Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003118
(1002 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030387.1| proteasome subunit alpha type-1 [Bos taurus]. 488 e-138
Alignment gi|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [... 147 2e-35
Alignment gi|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos... 147 2e-35
Alignment gi|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus]. 137 1e-32
Alignment gi|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [... 121 8e-28
Alignment gi|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos t... 121 8e-28
Alignment gi|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus]. 121 1e-27
Alignment gi|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus]. 121 1e-27
Alignment gi|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus]. 104 1e-22
Alignment gi|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus]. 104 1e-22
>ref|NP_001030387.1| proteasome subunit alpha type-1 [Bos taurus].
Length = 263
Score = 488 bits (1257), Expect = e-138
Identities = 242/242 (100%), Positives = 242/242 (100%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 465
KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT
Sbjct: 61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 466 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM
Sbjct: 121 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 240
Query: 826 QR 831
QR
Sbjct: 241 QR 242
>ref|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 147 bits (370), Expect = 2e-35
Identities = 81/241 (33%), Positives = 139/241 (57%), Gaps = 3/241 (1%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 288
++YD +TV+SP G + Q+EYA EAVK+GS VG++ VL K++ ++L + +
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI +D+H+ ++ AGLTADAR++ N R EC + + P+ V + I + Q TQ
Sbjct: 63 KICALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
Query: 469 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
GRRP+G+ LI G+DD G P ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 123 SNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
N NE +K +RAL E + + KN+ + I+ ++ ++ ++ + +E+
Sbjct: 183 IANDNEAIKLAIRALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEIELQVNEIEKEK 238
Query: 826 Q 828
+
Sbjct: 239 E 239
>ref|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 147 bits (370), Expect = 2e-35
Identities = 81/241 (33%), Positives = 139/241 (57%), Gaps = 3/241 (1%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 288
++YD +TV+SP G + Q+EYA EAVK+GS VG++ VL K++ ++L + +
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI +D+H+ ++ AGLTADAR++ N R EC + + P+ V + I + Q TQ
Sbjct: 63 KICALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
Query: 469 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
GRRP+G+ LI G+DD G P ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 123 SNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
N NE +K +RAL E + + KN+ + I+ ++ ++ ++ + +E+
Sbjct: 183 IANDNEAIKLAIRALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEIELQVNEIEKEK 238
Query: 826 Q 828
+
Sbjct: 239 E 239
>ref|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus].
Length = 248
Score = 137 bits (346), Expect = 1e-32
Identities = 79/239 (33%), Positives = 137/239 (57%), Gaps = 3/239 (1%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 294
YD +TV+SP G + Q+EYA EAVK+GS VG++ K VL K++ ++L + +KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 475 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 828
+ +K ++AL E + + KN+ + ++ +D I + +++ ++ +E+ +
Sbjct: 183 TDDLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYVAEIEKEKE 237
>ref|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [Bos taurus].
Length = 234
Score = 121 bits (304), Expect = 8e-28
Identities = 71/216 (32%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
M Y +T +SP G++ QIEYA+ AV G+ +VG+K+ VL K+ +S L +
Sbjct: 1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 286 K--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 459
K+ + HIG+ +G+ D R+L + R+ V+ P+P ++LV + S Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 460 PTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 639
TQ G RP+GV LLI G+++ P++FQ+ PS YF +A ++G + +T+LE+ +E
Sbjct: 121 YTQSCGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 640 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGI 747
+E L + + + L+E+ E +T N+ +GI
Sbjct: 181 DLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGI 212
>ref|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos taurus].
Length = 234
Score = 121 bits (304), Expect = 8e-28
Identities = 71/216 (32%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
M Y +T +SP G++ QIEYA+ AV G+ +VG+K+ VL K+ +S L +
Sbjct: 1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 286 K--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 459
K+ + HIG+ +G+ D R+L + R+ V+ P+P ++LV + S Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 460 PTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 639
TQ G RP+GV LLI G+++ P++FQ+ PS YF +A ++G + +T+LE+ +E
Sbjct: 121 YTQSCGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 640 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGI 747
+E L + + + L+E+ E +T N+ +GI
Sbjct: 181 DLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGI 212
>ref|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].
Length = 241
Score = 121 bits (303), Expect = 1e-27
Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 9/243 (3%)
Frame = +1
Query: 112 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQ 285
R++YD V +SP+GR+ Q+EYA+EA+K GS +G+++ L KR S L +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSLIG 444
+KI+ +D HIG +++GL ADA+ L + R E + F ++ + VS L G
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 445 SKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 624
+ P RP+GV LL G D+ GP +F PS + C A +IG+ S+ A++ L+
Sbjct: 125 EEDADPGAM--SRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 625 RHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 804
+ M L E +K L L++ + E+ L N+ + V F ++ +++ +
Sbjct: 183 EVYHKSM--TLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEELEEVI 238
Query: 805 EGL 813
+ +
Sbjct: 239 KDI 241
>ref|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus].
Length = 234
Score = 121 bits (303), Expect = 1e-27
Identities = 71/216 (32%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
M Y +T +SP G++ QIEYA+ AV G+ +VG+K+ VL K+ +S L +
Sbjct: 1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 286 K--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 459
K+ + HIG+ +G+ D R+L + R+ V+ P+P ++LV + S Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 460 PTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 639
TQ G RP+GV LLI G+++ P++FQ+ PS YF +A ++G + +T+LE+ +E
Sbjct: 121 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 640 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGI 747
+E L + + + L+E+ E +T N+ +GI
Sbjct: 181 DLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGI 212
>ref|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus].
Length = 246
Score = 104 bits (260), Expect = 1e-22
Identities = 62/239 (25%), Positives = 122/239 (51%), Gaps = 5/239 (2%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSEL--AAHQKK 291
+D +T++SP+GR++Q+EYA +A+ QG T V ++ K AV+V K+ +L ++
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 292 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQR 471
+ + +IG + G+TAD+R R E + ++ + +PV L I +Q+ TQ
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 472 YGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 648
RP G +++ G D + GP +++ P+ Y +A + G + + ++LE+ + + +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 649 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG-KDLEFTIYDDDDVSPFLEGLEER 822
+ V+ + L L D + +G+V ++ +F I + ++ L L ER
Sbjct: 189 WTFEQTVETAITCLSTVLSI--DFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAER 245
>ref|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus].
Length = 261
Score = 104 bits (260), Expect = 1e-22
Identities = 66/218 (30%), Positives = 117/218 (53%), Gaps = 4/218 (1%)
Frame = +1
Query: 118 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH---QK 288
+YD+ T++SP+GR++Q+EYAMEA+ +G+ + +L A +R +L +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI ++ + S+AG+T+DA +L N +R + P+P +LV+ + Q TQ
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 469 RYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
G+RP+GV LL G+D G ++Q+ PS NY +A IG S +A + L++ E
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 759
E L + ++ L +T+ + L+ + V I + ++
Sbjct: 183 EMTLKSALALAIKVLNKTMDVSK-LSAEKVEIATLTRE 219
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,618,196
Number of extensions: 830835
Number of successful extensions: 1859
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1844
Number of HSP's successfully gapped: 11
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003118
(1002 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534070.2| PREDICTED: similar to Proteasome subunit alpha ... 497 e-141
Alignment gi|XP_850510.1| PREDICTED: similar to Proteasome subunit alpha ... 467 e-132
Alignment gi|XP_854684.1| PREDICTED: similar to Proteasome subunit alpha ... 462 e-130
Alignment gi|XP_852713.1| PREDICTED: similar to Proteasome subunit alpha ... 453 e-127
Alignment gi|XP_855494.1| PREDICTED: similar to Proteasome subunit alpha ... 411 e-115
Alignment gi|XP_854972.1| PREDICTED: similar to Proteasome subunit alpha ... 409 e-114
Alignment gi|XP_854784.1| PREDICTED: similar to Proteasome subunit alpha ... 298 4e-81
Alignment gi|XP_545709.2| PREDICTED: similar to Proteasome subunit alpha ... 156 3e-38
Alignment gi|XP_547630.2| PREDICTED: similar to proteasome (prosome, macr... 145 8e-35
Alignment gi|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha ... 121 1e-27
>ref|XP_534070.2| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 368
Score = 497 bits (1280), Expect = e-141
Identities = 252/276 (91%), Positives = 253/276 (91%), Gaps = 14/276 (5%)
Frame = +1
Query: 46 RQRSLICRF--------------TGGRD*ALAGTMFRNQYDNDVTVWSPQGRIHQIEYAM 183
R R L+CR GGR AGTMFRNQYDNDVTVWSPQGRIHQIEYAM
Sbjct: 72 RSRRLLCRLPSGSCGRAPEAATSAGGRSGTRAGTMFRNQYDNDVTVWSPQGRIHQIEYAM 131
Query: 184 EAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCN 363
EAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCN
Sbjct: 132 EAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCN 191
Query: 364 FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQ 543
FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQ
Sbjct: 192 FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQ 251
Query: 544 TCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLT 723
TCPSANYFDCRAMSIGARSQSARTYLERHMS FMECNLNELVKHGLRALRETLPAEQDLT
Sbjct: 252 TCPSANYFDCRAMSIGARSQSARTYLERHMSGFMECNLNELVKHGLRALRETLPAEQDLT 311
Query: 724 TKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 831
TKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR
Sbjct: 312 TKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 347
>ref|XP_850510.1| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 263
Score = 467 bits (1202), Expect = e-132
Identities = 233/242 (96%), Positives = 234/242 (96%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
MFRNQYDNDVTVWSPQGRIHQ EYAMEAVKQ SAT+GLKSKTHAVLVALKRAQSELAA Q
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQTEYAMEAVKQDSATLGLKSKTHAVLVALKRAQSELAAQQ 60
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 465
KKILHV NHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT
Sbjct: 61 KKILHVANHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 466 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
QRYGRRPYGVGL IAGYDDMGPHIFQTCPSANYFDCRAMSIGAR QSA TYLERHMS FM
Sbjct: 121 QRYGRRPYGVGLFIAGYDDMGPHIFQTCPSANYFDCRAMSIGARFQSAPTYLERHMSGFM 180
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 240
Query: 826 QR 831
QR
Sbjct: 241 QR 242
>ref|XP_854684.1| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 263
Score = 462 bits (1190), Expect = e-130
Identities = 232/242 (95%), Positives = 233/242 (96%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
MFRNQYDNDVTVWSPQGRIHQ EYAMEAVKQG ATVGLKSKT AVLVALKRAQSELAAHQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQTEYAMEAVKQGPATVGLKSKTIAVLVALKRAQSELAAHQ 60
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 465
KKILHVDNHIGISI GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT
Sbjct: 61 KKILHVDNHIGISIVGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 466 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
QRY RRPYGVGLLIAG DDMGPHIFQTCPSANYFDCRAMSIGA SQSA TYLERH+S FM
Sbjct: 121 QRYVRRPYGVGLLIAGNDDMGPHIFQTCPSANYFDCRAMSIGAHSQSACTYLERHISGFM 180
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 240
Query: 826 QR 831
QR
Sbjct: 241 QR 242
>ref|XP_852713.1| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 323
Score = 453 bits (1166), Expect = e-127
Identities = 229/240 (95%), Positives = 231/240 (96%), Gaps = 1/240 (0%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQS-ELAAHQKK 291
NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQS +LAAHQKK
Sbjct: 63 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSSDLAAHQKK 122
Query: 292 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQR 471
ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV RLVSLIGSKTQIPTQR
Sbjct: 123 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVIRLVSLIGSKTQIPTQR 182
Query: 472 YGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
YG+RPYGVGLLIAGY DMGPHIFQTCPSANYFDCR MSIGARSQSARTYLERHMS FMEC
Sbjct: 183 YGQRPYGVGLLIAGYHDMGPHIFQTCPSANYFDCRTMSIGARSQSARTYLERHMSGFMEC 242
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 831
NLNELVK GLRAL ETLPAEQDLTTKNVSIGIVGKDLE TIYDDDDVS FLEGLEERPQR
Sbjct: 243 NLNELVKRGLRALPETLPAEQDLTTKNVSIGIVGKDLEVTIYDDDDVSLFLEGLEERPQR 302
>ref|XP_855494.1| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 238
Score = 411 bits (1057), Expect = e-115
Identities = 207/217 (95%), Positives = 208/217 (95%)
Frame = +1
Query: 181 MEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLC 360
MEAVKQGSATVGLKSKTH VLVALKRAQSELAAHQKKILHVDNHIGIS+ GLTADARLL
Sbjct: 1 MEAVKQGSATVGLKSKTHTVLVALKRAQSELAAHQKKILHVDNHIGISVVGLTADARLLG 60
Query: 361 NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIF 540
NFM QECLD RFVFDRPL VSRLVSLIGSKTQIPTQ YGRRPYGVGLLIAGYDDMGPHIF
Sbjct: 61 NFMHQECLDFRFVFDRPLSVSRLVSLIGSKTQIPTQWYGRRPYGVGLLIAGYDDMGPHIF 120
Query: 541 QTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDL 720
QTCPSANYFDCRAMSIGARSQSARTYLERHMS FMECNLNELVKHGL ALRETLPAEQDL
Sbjct: 121 QTCPSANYFDCRAMSIGARSQSARTYLERHMSGFMECNLNELVKHGLHALRETLPAEQDL 180
Query: 721 TTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 831
TTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR
Sbjct: 181 TTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 217
>ref|XP_854972.1| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 288
Score = 409 bits (1052), Expect = e-114
Identities = 206/236 (87%), Positives = 210/236 (88%)
Frame = +1
Query: 124 DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHV 303
DND T WSPQGR HQ E M KQGSATVGLKSK HAVLVALKRAQSELAAHQKKILHV
Sbjct: 32 DNDATFWSPQGRTHQSEDVMGTAKQGSATVGLKSKPHAVLVALKRAQSELAAHQKKILHV 91
Query: 304 DNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR 483
DNHIGIS+AGLTA AR LCNFM QECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR
Sbjct: 92 DNHIGISVAGLTAVARPLCNFMHQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR 151
Query: 484 PYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNE 663
PYGVGLLIAGYDD G HI Q CPSANYFDCRAMSIGARSQSARTYLERHMS FMECN+NE
Sbjct: 152 PYGVGLLIAGYDDTGSHILQICPSANYFDCRAMSIGARSQSARTYLERHMSGFMECNMNE 211
Query: 664 LVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 831
LVKHGLRALRETLPAEQDLTTKNVS GIV K+ F D+ DVSPFLEGLEERPQR
Sbjct: 212 LVKHGLRALRETLPAEQDLTTKNVSFGIVAKESGFMTDDEGDVSPFLEGLEERPQR 267
>ref|XP_854784.1| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 175
Score = 298 bits (764), Expect = 4e-81
Identities = 149/155 (96%), Positives = 150/155 (96%)
Frame = +1
Query: 367 MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQT 546
M QECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY RRPYGVGLLIAGYDDMGPHIFQT
Sbjct: 1 MHQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYSRRPYGVGLLIAGYDDMGPHIFQT 60
Query: 547 CPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTT 726
CPSANYFDCRAMSIGARSQSARTYLERHMS FMECNLNELVK GLRALRETLPAEQDLTT
Sbjct: 61 CPSANYFDCRAMSIGARSQSARTYLERHMSGFMECNLNELVKPGLRALRETLPAEQDLTT 120
Query: 727 KNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 831
KNVSIGIVGKDLEFTIY DDDVSPFLEG+EERPQR
Sbjct: 121 KNVSIGIVGKDLEFTIY-DDDVSPFLEGVEERPQR 154
>ref|XP_545709.2| PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome
component C2) (Macropain subunit C2) (Multicatalytic
endopeptidase complex subunit C2) (Proteasome nu chain)
(30 kDa prosomal protein) (PROS-30) [Canis familiaris].
Length = 106
Score = 156 bits (395), Expect = 3e-38
Identities = 80/85 (94%), Positives = 81/85 (95%), Gaps = 1/85 (1%)
Frame = +1
Query: 580 MSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 759
MSIGARSQSARTYLERHMS F ECNLNELVKHGLRAL+ETLPAEQDLT KNVSIGIVGKD
Sbjct: 1 MSIGARSQSARTYLERHMSGFTECNLNELVKHGLRALQETLPAEQDLTAKNVSIGIVGKD 60
Query: 760 LEFTIY-DDDDVSPFLEGLEERPQR 831
LEFTIY DDDDVSPFLEGLEERPQR
Sbjct: 61 LEFTIYDDDDDVSPFLEGLEERPQR 85
>ref|XP_547630.2| PREDICTED: similar to proteasome (prosome, macropain) subunit,
alpha type, 8 isoform 2 [Canis familiaris].
Length = 222
Score = 145 bits (365), Expect = 8e-35
Identities = 80/218 (36%), Positives = 130/218 (59%), Gaps = 3/218 (1%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 288
++YD +TV+SP G + Q+EYA EAVK+GS VG++ VL K++ ++L + +
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTDIVVLGVEKKSVAKLQDERTVR 62
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI +D+H+ ++ AGLTADAR++ N R EC + + P+ V + I + Q TQ
Sbjct: 63 KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
Query: 469 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
GRRP+G+ LI G+DD G P ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 123 SNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 759
N NE +K +RAL E + + KN+ + I+ ++
Sbjct: 183 IANDNEAIKLAIRALLEVVQS----GGKNIELAIIRRN 216
>ref|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha type 2 (Proteasome
component C3) (Macropain subunit C3) (Multicatalytic
endopeptidase complex subunit C3) isoform 1 [Canis
familiaris].
Length = 234
Score = 121 bits (303), Expect = 1e-27
Identities = 71/216 (32%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
M Y +T +SP G++ QIEYA+ AV G+ +VG+K+ VL K+ +S L +
Sbjct: 1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 286 K--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 459
K+ + HIG+ +G+ D R+L + R+ V+ P+P ++LV + S Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 460 PTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 639
TQ G RP+GV LLI G+++ P++FQ+ PS YF +A ++G + +T+LE+ +E
Sbjct: 121 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 640 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGI 747
+E L + + + L+E+ E +T N+ +GI
Sbjct: 181 DLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGI 212
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,169,841
Number of extensions: 855876
Number of successful extensions: 2052
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2026
Number of HSP's successfully gapped: 27
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003118
(1002 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002777.1| proteasome subunit alpha type-1 isoform 2 [Homo... 488 e-138
Alignment gi|NP_683877.1| proteasome subunit alpha type-1 isoform 1 [Homo... 487 e-138
Alignment gi|NP_001137409.1| proteasome subunit alpha type-1 isoform 3 [H... 228 9e-60
Alignment gi|NP_001020267.1| proteasome subunit alpha type-7-like isoform... 141 1e-33
Alignment gi|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens]. 137 2e-32
Alignment gi|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 ... 134 1e-31
Alignment gi|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens]. 121 1e-27
Alignment gi|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo... 121 1e-27
Alignment gi|NP_001020268.1| proteasome subunit alpha type-7-like isoform... 113 2e-25
Alignment gi|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [H... 104 1e-22
>ref|NP_002777.1| proteasome subunit alpha type-1 isoform 2 [Homo sapiens].
Length = 263
Score = 488 bits (1257), Expect = e-138
Identities = 242/242 (100%), Positives = 242/242 (100%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 465
KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT
Sbjct: 61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 466 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM
Sbjct: 121 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 240
Query: 826 QR 831
QR
Sbjct: 241 QR 242
>ref|NP_683877.1| proteasome subunit alpha type-1 isoform 1 [Homo sapiens].
Length = 269
Score = 487 bits (1254), Expect = e-138
Identities = 242/246 (98%), Positives = 243/246 (98%)
Frame = +1
Query: 94 LAGTMFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL 273
L+ FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL
Sbjct: 3 LSKVKFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL 62
Query: 274 AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKT 453
AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKT
Sbjct: 63 AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKT 122
Query: 454 QIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHM 633
QIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHM
Sbjct: 123 QIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHM 182
Query: 634 SEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 813
SEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL
Sbjct: 183 SEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 242
Query: 814 EERPQR 831
EERPQR
Sbjct: 243 EERPQR 248
>ref|NP_001137409.1| proteasome subunit alpha type-1 isoform 3 [Homo sapiens].
Length = 130
Score = 228 bits (580), Expect = 9e-60
Identities = 114/114 (100%), Positives = 114/114 (100%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 447
KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS
Sbjct: 61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGS 114
>ref|NP_001020267.1| proteasome subunit alpha type-7-like isoform 2 [Homo sapiens].
Length = 250
Score = 141 bits (355), Expect = 1e-33
Identities = 78/241 (32%), Positives = 139/241 (57%), Gaps = 3/241 (1%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 288
++YD +TV+SP G + Q+EYA EAVK+GS VG++ VL K++ ++L + +
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI +D+H+ ++ AGLTADAR++ N R EC + + P+ V + I + Q TQ
Sbjct: 63 KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
Query: 469 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
GRRP+G+ LI G+DD G ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 123 SNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
+ +E +K ++AL E + + KN+ + I+ ++ ++ +V ++ +E+
Sbjct: 183 IASDSEAIKLAIKALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEK 238
Query: 826 Q 828
+
Sbjct: 239 E 239
>ref|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens].
Length = 248
Score = 137 bits (344), Expect = 2e-32
Identities = 78/239 (32%), Positives = 137/239 (57%), Gaps = 3/239 (1%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 294
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ ++L + +KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 475 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 828
+ +K ++AL E + + KN+ + ++ +D I + +++ ++ +E+ +
Sbjct: 183 TDDLTIKLVIKALLEVVQS----GGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE 237
>ref|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 [Homo sapiens].
Length = 256
Score = 134 bits (338), Expect = 1e-31
Identities = 78/247 (31%), Positives = 139/247 (56%), Gaps = 9/247 (3%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 288
++YD +TV+SP G + Q+EYA EAVK+GS VG++ VL K++ ++L + +
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
Query: 289 KILHVDNHIGISIA------GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSK 450
KI +D+H+ ++ A GLTADAR++ N R EC + + P+ V + I +
Sbjct: 63 KICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATL 122
Query: 451 TQIPTQRYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLER 627
Q TQ GRRP+G+ LI G+DD G ++QT PS Y +A +IG +++ R +LE+
Sbjct: 123 KQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEK 182
Query: 628 HMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLE 807
+ +E + +E +K ++AL E + + KN+ + I+ ++ ++ +V ++
Sbjct: 183 NYTEDAIASDSEAIKLAIKALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEVELYVT 238
Query: 808 GLEERPQ 828
+E+ +
Sbjct: 239 EIEKEKE 245
>ref|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens].
Length = 234
Score = 121 bits (303), Expect = 1e-27
Identities = 71/216 (32%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
M Y +T +SP G++ QIEYA+ AV G+ +VG+K+ VL K+ +S L +
Sbjct: 1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 286 K--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 459
K+ + HIG+ +G+ D R+L + R+ V+ P+P ++LV + S Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 460 PTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 639
TQ G RP+GV LLI G+++ P++FQ+ PS YF +A ++G + +T+LE+ +E
Sbjct: 121 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 640 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGI 747
+E L + + + L+E+ E +T N+ +GI
Sbjct: 181 DLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGI 212
>ref|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo sapiens].
Length = 241
Score = 121 bits (303), Expect = 1e-27
Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 9/243 (3%)
Frame = +1
Query: 112 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQ 285
R++YD V +SP+GR+ Q+EYA+EA+K GS +G+++ L KR S L +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSLIG 444
+KI+ +D HIG +++GL ADA+ L + R E + F ++ + VS L G
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 445 SKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 624
+ P RP+GV LL G D+ GP +F PS + C A +IG+ S+ A++ L+
Sbjct: 125 EEDADPGAM--SRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 625 RHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 804
+ M L E +K L L++ + E+ L N+ + V F ++ +++ +
Sbjct: 183 EVYHKSM--TLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEELEEVI 238
Query: 805 EGL 813
+ +
Sbjct: 239 KDI 241
>ref|NP_001020268.1| proteasome subunit alpha type-7-like isoform 3 [Homo sapiens].
Length = 212
Score = 113 bits (283), Expect = 2e-25
Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 1/239 (0%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKI 294
++YD +TV+SP G + Q+EYA EAVK+GS VG++
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIR------------------------ 38
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
GLTADAR++ N R EC + + P+ V + I + Q TQ
Sbjct: 39 ------------GLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 86
Query: 475 GRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
GRRP+G+ LI G+DD G ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 87 GRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 146
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 828
+ +E +K ++AL E + + KN+ + I+ ++ ++ +V ++ +E+ +
Sbjct: 147 SDSEAIKLAIKALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKE 201
>ref|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [Homo sapiens].
Length = 261
Score = 104 bits (260), Expect = 1e-22
Identities = 66/218 (30%), Positives = 117/218 (53%), Gaps = 4/218 (1%)
Frame = +1
Query: 118 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH---QK 288
+YD+ T++SP+GR++Q+EYAMEA+ +G+ + +L A +R +L +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI ++ + S+AG+T+DA +L N +R + P+P +LV+ + Q TQ
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 469 RYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
G+RP+GV LL G+D G ++Q+ PS NY +A IG S +A + L++ E
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 759
E L + ++ L +T+ + L+ + V I + ++
Sbjct: 183 EMTLKSALALAIKVLNKTMDVSK-LSAEKVEIATLTRE 219
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,720,915
Number of extensions: 856130
Number of successful extensions: 1863
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 1843
Number of HSP's successfully gapped: 19
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003118
(1002 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus]. 485 e-137
Alignment gi|NP_001157081.1| proteasome subunit alpha type-7-like [Mus mu... 142 4e-34
Alignment gi|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus]. 137 1e-32
Alignment gi|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus]. 121 1e-27
Alignment gi|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus]. 121 1e-27
Alignment gi|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-l... 119 3e-27
Alignment gi|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus]. 104 9e-23
Alignment gi|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus]. 103 2e-22
Alignment gi|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus]. 97 2e-20
>ref|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus].
Length = 263
Score = 485 bits (1249), Expect = e-137
Identities = 240/242 (99%), Positives = 242/242 (100%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 465
KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT
Sbjct: 61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 466 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM
Sbjct: 121 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
ECNL+ELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL+GLEERP
Sbjct: 181 ECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLEERP 240
Query: 826 QR 831
QR
Sbjct: 241 QR 242
>ref|NP_001157081.1| proteasome subunit alpha type-7-like [Mus musculus].
Length = 250
Score = 142 bits (358), Expect = 4e-34
Identities = 78/229 (34%), Positives = 133/229 (58%), Gaps = 3/229 (1%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 288
++YD +TV+SP G + Q+EYA EAVK+GS VG++ VL K++ ++L + +
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVR 62
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI +D+H+ ++ AGLTADAR++ + R EC + + P+ V + I + Q TQ
Sbjct: 63 KICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
Query: 469 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
GRRP+G+ LI G+DD G P ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 123 SNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDV 792
N E +K ++AL E + + KN+ + I+ +D ++ ++
Sbjct: 183 ISNDKEAIKLAIKALLEVVQS----GGKNIELAIIRRDQPLKMFSAKEI 227
>ref|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus].
Length = 248
Score = 137 bits (346), Expect = 1e-32
Identities = 79/239 (33%), Positives = 137/239 (57%), Gaps = 3/239 (1%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 294
YD +TV+SP G + Q+EYA EAVK+GS VG++ K VL K++ ++L + +KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 475 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIE 182
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 828
+ +K ++AL E + + KN+ + ++ +D I + +++ ++ +E+ +
Sbjct: 183 TDDLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYVAEIEKEKE 237
>ref|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus].
Length = 234
Score = 121 bits (303), Expect = 1e-27
Identities = 71/216 (32%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
M Y +T +SP G++ QIEYA+ AV G+ +VG+K+ VL K+ +S L +
Sbjct: 1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 286 K--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQI 459
K+ + HIG+ +G+ D R+L + R+ V+ P+P ++LV + S Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 460 PTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 639
TQ G RP+GV LLI G+++ P++FQ+ PS YF +A ++G + +T+LE+ +E
Sbjct: 121 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 640 FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGI 747
+E L + + + L+E+ E +T N+ +GI
Sbjct: 181 DLE--LEDAIHTAILTLKESF--EGQMTEDNIEVGI 212
>ref|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].
Length = 241
Score = 121 bits (303), Expect = 1e-27
Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 9/243 (3%)
Frame = +1
Query: 112 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQ 285
R++YD V +SP+GR+ Q+EYA+EA+K GS +G+++ L KR S L +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSLIG 444
+KI+ +D HIG +++GL ADA+ L + R E + F ++ + VS L G
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 445 SKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 624
+ P RP+GV LL G D+ GP +F PS + C A +IG+ S+ A++ L+
Sbjct: 125 EEDADPGAM--SRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 625 RHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 804
+ M L E +K L L++ + E+ L N+ + V F ++ +++ +
Sbjct: 183 EVYHKSM--TLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEELEEVI 238
Query: 805 EGL 813
+ +
Sbjct: 239 KDI 241
>ref|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-like [Mus musculus].
Length = 241
Score = 119 bits (299), Expect = 3e-27
Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 9/243 (3%)
Frame = +1
Query: 112 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQ 285
R++Y+ V +SP+GR+ Q+EYA+EA+K GS +G+++ L KR S L +
Sbjct: 5 RSEYNRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSLIG 444
+KI+ +D HIG +++GL ADA+ L + R E + F ++ + VS L G
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 445 SKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 624
+ P RP+GV LL G D+ GP +F PS + C A +IG+ S+ A++ L+
Sbjct: 125 EEDADPGAM--SRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 625 RHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 804
+ M L E +K L ++ + E+ L T N+ + V F ++ +++ +
Sbjct: 183 EVYHKSM--TLKEAIKSSLIIFKQVM--EEKLNTTNIELATVQPGQNFHMFTKEELEEVI 238
Query: 805 EGL 813
+ +
Sbjct: 239 KDI 241
>ref|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus].
Length = 261
Score = 104 bits (260), Expect = 9e-23
Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%)
Frame = +1
Query: 118 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH---QK 288
+YD+ T++SP+GR++Q+EYAMEA+ +G+ + +L A +R +L +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI ++ + S+AG+T+DA +L N +R + P+P +LV+ + Q TQ
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 469 RYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
G+RP+GV LL G+D G ++Q+ PS NY +A IG S +A + L++ E
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 774
E L + ++ L +T+ + L+ + V I + ++ T+
Sbjct: 183 EMTLKSALALAVKVLNKTMDVSK-LSAEKVEIATLTRESGKTV 224
>ref|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus].
Length = 246
Score = 103 bits (258), Expect = 2e-22
Identities = 62/239 (25%), Positives = 121/239 (50%), Gaps = 5/239 (2%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSEL--AAHQKK 291
+D +T++SP+GR++Q+EYA +A+ QG T V ++ K AV+V K+ +L ++
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 292 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQR 471
+ + IG + G+TAD+R R E + ++ + +PV L I +Q+ TQ
Sbjct: 69 LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 472 YGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 648
RP G +++ G D + GP +++ P+ Y +A + G + + ++LE+ + + +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 649 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG-KDLEFTIYDDDDVSPFLEGLEER 822
+ V+ + L L D + +G+V ++ +F I + ++ L L ER
Sbjct: 189 WTFEQTVETAITCLSTVLSI--DFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAER 245
>ref|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus].
Length = 255
Score = 97.1 bits (240), Expect = 2e-20
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 3/180 (1%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKI 294
YD + +SP GR+ Q+EYAM+AV+ S +G++ K V K S+L K++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+VD H+G+++AGL ADAR L + R+E + R F +P+ L + T
Sbjct: 68 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127
Query: 475 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
RP+G ++ Y + G ++ PS + +IG Q+A+T +E+ + M C
Sbjct: 128 AVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTC 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,658,887
Number of extensions: 738832
Number of successful extensions: 1669
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1656
Number of HSP's successfully gapped: 9
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003118
(1002 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-l... 488 e-138
Alignment gi|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-l... 144 8e-35
Alignment gi|NP_001230581.1| proteasome (prosome, macropain) subunit, alp... 135 3e-32
Alignment gi|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa]. 121 7e-28
Alignment gi|XP_003127921.1| PREDICTED: proteasome subunit alpha type-7-l... 117 1e-26
Alignment gi|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-l... 110 1e-24
Alignment gi|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa]. 104 9e-23
Alignment gi|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 i... 97 1e-20
Alignment gi|XP_001928042.1| PREDICTED: proteasome subunit alpha type-3 i... 91 8e-19
Alignment gi|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 i... 76 3e-14
>ref|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-like [Sus scrofa].
Length = 263
Score = 488 bits (1257), Expect = e-138
Identities = 242/242 (100%), Positives = 242/242 (100%)
Frame = +1
Query: 106 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 285
MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 465
KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT
Sbjct: 61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 466 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM
Sbjct: 121 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 240
Query: 826 QR 831
QR
Sbjct: 241 QR 242
>ref|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-like isoform 1 [Sus
scrofa].
Length = 250
Score = 144 bits (363), Expect = 8e-35
Identities = 80/241 (33%), Positives = 138/241 (57%), Gaps = 3/241 (1%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--K 288
++YD +TV+SP G + Q+EYA EAVK+GS V ++ VL K++ ++L + +
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIRGTDIVVLGVEKKSVAKLQDERTVR 62
Query: 289 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 468
KI +D+H+ ++ AGLTADAR++ N R EC + + P+ V + I + Q TQ
Sbjct: 63 KICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQ 122
Query: 469 RYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 645
GRRP+G+ LI G+DD G P ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 123 SNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDA 182
Query: 646 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP 825
N NE +K +RAL E + + KN+ + I+ ++ ++ ++ + +E+
Sbjct: 183 IANDNEAIKLAIRALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEIELQVNEIEKEK 238
Query: 826 Q 828
+
Sbjct: 239 E 239
>ref|NP_001230581.1| proteasome (prosome, macropain) subunit, alpha type [Sus scrofa].
Length = 248
Score = 135 bits (341), Expect = 3e-32
Identities = 78/239 (32%), Positives = 135/239 (56%), Gaps = 3/239 (1%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKI 294
YD +TV+SP G + Q+EYA EAVK+GS VG++ + VL K++ + L + +KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTVRKI 62
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+D+++ ++ AGLTADAR++ N R EC R + P+ V + I S Q TQ
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 475 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
GRRP+G+ LI G+D D P ++QT PS Y +A +IG ++S R +LE++ ++
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 828
+K ++AL E + + KN+ + ++ +D I + +++ ++ +E+ +
Sbjct: 183 TDGLTIKLVIKALLEVVQS----GGKNIELAVMRRDQPLKILNPEEIEKYVAEIEKEKE 237
>ref|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa].
Length = 241
Score = 121 bits (303), Expect = 7e-28
Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 9/243 (3%)
Frame = +1
Query: 112 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQ 285
R++YD V +SP+GR+ Q+EYA+EA+K GS +G+++ L KR S L +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSLIG 444
+KI+ +D HIG +++GL ADA+ L + R E + F ++ + VS L G
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 445 SKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 624
+ P RP+GV LL G D+ GP +F PS + C A +IG+ S+ A++ L+
Sbjct: 125 EEDADPGAM--SRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 625 RHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 804
+ M L E +K L L++ + E+ L N+ + V F ++ +++ +
Sbjct: 183 EVYHKSM--TLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEELEEVI 238
Query: 805 EGL 813
+ +
Sbjct: 239 KDI 241
>ref|XP_003127921.1| PREDICTED: proteasome subunit alpha type-7-like isoform 2 [Sus
scrofa].
Length = 212
Score = 117 bits (292), Expect = 1e-26
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 1/239 (0%)
Frame = +1
Query: 115 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKI 294
++YD +TV+SP G + Q+EYA EAVK+GS V ++
Sbjct: 3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIR------------------------ 38
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
GLTADAR++ N R EC + + P+ V + I + Q TQ
Sbjct: 39 ------------GLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSN 86
Query: 475 GRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
GRRP+G+ LI G+DD G P ++QT PS Y +A +IG +++ R +LE++ +E
Sbjct: 87 GRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIA 146
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 828
N NE +K +RAL E + + KN+ + I+ ++ ++ ++ + +E+ +
Sbjct: 147 NDNEAIKLAIRALLEVVQS----GGKNIELAIIRRNQPLKMFSAKEIELQVNEIEKEKE 201
>ref|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-like [Sus scrofa].
Length = 188
Score = 110 bits (275), Expect = 1e-24
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Frame = +1
Query: 112 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQ 285
R++YD V +SP+GR+ Q+EYA+EA+K GS +G+++ L KR S L +
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 286 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSLIG 444
+KI+ +D HIG +++GL ADA+ L + R E + F ++ + VS L G
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 445 SKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 624
+ P RP+GV LL G D+ GP +F PS + C A +IG+ S+ A++ L+
Sbjct: 125 EEDADPGAM--SRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
>ref|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa].
Length = 246
Score = 104 bits (259), Expect = 9e-23
Identities = 62/238 (26%), Positives = 122/238 (51%), Gaps = 5/238 (2%)
Frame = +1
Query: 124 DNDVTVWSPQGRIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSEL--AAHQKKI 294
D +T++SP+GR++Q+EYA +A+ QG T V ++ K AV+V K+ +L ++ +
Sbjct: 10 DRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHL 69
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+ +IG + G+TAD+R R E + ++ + +PV L I +Q+ TQ
Sbjct: 70 FKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA 129
Query: 475 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
RP G +++ G D + GP +++ P+ Y +A + G + + ++LE+ + + +
Sbjct: 130 EMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDW 189
Query: 652 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG-KDLEFTIYDDDDVSPFLEGLEER 822
+ V+ + L L D + +G+V ++ +F I+ + ++ L L ER
Sbjct: 190 TFEQTVETAITCLFTVLSI--DFKPSEIEVGVVTVENPKFRIFTEAEIDAHLVALAER 245
>ref|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 isoform 1 [Sus scrofa].
Length = 255
Score = 97.1 bits (240), Expect = 1e-20
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 3/180 (1%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKI 294
YD + +SP GR+ Q+EYAM+AV+ S +G++ K V K S+L K++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+VD H+G+++AGL ADAR L + R+E + R F +P+ L + T
Sbjct: 68 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127
Query: 475 GRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
RP+G ++ Y + G ++ PS + +IG Q+A+T +E+ + M C
Sbjct: 128 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTC 187
>ref|XP_001928042.1| PREDICTED: proteasome subunit alpha type-3 isoform 2 [Sus scrofa].
Length = 248
Score = 91.3 bits (225), Expect = 8e-19
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 2/179 (1%)
Frame = +1
Query: 121 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKI 294
YD + +SP GR+ Q+EYAM+AV+ S +G++ K V K S+L K++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67
Query: 295 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 474
+VD H+G+++AGL ADAR L + R+E + R F +P+ L + T
Sbjct: 68 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127
Query: 475 GRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 651
RP+G + + G ++ PS + +IG Q+A+T +E+ + M C
Sbjct: 128 AVRPFGCSV------NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTC 180
>ref|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 isoform 2 [Sus scrofa].
Length = 237
Score = 76.3 bits (186), Expect = 3e-14
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 4/197 (2%)
Frame = +1
Query: 181 MEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH---QKKILHVDNHIGISIAGLTADAR 351
MEA+ +G+ + +L A +R +L +KI ++ + S+AG+T+DA
Sbjct: 1 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 60
Query: 352 LLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMG 528
+L N +R + P+P +LV+ + Q TQ G+RP+GV LL G+D G
Sbjct: 61 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 120
Query: 529 PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPA 708
++Q+ PS NY +A IG S +A + L++ E E L + ++ L +T+
Sbjct: 121 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDV 179
Query: 709 EQDLTTKNVSIGIVGKD 759
+ L+ + V I + ++
Sbjct: 180 SK-LSAEKVEIATLTRE 195
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,176,895
Number of extensions: 526089
Number of successful extensions: 1203
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1190
Number of HSP's successfully gapped: 15
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003118
(1002 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895974.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 331 4e-88
Sscrofa_Chr08 315 3e-83
Sscrofa_Chr02 289 1e-75
Sscrofa_ChrX 64 2e-07
>gb|GL895974.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4486
Length = 60521
Score = 331 bits (167), Expect = 4e-88
Identities = 540/661 (81%), Gaps = 33/661 (4%)
Strand = Plus / Plus
Query: 232 catgcagtgctggttgcattgaagagggcacaatcagaacttgcagctcatcagnnnnnn 291
|||||||||||||| ||||||||| ||| || |||| |||||||||| ||||
Sbjct: 14395 catgcagtgctggtggcattgaag--ggcgcagtcagcgcttgcagctcctcagaaaaga 14452
Query: 292 ntcctccatgttgataaccatatcggtatctcaattgcgggacttactgccgatgctaga 351
| |||||||| |||||||| |||| | |||| ||||||||| |||||| |||||||||
Sbjct: 14453 gttctccatgtcgataaccacatcgacacctcagttgcgggacgtactgctgatgctaga 14512
Query: 352 ctgttatgtaattttatgcgtcaggagtgtttggattccagatttgtatttgacagacct 411
|||| | |||||| |||||||||||||||||||| |||||| ||||||| || |||||||
Sbjct: 14513 ctgtcaggtaattgtatgcgtcaggagtgtttgggttccaggtttgtatctggcagacct 14572
Query: 412 ctgcctgtgtctcgtcttgtatctctaattggaagcaaaacccagataccaacgcaacga 471
||| ||||||||||||| || ||| |||||||||||||||||||| |||| || ||||
Sbjct: 14573 ctg-ctgtgtctcgtctcgtgcctc--attggaagcaaaacccagatcccaatgcgacga 14629
Query: 472 tatggccggagaccgtatggtgttgggctacttattgctggttatgatgatatgggccct 531
||||||| |||||| ||||| || ||| ||||| ||||||||||||||| |||| |||
Sbjct: 14630 cgtggccggggaccgtgtggtgctgcgctgcttatcgctggttatgatgatgtggg-cct 14688
Query: 532 cacattttccagacttgtccatctgctaactatttcgactgcagagccatgtccattgga 591
|||||||| || |||||||||| |||| |||||||| ||||||||| |||||||||||
Sbjct: 14689 cacatttt-caaacttgtccatttgctgactatttcagctgcagagctgtgtccattgga 14747
Query: 592 gctcgttctcaatcagctcgtacttacttggagagacatatgtcggagtttatggaatgc 651
||| |||||||||| | | || |||||| |||||||| || || | || || ||||| ||
Sbjct: 14748 gcttgttctcaatccgtttgtgcttactcggagagacgtacgttgaaggttgtggaacgc 14807
Query: 652 aatttgaatgaactggttaagcatggtttgcgagccttacgagagaccctgcctgcagaa 711
| ||||||||||||||||||||| ||| || ||| ||||||
Sbjct: 14808 actttgaatgaactggttaagcacggtctg-------------------tgc--gcagaa 14846
Query: 712 caggacctaactacaaagaatgtttccattggaattgtcggtaaagacttagagtttacg 771
||||||||||||||||||| ||||||||||| |||| ||| ||||||| | |||| ||
Sbjct: 14847 caggacctaactacaaagaccttttccattggagttgttggtgaagacttcgggtttgcg 14906
Query: 772 atttatgacgatgatgatgtgtctccattcctggaaggtcttgaagaaagaccacagaga 831
| | |||| ||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct: 14907 a---gtcacgacgatgatgtgtctccactcctggaaggtcttgacgaaagaccacag-gg 14962
Query: 832 aaggcacagcctgctcaacctgctgatgaacctgcagaaaaggctgatgaaccaatggaa 891
||||| | ||||||||| ||| ||||||| ||||||||||| |||||||||||| |||||
Sbjct: 14963 aaggcgcggcctgctcagcctactgatgagcctgcagaaaa-gctgatgaaccagtggaa 15021
Query: 892 c 892
|
Sbjct: 15022 c 15022
Score = 125 bits (63), Expect = 5e-26
Identities = 122/141 (86%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 66 caggtttaccggaggccgtgactaggctctcgccggaaccatgtttcgcaaccagtatga 125
|||||||||| ||||||||| |||||| || |||||| |||||||||||||||||||
Sbjct: 14151 caggtttaccagaggccgtgctcgggctctggctggaaccgtgtttcgcaaccagtatga 14210
Query: 126 caatgatgtcactgtttggagccctcagggcaggattcatcaaattgaatatgcaatgga 185
||||||||||||||||||||||||||||||| || ||| |||||| |||| ||||
Sbjct: 14211 caatgatgtcactgtttggagccctcagggccacat---tcaggttgaatgtgcagtgga 14267
Query: 186 agccgtcaaacaaggttcagc 206
||| |||||||||||||||||
Sbjct: 14268 agctgtcaaacaaggttcagc 14288
>Sscrofa_Chr08
|| Length = 148491826
Score = 315 bits (159), Expect = 3e-83
Identities = 203/217 (93%), Gaps = 3/217 (1%)
Strand = Plus / Plus
Query: 764 agtttacgatttatgacgatgatgatgtgtctccattcctggaaggtcttgaagaaagac 823
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 54075743 agtttacaatttatgacgatg---atgtgtctccattcctggaaggacttgaagaaagac 54075799
Query: 824 cacagagaaaggcacagcctgctcaacctgctgatgaacctgcagaaaaggctgatgaac 883
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 54075800 cacagagaaaggcacagcctgctcaacctgctaatgaacctgtagaaaaggctgatgaac 54075859
Query: 884 caatggaacattaaatgatagaccagtctgtatgtgtattaccaaacatgtaagaatgca 943
|||||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 54075860 caatggaattttaaatgatataccagtctatatgtgtattaccaaacatgtaaaaatgca 54075919
Query: 944 aaaacacgatactgatgacaataatctatactttgaa 980
| ||||| |||||||||||||||||||||||||||||
Sbjct: 54075920 agaacacaatactgatgacaataatctatactttgaa 54075956
>Sscrofa_Chr02
|| Length = 162569375
Score = 289 bits (146), Expect = 1e-75
Identities = 159/162 (98%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 839 agcctgctcaacctgctgatgaacctgcagaaaaggctgatgaaccaatggaacattaaa 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47980831 agcctgctcaacctgctgatgaacctgcagaaaaggctgatgaaccaatggaacattaaa 47980890
Query: 899 tgatagaccagtctgtatgtgtattaccaaacatgtaagaatgcaaaaacacgatactga 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47980891 tgatagaccagtctgtatgtgtattaccaaacatgtaagaatgcaaaaacacgatactga 47980950
Query: 959 tgacaataatctatactttgaaaccaaaga-acagaatgggg 999
|||||||||||||||||||||| | ||||| |||||||||||
Sbjct: 47980951 tgacaataatctatactttgaaccaaaagatacagaatgggg 47980992
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 520 gatatgggccctcacattttccagacttgtccatctgctaactatttcgactgcagagcc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47974466 gatatgggccctcacattttccagacttgtccatctgctaactatttcgactgcagagcc 47974525
Query: 580 atgtccattggagctcgttctcaatcagctcgtacttacttggagagacatatgtcggag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47974526 atgtccattggagctcgttctcaatcagctcgtacttacttggagagacatatgtcggag 47974585
Query: 640 tttatggaatg 650
|||||||||||
Sbjct: 47974586 tttatggaatg 47974596
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 728 agaatgtttccattggaattgtcggtaaagacttagagtttacgatttatgacgatgatg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47979440 agaatgtttccattggaattgtcggtaaagacttagagtttacgatttatgacgatgatg 47979499
Query: 788 atgtgtctccattcctggaaggtcttgaagaaagaccacagagaaaggcacag 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47979500 atgtgtctccattcctggaaggtcttgaagaaagaccacagagaaaggcacag 47979552
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 4 atagtcccgcagacttctctgcagatcgccgagcggtagtttcggcagcgctccttgatc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47966037 atagtcccgcagacttctctgcagatcgccgagcggtagtttcggcagcgctccttgatc 47966096
Query: 64 tgcaggtttaccggaggccgtgactaggctctcgccggaaccatg 108
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47966097 tgcaggtttaccggaggccgtgactaggctctcgccggaaccatg 47966141
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 152 agggcaggattcatcaaattgaatatgcaatggaagccgtcaaacaaggttcagcaacag 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47968525 agggcaggattcatcaaattgaatatgcaatggaagccgtcaaacaaggttcagcaacag 47968584
Query: 212 ttggtctgaaatcaaaaacccatgcagtgctggttgcattgaag 255
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47968585 ttggtctgaaatcaaaaacccatgcagtgctggttgcattgaag 47968628
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 359 gtaattttatgcgtcaggagtgtttggattccagatttgtatttgacagacctctgcctg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47973023 gtaattttatgcgtcaggagtgtttggattccagatttgtatttgacagacctctgcctg 47973082
Query: 419 tgtctcgtcttgtatctctaattggaagca 448
||||||||||||||||||||||||||||||
Sbjct: 47973083 tgtctcgtcttgtatctctaattggaagca 47973112
Score = 168 bits (85), Expect = 4e-39
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 254 agagggcacaatcagaacttgcagctcatcagnnnnnnntcctccatgttgataaccata 313
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 47969013 agagggcacaatcagaacttgcagctcatcagaaaaaaatcctccatgttgataaccata 47969072
Query: 314 tcggtatctcaattgcgggacttactgccgatgctagactgttatg 359
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47969073 tcggtatctcaattgcgggacttactgccgatgctagactgttatg 47969118
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 650 gcaatttgaatgaactggttaagcatggtttgcgagccttacgagagaccctgcctgcag 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47975894 gcaatttgaatgaactggttaagcatggtttgcgagccttacgagagaccctgcctgcag 47975953
Query: 710 aacaggacctaactacaaag 729
||||||||||||||||||||
Sbjct: 47975954 aacaggacctaactacaaag 47975973
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 449 aaacccagataccaacgcaacgatatggccggagaccgtatggtgttgggctacttattg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47974288 aaacccagataccaacgcaacgatatggccggagaccgtatggtgttgggctacttattg 47974347
Query: 509 ctggttatgatg 520
||||||||||||
Sbjct: 47974348 ctggttatgatg 47974359
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 108 gtttcgcaaccagtatgacaatgatgtcactgtttggagccctcagg 154
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47967922 gtttcgcaaccagtatgacaatgatgtcactgtttggagccctcagg 47967968
>Sscrofa_ChrX
|| Length = 144288218
Score = 63.9 bits (32), Expect = 2e-07
Identities = 70/82 (85%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 120 gtatgacaatgatgtcactgtttggagccctcagggcaggattcatcaaatt---gaata 176
|||||| |||||||||||||||| |||||||||||| |||||| ||||| | |||||
Sbjct: 82130066 gtatgaaaatgatgtcactgtttagagccctcagggaaggatttgtcaaagtgaagaata 82130125
Query: 177 tgcaatggaagccgtcaaacaa 198
|| |||||||| |||||||||
Sbjct: 82130126 tgaaatggaagttgtcaaacaa 82130147
Score = 61.9 bits (31), Expect = 6e-07
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 716 acctaactacaaagaatgtttccattggaattgtcggtaaagacttagagtttacgattt 775
|||||||||||||||||||||||| || |||||| ||||| || || || ||| ||| |
Sbjct: 82130567 acctaactacaaagaatgtttccactgaaattgttggtaagtacctacagcttatgatct 82130626
Query: 776 atgacgatgatgatgtgtc 794
|||| |||||| |||||||
Sbjct: 82130627 atgaggatgataatgtgtc 82130645
Score = 58.0 bits (29), Expect = 1e-05
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 316 ggtatctcaattgcgggacttactgccgatgctagactgttatgtaattttatgcgtcag 375
||||||||| ||| || ||| |||| ||||||||| |||||||||||||||||| |||
Sbjct: 82130243 ggtatctcagttgttgggcttcctgctgatgctagattgttatgtaattttatgcaccag 82130302
Query: 376 gagtgtttggattccagattt 396
|| | ||| |||| |||||||
Sbjct: 82130303 gaatatttcgatttcagattt 82130323
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,119,094
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 17
Length of query: 1002
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 981
Effective length of database: 2,808,413,156
Effective search space: 2755053306036
Effective search space used: 2755053306036
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)