Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003106
(1508 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696239.1| PREDICTED: G protein-coupled receptor, famil... 695 0.0
Alignment gi|XP_878236.3| PREDICTED: G protein-coupled receptor, family C... 695 0.0
Alignment gi|NP_001069209.1| G-protein coupled receptor family C group 5 ... 245 7e-65
Alignment gi|NP_001029687.1| retinoic acid-induced protein 3 [Bos taurus]. 189 6e-48
Alignment gi|NP_001098882.1| G-protein coupled receptor family C group 5 ... 162 7e-40
>ref|XP_002696239.1| PREDICTED: G protein-coupled receptor, family C, group 5, member C
[Bos taurus].
Length = 442
Score = 695 bits (1794), Expect = 0.0
Identities = 346/442 (78%), Positives = 361/442 (81%)
Frame = +3
Query: 84 MAVHKAXXXXXXXXXXXFSAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAG 263
MA+H+ A Q APPGCSPDLNPLYYNLCDRSEAWGI+LEAVAGAG
Sbjct: 1 MAIHRTVLMCLGLPLFLLPGARAQEQAPPGCSPDLNPLYYNLCDRSEAWGIILEAVAGAG 60
Query: 264 IITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRR 443
++T FVLTIILVASLPFVQDTKKRS ACVVKP FSTCASRR
Sbjct: 61 VVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPSFSTCASRR 120
Query: 444 FLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLV 623
FLFGVLFAICFSCLVAHV AL+FLVRKNHGPRGWV F VALLLSLVEVIINTEWLIITLV
Sbjct: 121 FLFGVLFAICFSCLVAHVLALHFLVRKNHGPRGWVIFLVALLLSLVEVIINTEWLIITLV 180
Query: 624 RXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWR 803
R N DFVMALIYVMLLLLCAF+GAW ALCGRFKRWR
Sbjct: 181 RGAGTEGDALGNGSAGWVAVSPCAIANADFVMALIYVMLLLLCAFSGAWSALCGRFKRWR 240
Query: 804 KHGVFVLLTTATSIAIWVAWIVMYTYGNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPE 983
KHGVF+LLTT SIAIWV WIVMYTYGNRQH+SP+WDDPTLAIALA NAW FVLFYVIPE
Sbjct: 241 KHGVFILLTTTASIAIWVVWIVMYTYGNRQHNSPTWDDPTLAIALATNAWAFVLFYVIPE 300
Query: 984 VSQVTKASPEQSYQGDLYPTRGVGYEAILKEQKGQSMFVENKAFSMDEPASGKRPVSPYS 1163
VSQVT++SPEQSYQGDLYPTRGVGYE ILKEQKGQSMFVENKAFSMDEPAS KRPVSPYS
Sbjct: 301 VSQVTRSSPEQSYQGDLYPTRGVGYETILKEQKGQSMFVENKAFSMDEPASAKRPVSPYS 360
Query: 1164 GYNGQLLTSVYQPTEMTVMHKAPSEGAYDVILPRATANSQVMGSANSTLRAEDIYAAQSL 1343
GYNGQLLTS+YQPTEMT+MHKAPS+GAYDVILPRATANSQV GSANSTLRAEDIYAAQ
Sbjct: 361 GYNGQLLTSMYQPTEMTLMHKAPSDGAYDVILPRATANSQVTGSANSTLRAEDIYAAQGR 420
Query: 1344 QEATLPKEGKNSQVFRNPYVWD 1409
QEATLPKEGKNSQVFRNPYVWD
Sbjct: 421 QEATLPKEGKNSQVFRNPYVWD 442
>ref|XP_878236.3| PREDICTED: G protein-coupled receptor, family C, group 5, member C
isoform 2 [Bos taurus].
Length = 442
Score = 695 bits (1794), Expect = 0.0
Identities = 346/442 (78%), Positives = 361/442 (81%)
Frame = +3
Query: 84 MAVHKAXXXXXXXXXXXFSAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAG 263
MA+H+ A Q APPGCSPDLNPLYYNLCDRSEAWGI+LEAVAGAG
Sbjct: 1 MAIHRTVLMCLGLPLFLLPGARAQEQAPPGCSPDLNPLYYNLCDRSEAWGIILEAVAGAG 60
Query: 264 IITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRR 443
++T FVLTIILVASLPFVQDTKKRS ACVVKP FSTCASRR
Sbjct: 61 VVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPSFSTCASRR 120
Query: 444 FLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLV 623
FLFGVLFAICFSCLVAHV AL+FLVRKNHGPRGWV F VALLLSLVEVIINTEWLIITLV
Sbjct: 121 FLFGVLFAICFSCLVAHVLALHFLVRKNHGPRGWVIFLVALLLSLVEVIINTEWLIITLV 180
Query: 624 RXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWR 803
R N DFVMALIYVMLLLLCAF+GAW ALCGRFKRWR
Sbjct: 181 RGAGTEGDALGNGSAGWVAVSPCAIANADFVMALIYVMLLLLCAFSGAWSALCGRFKRWR 240
Query: 804 KHGVFVLLTTATSIAIWVAWIVMYTYGNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPE 983
KHGVF+LLTT SIAIWV WIVMYTYGNRQH+SP+WDDPTLAIALA NAW FVLFYVIPE
Sbjct: 241 KHGVFILLTTTASIAIWVVWIVMYTYGNRQHNSPTWDDPTLAIALATNAWAFVLFYVIPE 300
Query: 984 VSQVTKASPEQSYQGDLYPTRGVGYEAILKEQKGQSMFVENKAFSMDEPASGKRPVSPYS 1163
VSQVT++SPEQSYQGDLYPTRGVGYE ILKEQKGQSMFVENKAFSMDEPAS KRPVSPYS
Sbjct: 301 VSQVTRSSPEQSYQGDLYPTRGVGYETILKEQKGQSMFVENKAFSMDEPASAKRPVSPYS 360
Query: 1164 GYNGQLLTSVYQPTEMTVMHKAPSEGAYDVILPRATANSQVMGSANSTLRAEDIYAAQSL 1343
GYNGQLLTS+YQPTEMT+MHKAPS+GAYDVILPRATANSQV GSANSTLRAEDIYAAQ
Sbjct: 361 GYNGQLLTSMYQPTEMTLMHKAPSDGAYDVILPRATANSQVTGSANSTLRAEDIYAAQGR 420
Query: 1344 QEATLPKEGKNSQVFRNPYVWD 1409
QEATLPKEGKNSQVFRNPYVWD
Sbjct: 421 QEATLPKEGKNSQVFRNPYVWD 442
>ref|NP_001069209.1| G-protein coupled receptor family C group 5 member B [Bos taurus].
Length = 387
Score = 245 bits (626), Expect = 7e-65
Identities = 138/368 (37%), Positives = 201/368 (54%), Gaps = 7/368 (1%)
Frame = +3
Query: 138 SAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFV 317
S A + GC DL P Y +LCD WGIV+EAVAGAG + +L +IL+ LPF+
Sbjct: 17 SGASENASTSRGCGLDLLPQYVSLCDLDTIWGIVVEAVAGAGALITLLLMLILLVRLPFI 76
Query: 318 QDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHV 497
+D +K+ A +++ D + C+ RRFL+GVLFA+CFSCL++
Sbjct: 77 KDKEKKDPVGLHFLFLLGTLGLFGLTFAFIIREDETICSVRRFLWGVLFALCFSCLLSQA 136
Query: 498 FALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXX 677
+ + LVR P GW +AL L LV+VII EWL++T++R
Sbjct: 137 WRVRRLVRHGKSPSGWQLVGMALCLMLVQVIIAIEWLVLTVLRDAKPACAYEP------- 189
Query: 678 XXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWV 857
MDF MALIY M+LL+ A+ +LCG+FK+W+++GV +L+T S+ IWV
Sbjct: 190 ---------MDFAMALIYDMVLLVATLALAFFSLCGKFKKWKQNGVCILVTAFLSVLIWV 240
Query: 858 AWIVMYTYGNRQ-HHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
AW+ MY +GN + +W DPTLAI L A+ WVFV+F+ IPE+ +P+++
Sbjct: 241 AWMTMYLFGNAELRQGDAWGDPTLAITLVASGWVFVIFHAIPEIHCTILPAPQENTPNYF 300
Query: 1035 YPTRGVGYEAILKEQ-KGQSMFVENKAFSMDEPASGKRPVSPYSGYNGQ-----LLTSVY 1196
++ E +E + ++ENKAFSMDE + R +G G ++VY
Sbjct: 301 DTSQPRMRETAFEEDVQLPRTYMENKAFSMDEHNAALRTAGFRNGSLGNRPSAPFRSNVY 360
Query: 1197 QPTEMTVM 1220
QPTEM V+
Sbjct: 361 QPTEMAVV 368
>ref|NP_001029687.1| retinoic acid-induced protein 3 [Bos taurus].
Length = 357
Score = 189 bits (480), Expect = 6e-48
Identities = 127/363 (34%), Positives = 169/363 (46%), Gaps = 24/363 (6%)
Frame = +3
Query: 162 APPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSX 341
AP GC DL+ YY LCD+ AWGIVLEA+AG G + + I L+ + VQD+ KR
Sbjct: 5 APAGCRSDLDSRYYRLCDKKAAWGIVLEALAGVGAVASVAFMITLLVLICKVQDSNKRKL 64
Query: 342 XXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVR 521
A ++ D T +R FLFGVLFA+CFSCL+ H F L LVR
Sbjct: 65 LPTQFLFLLGVLGIFGLTFAFIITLDGGTGPTRFFLFGVLFALCFSCLLVHAFNLTKLVR 124
Query: 522 KNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXX 701
V +AL SLV+ II E++++T+ R
Sbjct: 125 GRQPLSMLVMLGLALGFSLVQDIIAIEYVVLTMNR-----------TNVNIFSELSPPRR 173
Query: 702 NMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTY 881
N DFVM LIYV+ L+ F A + G F W++HG + LTT SIAIWVAWI +
Sbjct: 174 NEDFVMLLIYVLFLMALTFLTASFSFQGSFTAWKRHGAHIYLTTILSIAIWVAWITLLLV 233
Query: 882 GNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTK-------------ASPEQSY 1022
SP WDD L+ AL AN WVF+L Y+ PE +T+ P+
Sbjct: 234 PTL---SPQWDDTILSSALVANGWVFLLAYIAPEFHLLTRQQNPMDYPVEDAFCQPQFMK 290
Query: 1023 QGDLYPTRGVGYEAILK--EQKGQSMFVE-NKAFSMDEPASGK--------RPVSPYSGY 1169
Q R E I++ E+ G +++ + F + S K VSPYS Y
Sbjct: 291 QSYGVVNRAYSQEGIIQGTEETGSTLYAPYSTHFQLQNRDSAKDFSIPRVQTRVSPYSDY 350
Query: 1170 NGQ 1178
G+
Sbjct: 351 EGR 353
>ref|NP_001098882.1| G-protein coupled receptor family C group 5 member D [Bos taurus].
Length = 300
Score = 162 bits (410), Expect = 7e-40
Identities = 93/265 (35%), Positives = 132/265 (49%), Gaps = 2/265 (0%)
Frame = +3
Query: 198 YYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXX 377
YY LCD AWGIVLE++A GI+ +L + + + VQD +
Sbjct: 12 YYFLCDTEGAWGIVLESLAAVGIVVTVMLLLAFLFLMRRVQDCAHWNVLPTQFLFLLGVL 71
Query: 378 XXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFT 557
A +++ + T R FLFGVLFA+CFSCL+AH L LVR W T
Sbjct: 72 GLFGLAFAFIIQLNQQTAPIRYFLFGVLFALCFSCLLAHASNLVKLVR-GRASFSWTTIL 130
Query: 558 -VALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYV 734
+A+ +SL++ II E++ + + R N+DFV+ L+YV
Sbjct: 131 CIAIGVSLLQTIIAIEYVTLIMTRGGMFVHMTPYQL-------------NVDFVVLLVYV 177
Query: 735 MLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQ-HHSPSW 911
+ L+ F + CG + W++HG + +T SI IWV WI M GN Q P W
Sbjct: 178 LFLMALTFFVSKTTFCGPCENWKQHGRLIFVTVLVSIIIWVVWISMLMRGNTQLQRQPQW 237
Query: 912 DDPTLAIALAANAWVFVLFYVIPEV 986
DDP + IAL NAWVF+L Y++PE+
Sbjct: 238 DDPVICIALVTNAWVFLLLYIVPEL 262
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,631,628
Number of extensions: 1439935
Number of successful extensions: 7994
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7943
Number of HSP's successfully gapped: 5
Length of query: 502
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 396
Effective length of database: 14,174,046
Effective search space: 5612922216
Effective search space used: 5612922216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003106
(1508 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540407.2| PREDICTED: similar to G protein-coupled recepto... 717 0.0
Alignment gi|XP_536950.2| PREDICTED: similar to G-protein coupled recepto... 244 2e-64
Alignment gi|XP_543807.2| PREDICTED: similar to G protein-coupled recepto... 184 1e-46
Alignment gi|XP_543806.2| PREDICTED: similar to G-protein coupled recepto... 158 1e-38
>ref|XP_540407.2| PREDICTED: similar to G protein-coupled receptor family C, group 5,
member C isoform a [Canis familiaris].
Length = 571
Score = 717 bits (1851), Expect = 0.0
Identities = 364/471 (77%), Positives = 381/471 (80%), Gaps = 6/471 (1%)
Frame = +3
Query: 15 PKPESATRPQPG------GTQLEAGLGARMAVHKAXXXXXXXXXXXFSAAHGQSHAPPGC 176
P P A P+ G GTQLE GLGARMA+ KA FS A Q+H PPGC
Sbjct: 102 PLPAPAPAPRLGLEVAVPGTQLEPGLGARMAIPKALLTCLGLPLFLFSGAQAQNHVPPGC 161
Query: 177 SPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXX 356
SPDLNPLYYNLCDRS AWGI+LEAVAGAG++T FVLTIILVASLPFVQDTKKRS
Sbjct: 162 SPDLNPLYYNLCDRSGAWGIILEAVAGAGVVTTFVLTIILVASLPFVQDTKKRSVLGTQV 221
Query: 357 XXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGP 536
ACVVKP+FSTCASRRFLFGVLFAICFSCLVAHVFALNFL RKNHGP
Sbjct: 222 FFLLGTLGLFCLVFACVVKPNFSTCASRRFLFGVLFAICFSCLVAHVFALNFLARKNHGP 281
Query: 537 RGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFV 716
RGWV FTVALLL+LVEVIINTEWLIITLVR NMDFV
Sbjct: 282 RGWVIFTVALLLTLVEVIINTEWLIITLVRGGGEGDPLGNGSATWVTASPCAIA-NMDFV 340
Query: 717 MALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQH 896
MALIYVMLLLLCAFTGAWP +CGRFKRWRKHG FVLLTTATSIAIWV WIVMYTYGNRQ
Sbjct: 341 MALIYVMLLLLCAFTGAWPVVCGRFKRWRKHGAFVLLTTATSIAIWVVWIVMYTYGNRQR 400
Query: 897 HSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYEAILKE 1076
+SP+WDDPTLAIALAANAW FVLFYVIPEVSQVTKASPEQSYQGD+YPTRGVGYE ILKE
Sbjct: 401 NSPTWDDPTLAIALAANAWAFVLFYVIPEVSQVTKASPEQSYQGDMYPTRGVGYETILKE 460
Query: 1077 QKGQSMFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMTVMHKAPSEGAYDVI 1256
QKGQSMFVENKAFSMDEPAS KRPVSPYSGYNGQLLTSVYQPTEM +MHK PSEGAYDVI
Sbjct: 461 QKGQSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMALMHKGPSEGAYDVI 520
Query: 1257 LPRATANSQVMGSANSTLRAEDIYAAQSLQEATLPKEGKNSQVFRNPYVWD 1409
LPRATANSQVMGSANSTLRAED+YAAQS Q AT P++GK+SQVFRNPYVWD
Sbjct: 521 LPRATANSQVMGSANSTLRAEDMYAAQSHQAATPPRDGKSSQVFRNPYVWD 571
>ref|XP_536950.2| PREDICTED: similar to G-protein coupled receptor family C group 5
member B precursor (Retinoic acid induced gene 2 protein)
(RAIG-2) (A-69G12.1) [Canis familiaris].
Length = 387
Score = 244 bits (623), Expect = 2e-64
Identities = 139/368 (37%), Positives = 199/368 (54%), Gaps = 7/368 (1%)
Frame = +3
Query: 138 SAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFV 317
S A + GC DL P Y +LCD WGIV+EAVAGAG + +L +IL+ LPF+
Sbjct: 17 SGASENASTSRGCGLDLLPQYVSLCDLDTIWGIVVEAVAGAGALITLLLMLILLVRLPFI 76
Query: 318 QDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHV 497
+D +K+ A +++ D + C+ RRFL+GVLFA+CFSCL++
Sbjct: 77 KDKEKKDPVGLHFLFLLGTLGLFGLTFAFIIREDETICSVRRFLWGVLFALCFSCLLSQA 136
Query: 498 FALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXX 677
+ + LVR P GW VAL L LV+VII EWL++T++R
Sbjct: 137 WRVRRLVRHGKSPSGWQLVGVALCLMLVQVIIAIEWLVLTVLRDAKPACAYEP------- 189
Query: 678 XXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWV 857
MDFVMALIY M+LL+ A LCG+FK+W+++G +L+T S+ IWV
Sbjct: 190 ---------MDFVMALIYDMVLLVATLGLALFTLCGKFKKWKQNGACILVTAFLSVLIWV 240
Query: 858 AWIVMYTYGNRQ-HHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
AW+ MY +GN + +W DPTLAI L A+ WVFV+F+ IPE+ +P+++
Sbjct: 241 AWMTMYLFGNAELRQGDAWGDPTLAITLVASGWVFVIFHAIPEIHCTILPAPQENTPNYF 300
Query: 1035 YPTRGVGYEAILKEQ-KGQSMFVENKAFSMDEPASGKRPVSPYSGYNGQ-----LLTSVY 1196
++ E +E + ++ENKAFSMDE + R +G G ++VY
Sbjct: 301 DTSQPRMRETAFEEDVQLPRTYMENKAFSMDEHNAALRTAGFRNGSLGNRPSAPFRSNVY 360
Query: 1197 QPTEMTVM 1220
QPTEM V+
Sbjct: 361 QPTEMAVV 368
>ref|XP_543807.2| PREDICTED: similar to G protein-coupled receptor, family C, group 5,
member A [Canis familiaris].
Length = 357
Score = 184 bits (468), Expect = 1e-46
Identities = 119/340 (35%), Positives = 162/340 (47%), Gaps = 6/340 (1%)
Frame = +3
Query: 162 APPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSX 341
+P GC +L+ Y+ LCD ++ WGIVLEAVA G +T+ L+ + VQD+ +R
Sbjct: 5 SPSGCRSNLDARYHRLCDTTKIWGIVLEAVAAVGAVTSMAFMFALLILICKVQDSNRRKV 64
Query: 342 XXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVR 521
A +++ D ST +R FLFGVLF++CFSCL+AH F L LV
Sbjct: 65 LPTQFLFLLGVLGIFGLTFAFIIQLDGSTGPTRFFLFGVLFSLCFSCLLAHAFNLTKLVH 124
Query: 522 KNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXX 701
V ++A+ LSLV+ II E++I+T+ R
Sbjct: 125 GRKPLSLMVMLSLAVGLSLVQDIIAAEYIILTMNR-----------TNVAIFSELSAPRR 173
Query: 702 NMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTY 881
N DFVM LIYV+ L+ F + CG F W++HG + LT SI IWV WI +
Sbjct: 174 NEDFVMLLIYVLSLMALTFLMSCFIFCGSFIGWKRHGTHIFLTMLLSIGIWVTWITLLLI 233
Query: 882 GNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYE 1061
P WDD L+ AL AN WVF+L Y PE +TK Y + +
Sbjct: 234 ST---FGPEWDDTVLSSALVANGWVFLLAYAAPEFQLLTKQRNPMDYPVE---------D 281
Query: 1062 AILKEQ-KGQSMFVENKAFSMDEPASGKRPVS-----PYS 1163
K Q QS VEN+A+S +E G +S PYS
Sbjct: 282 TFCKPQLMRQSYGVENRAYSQEEITQGLEELSGTLYAPYS 321
>ref|XP_543806.2| PREDICTED: similar to G-protein coupled receptor family C group 5
member D [Canis familiaris].
Length = 445
Score = 158 bits (400), Expect = 1e-38
Identities = 105/339 (30%), Positives = 153/339 (45%), Gaps = 2/339 (0%)
Frame = +3
Query: 198 YYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXX 377
YY +CD AW IVLE++A GI+ +L + + L VQD +
Sbjct: 96 YYFVCDNEGAWSIVLESLAIIGIVVTIILLLAYLFLLRRVQDCSLWNTLPTQFLFLLGVL 155
Query: 378 XXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFT 557
A + + + T R FLFGVLFA+CFSCL+AH L LVR
Sbjct: 156 GLFSLAFAFIAQFNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTILC 215
Query: 558 VALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYVM 737
+A+ +SL++VII E++ + + R N+DFV+ L+YV+
Sbjct: 216 IAIGVSLLQVIIAIEYVTLMMTRGMMFMHMTPCQL-------------NVDFVVLLVYVL 262
Query: 738 LLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQ-HHSPSWD 914
L+ F + CG + W++HG + +T SI IWV WI M GN Q P WD
Sbjct: 263 FLMALTFFISKATFCGPCENWKQHGRLIFVTVLISIIIWVVWISMLLRGNPQLQRQPQWD 322
Query: 915 DPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQ-SYQGDLYPTRGVGYEAILKEQKGQS 1091
DP + IAL NAWVF+L Y+IPE+ + ++S + G+ P Y+ S
Sbjct: 323 DPVICIALVTNAWVFLLLYIIPELCILYRSSRQNCPLPGNACP--APAYQC--------S 372
Query: 1092 MFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTE 1208
VEN+ S + G + Y + PT+
Sbjct: 373 FRVENQELSRARDSDGAEEDVALTSYGTPIQLQTVDPTQ 411
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,784,283
Number of extensions: 1484122
Number of successful extensions: 8375
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8297
Number of HSP's successfully gapped: 4
Length of query: 502
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 395
Effective length of database: 15,307,552
Effective search space: 6046483040
Effective search space used: 6046483040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003106
(1508 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071319.2| G-protein coupled receptor family C group 5 mem... 711 0.0
Alignment gi|NP_061123.3| G-protein coupled receptor family C group 5 mem... 704 0.0
Alignment gi|NP_057319.1| G-protein coupled receptor family C group 5 mem... 244 2e-64
Alignment gi|NP_003970.1| retinoic acid-induced protein 3 [Homo sapiens]. 181 1e-45
Alignment gi|NP_061124.1| G-protein coupled receptor family C group 5 mem... 160 2e-39
>ref|NP_071319.2| G-protein coupled receptor family C group 5 member C isoform a [Homo
sapiens].
Length = 486
Score = 711 bits (1836), Expect = 0.0
Identities = 360/468 (76%), Positives = 377/468 (80%), Gaps = 3/468 (0%)
Frame = +3
Query: 15 PKPESATR---PQPGGTQLEAGLGARMAVHKAXXXXXXXXXXXFSAAHGQSHAPPGCSPD 185
P P A + QPGGTQ E GLGARMA+HKA F A Q H PPGCS
Sbjct: 20 PSPSPAGKYESAQPGGTQPEPGLGARMAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQG 79
Query: 186 LNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXX 365
LNPLYYNLCDRS AWGIVLEAVAGAGI+T FVLTIILVASLPFVQDTKKRS
Sbjct: 80 LNPLYYNLCDRSGAWGIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFL 139
Query: 366 XXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGW 545
ACVVKPDFSTCASRRFLFGVLFAICFSCL AHVFALNFL RKNHGPRGW
Sbjct: 140 LGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGW 199
Query: 546 VTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMAL 725
V FTVALLL+LVEVIINTEWLIITLVR NMDFVMAL
Sbjct: 200 VIFTVALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIA-NMDFVMAL 258
Query: 726 IYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQHHSP 905
IYVMLLLL AF GAWPALCGR+KRWRKHGVFVLLTTATS+AIWV WIVMYTYGN+QH+SP
Sbjct: 259 IYVMLLLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSP 318
Query: 906 SWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYEAILKEQKG 1085
+WDDPTLAIALAANAW FVLFYVIPEVSQVTK+SPEQSYQGD+YPTRGVGYE ILKEQKG
Sbjct: 319 TWDDPTLAIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQKG 378
Query: 1086 QSMFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMTVMHKAPSEGAYDVILPR 1265
QSMFVENKAFSMDEP + KRPVSPYSGYNGQLLTSVYQPTEM +MHK PSEGAYD+ILPR
Sbjct: 379 QSMFVENKAFSMDEPVAAKRPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPR 438
Query: 1266 ATANSQVMGSANSTLRAEDIYAAQSLQEATLPKEGKNSQVFRNPYVWD 1409
ATANSQVMGSANSTLRAED+Y+AQS Q AT PK+GKNSQVFRNPYVWD
Sbjct: 439 ATANSQVMGSANSTLRAEDMYSAQSHQAATPPKDGKNSQVFRNPYVWD 486
>ref|NP_061123.3| G-protein coupled receptor family C group 5 member C isoform b [Homo
sapiens].
Length = 453
Score = 704 bits (1816), Expect = 0.0
Identities = 354/453 (78%), Positives = 370/453 (81%)
Frame = +3
Query: 51 GTQLEAGLGARMAVHKAXXXXXXXXXXXFSAAHGQSHAPPGCSPDLNPLYYNLCDRSEAW 230
GTQ E GLGARMA+HKA F A Q H PPGCS LNPLYYNLCDRS AW
Sbjct: 2 GTQPEPGLGARMAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAW 61
Query: 231 GIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXXXXXXXXXACVV 410
GIVLEAVAGAGI+T FVLTIILVASLPFVQDTKKRS ACVV
Sbjct: 62 GIVLEAVAGAGIVTTFVLTIILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVV 121
Query: 411 KPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFTVALLLSLVEVI 590
KPDFSTCASRRFLFGVLFAICFSCL AHVFALNFL RKNHGPRGWV FTVALLL+LVEVI
Sbjct: 122 KPDFSTCASRRFLFGVLFAICFSCLAAHVFALNFLARKNHGPRGWVIFTVALLLTLVEVI 181
Query: 591 INTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYVMLLLLCAFTGAW 770
INTEWLIITLVR NMDFVMALIYVMLLLL AF GAW
Sbjct: 182 INTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIA-NMDFVMALIYVMLLLLGAFLGAW 240
Query: 771 PALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQHHSPSWDDPTLAIALAANA 950
PALCGR+KRWRKHGVFVLLTTATS+AIWV WIVMYTYGN+QH+SP+WDDPTLAIALAANA
Sbjct: 241 PALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTLAIALAANA 300
Query: 951 WVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYEAILKEQKGQSMFVENKAFSMDEP 1130
W FVLFYVIPEVSQVTK+SPEQSYQGD+YPTRGVGYE ILKEQKGQSMFVENKAFSMDEP
Sbjct: 301 WAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQKGQSMFVENKAFSMDEP 360
Query: 1131 ASGKRPVSPYSGYNGQLLTSVYQPTEMTVMHKAPSEGAYDVILPRATANSQVMGSANSTL 1310
+ KRPVSPYSGYNGQLLTSVYQPTEM +MHK PSEGAYD+ILPRATANSQVMGSANSTL
Sbjct: 361 VAAKRPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTL 420
Query: 1311 RAEDIYAAQSLQEATLPKEGKNSQVFRNPYVWD 1409
RAED+Y+AQS Q AT PK+GKNSQVFRNPYVWD
Sbjct: 421 RAEDMYSAQSHQAATPPKDGKNSQVFRNPYVWD 453
>ref|NP_057319.1| G-protein coupled receptor family C group 5 member B precursor [Homo
sapiens].
Length = 403
Score = 244 bits (623), Expect = 2e-64
Identities = 146/384 (38%), Positives = 203/384 (52%), Gaps = 23/384 (5%)
Frame = +3
Query: 138 SAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFV 317
S A + GC DL P Y +LCD WGIV+EAVAGAG + +L +IL+ LPF+
Sbjct: 25 SVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFI 84
Query: 318 QDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHV 497
++ +K+S A +++ D + C+ RRFL+GVLFA+CFSCL++
Sbjct: 85 KEKEKKSPVGLHFLFLLGTLGLFGLTFAFIIQEDETICSVRRFLWGVLFALCFSCLLSQA 144
Query: 498 FALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXX 677
+ + LVR GP GW +AL L LV+VII EWL++T++R
Sbjct: 145 WRVRRLVRHGTGPAGWQLVGLALCLMLVQVIIAVEWLVLTVLRDTRPACAYEP------- 197
Query: 678 XXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWV 857
MDFVMALIY M+LL+ A LCG+FKRW+ +G F+L+T S+ IWV
Sbjct: 198 ---------MDFVMALIYDMVLLVVTLGLALFTLCGKFKRWKLNGAFLLITAFLSVLIWV 248
Query: 858 AWIVMYTYGN-RQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
AW+ MY +GN + +W+DPTLAI LAA+ WVFV+F+ IPE+ T Q +
Sbjct: 249 AWMTMYLFGNVKLQQGDAWNDPTLAITLAASGWVFVIFHAIPEI-HCTLLPALQENTPNY 307
Query: 1035 YPTRGVGYEAILKEQKGQ--SMFVENKAFSMDE--------------------PASGKRP 1148
+ T E+ Q ++ENKAFSMDE + GKRP
Sbjct: 308 FDTSQPRMRETAFEEDVQLPRAYMENKAFSMDEHNAALRTAGFPNGSLGKRPSGSLGKRP 367
Query: 1149 VSPYSGYNGQLLTSVYQPTEMTVM 1220
+P+ ++VYQPTEM V+
Sbjct: 368 SAPFR-------SNVYQPTEMAVV 384
>ref|NP_003970.1| retinoic acid-induced protein 3 [Homo sapiens].
Length = 357
Score = 181 bits (460), Expect = 1e-45
Identities = 121/329 (36%), Positives = 164/329 (49%), Gaps = 4/329 (1%)
Frame = +3
Query: 165 PPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIIT--AFVLTI-ILVASLPFVQDTKKR 335
P GC L YY LCD++EAWGIVLE VA AG++T AF+LT+ ILV VQD+ +R
Sbjct: 6 PDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCK---VQDSNRR 62
Query: 336 SXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFL 515
A ++ D ST +R FLFG+LF+ICFSCL+AH +L L
Sbjct: 63 KMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLTKL 122
Query: 516 VRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXX 695
VR V +A+ SLV+ +I E++++T+ R
Sbjct: 123 VRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRR--------- 173
Query: 696 XXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMY 875
N DFV+ L YV+ L+ F + CG F W++HG + LT SIAIWVAWI +
Sbjct: 174 --NEDFVLLLTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLL 231
Query: 876 TYGNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVG 1055
+ WDD L+ ALAAN WVF+L YV PE +TK Y +
Sbjct: 232 MLPDFDRR---WDDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVE-------- 280
Query: 1056 YEAILKEQKGQSMF-VENKAFSMDEPASG 1139
+A K Q + + VEN+A+S +E G
Sbjct: 281 -DAFCKPQLVKKSYGVENRAYSQEEITQG 308
>ref|NP_061124.1| G-protein coupled receptor family C group 5 member D [Homo sapiens].
Length = 345
Score = 160 bits (406), Expect = 2e-39
Identities = 104/345 (30%), Positives = 161/345 (46%), Gaps = 8/345 (2%)
Frame = +3
Query: 198 YYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXX 377
Y+ LCD WGI+LE++A GI+ +L + + + +QD + +
Sbjct: 12 YFLLCDAEGPWGIILESLAILGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVL 71
Query: 378 XXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFT 557
A +++ + T R FLFGVLFA+CFSCL+AH L LVR G V+F+
Sbjct: 72 GLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVR------GCVSFS 125
Query: 558 ------VALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVM 719
+A+ SL+++II TE++ + + R N+DFV+
Sbjct: 126 WTTILCIAIGCSLLQIIIATEYVTLIMTRGMMFVNMTPCQL-------------NVDFVV 172
Query: 720 ALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQ-H 896
L+YV+ L+ F + CG + W++HG + +T SI IWV WI M GN Q
Sbjct: 173 LLVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFITVLFSIIIWVVWISMLLRGNPQFQ 232
Query: 897 HSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQ-SYQGDLYPTRGVGYEAILK 1073
P WDDP + IAL NAWVF+L Y++PE+ + ++ ++ QG+ P Y+
Sbjct: 233 RQPQWDDPVVCIALVTNAWVFLLLYIVPELCILYRSCRQECPLQGNACPV--TAYQ---- 286
Query: 1074 EQKGQSMFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTE 1208
S VEN+ S + G + Y + PT+
Sbjct: 287 ----HSFQVENQELSRARDSDGAEEDVALTSYGTPIQPQTVDPTQ 327
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,545,929
Number of extensions: 1435573
Number of successful extensions: 7796
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7724
Number of HSP's successfully gapped: 5
Length of query: 502
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 395
Effective length of database: 14,770,016
Effective search space: 5834156320
Effective search space used: 5834156320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003106
(1508 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103808.1| G-protein coupled receptor family C group 5 ... 677 0.0
Alignment gi|NP_671750.2| G-protein coupled receptor family C group 5 mem... 677 0.0
Alignment gi|NP_001103807.1| G-protein coupled receptor family C group 5 ... 655 0.0
Alignment gi|NP_001182703.1| G-protein coupled receptor family C group 5 ... 241 1e-63
Alignment gi|NP_071865.1| G-protein coupled receptor family C group 5 mem... 240 2e-63
Alignment gi|NP_852109.2| retinoic acid-induced protein 3 [Mus musculus]. 194 1e-49
Alignment gi|NP_444348.1| G-protein coupled receptor family C group 5 mem... 152 9e-37
Alignment gi|NP_001192325.1| G-protein coupled receptor family C group 5 ... 152 9e-37
>ref|NP_001103808.1| G-protein coupled receptor family C group 5 member C isoform b [Mus
musculus].
Length = 440
Score = 677 bits (1747), Expect = 0.0
Identities = 342/425 (80%), Positives = 351/425 (82%)
Frame = +3
Query: 135 FSAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPF 314
F A Q+HAPPGCSPDL+PLYYNLCDRS AWGIVLEAVAGAGIIT FVLTIILVASLPF
Sbjct: 17 FPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPF 76
Query: 315 VQDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAH 494
VQDTKKRS ACVVKPDFSTCASRRFLFGVLFAICFSCLVAH
Sbjct: 77 VQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVAH 136
Query: 495 VFALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXX 674
V +LNFL RKNHGPRGWV FTVALLL+LVEVIINTEWLIITLVR
Sbjct: 137 VLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVSADST 196
Query: 675 XXXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIW 854
NMDFVMALIYVMLLLL AF GAWP LCGRFKRWRKHGVFVLLTT SIAIW
Sbjct: 197 MTSPCAIA-NMDFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIW 255
Query: 855 VAWIVMYTYGNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
V WIVMYTYGN QHHSP+WDDPTLAIALAANAW FVLFYVIPEVSQVTK SPEQSYQGD+
Sbjct: 256 VVWIVMYTYGNEQHHSPTWDDPTLAIALAANAWTFVLFYVIPEVSQVTKPSPEQSYQGDM 315
Query: 1035 YPTRGVGYEAILKEQKGQSMFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMT 1214
YPTRGVGYE ILKEQ GQSMFVENKAFSMDEPAS KRPVSPYSGYNGQLLTSVYQPTEM
Sbjct: 316 YPTRGVGYETILKEQTGQSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMA 375
Query: 1215 VMHKAPSEGAYDVILPRATANSQVMGSANSTLRAEDIYAAQSLQEATLPKEGKNSQVFRN 1394
+MHK PSEGAYDVILPRATANSQVMGSANSTLRAED+Y QS Q AT PK+GK SQVFRN
Sbjct: 376 LMHKGPSEGAYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPPKDGKISQVFRN 435
Query: 1395 PYVWD 1409
PYVWD
Sbjct: 436 PYVWD 440
>ref|NP_671750.2| G-protein coupled receptor family C group 5 member C isoform b [Mus
musculus].
Length = 440
Score = 677 bits (1747), Expect = 0.0
Identities = 342/425 (80%), Positives = 351/425 (82%)
Frame = +3
Query: 135 FSAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPF 314
F A Q+HAPPGCSPDL+PLYYNLCDRS AWGIVLEAVAGAGIIT FVLTIILVASLPF
Sbjct: 17 FPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPF 76
Query: 315 VQDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAH 494
VQDTKKRS ACVVKPDFSTCASRRFLFGVLFAICFSCLVAH
Sbjct: 77 VQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVAH 136
Query: 495 VFALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXX 674
V +LNFL RKNHGPRGWV FTVALLL+LVEVIINTEWLIITLVR
Sbjct: 137 VLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVSADST 196
Query: 675 XXXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIW 854
NMDFVMALIYVMLLLL AF GAWP LCGRFKRWRKHGVFVLLTT SIAIW
Sbjct: 197 MTSPCAIA-NMDFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIW 255
Query: 855 VAWIVMYTYGNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
V WIVMYTYGN QHHSP+WDDPTLAIALAANAW FVLFYVIPEVSQVTK SPEQSYQGD+
Sbjct: 256 VVWIVMYTYGNEQHHSPTWDDPTLAIALAANAWTFVLFYVIPEVSQVTKPSPEQSYQGDM 315
Query: 1035 YPTRGVGYEAILKEQKGQSMFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMT 1214
YPTRGVGYE ILKEQ GQSMFVENKAFSMDEPAS KRPVSPYSGYNGQLLTSVYQPTEM
Sbjct: 316 YPTRGVGYETILKEQTGQSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMA 375
Query: 1215 VMHKAPSEGAYDVILPRATANSQVMGSANSTLRAEDIYAAQSLQEATLPKEGKNSQVFRN 1394
+MHK PSEGAYDVILPRATANSQVMGSANSTLRAED+Y QS Q AT PK+GK SQVFRN
Sbjct: 376 LMHKGPSEGAYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPPKDGKISQVFRN 435
Query: 1395 PYVWD 1409
PYVWD
Sbjct: 436 PYVWD 440
>ref|NP_001103807.1| G-protein coupled receptor family C group 5 member C isoform a [Mus
musculus].
Length = 441
Score = 655 bits (1691), Expect = 0.0
Identities = 333/416 (80%), Positives = 342/416 (82%)
Frame = +3
Query: 135 FSAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPF 314
F A Q+HAPPGCSPDL+PLYYNLCDRS AWGIVLEAVAGAGIIT FVLTIILVASLPF
Sbjct: 17 FPGALAQNHAPPGCSPDLDPLYYNLCDRSGAWGIVLEAVAGAGIITTFVLTIILVASLPF 76
Query: 315 VQDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAH 494
VQDTKKRS ACVVKPDFSTCASRRFLFGVLFAICFSCLVAH
Sbjct: 77 VQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLVAH 136
Query: 495 VFALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXX 674
V +LNFL RKNHGPRGWV FTVALLL+LVEVIINTEWLIITLVR
Sbjct: 137 VLSLNFLTRKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGGGQVSPLGNVSADST 196
Query: 675 XXXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIW 854
NMDFVMALIYVMLLLL AF GAWP LCGRFKRWRKHGVFVLLTT SIAIW
Sbjct: 197 MTSPCAIA-NMDFVMALIYVMLLLLTAFLGAWPTLCGRFKRWRKHGVFVLLTTVISIAIW 255
Query: 855 VAWIVMYTYGNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
V WIVMYTYGN QHHSP+WDDPTLAIALAANAW FVLFYVIPEVSQVTK SPEQSYQGD+
Sbjct: 256 VVWIVMYTYGNEQHHSPTWDDPTLAIALAANAWTFVLFYVIPEVSQVTKPSPEQSYQGDM 315
Query: 1035 YPTRGVGYEAILKEQKGQSMFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMT 1214
YPTRGVGYE ILKEQ GQSMFVENKAFSMDEPAS KRPVSPYSGYNGQLLTSVYQPTEM
Sbjct: 316 YPTRGVGYETILKEQTGQSMFVENKAFSMDEPASAKRPVSPYSGYNGQLLTSVYQPTEMA 375
Query: 1215 VMHKAPSEGAYDVILPRATANSQVMGSANSTLRAEDIYAAQSLQEATLPKEGKNSQ 1382
+MHK PSEGAYDVILPRATANSQVMGSANSTLRAED+Y QS Q AT PK+GK SQ
Sbjct: 376 LMHKGPSEGAYDVILPRATANSQVMGSANSTLRAEDMYMVQSHQVATPPKDGKISQ 431
>ref|NP_001182703.1| G-protein coupled receptor family C group 5 member B isoform 1
precursor [Mus musculus].
Length = 411
Score = 241 bits (615), Expect = 1e-63
Identities = 145/392 (36%), Positives = 204/392 (52%), Gaps = 23/392 (5%)
Frame = +3
Query: 138 SAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFV 317
S A + GC DL P Y +LCD WGIV+EAVAGAG + +L +IL+ LPF+
Sbjct: 25 SVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFI 84
Query: 318 QDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHV 497
+D +++ A +++ D + C+ RRFL+GVLFA+CFSCL++
Sbjct: 85 KDKERKRPVCLHFLFLLGTLGLFGLTFAFIIQMDETICSIRRFLWGVLFALCFSCLLSQA 144
Query: 498 FALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXX 677
+ + LVR+ P W ++AL L LV+VII TEWL++T++R
Sbjct: 145 WRVRRLVRQGTSPASWQLVSLALCLMLVQVIIATEWLVLTVLRDTKPACAYEP------- 197
Query: 678 XXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWV 857
MDFVMALIY M+LL + LCG+FKRW+ +G F+L+TT S IWV
Sbjct: 198 ---------MDFVMALIYDMVLLAITLAQSLFTLCGKFKRWKVNGAFILVTTFLSALIWV 248
Query: 858 AWIVMYTYGNRQ-HHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
W+ MY +GN +W DPTLAI LAA+ WVFV+F+ IPE+ T P Q +
Sbjct: 249 VWMTMYLFGNSLIKQGDAWSDPTLAITLAASGWVFVIFHAIPEI-HYTLLPPLQENPPNY 307
Query: 1035 YPTR--GVGYEAILKEQKGQSMFVENKAFSMDE--------------------PASGKRP 1148
+ T + A +E ++ENKAFSMDE + GK+P
Sbjct: 308 FDTSQPRMRETAFDEEMHLPRAYMENKAFSMDEHNAALRSAVGFSNGSLEQRSSSLGKKP 367
Query: 1149 VSPYSGYNGQLLTSVYQPTEMTVMHKAPSEGA 1244
S + + ++VYQPTEM V+ +E A
Sbjct: 368 SSLGNRPSAPFRSNVYQPTEMAVVLNGGTEMA 399
>ref|NP_071865.1| G-protein coupled receptor family C group 5 member B isoform 2
precursor [Mus musculus].
Length = 410
Score = 240 bits (613), Expect = 2e-63
Identities = 143/384 (37%), Positives = 201/384 (52%), Gaps = 23/384 (5%)
Frame = +3
Query: 138 SAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFV 317
S A + GC DL P Y +LCD WGIV+EAVAGAG + +L +IL+ LPF+
Sbjct: 25 SVASENASTSRGCGLDLLPQYVSLCDLDAIWGIVVEAVAGAGALITLLLMLILLVRLPFI 84
Query: 318 QDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHV 497
+D +++ A +++ D + C+ RRFL+GVLFA+CFSCL++
Sbjct: 85 KDKERKRPVCLHFLFLLGTLGLFGLTFAFIIQMDETICSIRRFLWGVLFALCFSCLLSQA 144
Query: 498 FALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXX 677
+ + LVR+ P W ++AL L LV+VII TEWL++T++R
Sbjct: 145 WRVRRLVRQGTSPASWQLVSLALCLMLVQVIIATEWLVLTVLRDTKPACAYEP------- 197
Query: 678 XXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWV 857
MDFVMALIY M+LL + LCG+FKRW+ +G F+L+TT S IWV
Sbjct: 198 ---------MDFVMALIYDMVLLAITLAQSLFTLCGKFKRWKVNGAFILVTTFLSALIWV 248
Query: 858 AWIVMYTYGNRQ-HHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
W+ MY +GN +W DPTLAI LAA+ WVFV+F+ IPE+ T P Q +
Sbjct: 249 VWMTMYLFGNSLIKQGDAWSDPTLAITLAASGWVFVIFHAIPEI-HYTLLPPLQENPPNY 307
Query: 1035 YPTR--GVGYEAILKEQKGQSMFVENKAFSMDE--------------------PASGKRP 1148
+ T + A +E ++ENKAFSMDE + GK+P
Sbjct: 308 FDTSQPRMRETAFDEEMHLPRAYMENKAFSMDEHNAALRSAVGFSNGSLEQRSSSLGKKP 367
Query: 1149 VSPYSGYNGQLLTSVYQPTEMTVM 1220
S + + ++VYQPTEM V+
Sbjct: 368 SSLGNRPSAPFRSNVYQPTEMAVV 391
>ref|NP_852109.2| retinoic acid-induced protein 3 [Mus musculus].
Length = 356
Score = 194 bits (494), Expect = 1e-49
Identities = 124/328 (37%), Positives = 166/328 (50%), Gaps = 2/328 (0%)
Frame = +3
Query: 162 APPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSX 341
AP GC DL+ Y+ LCD +E WGI LE +A G + LV + VQD+ KR
Sbjct: 7 APSGCRSDLDSRYHRLCDLAEGWGIALETLAAVGAVATVACMFALVFLICKVQDSNKRKM 66
Query: 342 XXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVR 521
A ++K D +T +R FLFGVLFAICFSCL+AH F L LVR
Sbjct: 67 LPAQFLFLLGVLGVFGLTFAFIIKLDGATGPTRFFLFGVLFAICFSCLLAHAFNLIKLVR 126
Query: 522 KNHGPRGW-VTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXX 698
P W V ++A+ SLV+ +I E+L++T+ R
Sbjct: 127 -GRKPLSWLVILSLAVGFSLVQDVIAIEYLVLTMNRTNVNVFSELPAPRR---------- 175
Query: 699 XNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYT 878
N DFVM LIYV++L++ F ++ CG F W++HG + T+ SIAIWVAWIV+
Sbjct: 176 -NEDFVMLLIYVLVLMVLTFFASFLVFCGSFSGWKRHGFHICFTSFLSIAIWVAWIVLLL 234
Query: 879 YGNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGY 1058
+ WDD L+ AL AN WVF+ FY++PE Q+ P Q D YP
Sbjct: 235 IPDIDR---KWDDTILSTALVANGWVFLAFYILPEFRQL----PRQRSPTD-YPVE---- 282
Query: 1059 EAILKEQ-KGQSMFVENKAFSMDEPASG 1139
+A K Q QS VEN+A+S +E G
Sbjct: 283 DAFCKPQLMKQSYGVENRAYSQEEITQG 310
>ref|NP_444348.1| G-protein coupled receptor family C group 5 member D isoform 2 [Mus
musculus].
Length = 300
Score = 152 bits (383), Expect = 9e-37
Identities = 93/285 (32%), Positives = 134/285 (47%), Gaps = 1/285 (0%)
Frame = +3
Query: 198 YYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXX 377
YY CD W IVLE++A GI+ +L + + + VQD + +
Sbjct: 12 YYLFCDNEGPWAIVLESLAVIGIVVTILLLLAFLFLMRKVQDCSQWNVLPTQFLFLLAVL 71
Query: 378 XXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFT 557
A +++ + T R FLFGVLFAICFSCL+AH L LVR
Sbjct: 72 GLFGLTFAFIIQLNHQTAPVRYFLFGVLFAICFSCLLAHASNLVKLVRGRVSFCWTTILF 131
Query: 558 VALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYVM 737
+A+ +SL++ II E++ + + R N+DFV LIYV+
Sbjct: 132 IAIGVSLLQTIIAIEYVTLIMTRGLMFEHMTPYQL-------------NVDFVCLLIYVL 178
Query: 738 LLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQ-HHSPSWD 914
L+ F + CG + W++HG + T SI IWV WI M GN Q P WD
Sbjct: 179 FLMALTFFVSKATFCGPCENWKQHGRLIFATVLVSIIIWVVWISMLLRGNPQLQRQPHWD 238
Query: 915 DPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRG 1049
D + I L NAWVF+L Y+IPE+S + ++ ++ PT+G
Sbjct: 239 DAVICIGLVTNAWVFLLIYIIPELSILYRSCRQEC------PTQG 277
>ref|NP_001192325.1| G-protein coupled receptor family C group 5 member D isoform 1 [Mus
musculus].
Length = 344
Score = 152 bits (383), Expect = 9e-37
Identities = 93/285 (32%), Positives = 134/285 (47%), Gaps = 1/285 (0%)
Frame = +3
Query: 198 YYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXX 377
YY CD W IVLE++A GI+ +L + + + VQD + +
Sbjct: 12 YYLFCDNEGPWAIVLESLAVIGIVVTILLLLAFLFLMRKVQDCSQWNVLPTQFLFLLAVL 71
Query: 378 XXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFT 557
A +++ + T R FLFGVLFAICFSCL+AH L LVR
Sbjct: 72 GLFGLTFAFIIQLNHQTAPVRYFLFGVLFAICFSCLLAHASNLVKLVRGRVSFCWTTILF 131
Query: 558 VALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYVM 737
+A+ +SL++ II E++ + + R N+DFV LIYV+
Sbjct: 132 IAIGVSLLQTIIAIEYVTLIMTRGLMFEHMTPYQL-------------NVDFVCLLIYVL 178
Query: 738 LLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQ-HHSPSWD 914
L+ F + CG + W++HG + T SI IWV WI M GN Q P WD
Sbjct: 179 FLMALTFFVSKATFCGPCENWKQHGRLIFATVLVSIIIWVVWISMLLRGNPQLQRQPHWD 238
Query: 915 DPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRG 1049
D + I L NAWVF+L Y+IPE+S + ++ ++ PT+G
Sbjct: 239 DAVICIGLVTNAWVFLLIYIIPELSILYRSCRQEC------PTQG 277
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,133,232
Number of extensions: 1182628
Number of successful extensions: 6118
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6032
Number of HSP's successfully gapped: 8
Length of query: 502
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 396
Effective length of database: 12,433,743
Effective search space: 4923762228
Effective search space used: 4923762228
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003106
(1508 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361359.1| PREDICTED: G-protein coupled receptor family... 709 0.0
Alignment gi|XP_003354630.1| PREDICTED: G-protein coupled receptor family... 224 1e-58
Alignment gi|XP_003362205.1| PREDICTED: retinoic acid-induced protein 3-l... 182 3e-46
Alignment gi|XP_003361589.1| PREDICTED: LOW QUALITY PROTEIN: G-protein co... 140 1e-33
>ref|XP_003361359.1| PREDICTED: G-protein coupled receptor family C group 5 member C-like,
partial [Sus scrofa].
Length = 613
Score = 709 bits (1829), Expect = 0.0
Identities = 378/459 (82%), Positives = 379/459 (82%), Gaps = 7/459 (1%)
Frame = +3
Query: 54 TQLEAGLGARMAVHKAXXXXXXXXXXXFSAAHGQSHAPPGCSPDLNPLYYNLCD------ 215
TQLEAGLGARMAVHKA FSAAHGQSHAPPGCSPDLNPLYYNLCD
Sbjct: 171 TQLEAGLGARMAVHKALLMCLGLPLFLFSAAHGQSHAPPGCSPDLNPLYYNLCDPSEAWX 230
Query: 216 -RSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXXXXXXXXX 392
RSEAWGIVLEAVAGAG ILVASLPFVQDTKKRS
Sbjct: 231 DRSEAWGIVLEAVAGAGXXXXXXXXXILVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCL 290
Query: 393 XXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFTVALLL 572
ACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFTVALLL
Sbjct: 291 VFACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVTFTVALLL 350
Query: 573 SLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIYVMLLLLC 752
SLVEVIINTEWLIITLVR NMDFVMALIYVMLLLLC
Sbjct: 351 SLVEVIINTEWLIITLVRGGGGEAGPPGNXXXXXXXXSPCAIANMDFVMALIYVMLLLLC 410
Query: 753 AFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQHHSPSWDDPTLAI 932
AFTGAWPALCGRFKRWRKHGVFVLLTTATSI HHSPSWDDPTLAI
Sbjct: 411 AFTGAWPALCGRFKRWRKHGVFVLLTTATSI----------------HHSPSWDDPTLAI 454
Query: 933 ALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYEAILKEQKGQSMFVENKA 1112
ALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYEAILKEQKGQSMFVENKA
Sbjct: 455 ALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYEAILKEQKGQSMFVENKA 514
Query: 1113 FSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMTVMHKAPSEGAYDVILPRATANSQVMG 1292
FSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMT+MHKAPSEGAYDVILPRATANSQVMG
Sbjct: 515 FSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMTLMHKAPSEGAYDVILPRATANSQVMG 574
Query: 1293 SANSTLRAEDIYAAQSLQEATLPKEGKNSQVFRNPYVWD 1409
SANSTLRAEDIYAAQSLQEATLPKEGKNSQVFRNPYVWD
Sbjct: 575 SANSTLRAEDIYAAQSLQEATLPKEGKNSQVFRNPYVWD 613
>ref|XP_003354630.1| PREDICTED: G-protein coupled receptor family C group 5 member B-like
[Sus scrofa].
Length = 551
Score = 224 bits (570), Expect = 1e-58
Identities = 126/346 (36%), Positives = 186/346 (53%), Gaps = 4/346 (1%)
Frame = +3
Query: 138 SAAHGQSHAPPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFV 317
S A + GC DL P Y +LCD WGIV+EAVAGAG + +L ++L+ + F+
Sbjct: 129 SGASENASTSRGCGLDLLPQYVSLCDLDTIWGIVVEAVAGAGALITLLLMLMLMGRIAFI 188
Query: 318 QDTKKRSXXXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHV 497
+D +K+ A +++ D + C+ RRFL+GVLFA+CFSCL++
Sbjct: 189 KDKEKKDPVGLHFLILLGTVGLFGLTFAFIIREDETICSVRRFLWGVLFALCFSCLLSQA 248
Query: 498 FALNFLVRKNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXX 677
+ + LVR P W +AL L LV+VII EWL++T++R
Sbjct: 249 WRVRRLVRHGKSPSSWQLVGMALCLMLVQVIIAIEWLVLTVLRDAKPACAYEP------- 301
Query: 678 XXXXXXXXNMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWV 857
MDF MALIY M+LL+ A LCG+FK+W+++G +L+T S+ IWV
Sbjct: 302 ---------MDFAMALIYDMVLLVATLGLALFTLCGKFKKWKQNGACLLVTAFLSLLIWV 352
Query: 858 AWIVMYTYGNRQ-HHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDL 1034
AW+ MY +GN + +W DPTLAI L A+ WVFV+F+ IPE+ +P+++
Sbjct: 353 AWMTMYLFGNAELRQGDAWGDPTLAITLVASGWVFVIFHAIPEIHCTILPAPQENTPNYF 412
Query: 1035 YPTRGVGYEAILKEQ-KGQSMFVENKAFSMDEPASG--KRPVSPYS 1163
++ E +E + ++ENKAFSMDE +G + P P S
Sbjct: 413 DTSQPRMRETAFEEDVQLPRTYMENKAFSMDEHNAGCAQLPAHPCS 458
>ref|XP_003362205.1| PREDICTED: retinoic acid-induced protein 3-like [Sus scrofa].
Length = 357
Score = 182 bits (463), Expect = 3e-46
Identities = 109/327 (33%), Positives = 158/327 (48%), Gaps = 1/327 (0%)
Frame = +3
Query: 162 APPGCSPDLNPLYYNLCDRSEAWGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSX 341
AP GC +L+P YY LCD+ WGI+LEA+A G +++ + L+ + VQD+ +R
Sbjct: 5 APSGCRSNLDPRYYRLCDQKAVWGIILEALAALGAVSSVTFMVALLVLICKVQDSNRRKV 64
Query: 342 XXXXXXXXXXXXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVR 521
A +++ D ST +R FLFG+LFA+CFSCL+ H F L LV
Sbjct: 65 LPIQFLFLLGVLGVFGLTFAFIIQLDGSTGPTRFFLFGILFALCFSCLLVHAFNLTRLVH 124
Query: 522 KNHGPRGWVTFTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXX 701
G V +A+ SLV+ +I E++++T+ R
Sbjct: 125 GRRGLSLLVMLGLAVAFSLVQDVIAVEYIVLTMNR-----------TNVNIFSELPPPRR 173
Query: 702 NMDFVMALIYVMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTY 881
N DFVM LIYV+ L++ F A G F W++HG + TT ++ +WV WI +
Sbjct: 174 NEDFVMLLIYVLFLMVLTFLTASFVFRGPFTGWKRHGAHIYFTTLLTLTVWVVWIALLFV 233
Query: 882 GNRQHHSPSWDDPTLAIALAANAWVFVLFYVIPEVSQVTKASPEQSYQGDLYPTRGVGYE 1061
P WDD L+ AL AN WVF+L YV+PE +TK Y + +
Sbjct: 234 PT---PGPQWDDTILSTALVANGWVFLLAYVVPEFQLLTKQRNTMDYPLE---------D 281
Query: 1062 AILKEQ-KGQSMFVENKAFSMDEPASG 1139
A K Q QS VEN+A++ + G
Sbjct: 282 AFCKPQLMKQSYGVENRAYAQEGITQG 308
>ref|XP_003361589.1| PREDICTED: LOW QUALITY PROTEIN: G-protein coupled receptor family C
group 5 member D-like [Sus scrofa].
Length = 342
Score = 140 bits (354), Expect = 1e-33
Identities = 100/357 (28%), Positives = 155/357 (43%), Gaps = 4/357 (1%)
Frame = +3
Query: 201 YNL-CDRSEA--WGIVLEAVAGAGIITAFVLTIILVASLPFVQDTKKRSXXXXXXXXXXX 371
YNL CD WGIVLE++A GI+ +L + + + V+D + +
Sbjct: 12 YNLFCDTGXEGPWGIVLESLAAIGIVVTVILLLAFLFLMRRVRDCSQWNVLPTQFLFLLG 71
Query: 372 XXXXXXXXXACVVKPDFSTCASRRFLFGVLFAICFSCLVAHVFALNFLVRKNHGPRGWVT 551
A +++ + T GVLFA+CFSCL+AH L LVR
Sbjct: 72 VLGLFGLAFAFIIQFNEQTAPXXXXXXGVLFALCFSCLLAHASNLVKLVRGRVSFSWTTI 131
Query: 552 FTVALLLSLVEVIINTEWLIITLVRXXXXXXXXXXXXXXXXXXXXXXXXXNMDFVMALIY 731
+A+ +SL++ II E++ + + R ++DFV+ L+Y
Sbjct: 132 LCIAIGVSLLQTIIAIEYVTLIMTRGMRFVHMTPCQL-------------HVDFVVLLVY 178
Query: 732 VMLLLLCAFTGAWPALCGRFKRWRKHGVFVLLTTATSIAIWVAWIVMYTYGNRQHHSPSW 911
V+ L+ F A CG + W++HG + +T SI IWV WI + GN Q P W
Sbjct: 179 VLFLMALTFFVAKATFCGPCENWKQHGRLIFVTVLISIIIWVVWISLLMRGNPQ---PQW 235
Query: 912 DDPTLAIALAANAWVFVLFYVIPEVSQVTKAS-PEQSYQGDLYPTRGVGYEAILKEQKGQ 1088
DDP + IAL NAWVF+L Y+IPE+ + ++S ++ Q P Y+ +
Sbjct: 236 DDPIICIALVTNAWVFLLLYIIPELCILYRSSRQDRPLQAGACPV--PAYQ--------R 285
Query: 1089 SMFVENKAFSMDEPASGKRPVSPYSGYNGQLLTSVYQPTEMTVMHKAPSEGAYDVIL 1259
S EN+ S + G + Y PT+ + +A D +L
Sbjct: 286 SFRAENQELSRARDSEGAEEDVALTSYGSPTQPQTVDPTQECFIPRAKLSPEQDAVL 342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,424,662
Number of extensions: 936506
Number of successful extensions: 5414
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5367
Number of HSP's successfully gapped: 4
Length of query: 502
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,779,541
Effective search space: 3503036859
Effective search space used: 3503036859
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003106
(1508 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118714.1| Sus scrofa unplaced genomic scaffold ChrUScaf1990 737 0.0
Sscrofa_Chr12 446 e-122
Sscrofa_Chr01 64 2e-07
>gb|JH118714.1| Sus scrofa unplaced genomic scaffold ChrUScaf1990
Length = 42968
Score = 737 bits (372), Expect = 0.0
Identities = 372/372 (100%)
Strand = Plus / Plus
Query: 289 tcatccttgtggccagcctcccgtttgtgcaggacaccaagaagcggagcctgctaggga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8842 tcatccttgtggccagcctcccgtttgtgcaggacaccaagaagcggagcctgctaggga 8901
Query: 349 cccaggtgttcttccttctggggaccctgggcctcttctgcctcgtctttgcctgcgtgg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8902 cccaggtgttcttccttctggggaccctgggcctcttctgcctcgtctttgcctgcgtgg 8961
Query: 409 tgaagcctgacttctccacctgtgcctctcggcgcttcctctttggggtcctgttcgcca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8962 tgaagcctgacttctccacctgtgcctctcggcgcttcctctttggggtcctgttcgcca 9021
Query: 469 tctgcttctcctgcctggtggcccacgtctttgccctcaacttcctggtccggaagaacc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9022 tctgcttctcctgcctggtggcccacgtctttgccctcaacttcctggtccggaagaacc 9081
Query: 529 acgggccccggggctgggtgaccttcaccgtggccctgctgctgagcctcgtggaggtga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9082 acgggccccggggctgggtgaccttcaccgtggccctgctgctgagcctcgtggaggtga 9141
Query: 589 tcatcaacacggagtggctgatcatcacgctggtgcggggcgggggcggtgaggctggcc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9142 tcatcaacacggagtggctgatcatcacgctggtgcggggcgggggcggtgaggctggcc 9201
Query: 649 ctccgggcaacg 660
||||||||||||
Sbjct: 9202 ctccgggcaacg 9213
Score = 488 bits (246), Expect = e-135
Identities = 252/254 (99%)
Strand = Plus / Plus
Query: 886 accggcagcaccacagcccctcgtgggacgaccccacgctggccatcgccctcgccgcca 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9585 accggcagcaccacagcccctcgtgggacgaccccacgctggccatcgccctcgccgcca 9644
Query: 946 acgcctgggtcttcgtcctcttctacgtcatccctgaggtctcccaggtgaccaaggcca 1005
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9645 acgcctgggtcttcgtcctcttctatgtcatccctgaggtctcccaggtgaccaaggcca 9704
Query: 1006 gcccggagcaaagctaccagggggacctgtacccgacccggggcgtgggctatgaggcca 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9705 gcccggagcaaagctaccagggggacctgtacccgacccggggcgtgggctatgaggcca 9764
Query: 1066 tcctgaaggagcagaagggccagagcatgtttgtggaaaacaaagcattttccatggacg 1125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9765 tcctgaaggagcagaagggccagagcatgtttgtagaaaacaaagcattttccatggacg 9824
Query: 1126 agccggcctcaggt 1139
||||||||||||||
Sbjct: 9825 agccggcctcaggt 9838
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 1232 gtctgaaggagcttacgacgtcatcctccctcgggccaccgccaacagccaggtgatggg 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15141 gtctgaaggagcttacgacgtcatcctccctcgggccaccgccaacagccaggtgatggg 15200
Query: 1292 cagtgccaactccacgctgcgggccgaggacatatacgcggcccagagcctccaggaggc 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15201 cagtgccaactccacgctgcgggccgaggacatatacgcggcccagagcctccaggaggc 15260
Query: 1352 cacgctgccgaaggaaggcaagaactctcaggtctttagaaatccctatgtgtgggactg 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15261 cacgctgccgaaggaaggcaagaactctcaggtctttagaaatccctatgtgtgggactg 15320
Query: 1412 agtcagctgccaccaggaggaggtgggcagattgggggagggtct 1456
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15321 agtcagctgccaccaggaggaggtgggcagattgggggagggtct 15365
Score = 353 bits (178), Expect = 2e-94
Identities = 181/182 (99%)
Strand = Plus / Plus
Query: 50 agggacccagctggaggctggcctgggagccaggatggccgtccacaaagccttgctgat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8508 agggacccagctggaggctggcctgggagccaggatggccgtccacaaagccttgctgat 8567
Query: 110 gtgcctgggactccctctcttcctgttctccgcagcccacggccagagccatgccccacc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8568 gtgcctgggactccctctcttcctgttctccgcagcccacggccagagccatgccccacc 8627
Query: 170 cggctgcagcccggacctcaaccccctctattacaacctgtgtgaccgctcggaggcctg 229
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8628 cggctgcagcccggacctcaaccccctctattacaacctgtgtgacccctcggaggcctg 8687
Query: 230 gg 231
||
Sbjct: 8688 gg 8689
Score = 339 bits (171), Expect = 3e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 682 cctccccctgtgccatcgccaacatggactttgtcatggcactcatctatgtcatgctgc 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9314 cctccccctgtgccatcgccaacatggactttgtcatggcactcatctatgtcatgctgc 9373
Query: 742 tgctgctgtgtgccttcacgggggcctggcctgccctgtgcggccgcttcaagcgctggc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9374 tgctgctgtgtgccttcacgggggcctggcctgccctgtgcggccgcttcaagcgctggc 9433
Query: 802 ggaagcatggggtcttcgtgctgctgaccacggccacctccatcgccatct 852
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9434 ggaagcatggggtcttcgtgctgctgaccacggccacctccatcgccatct 9484
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1135 caggtaaaagaccggtgtcaccgtacagcgggtacaacgggcagctgctgaccagcgtct 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12603 caggtaaaagaccggtgtcaccgtacagcgggtacaacgggcagctgctgaccagcgtct 12662
Query: 1195 accagcccactgagatgactgtgatgcacaaagccccg 1232
|||||||||||||||||||| |||||||||||||||||
Sbjct: 12663 accagcccactgagatgactctgatgcacaaagccccg 12700
>Sscrofa_Chr12
|| Length = 63588571
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 1232 gtctgaaggagcttacgacgtcatcctccctcgggccaccgccaacagccaggtgatggg 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6735763 gtctgaaggagcttacgacgtcatcctccctcgggccaccgccaacagccaggtgatggg 6735704
Query: 1292 cagtgccaactccacgctgcgggccgaggacatatacgcggcccagagcctccaggaggc 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6735703 cagtgccaactccacgctgcgggccgaggacatatacgcggcccagagcctccaggaggc 6735644
Query: 1352 cacgctgccgaaggaaggcaagaactctcaggtctttagaaatccctatgtgtgggactg 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6735643 cacgctgccgaaggaaggcaagaactctcaggtctttagaaatccctatgtgtgggactg 6735584
Query: 1412 agtcagctgccaccaggaggaggtgggcagattgggggagggtct 1456
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6735583 agtcagctgccaccaggaggaggtgggcagattgggggagggtct 6735539
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 1 actccgatctccctccgaagccggaaagtgcgactcgtccgcagcccggagg 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6858816 actccgatctccctccgaagccggaaagtgcgactcgtccgcagcccggagg 6858867
>Sscrofa_Chr01
|| Length = 315321322
Score = 63.9 bits (32), Expect = 2e-07
Identities = 105/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 1266 gccaccgccaacagccaggtgatgggcagtgccaactccacgctgcgggccgaggacata 1325
||||| |||||||||| ||||| |||||||| || ||| | |||| ||| || ||||
Sbjct: 240593762 gccactgccaacagccccgtgataggcagtgctaattcctccctgcaggctgaaaacatc 240593821
Query: 1326 tacgcggcccagagcctccaggaggccacgctgccgaaggaaggcaagaactctcaggtc 1385
||| ||||||||||| || |||||||| ||| || ||| |||| ||||||||||||||
Sbjct: 240593822 tacatggcccagagccccctggaggccatgctcccaaag-aaggtgagaactctcaggtc 240593880
Query: 1386 tttagaaa 1393
||||||||
Sbjct: 240593881 tttagaaa 240593888
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,220,961
Number of extensions: 374
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 10
Length of query: 1508
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1487
Effective length of database: 2,808,413,156
Effective search space: 4176110362972
Effective search space used: 4176110362972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)