Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003120
(961 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068609.1| V-type proton ATPase subunit D [Bos taurus]. 332 2e-91
>ref|NP_001068609.1| V-type proton ATPase subunit D [Bos taurus].
Length = 200
Score = 332 bits (852), Expect = 2e-91
Identities = 174/174 (100%), Positives = 174/174 (100%)
Frame = +3
Query: 81 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 260
MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 261 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 440
VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
Sbjct: 61 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 441 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEH 602
LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEH
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEH 174
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,195,077
Number of extensions: 643748
Number of successful extensions: 2300
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2285
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 218
Effective length of database: 14,306,398
Effective search space: 3118794764
Effective search space used: 3118794764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003120
(961 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537484.1| PREDICTED: similar to Vacuolar ATP synthase sub... 400 e-111
Alignment gi|XP_866728.1| PREDICTED: similar to ATPase, H+ transporting, ... 295 2e-85
Alignment gi|XP_866742.1| PREDICTED: similar to ATPase, H+ transporting, ... 297 9e-81
Alignment gi|XP_866714.1| PREDICTED: similar to ATPase, H+ transporting, ... 152 6e-37
Alignment gi|XP_543230.2| PREDICTED: similar to Vacuolar ATP synthase sub... 109 4e-24
>ref|XP_537484.1| PREDICTED: similar to Vacuolar ATP synthase subunit D (V-ATPase D
subunit) (Vacuolar proton pump D subunit) (V-ATPase 28
kDa accessory protein) isoform 1 [Canis familiaris].
Length = 247
Score = 400 bits (1027), Expect = e-111
Identities = 213/234 (91%), Positives = 213/234 (91%)
Frame = +3
Query: 81 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 260
MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 261 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 440
VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
Sbjct: 61 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 441 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 620
LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 180
Query: 621 ERTLAYIITELDEREREEFYRXXXXXXXXXXXXXXXXXXXXQRRAAGEAMEPAN 782
ERTLAYIITELDEREREEFYR QRRAAGE MEPAN
Sbjct: 181 ERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVMEPAN 234
>ref|XP_866728.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal 34kDa, V1
subunit D isoform 3 [Canis familiaris].
Length = 179
Score = 295 bits (755), Expect(2) = 2e-85
Identities = 154/155 (99%), Positives = 155/155 (100%)
Frame = +3
Query: 81 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 260
MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 261 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 440
VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
Sbjct: 61 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 441 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSF 545
LTGLARGGEQLAKLKRNYAKAVELLVELASLQ+SF
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQSSF 155
Score = 40.0 bits (92), Expect(2) = 2e-85
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +1
Query: 604 SSFLGLNAPLLISSQSWMRESE 669
SSF G N PLLISSQSWMRESE
Sbjct: 153 SSFPGSNVPLLISSQSWMRESE 174
>ref|XP_866742.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal 34kDa, V1
subunit D isoform 4 [Canis familiaris].
Length = 192
Score = 297 bits (761), Expect = 9e-81
Identities = 158/179 (88%), Positives = 158/179 (88%)
Frame = +3
Query: 246 MLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEG 425
MLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEG
Sbjct: 1 MLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEG 60
Query: 426 TDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHV 605
TDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHV
Sbjct: 61 TDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHV 120
Query: 606 IIPRIERTLAYIITELDEREREEFYRXXXXXXXXXXXXXXXXXXXXQRRAAGEAMEPAN 782
IIPRIERTLAYIITELDEREREEFYR QRRAAGE MEPAN
Sbjct: 121 IIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVMEPAN 179
>ref|XP_866714.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal 34kDa, V1
subunit D isoform 2 [Canis familiaris].
Length = 86
Score = 152 bits (383), Expect = 6e-37
Identities = 79/79 (100%), Positives = 79/79 (100%)
Frame = +3
Query: 81 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 260
MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 261 VMREAAFSLAEAKFTAGDF 317
VMREAAFSLAEAKFTAGDF
Sbjct: 61 VMREAAFSLAEAKFTAGDF 79
>ref|XP_543230.2| PREDICTED: similar to Vacuolar ATP synthase subunit D (V-ATPase D
subunit) (Vacuolar proton pump D subunit) (V-ATPase 28
kDa accessory protein) [Canis familiaris].
Length = 148
Score = 109 bits (272), Expect = 4e-24
Identities = 68/139 (48%), Positives = 83/139 (59%)
Frame = +3
Query: 366 AKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSF 545
+ K++ AG LPVFEH+ +G+DS +LTGLARGG+ ++LKRN A V +A LQT F
Sbjct: 6 SSKEDAAGDPLPVFEHHRQGSDSDKLTGLARGGDNASELKRNNVTA----VGVALLQTPF 61
Query: 546 VTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRXXXXXXXXXXXXXX 725
VT DEA+ N VNA EHVIIPRI LA IITE + RER FYR
Sbjct: 62 VTGDEAV---NGSVNATEHVIIPRIGCALACIITEFNVRER-NFYRLKKIQKKKKILQEK 117
Query: 726 XXXXXXQRRAAGEAMEPAN 782
Q++ AGE MEP N
Sbjct: 118 SEQDVAQQKVAGEGMEPTN 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,513,027
Number of extensions: 666621
Number of successful extensions: 2257
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2237
Number of HSP's successfully gapped: 6
Length of query: 320
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 217
Effective length of database: 15,440,896
Effective search space: 3350674432
Effective search space used: 3350674432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003120
(961 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057078.1| V-type proton ATPase subunit D [Homo sapiens]. 399 e-111
>ref|NP_057078.1| V-type proton ATPase subunit D [Homo sapiens].
Length = 247
Score = 399 bits (1024), Expect = e-111
Identities = 212/234 (90%), Positives = 213/234 (91%)
Frame = +3
Query: 81 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 260
MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 261 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 440
VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
Sbjct: 61 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 441 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 620
LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 180
Query: 621 ERTLAYIITELDEREREEFYRXXXXXXXXXXXXXXXXXXXXQRRAAGEAMEPAN 782
ERTLAYIITELDEREREEFYR QRRAAGE +EPAN
Sbjct: 181 ERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEVLEPAN 234
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,022,838
Number of extensions: 659496
Number of successful extensions: 2148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2126
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 217
Effective length of database: 14,901,872
Effective search space: 3233706224
Effective search space used: 3233706224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003120
(961 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076210.1| V-type proton ATPase subunit D [Mus musculus]. 398 e-111
>ref|NP_076210.1| V-type proton ATPase subunit D [Mus musculus].
Length = 247
Score = 398 bits (1023), Expect = e-111
Identities = 212/234 (90%), Positives = 213/234 (91%)
Frame = +3
Query: 81 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 260
MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 261 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 440
VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
Sbjct: 61 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 441 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 620
LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 180
Query: 621 ERTLAYIITELDEREREEFYRXXXXXXXXXXXXXXXXXXXXQRRAAGEAMEPAN 782
ERTLAYIITELDEREREEFYR +RRAAGE MEPAN
Sbjct: 181 ERTLAYIITELDEREREEFYRLKKIQEKKKIIKEKFEKDLERRRAAGEVMEPAN 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,620,569
Number of extensions: 560058
Number of successful extensions: 1998
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1936
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 219
Effective length of database: 12,583,923
Effective search space: 2755879137
Effective search space used: 2755879137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003120
(961 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928349.1| PREDICTED: v-type proton ATPase subunit D [S... 401 e-112
>ref|XP_001928349.1| PREDICTED: v-type proton ATPase subunit D [Sus scrofa].
Length = 247
Score = 401 bits (1031), Expect = e-112
Identities = 214/234 (91%), Positives = 214/234 (91%)
Frame = +3
Query: 81 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 260
MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE
Sbjct: 1 MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGE 60
Query: 261 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 440
VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE
Sbjct: 61 VMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYE 120
Query: 441 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 620
LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI
Sbjct: 121 LTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRI 180
Query: 621 ERTLAYIITELDEREREEFYRXXXXXXXXXXXXXXXXXXXXQRRAAGEAMEPAN 782
ERTLAYIITELDEREREEFYR QRRAAGEAMEPAN
Sbjct: 181 ERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEAMEPAN 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,743,963
Number of extensions: 413093
Number of successful extensions: 1432
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1416
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,879,129
Effective search space: 1962287509
Effective search space used: 1962287509
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003120
(961 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 706 0.0
Sscrofa_Chr07 539 e-151
Sscrofa_Chr03 289 1e-75
>Sscrofa_Chr13
|| Length = 218635234
Score = 706 bits (356), Expect = 0.0
Identities = 608/682 (89%), Gaps = 15/682 (2%)
Strand = Plus / Plus
Query: 78 agaatgtcgggcaaagaccgaattgaaatctttccctcgcgaatggcacagaccatcatg 137
|||||||||||||||||| ||||||||||||||| || | |||||||||||| |||||||
Sbjct: 193086138 agaatgtcgggcaaagactgaattgaaatctttctcttgagaatggcacagatcatcatg 193086197
Query: 138 aaggctcggttaaaaggagcacaaacaggtcgaaacctcctgaagaaaaaa-tctgatgc 196
|| |||| ||||||||||||| | |||||| ||| ||| |||||||||| ||||||||
Sbjct: 193086198 aaagctcagttaaaaggagcaga--caggtcaaaagctcg-gaagaaaaaactctgatgc 193086254
Query: 197 cttaactcttcgatttcgacagatccttaagaagataatagagactaaaatgttgatggg 256
|||||| ||| |||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct: 193086255 cttaaccctttgatttccactgatccttaagaagataatagagactaaaatgctgatggg 193086314
Query: 257 tgaagtgatgagagaagctgctttttcacttgccgaggccaagttcacagcaggggactt 316
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 193086315 tgaagtgatgagagaagctgctttttcacttgctgaggccaagttcacagca-gggactt 193086373
Query: 317 cagcaccacagttatccaaaacgtaaataaagcccaagtgaagattagagcaaagaaaga 376
|| |||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||
Sbjct: 193086374 caacaccacagttatccaagatataaataaagcccaaatgaagattagagcaaag-aaga 193086432
Query: 377 taatgtagcaggtgttactttgccagtatttgaacattatcatgaaggaaccgacagtta 436
||| ||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 193086433 taacatagca-gtgttaccttgccagtatttgaacataatcatgaaggaactgacagtta 193086491
Query: 437 tgagctgactggtttagccagaggtggggaacagttggctaaactgaagaggaattatgc 496
| ||||||||| |||||||| |||||| |||||||||||||||||||||| | |||||||
Sbjct: 193086492 ttagctgactgctttagccaaaggtggcgaacagttggctaaactgaagaaggattatgc 193086551
Query: 497 caaagcagtggaactgctggtggaactagcttcgctgcagacttcctttgttactttgga 556
||||||||| |||| || ||||| || || |||||||||| ||||||||||||||
Sbjct: 193086552 caaagcagtaaaactagcggaggaaccagatttgctgcagact---tttgttactttgga 193086608
Query: 557 tgaagctattaagataaccaacaggcgtgtaaatgccattgaacatgtcatcattcctcg 616
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 193086609 tgaagctattaagataaccaacaggtgtgtaaatgtcattgaacatgtcatcattcccca 193086668
Query: 617 gattgaacgcacccttgcttatatcatcacagagctggatgagagagagcgagaagagtt 676
||||||| ||||||| | ||||| | |||||| | ||||| ||||||||||||||||
Sbjct: 193086669 gattgaatgcaccctcgattatagcgtcacagggttggat----gagagcgagaagagtt 193086724
Query: 677 ctataggttaaagaaaatacaagagaagaaaaagattctcaaggaaaagtctgagaaaga 736
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct: 193086725 ctataggttaaagaaaatacaagagaagaaaaagattctcagggaaaa-tctgagaagaa 193086783
Query: 737 cttggaacaacgaagggcagct 758
|||||| ||||| | |||||||
Sbjct: 193086784 cttggagcaacggaaggcagct 193086805
Score = 147 bits (74), Expect = 1e-32
Identities = 157/182 (86%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 771 gagcctgctaatcttctggctgaggagaaggatgaggatcttctgtttgaataatctttc 830
|||||||||||| | |||||||| ||||| ||| ||||| |||||||||||||| |||||
Sbjct: 193087082 gagcctgctaatat-ctggctgaagagaaagataaggattttctgtttgaataagctttc 193087140
Query: 831 cttctctggttctttcagaaggcctaacatggcaccattataattcacggtgtgtagatt 890
||||| |||||||||||| ||||||| ||||| ||||| ||||||| ||||||||| ||
Sbjct: 193087141 cttctttggttctttcagcaggcctatgatggctccattttaattcatggtgtgtaggtt 193087200
Query: 891 tggaacgtgtggccatttattatttggcctcagaatttcactggttgtaaaatttccctg 950
| | | ||||||||||||||| || |||| ||||||| |||||||| |||||||||||
Sbjct: 193087201 ttgtatgtgtggccatttatttttcagcctaagaatttttctggttgt-aaatttccctg 193087259
Query: 951 ga 952
||
Sbjct: 193087260 ga 193087261
>Sscrofa_Chr07
|| Length = 134764511
Score = 539 bits (272), Expect = e-151
Identities = 275/276 (99%)
Strand = Plus / Minus
Query: 681 aggttaaagaaaatacaagagaagaaaaagattctcaaggaaaagtctgagaaagacttg 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97376436 aggttaaagaaaatacaagagaagaaaaagattctcaaggaaaagtctgagaaagacttg 97376377
Query: 741 gaacaacgaagggcagctggagaggcgatggagcctgctaatcttctggctgaggagaag 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97376376 gaacaacgaagggcagctggagaggcgatggagcctgctaatcttctggctgaggagaag 97376317
Query: 801 gatgaggatcttctgtttgaataatctttccttctctggttctttcagaaggcctaacat 860
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 97376316 gatgaggatcttctgtttgaataatctttccttctctgattctttcagaaggcctaacat 97376257
Query: 861 ggcaccattataattcacggtgtgtagatttggaacgtgtggccatttattatttggcct 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97376256 ggcaccattataattcacggtgtgtagatttggaacgtgtggccatttattatttggcct 97376197
Query: 921 cagaatttcactggttgtaaaatttccctggacatt 956
||||||||||||||||||||||||||||||||||||
Sbjct: 97376196 cagaatttcactggttgtaaaatttccctggacatt 97376161
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 122 ggcacagaccatcatgaaggctcggttaaaaggagcacaaacaggtcgaaacctcctgaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97389199 ggcacagaccatcatgaaggctcggttaaaaggagcacaaacaggtcgaaacctcctgaa 97389140
Query: 182 gaaaaaatctgatgccttaactcttcgatttcgacagatccttaagaagataatagag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97389139 gaaaaaatctgatgccttaactcttcgatttcgacagatccttaagaagataatagag 97389082
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 2 agctgactccggtagagaaggactctgtggctgcaacacttgcctggcctgggaccggag 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 97394368 agctgactccggtagagaaggactctgtggctgcagcacttgcctggcctgggaccggag 97394309
Query: 62 ccgcacggtcgccgtcagaatgtcgggcaaagaccgaattgaaatctttccctcgcgaat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97394308 ccgcacggtcgccgtcagaatgtcgggcaaagaccgaattgaaatctttccctcgcgaat 97394249
Query: 122 g 122
|
Sbjct: 97394248 g 97394248
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 433 gttatgagctgactggtttagccagaggtggggaacagttggctaaactgaagaggaatt 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97380126 gttatgagctgactggtttagccagaggtggggaacagttggctaaactgaagaggaatt 97380067
Query: 493 atgccaaagcagtggaactgctggtggaactagcttcgctgcag 536
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97380066 atgccaaagcagtggaactgctggtggaactagcttcgctgcag 97380023
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 603 gtcatcattcctcggattgaacgcacccttgcttatatcatcacagagctggatgagaga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97377420 gtcatcattcctcggattgaacgcacccttgcttatatcatcacagagctggatgagaga 97377361
Query: 663 gagcgagaagagttctataggtt 685
|||||||||||||||||||||||
Sbjct: 97377360 gagcgagaagagttctataggtt 97377338
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 238 agactaaaatgttgatgggtgaagtgatgagagaagctgctttttcacttgccgaggcca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97385501 agactaaaatgttgatgggtgaagtgatgagagaagctgctttttcacttgccgaggcca 97385442
Query: 298 agttcacagcaggggacttcag 319
||||||||||||||||||||||
Sbjct: 97385441 agttcacagcaggggacttcag 97385420
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 317 cagcaccacagttatccaaaacgtaaataaagcccaagtgaagattagagcaaagaaaga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97382564 cagcaccacagttatccaaaacgtaaataaagcccaagtgaagattagagcaaagaaaga 97382505
Query: 377 taatgtagcaggt 389
|||||||||||||
Sbjct: 97382504 taatgtagcaggt 97382492
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 535 agacttcctttgttactttggatgaagctattaagataaccaacaggcgtgtaaatgcca 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97379441 agacttcctttgttactttggatgaagctattaagataaccaacaggcgtgtaaatgcca 97379382
Query: 595 ttgaaca 601
|||||||
Sbjct: 97379381 ttgaaca 97379375
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 385 caggtgttactttgccagtatttgaacattatcatgaaggaaccgacagt 434
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97381967 caggtgttactttgccagtatttgaacattatcatgaaggaaccgacagt 97381918
>Sscrofa_Chr03
|| Length = 144787322
Score = 289 bits (146), Expect = 1e-75
Identities = 296/341 (86%), Gaps = 5/341 (1%)
Strand = Plus / Plus
Query: 384 gcaggtgttactttgccagtatttgaacattatcatgaaggaaccgacagttatgagctg 443
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 55568219 gcaggtgttactttgccagtatttgaaccttgccatgaaggaaca-acagttatgagctg 55568277
Query: 444 actggtttagccagaggtggggaa--cagttggctaaactgaagaggaattatgccaaag 501
||||||||| |||||||| ||||| |||| ||||| |||||| |||||||||||||||
Sbjct: 55568278 actggtttacccagaggtagggaaaccagtcagctaatctgaaggggaattatgccaaag 55568337
Query: 502 cagtggaactgctggtggaactagcttcgctgcagacttcctttgttactttggatgaag 561
|||||||||| ||||||||||||| || ||||||||||||| | || ||||||| ||| |
Sbjct: 55568338 cagtggaactactggtggaactagttttgctgcagacttccctggtaactttgggtgacg 55568397
Query: 562 ctattaagataaccaacaggcgtgtaaatgccattgaacatgtcatcattcctcggattg 621
||||||||||||||| | ||||||||||||| || |||||| |||||||| | ||
Sbjct: 55568398 ctattaagataaccacccggcgtgtaaatgctgttagacatgttatcattcc-cagacca 55568456
Query: 622 aacgcacccttgcttatatcatcacagagctggatgagagagagcgagaagagttctata 681
||||||||||||||||| |||||||||| ||||||||||| || |||| |||||| | |
Sbjct: 55568457 aacgcacccttgcttatgtcatcacagaactggatgagagggaatgagatgagttcca-a 55568515
Query: 682 ggttaaagaaaatacaagagaagaaaaagattctcaaggaa 722
|| | ||||||||||| |||||||||||||||||| |||||
Sbjct: 55568516 gggtcaagaaaatacaggagaagaaaaagattctccaggaa 55568556
Score = 222 bits (112), Expect = 3e-55
Identities = 241/282 (85%), Gaps = 9/282 (3%)
Strand = Plus / Plus
Query: 86 gggcaaagaccgaattgaaatctttccctcgcgaatggcacagaccatcatgaaggctcg 145
|||||||||| ||| ||||||||||||||| | |||||||||| |||||||||| ||||
Sbjct: 55567459 gggcaaagactgaactgaaatctttccctcacaaatggcacaggccatcatgaaagctca 55567518
Query: 146 gttaaaaggagcacaaacaggtcgaaacctcctgaagaaaaaa-------tctg-atgcc 197
| ||||||||||||| |||||| |||||||||||||||||||| |||| ||||
Sbjct: 55567519 ggtaaaaggagcacagacaggtggaaacctcctgaagaaaaaaaaaaaaatctgcatgct 55567578
Query: 198 ttaactcttcgatttcgacagatccttaagaagataatagagactaaaatgttgatgggt 257
|||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 55567579 ttaactcttcgatttccacagatccttaaaaagataattgagactaaa-tgttgatgggt 55567637
Query: 258 gaagtgatgagagaagctgctttttcacttgccgaggccaagttcacagcaggggacttc 317
||| |||||||||||||||| |||||||| | ||||||| |||||||| || | || ||
Sbjct: 55567638 gaaatgatgagagaagctgccgtttcactttctgaggccaggttcacagaagcgcacctc 55567697
Query: 318 agcaccacagttatccaaaacgtaaataaagcccaagtgaag 359
||| ||| ||| || ||| ||||||||||||||||||||
Sbjct: 55567698 agctccatggttttctgaaatataaataaagcccaagtgaag 55567739
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,378,913
Number of extensions: 248
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 15
Length of query: 961
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 940
Effective length of database: 2,808,413,156
Effective search space: 2639908366640
Effective search space used: 2639908366640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)