Frame = +2

Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
           D   A++  ++A+++ P DA+ Y  RA C+  L  +  A+ D ++ ++L P       RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434

Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
                  K+Y  A++ + +   LDS           C+EA +G Q  V A    H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDS----------NCKEAADGYQRCVMAQYNRHDS 481


>ref|NP_001033119.1| small glutamine-rich tetratricopeptide repeat-containing protein
           alpha [Bos taurus].
          Length = 313

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 27/85 (31%), Positives = 47/85 (55%)
 Frame = +2

Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
           E+ +AA+    KA+E  P +A Y+C RA  +  LGNY  AV D ++++ ++P+ S A  R
Sbjct: 105 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGR 164

Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
            G+       +  A+  + +  +LD
Sbjct: 165 MGLALSSLNKHTEAVAYYRKALELD 189


>ref|NP_001179720.1| small glutamine-rich tetratricopeptide repeat-containing protein
           beta [Bos taurus].
          Length = 304

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 28/101 (27%), Positives = 53/101 (52%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           EE+  AA++  ++A+E   ++A YYC RA     LG+Y DA+ D +K++ ++   S A  
Sbjct: 98  EENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157

Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
           R G+       +  A+ ++ +   LD  +  +   +K  E+
Sbjct: 158 RMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLKIAEQ 198


>ref|XP_002696339.1| PREDICTED: small glutamine-rich tetratricopeptide repeat
           (TPR)-containing, beta-like [Bos taurus].
          Length = 304

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 28/101 (27%), Positives = 53/101 (52%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           EE+  AA++  ++A+E   ++A YYC RA     LG+Y DA+ D +K++ ++   S A  
Sbjct: 98  EENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157

Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
           R G+       +  A+ ++ +   LD  +  +   +K  E+
Sbjct: 158 RMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLKIAEQ 198


>ref|NP_001192905.1| dnaJ homolog subfamily C member 7 [Bos taurus].
          Length = 494

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+       L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDTFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


>ref|NP_001192789.1| tetratricopeptide repeat protein 13 [Bos taurus].
          Length = 858

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
           A+ +L+KA++ +P  A+ Y  R   + +  +Y  A  D ++SLELN N   AML KG+  
Sbjct: 233 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 291

Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
           +H      A+E+F E   QK+D  D
Sbjct: 292 FHRGLLKEAIESFKEALKQKVDFID 316


>ref|XP_002698832.1| PREDICTED: tetratricopeptide repeat domain 13 isoform 2 [Bos
           taurus].
          Length = 805

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
           A+ +L+KA++ +P  A+ Y  R   + +  +Y  A  D ++SLELN N   AML KG+  
Sbjct: 180 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 238

Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
           +H      A+E+F E   QK+D  D
Sbjct: 239 FHRGLLKEAIESFKEALKQKVDFID 263


>ref|XP_002698831.1| PREDICTED: tetratricopeptide repeat domain 13 isoform 1 [Bos
           taurus].
          Length = 858

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
           A+ +L+KA++ +P  A+ Y  R   + +  +Y  A  D ++SLELN N   AML KG+  
Sbjct: 233 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 291

Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
           +H      A+E+F E   QK+D  D
Sbjct: 292 FHRGLLKEAIESFKEALKQKVDFID 316


>ref|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 7 [Bos
           taurus].
          Length = 403

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 27/86 (31%), Positives = 45/86 (52%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+       L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDTFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,873,537
Number of extensions: 730186
Number of successful extensions: 3548
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 14
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003102
         (1052 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851986.1| PREDICTED: similar to suppressor of G2 allele o...   497   e-141
Alignment   gi|XP_535139.2| PREDICTED: similar to suppressor of G2 allele o...   268   2e-83
Alignment   gi|XP_535258.1| PREDICTED: similar to small glutamine-rich tetr...    52   7e-07
Alignment   gi|XP_853176.1| PREDICTED: similar to Tetratricopeptide repeat ...    51   2e-06
Alignment   gi|XP_854960.1| PREDICTED: similar to Stress-induced-phosphopro...    50   3e-06
Alignment   gi|XP_542185.2| PREDICTED: similar to small glutamine-rich tetr...    50   4e-06
Alignment   gi|XP_537639.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub...    50   5e-06
Alignment   gi|XP_860857.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub...    50   5e-06
Alignment   gi|XP_860799.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub...    50   5e-06
Alignment   gi|XP_860765.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub...    50   5e-06

>ref|XP_851986.1| PREDICTED: similar to suppressor of G2 allele of SKP1 [Canis
            familiaris].
          Length = 493

 Score =  497 bits (1280), Expect = e-141
 Identities = 251/292 (85%), Positives = 263/292 (90%), Gaps = 4/292 (1%)
 Frame = +2

Query: 140  VGMXXXXXXXXXXQRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILL 319
            +GM           +F RSFSDAL+EEDP+AALEEL+KALEQKPDDAQYYCQRAYCHILL
Sbjct: 155  LGMAAAAAGPATASKFSRSFSDALMEEDPRAALEELTKALEQKPDDAQYYCQRAYCHILL 214

Query: 320  GNYHDAVADAKKSLELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVW 499
            GNY DAVADAKKSLELNPN S AMLRKGICEYHEKNYAAALETF EGQKLDSAD DF VW
Sbjct: 215  GNYCDAVADAKKSLELNPNNSIAMLRKGICEYHEKNYAAALETFIEGQKLDSADPDFTVW 274

Query: 500  IKRCEEAQNGSQSEVSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKEL 679
            IK+C+EAQNGSQSEVS SQRTHQSKIKYDWYQTESQVIITLMIKNVQKN+VNVEFSEKEL
Sbjct: 275  IKKCQEAQNGSQSEVSDSQRTHQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKEL 334

Query: 680  SALVKLPSGDDYNLKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNP 859
            SALVKLPSG+DYNLKLRLLHPIIPEQSTFKVLSTKIEIKMKK EAVRWEKLEGQGDVP P
Sbjct: 335  SALVKLPSGEDYNLKLRLLHPIIPEQSTFKVLSTKIEIKMKKTEAVRWEKLEGQGDVPKP 394

Query: 860  KQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
            KQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEK+ G  +    F+QI S
Sbjct: 395  KQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYS 446



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
            K++++  KLEGDAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 423  KEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNK 458


>ref|XP_535139.2| PREDICTED: similar to suppressor of G2 allele of SKP1 [Canis
           familiaris].
          Length = 223

 Score =  268 bits (686), Expect(2) = 2e-83
 Identities = 132/137 (96%), Positives = 135/137 (98%)
 Frame = +2

Query: 560 THQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYNLKLRLLH 739
           THQSKIKYDWYQTESQVIITLMIKNVQKN+VNVEFSEKELSALVKLPSG+DYNLKLRLLH
Sbjct: 25  THQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKELSALVKLPSGEDYNLKLRLLH 84

Query: 740 PIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPSSSHYTRN 919
           PIIPEQSTFKVLSTKIEIKMKK EAVRWEKLEGQGDVP PKQFIADVKNLYPSSSHYTRN
Sbjct: 85  PIIPEQSTFKVLSTKIEIKMKKTEAVRWEKLEGQGDVPKPKQFIADVKNLYPSSSHYTRN 144

Query: 920 WDKLVGEIKEEEKNEKV 970
           WDKLVGEIKEEEKNEK+
Sbjct: 145 WDKLVGEIKEEEKNEKL 161



 Score = 60.1 bits (144), Expect(2) = 2e-83
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
            K++++  KLE DAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 153  KEEEKNEKLEVDAALNKLFQQIYSDGSDEVKRAMNK 188


>ref|XP_535258.1| PREDICTED: similar to small glutamine-rich tetratricopeptide repeat
           (TPR)-containing, beta [Canis familiaris].
          Length = 304

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           EE+  AA++  ++A+E  P++A YYC RA     LG+Y DA+ D +K++ ++   S A  
Sbjct: 98  EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157

Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
           R G+       +  A+ ++ +   LD  +  +   +K  E+
Sbjct: 158 RMGLALTAINKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198


>ref|XP_853176.1| PREDICTED: similar to Tetratricopeptide repeat protein 4 (TPR
           repeat protein 4) [Canis familiaris].
          Length = 358

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
 Frame = +2

Query: 200 SDALIEEDPQAALEELSKALEQKPDD----AQYYCQRAYCHILLGNYHDAVADAKKSLEL 367
           +D   E++ + A+   ++ L++K  D    A  Y  RA     LGN+  A+ D K + +L
Sbjct: 57  NDYFKEKEYKKAVISYTEGLKKKCSDPDMNAVLYTNRAAAQYYLGNFRSALNDVKAARKL 116

Query: 368 NPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVS 547
            P    A++R  +C    KN+A A+    EG ++D+ +   +    + ++ +   Q ++ 
Sbjct: 117 KPCHLKAIVRGALCHLELKNFAEAVNWCDEGLQIDAREKKLLEMRAKADKLKRTEQRDI- 175

Query: 548 ASQRTHQSKIKYDWYQTESQVII 616
                 ++K+K    Q E++ ++
Sbjct: 176 -----RKAKLKEKKEQNENEALL 193


>ref|XP_854960.1| PREDICTED: similar to Stress-induced-phosphoprotein 1 (STI1)
           (Hsc70/Hsp90-organizing protein) (Hop)
           (Transformation-sensitive protein IEF SSP 3521) [Canis
           familiaris].
          Length = 543

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 31/117 (26%), Positives = 54/117 (46%)
 Frame = +2

Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
           D   A++  ++A+++ P DA+ Y  RA C+  L  +  A+ D ++ ++L P       RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPAFIKGYTRK 434

Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
                  K+Y  A++ + +   LDS           C+EA +G Q  + A    H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDS----------NCKEAADGYQRCMMAQYNRHDS 481


>ref|XP_542185.2| PREDICTED: similar to small glutamine-rich tetratricopeptide [Canis
           familiaris].
          Length = 313

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 27/85 (31%), Positives = 47/85 (55%)
 Frame = +2

Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
           E+ +AA+    KA+E  P +A Y+C RA  +  LGNY  AV D ++++ ++P+ S A  R
Sbjct: 105 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYTGAVQDCERAICIDPSYSKAYGR 164

Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
            G+       +  A+  + +  +LD
Sbjct: 165 MGLALSSLNKHTEAVAYYKKALELD 189


>ref|XP_537639.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
           isoform 2 [Canis familiaris].
          Length = 494

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+ +     L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


>ref|XP_860857.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
           isoform 11 [Canis familiaris].
          Length = 485

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+ +     L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


>ref|XP_860799.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
           isoform 9 [Canis familiaris].
          Length = 347

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+ +     L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


>ref|XP_860765.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
           isoform 8 [Canis familiaris].
          Length = 383

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+ +     L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,480,022
Number of extensions: 756362
Number of successful extensions: 3829
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3803
Number of HSP's successfully gapped: 18
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003102
         (1052 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006695.1| suppressor of G2 allele of SKP1 homolog isoform...   486   e-137
Alignment   gi|NP_001124384.1| suppressor of G2 allele of SKP1 homolog isof...   468   e-132
Alignment   gi|NP_061945.1| small glutamine-rich tetratricopeptide repeat-c...    52   7e-07
Alignment   gi|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens].       52   1e-06
Alignment   gi|NP_003306.3| dnaJ homolog subfamily C member 7 isoform 1 [Ho...    50   5e-06
Alignment   gi|NP_001116307.2| tetratricopeptide repeat protein 13 isoform ...    49   6e-06
Alignment   gi|NP_078801.3| tetratricopeptide repeat protein 13 isoform a [...    49   6e-06
Alignment   gi|NP_055227.1| calcyclin-binding protein isoform 1 [Homo sapie...    41   7e-06
Alignment   gi|NP_001007215.1| calcyclin-binding protein isoform 2 [Homo sa...    41   7e-06
Alignment   gi|NP_003012.1| small glutamine-rich tetratricopeptide repeat-c...    49   8e-06

>ref|NP_006695.1| suppressor of G2 allele of SKP1 homolog isoform SGT1A [Homo sapiens].
          Length = 333

 Score =  486 bits (1251), Expect = e-137
 Identities = 245/279 (87%), Positives = 258/279 (92%), Gaps = 4/279 (1%)
 Frame = +2

Query: 179  QRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKS 358
            QRFF+SFSDALI+EDPQAALEEL+KALEQKPDDAQYYCQRAYCHILLGNY  AVADAKKS
Sbjct: 12   QRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKS 71

Query: 359  LELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQS 538
            LELNPN STAMLRKGICEYHEKNYAAALETFTEGQKLDSAD +F VWIKRC+EAQNGS+S
Sbjct: 72   LELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADANFSVWIKRCQEAQNGSES 131

Query: 539  EVSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYN 718
            EV     THQSKIKYDWYQTESQV+ITLMIKNVQKNDVNVEFSEKELSALVKLPSG+DYN
Sbjct: 132  EVW----THQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYN 187

Query: 719  LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPS 898
            LKL LLHPIIPEQSTFKVLSTKIEIK+KKPEAVRWEKLEGQGDVP PKQF+ADVKNLYPS
Sbjct: 188  LKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPS 247

Query: 899  SSHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
            SS YTRNWDKLVGEIKEEEKNEK+ G  +    F+QI S
Sbjct: 248  SSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYS 286



 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 29/36 (80%), Positives = 34/36 (94%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
            K++++  KLEGDAALN+LFQQIYSDGSDEVKRAMNK
Sbjct: 263  KEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNK 298


>ref|NP_001124384.1| suppressor of G2 allele of SKP1 homolog isoform SGT1B [Homo sapiens].
          Length = 365

 Score =  468 bits (1204), Expect = e-132
 Identities = 244/311 (78%), Positives = 257/311 (82%), Gaps = 36/311 (11%)
 Frame = +2

Query: 179  QRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKS 358
            QRFF+SFSDALI+EDPQAALEEL+KALEQKPDDAQYYCQRAYCHILLGNY  AVADAKKS
Sbjct: 12   QRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKS 71

Query: 359  LELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLD---------------------- 472
            LELNPN STAMLRKGICEYHEKNYAAALETFTEGQKLD                      
Sbjct: 72   LELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDIETGFHRVGQAGLQLLTSSDPP 131

Query: 473  ----------SADTDFIVWIKRCEEAQNGSQSEVSASQRTHQSKIKYDWYQTESQVIITL 622
                       AD +F VWIKRC+EAQNGS+SEV     THQSKIKYDWYQTESQV+ITL
Sbjct: 132  ALDSQSAGITGADANFSVWIKRCQEAQNGSESEVW----THQSKIKYDWYQTESQVVITL 187

Query: 623  MIKNVQKNDVNVEFSEKELSALVKLPSGDDYNLKLRLLHPIIPEQSTFKVLSTKIEIKMK 802
            MIKNVQKNDVNVEFSEKELSALVKLPSG+DYNLKL LLHPIIPEQSTFKVLSTKIEIK+K
Sbjct: 188  MIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLK 247

Query: 803  KPEAVRWEKLEGQGDVPNPKQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKVGGRC 982
            KPEAVRWEKLEGQGDVP PKQF+ADVKNLYPSSS YTRNWDKLVGEIKEEEKNEK+ G  
Sbjct: 248  KPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKNEKLEGDA 307

Query: 983  S----FKQIIS 1003
            +    F+QI S
Sbjct: 308  ALNRLFQQIYS 318



 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 29/36 (80%), Positives = 34/36 (94%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
            K++++  KLEGDAALN+LFQQIYSDGSDEVKRAMNK
Sbjct: 295  KEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNK 330


>ref|NP_061945.1| small glutamine-rich tetratricopeptide repeat-containing protein
           beta [Homo sapiens].
          Length = 304

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           EE+  AA++  ++A+E  P++A YYC RA     LG+Y DA+ D +K++ ++   S A  
Sbjct: 98  EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157

Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
           R G+       +  A+ ++ +   LD  +  +   +K  E+
Sbjct: 158 RMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198


>ref|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens].
          Length = 543

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 31/117 (26%), Positives = 55/117 (47%)
 Frame = +2

Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
           D   A++  ++A+++ P DA+ Y  RA C+  L  +  A+ D ++ ++L P       RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434

Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
                  K+Y  A++ + +   LDS+          C+EA +G Q  + A    H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDSS----------CKEAADGYQRCMMAQYNRHDS 481


>ref|NP_003306.3| dnaJ homolog subfamily C member 7 isoform 1 [Homo sapiens].
          Length = 494

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+ +     L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


>ref|NP_001116307.2| tetratricopeptide repeat protein 13 isoform b [Homo sapiens].
          Length = 806

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
           A+ +L+KA++ +P  A+ Y  R   + +  +Y  A  D ++SLELN N   AML KG+  
Sbjct: 182 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 240

Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
           +H      A+E+F E   QK+D  D
Sbjct: 241 FHRGLLKEAIESFKEALKQKVDFID 265


>ref|NP_078801.3| tetratricopeptide repeat protein 13 isoform a [Homo sapiens].
          Length = 860

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
           A+ +L+KA++ +P  A+ Y  R   + +  +Y  A  D ++SLELN N   AML KG+  
Sbjct: 235 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 293

Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
           +H      A+E+F E   QK+D  D
Sbjct: 294 FHRGLLKEAIESFKEALKQKVDFID 318


>ref|NP_055227.1| calcyclin-binding protein isoform 1 [Homo sapiens].
          Length = 228

 Score = 40.8 bits (94), Expect(2) = 7e-06
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
 Frame = +2

Query: 503 KRCEEAQNGSQSEVSASQRT-HQSKIK-YDWYQTES--QVIITLM-IKNVQKNDVNVEFS 667
           K+ E   N   + V A   T +  KI  Y W Q++   ++ ITL  +  V   +V V F+
Sbjct: 50  KKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFT 109

Query: 668 EKELSALVKLPSGDDYNLKL-RLLHPIIPEQSTFKV-LSTKIEIKMKKPEAVRWEKL 832
           E+    LVK  +G  Y++ +  LL PI  E S+ KV   T + +  KK E  RW+ L
Sbjct: 110 ERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL 166



 Score = 27.7 bits (60), Expect(2) = 7e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAA--LNKLFQQIYSDGSDEVKRAMNK 1052
            +K+K     E D +  L  + ++IY DG D++KR +NK
Sbjct: 175  EKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINK 212


>ref|NP_001007215.1| calcyclin-binding protein isoform 2 [Homo sapiens].
          Length = 185

 Score = 40.8 bits (94), Expect(2) = 7e-06
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
 Frame = +2

Query: 503 KRCEEAQNGSQSEVSASQRT-HQSKIK-YDWYQTES--QVIITLM-IKNVQKNDVNVEFS 667
           K+ E   N   + V A   T +  KI  Y W Q++   ++ ITL  +  V   +V V F+
Sbjct: 7   KKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFT 66

Query: 668 EKELSALVKLPSGDDYNLKL-RLLHPIIPEQSTFKV-LSTKIEIKMKKPEAVRWEKL 832
           E+    LVK  +G  Y++ +  LL PI  E S+ KV   T + +  KK E  RW+ L
Sbjct: 67  ERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL 123



 Score = 27.7 bits (60), Expect(2) = 7e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAA--LNKLFQQIYSDGSDEVKRAMNK 1052
            +K+K     E D +  L  + ++IY DG D++KR +NK
Sbjct: 132  EKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINK 169


>ref|NP_003012.1| small glutamine-rich tetratricopeptide repeat-containing protein
           alpha [Homo sapiens].
          Length = 313

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 27/85 (31%), Positives = 46/85 (54%)
 Frame = +2

Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
           E+ +AA+    KA+E  P +A Y+C RA  +  LGNY  AV D ++++ ++P  S A  R
Sbjct: 105 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 164

Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
            G+       +  A+  + +  +LD
Sbjct: 165 MGLALSSLNKHVEAVAYYKKALELD 189


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,959,897
Number of extensions: 755913
Number of successful extensions: 3966
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3926
Number of HSP's successfully gapped: 14
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003102
         (1052 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080750.1| suppressor of G2 allele of SKP1 homolog [Mus mu...   463   e-130
Alignment   gi|NP_033916.1| calcyclin-binding protein [Mus musculus].             43   1e-06
Alignment   gi|NP_078775.1| small glutamine-rich tetratricopeptide repeat-c...    52   1e-06
Alignment   gi|NP_058017.1| stress-induced-phosphoprotein 1 [Mus musculus].       51   1e-06
Alignment   gi|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus].     50   2e-06
Alignment   gi|NP_659087.1| small glutamine-rich tetratricopeptide repeat-c...    50   2e-06

>ref|NP_080750.1| suppressor of G2 allele of SKP1 homolog [Mus musculus].
          Length = 336

 Score =  463 bits (1191), Expect = e-130
 Identities = 230/279 (82%), Positives = 250/279 (89%), Gaps = 4/279 (1%)
 Frame = +2

Query: 179  QRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKS 358
            QR F+SFSDALI+ DPQAALEEL+KALEQ PDDAQYYCQRAYCHILLG Y D +AD KKS
Sbjct: 12   QRLFQSFSDALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKKS 71

Query: 359  LELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQS 538
            LELNPN  TA+LRKGICEYHEK+YA+ALETF EGQKLDS DT+F  WIKRC+E QNGS+S
Sbjct: 72   LELNPNNCTALLRKGICEYHEKDYASALETFAEGQKLDSTDTNFDTWIKRCQEIQNGSES 131

Query: 539  EVSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYN 718
            EVSASQRT QSKIKYDWYQTES VIITLMIK+VQKNDV V FSE+ELSALVK+P+G+DY+
Sbjct: 132  EVSASQRT-QSKIKYDWYQTESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYS 190

Query: 719  LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPS 898
            LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGD P PKQF ADVKN+YPS
Sbjct: 191  LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDEPTPKQFTADVKNMYPS 250

Query: 899  SSHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
            SSHYTRNWDKLVGEIKEEEKNEK+ G  +    F+QI S
Sbjct: 251  SSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYS 289



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
            K++++  KLEGDAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 266  KEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNK 301


>ref|NP_033916.1| calcyclin-binding protein [Mus musculus].
          Length = 229

 Score = 42.7 bits (99), Expect(2) = 1e-06
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
 Frame = +2

Query: 581 YDWYQTES--QVIITLM-IKNVQKNDVNVEFSEKELSALVKLPSGDDYNLKL-RLLHPII 748
           Y W Q++   ++ ITL  +  V   +V V F+E+    LVK  +G +Y++ +  LL PI 
Sbjct: 79  YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKNYSMIVNNLLKPIS 138

Query: 749 PEQSTFKV-LSTKIEIKMKKPEAVRWEKL 832
            E S+ KV   T I +  KK E  RW+ L
Sbjct: 139 VESSSKKVKTDTVIILCRKKAENTRWDYL 167



 Score = 28.5 bits (62), Expect(2) = 1e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 945  KKKKRMRKLEGDAA--LNKLFQQIYSDGSDEVKRAMNK 1052
            +K+K     E D +  L  + ++IY DG D++KR +NK
Sbjct: 176  EKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINK 213


>ref|NP_078775.1| small glutamine-rich tetratricopeptide repeat-containing protein
           alpha [Mus musculus].
          Length = 315

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/85 (32%), Positives = 47/85 (55%)
 Frame = +2

Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
           E+ +AA+    KA+E  P +A Y+C RA  +  LGNY  AV D ++++ ++P  S A  R
Sbjct: 106 ENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGR 165

Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
            G+       +A A+  + +  +LD
Sbjct: 166 MGLALSSLNKHAEAVAYYKKALELD 190


>ref|NP_058017.1| stress-induced-phosphoprotein 1 [Mus musculus].
          Length = 543

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 31/117 (26%), Positives = 55/117 (47%)
 Frame = +2

Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
           D   A++  ++A+++ P DA+ Y  RA C+  L  +  A+ D ++ ++L P       RK
Sbjct: 375 DYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434

Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
                  K+Y  A++ + +   LDS+          C+EA +G Q  + A    H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDSS----------CKEAADGYQRCMMAQYNRHDS 481


>ref|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus].
          Length = 494

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P++A YY  RA   ++LG + +A+ DA++S+ L+ +     L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


>ref|NP_659087.1| small glutamine-rich tetratricopeptide repeat-containing protein
           beta [Mus musculus].
          Length = 304

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 28/101 (27%), Positives = 53/101 (52%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           EE+  AA++  ++A+E  P++A YYC RA     L +Y DA+ D +K++ ++   S A  
Sbjct: 98  EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYG 157

Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
           R G+       +  A+ ++ +   LD  +  +   +K  E+
Sbjct: 158 RMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,022,784
Number of extensions: 644110
Number of successful extensions: 3097
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3062
Number of HSP's successfully gapped: 8
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003102
         (1052 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003134059.1| PREDICTED: small glutamine-rich tetratricope...    53   3e-07
Alignment   gi|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-l...    51   9e-07
Alignment   gi|XP_003123075.1| PREDICTED: small glutamine-rich tetratricope...    51   1e-06
Alignment   gi|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7...    50   3e-06
Alignment   gi|XP_001926679.2| PREDICTED: tetratricopeptide repeat protein ...    49   4e-06
Alignment   gi|XP_001926697.1| PREDICTED: tetratricopeptide repeat protein ...    49   4e-06
Alignment   gi|XP_003128021.1| PREDICTED: tetratricopeptide repeat protein ...    49   5e-06

>ref|XP_003134059.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing
           protein beta-like [Sus scrofa].
          Length = 304

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           EE+  AA++  ++A+E  P++A YYC RA     LG+Y DA+ D +K++ ++   S A  
Sbjct: 98  EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157

Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
           R G+       +  A+ ++ +   LD  +  +   +K  E+
Sbjct: 158 RMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198


>ref|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-like [Sus scrofa].
          Length = 543

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 31/117 (26%), Positives = 54/117 (46%)
 Frame = +2

Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
           D   A++  ++A+++ P DA+ Y  RA C+  L  +  A+ D ++ ++L P       RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434

Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
                  K+Y  A++ + +   LD+           C+EA +G Q  V A    H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDA----------NCKEAADGYQRCVMAQYNRHDS 481


>ref|XP_003123075.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing
           protein alpha-like [Sus scrofa].
          Length = 313

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 27/85 (31%), Positives = 47/85 (55%)
 Frame = +2

Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
           E+ +AA+    KA+E  P +A Y+C RA  +  LGNY  AV D ++++ ++P+ S A  R
Sbjct: 105 ENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGR 164

Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
            G+       +  A+  + +  +LD
Sbjct: 165 MGLALSSLNKHTEAVAYYRKALELD 189


>ref|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 1 [Sus
           scrofa].
          Length = 494

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = +2

Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
           ++D   A    +KA++  P +A YY  RA   ++LG + +A+ DA++S+ L+ +     L
Sbjct: 41  KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHL 100

Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
           R+G C     N  AA  +F    +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126


>ref|XP_001926679.2| PREDICTED: tetratricopeptide repeat protein 13 isoform 1 [Sus
           scrofa].
          Length = 804

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
           A+ +L+KA++ +P  A+ Y  R   + +  +Y  A  D ++SLELN N   AML KG+  
Sbjct: 180 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 238

Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
           +H      A+E+F E   QK+D  D
Sbjct: 239 FHRGLLKEAIESFKEALKQKVDFID 263


>ref|XP_001926697.1| PREDICTED: tetratricopeptide repeat protein 13 isoform 2 [Sus
           scrofa].
          Length = 858

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
           A+ +L+KA++ +P  A+ Y  R   + +  +Y  A  D ++SLELN N   AML KG+  
Sbjct: 233 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 291

Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
           +H      A+E+F E   QK+D  D
Sbjct: 292 FHRGLLKEAIESFKEALKQKVDFID 316


>ref|XP_003128021.1| PREDICTED: tetratricopeptide repeat protein 4 [Sus scrofa].
          Length = 388

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
 Frame = +2

Query: 200 SDALIEEDPQAALEELSKALEQK---PD-DAQYYCQRAYCHILLGNYHDAVADAKKSLEL 367
           +D   E+D + A+   ++ L++K   PD +A  Y  RA     LGN+  A+ D   + +L
Sbjct: 87  NDYFKEKDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKL 146

Query: 368 NPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVS 547
            P    A++R  +C    KNY  A+    EG ++D+ +   +    + ++ +   Q ++ 
Sbjct: 147 KPCHLKAIVRGALCHLELKNYGEAVTWCDEGLQIDATEKKLLEMRAKADKLKRTEQRDI- 205

Query: 548 ASQRTHQSKIKYDWYQTESQVII 616
                 ++K+K    Q +++ ++
Sbjct: 206 -----RKAKLKEKKEQNQNEALL 223


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,072,590
Number of extensions: 462243
Number of successful extensions: 2212
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2193
Number of HSP's successfully gapped: 7
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003102
         (1052 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr11                                                         339   2e-90

>Sscrofa_Chr11 
||          Length = 87690581

 Score =  339 bits (171), Expect = 2e-90
 Identities = 178/179 (99%), Gaps = 1/179 (0%)
 Strand = Plus / Plus

                                                                            
Query: 874      agatgtaaaaaacctatatccatcatcatctcattacacaagaaattgggataaattggt 933
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26430023 agatgtaaaaaacctatatccatcatcatctcattacacaagaaattgggataaattggt 26430082

                                                                            
Query: 934      tggtgagatcaaagaagaagaaaagaatgagaaagttggagggagatgcagctttaaaca 993
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26430083 tggtgagatcaaagaagaagaaaagaatgag-aagttggagggagatgcagctttaaaca 26430141

                                                                           
Query: 994      aattatttcagcagatctattcagatggttctgatgaagtgaaacgtgccatgaacaaa 1052
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26430142 aattatttcagcagatctattcagatggttctgatgaagtgaaacgtgccatgaacaaa 26430200



 Score =  335 bits (169), Expect = 3e-89
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                            
Query: 17       gtggctgctcgttggctccttaggacggaagctcggttggtgtttctccagaagtttccc 76
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394054 gtggctgctcgttggctccttaggacggaagctcggttggtgtttctccagaagtttccc 26394113

                                                                            
Query: 77       ccttgggcggcggcggactggtaacctcggtaggagcggctccagcagcggtaacagtga 136
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394114 ccttgggcggcggcggactggtaacctcggtaggagcggctccagcagcggtaacagtga 26394173

                                                                 
Query: 137      ccagtagggatggcggcggctgcagcgggacctgcaacggcccaaaggt 185
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394174 ccagtagggatggcggcggctgcagcgggacctgcaacggcccaaaggt 26394222



 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                            
Query: 675      agttgtctgctttggtgaaacttccttctggagatgattacaatttgaagctgagacttc 734
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26412629 agttgtctgctttggtgaaacttccttctggagatgattacaatttgaagctgagacttc 26412688

                                                                  
Query: 735      ttcatcccataataccagaacagagcacatttaaagtactttcaacaaag 784
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26412689 ttcatcccataataccagaacagagcacatttaaagtactttcaacaaag 26412738



 Score =  192 bits (97), Expect = 3e-46
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                            
Query: 580      gtatgactggtatcaaacagaatctcaagtaatcattacacttatgatcaagaatgttca 639
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26411733 gtatgactggtatcaaacagaatctcaagtaatcattacacttatgatcaagaatgttca 26411792

                                                     
Query: 640      gaagaatgatgtaaatgtggaattttcagaaaaagag 676
                |||||||||||||||||||||||||||||||||||||
Sbjct: 26411793 gaagaatgatgtaaatgtggaattttcagaaaaagag 26411829



 Score =  184 bits (93), Expect = 7e-44
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                            
Query: 240      aggagctgtctaaggctttggagcagaaaccagatgatgcacagtattactgtcagagag 299
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26400868 aggagctgtctaaggctttggagcagaaaccagatgatgcacagtattactgtcagagag 26400927

                                                 
Query: 300      cttattgtcacattcttcttgggaattaccatg 332
                |||||||||||||||||||||||||||||||||
Sbjct: 26400928 cttattgtcacattcttcttgggaattaccatg 26400960



 Score =  184 bits (93), Expect = 7e-44
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                            
Query: 783      agatcgaaattaaaatgaaaaagccagaagctgtgagatgggaaaagctggagggacaag 842
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26425713 agatcgaaattaaaatgaaaaagccagaagctgtgagatgggaaaagctggagggacaag 26425772

                                                 
Query: 843      gagatgtgcctaaccccaaacagttcatagcag 875
                |||||||||||||||||||||||||||||||||
Sbjct: 26425773 gagatgtgcctaaccccaaacagttcatagcag 26425805



 Score =  143 bits (72), Expect = 2e-31
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                            
Query: 332      gatgctgttgctgatgcaaagaaatctcttgaacttaatccaaatggttccactgcgatg 391
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26402169 gatgctgttgctgatgcaaagaaatctcttgaacttaatccaaatggttccactgcgatg 26402228

                            
Query: 392      ctgagaaagggg 403
                ||||||||||||
Sbjct: 26402229 ctgagaaagggg 26402240



 Score =  121 bits (61), Expect = 8e-25
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                            
Query: 182      aggtttttccggagcttctcagatgctctgatcgaagaggacccccaggcggcgttagag 241
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394316 aggtttttccggagcttctcagatgctctgatcgaagaggacccccaggcggcgttagag 26394375

                 
Query: 242      g 242
                |
Sbjct: 26394376 g 26394376



 Score =  109 bits (55), Expect = 3e-21
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                       
Query: 474      gtgcagatactgatttcattgtctggattaaaaggtgtgaagaagctcagaatgg 528
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26407847 gtgcagatactgatttcattgtctggattaaaaggtgtgaagaagctcagaatgg 26407901



 Score =  105 bits (53), Expect = 5e-20
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 402      ggatatgcgaataccatgnnnnnnnctatgctgctgctctagaaacttttacagaaggac 461
                ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 26405051 ggatatgcgaataccatgaaaaaaactatgctgctgctctagaaacttttacagaaggac 26405110

                              
Query: 462      agaaactagatagt 475
                ||||||||||||||
Sbjct: 26405111 agaaactagatagt 26405124



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                       
Query: 544      gtctgcatcccagaggactcatcagtcaaaaatcaagta 582
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 26409861 gtctgcatcccagaggactcatcagtcaaaaatcaagta 26409899


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,919,033
Number of extensions: 325
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 11
Length of query: 1052
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1031
Effective length of database: 2,808,413,156
Effective search space: 2895473963836
Effective search space used: 2895473963836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)