Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003122
(1462 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073694.1| alpha-2-macroglobulin receptor-associated pr... 551 e-157
Alignment gi|XP_002689624.1| PREDICTED: low density lipoprotein receptor-... 271 1e-72
Alignment gi|XP_589404.2| PREDICTED: low density lipoprotein receptor-rel... 271 1e-72
>ref|NP_001073694.1| alpha-2-macroglobulin receptor-associated protein [Bos taurus].
Length = 362
Score = 551 bits (1419), Expect = e-157
Identities = 262/328 (79%), Positives = 297/328 (90%), Gaps = 2/328 (0%)
Frame = +1
Query: 160 HGGKYSREKNEPAPPSKREPTGEFRIEKLNQLWEKAQRLNLSPVRLSELHADLKIQERDE 339
H GKYSREKNEPAPPSKREP EFR+EKLNQLWEKAQRLNL P++LS+LH DLKIQERDE
Sbjct: 35 HAGKYSREKNEPAPPSKREPAAEFRMEKLNQLWEKAQRLNLPPLKLSDLHTDLKIQERDE 94
Query: 340 FKWKKMKSEGLDEDGEKEAKLRRSLSVILAKYGLDGRKDT--LSTNFLNHGPEDDSLEDP 513
FKWKK+K+EGLDEDGE+EAKL RSLSVILAKYGLDGRKD+ +S+NF++HGP+D+SLEDP
Sbjct: 95 FKWKKLKAEGLDEDGEEEAKLVRSLSVILAKYGLDGRKDSRVVSSNFVDHGPDDESLEDP 154
Query: 514 RLEKLWHRARASGKFSSEELDKLWREFLHHQEKVREYNILLETLSRAEEIHENVISPADM 693
RLEKLWH+A+ SGKFSSEELDKLWRE HH+EKV+EY+ LLETL AEE HEN I P D+
Sbjct: 155 RLEKLWHKAKTSGKFSSEELDKLWRELQHHKEKVQEYHALLETLGGAEESHENAIGPVDL 214
Query: 694 SHVAEDALRSRHSELKDRLRDISQGLDRLQRVSHQGYGAEAEFAEPRVMDLWDLARAANF 873
V +AL SRH+ELKDRLR I QG DRL+RVSHQGYGAE EF EPRV+DLWD+A++ANF
Sbjct: 215 RGVQAEALASRHAELKDRLRSIGQGFDRLRRVSHQGYGAETEFTEPRVLDLWDMAKSANF 274
Query: 874 TQKELESFKEELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGDQEHISRNKERYALLEE 1053
T+KELESF+EELKHFE KIEKHNHYQKQLEISHQKLKHVESFGDQEH++RN+ERYA LEE
Sbjct: 275 TEKELESFREELKHFEVKIEKHNHYQKQLEISHQKLKHVESFGDQEHVTRNRERYATLEE 334
Query: 1054 KTKELGYKVKKHLQDLSSRVSRGRHNEL 1137
+TKELGYKVKKH+QDLSSR+SR RHNEL
Sbjct: 335 RTKELGYKVKKHMQDLSSRISRARHNEL 362
>ref|XP_002689624.1| PREDICTED: low density lipoprotein receptor-related protein
associated protein 1-like [Bos taurus].
Length = 176
Score = 271 bits (693), Expect = 1e-72
Identities = 128/161 (79%), Positives = 144/161 (89%)
Frame = +1
Query: 655 EEIHENVISPADMSHVAEDALRSRHSELKDRLRDISQGLDRLQRVSHQGYGAEAEFAEPR 834
EE HEN I P D+S V +AL SRH+ELKDRLR I QG D L+RVSHQGYGAE EF EPR
Sbjct: 16 EESHENAIRPVDLSGVQTEALASRHAELKDRLRSIGQGFDWLRRVSHQGYGAETEFTEPR 75
Query: 835 VMDLWDLARAANFTQKELESFKEELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGDQEH 1014
V+D WD+A++ANFT+KELESF+EELKHFE KIEKHNHYQKQLEISH+KLKHVESFGDQEH
Sbjct: 76 VLDPWDMAKSANFTEKELESFREELKHFEVKIEKHNHYQKQLEISHRKLKHVESFGDQEH 135
Query: 1015 ISRNKERYALLEEKTKELGYKVKKHLQDLSSRVSRGRHNEL 1137
++RNKERYA+LEEKTKELGYKVKKH+QDLSSR+SR RHNEL
Sbjct: 136 VTRNKERYAMLEEKTKELGYKVKKHMQDLSSRISRARHNEL 176
>ref|XP_589404.2| PREDICTED: low density lipoprotein receptor-related protein
associated protein 1-like [Bos taurus].
Length = 176
Score = 271 bits (693), Expect = 1e-72
Identities = 128/161 (79%), Positives = 144/161 (89%)
Frame = +1
Query: 655 EEIHENVISPADMSHVAEDALRSRHSELKDRLRDISQGLDRLQRVSHQGYGAEAEFAEPR 834
EE HEN I P D+S V +AL SRH+ELKDRLR I QG D L+RVSHQGYGAE EF EPR
Sbjct: 16 EESHENAIRPVDLSGVQTEALASRHAELKDRLRSIGQGFDWLRRVSHQGYGAETEFTEPR 75
Query: 835 VMDLWDLARAANFTQKELESFKEELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGDQEH 1014
V+D WD+A++ANFT+KELESF+EELKHFE KIEKHNHYQKQLEISH+KLKHVESFGDQEH
Sbjct: 76 VLDPWDMAKSANFTEKELESFREELKHFEVKIEKHNHYQKQLEISHRKLKHVESFGDQEH 135
Query: 1015 ISRNKERYALLEEKTKELGYKVKKHLQDLSSRVSRGRHNEL 1137
++RNKERYA+LEEKTKELGYKVKKH+QDLSSR+SR RHNEL
Sbjct: 136 VTRNKERYAMLEEKTKELGYKVKKHMQDLSSRISRARHNEL 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,249,426
Number of extensions: 1241390
Number of successful extensions: 10578
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9978
Number of HSP's successfully gapped: 3
Length of query: 487
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 381
Effective length of database: 14,174,046
Effective search space: 5400311526
Effective search space used: 5400311526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003122
(1462 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536218.2| PREDICTED: similar to Alpha-2-macroglobulin rec... 549 e-156
>ref|XP_536218.2| PREDICTED: similar to Alpha-2-macroglobulin receptor-associated
protein precursor (Alpha-2-MRAP) (Low density lipoprotein
receptor-related protein-associated protein 1) (RAP)
[Canis familiaris].
Length = 439
Score = 549 bits (1414), Expect = e-156
Identities = 266/328 (81%), Positives = 297/328 (90%), Gaps = 2/328 (0%)
Frame = +1
Query: 160 HGGKYSREKNEPAPPSKREPTGEFRIEKLNQLWEKAQRLNLSPVRLSELHADLKIQERDE 339
HGGKYSREKNEP P KRE GEFR+EKLNQLWEKAQRL LSPV+LSELHADLK+QERDE
Sbjct: 112 HGGKYSREKNEPELPPKRESGGEFRMEKLNQLWEKAQRLQLSPVKLSELHADLKMQERDE 171
Query: 340 FKWKKMKSEGLDEDGEKEAKLRRSLSVILAKYGLDGRKDT--LSTNFLNHGPEDDSLEDP 513
F WKK+K+EGLDEDGEK+AKL R+LSVILAKYGLDGRKD +S+N L+ EDDSLEDP
Sbjct: 172 FAWKKLKAEGLDEDGEKQAKLTRNLSVILAKYGLDGRKDARAVSSNSLSDATEDDSLEDP 231
Query: 514 RLEKLWHRARASGKFSSEELDKLWREFLHHQEKVREYNILLETLSRAEEIHENVISPADM 693
RLEKLWH+A+ SGKFSSEELDKLWREF HHQEKVREY++LLETLSR EEI ENVISP D
Sbjct: 232 RLEKLWHKAKTSGKFSSEELDKLWREFQHHQEKVREYHVLLETLSRTEEIQENVISPFDT 291
Query: 694 SHVAEDALRSRHSELKDRLRDISQGLDRLQRVSHQGYGAEAEFAEPRVMDLWDLARAANF 873
S + ED L S+H+ELKDRLR I+QG DRL+RVSH+GYG +AEF EPRV+DLWDLA++ANF
Sbjct: 292 SRIKEDVLHSKHAELKDRLRGINQGYDRLRRVSHRGYGTQAEFEEPRVIDLWDLAKSANF 351
Query: 874 TQKELESFKEELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGDQEHISRNKERYALLEE 1053
T+KELESF+EELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGD+EH+SRNKE+YA+LEE
Sbjct: 352 TEKELESFREELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGDREHVSRNKEKYAMLEE 411
Query: 1054 KTKELGYKVKKHLQDLSSRVSRGRHNEL 1137
KTKELGYKVKKHLQDLS R+SR RHNEL
Sbjct: 412 KTKELGYKVKKHLQDLSGRISRARHNEL 439
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,377,249
Number of extensions: 1285689
Number of successful extensions: 11191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10505
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 380
Effective length of database: 15,307,552
Effective search space: 5816869760
Effective search space used: 5816869760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003122
(1462 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002328.1| alpha-2-macroglobulin receptor-associated prote... 502 e-142
>ref|NP_002328.1| alpha-2-macroglobulin receptor-associated protein precursor [Homo
sapiens].
Length = 357
Score = 502 bits (1293), Expect = e-142
Identities = 242/328 (73%), Positives = 286/328 (87%), Gaps = 2/328 (0%)
Frame = +1
Query: 160 HGGKYSREKNEPAPPSKREPTGEFRIEKLNQLWEKAQRLNLSPVRLSELHADLKIQERDE 339
HGGKYSREKN+P P KRE EFR+EKLNQLWEKAQRL+L PVRL+ELHADLKIQERDE
Sbjct: 31 HGGKYSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDE 90
Query: 340 FKWKKMKSEGLDEDGEKEAKLRRSLSVILAKYGLDGRKDT--LSTNFLNHGPEDDSLEDP 513
WKK+K +GLDEDGEKEA+L R+L+VILAKYGLDG+KD +++N L+ G ++D L+DP
Sbjct: 91 LAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLS-GTQEDGLDDP 149
Query: 514 RLEKLWHRARASGKFSSEELDKLWREFLHHQEKVREYNILLETLSRAEEIHENVISPADM 693
RLEKLWH+A+ SGKFS EELDKLWREFLHH+EKV EYN+LLETLSR EEIHENVISP+D+
Sbjct: 150 RLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDL 209
Query: 694 SHVAEDALRSRHSELKDRLRDISQGLDRLQRVSHQGYGAEAEFAEPRVMDLWDLARAANF 873
S + L SRH+ELK++LR I+QGLDRL+RVSHQGY EAEF EPRV+DLWDLA++AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 874 TQKELESFKEELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGDQEHISRNKERYALLEE 1053
T KELE+F+EELKHFEAKIEKHNHYQKQLEI+H+KL+H ES GD E +SR++E++ALLE
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 1054 KTKELGYKVKKHLQDLSSRVSRGRHNEL 1137
+TKELGY VKKHLQDLS R+SR RHNEL
Sbjct: 330 RTKELGYTVKKHLQDLSGRISRARHNEL 357
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,140,637
Number of extensions: 1241171
Number of successful extensions: 10406
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9770
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 380
Effective length of database: 14,770,016
Effective search space: 5612606080
Effective search space used: 5612606080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003122
(1462 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038615.2| alpha-2-macroglobulin receptor-associated prote... 519 e-147
>ref|NP_038615.2| alpha-2-macroglobulin receptor-associated protein precursor [Mus
musculus].
Length = 360
Score = 519 bits (1337), Expect = e-147
Identities = 253/328 (77%), Positives = 293/328 (89%), Gaps = 2/328 (0%)
Frame = +1
Query: 160 HGGKYSREKNEPAPPSKREPTGEFRIEKLNQLWEKAQRLNLSPVRLSELHADLKIQERDE 339
HGGKYSREKNEP +KRE EFR+EKLNQLWEKA+RL+LSPVRL+ELH+DLKIQERDE
Sbjct: 34 HGGKYSREKNEPEMAAKRESGEEFRMEKLNQLWEKAKRLHLSPVRLAELHSDLKIQERDE 93
Query: 340 FKWKKMKSEGLDEDGEKEAKLRRSLSVILAKYGLDGRKDT--LSTNFLNHGPEDDSLEDP 513
WKK+K EGLD+DGEKEAKL +L+VILA+YGLDGRKD + +N LN +D+ L DP
Sbjct: 94 LNWKKLKVEGLDKDGEKEAKLIHNLNVILARYGLDGRKDAQMVHSNALNEDTQDE-LGDP 152
Query: 514 RLEKLWHRARASGKFSSEELDKLWREFLHHQEKVREYNILLETLSRAEEIHENVISPADM 693
RLEKLWH+A+ SGKFSSEELDKLWREFLH++EK++EYN+LL+TLSRAEE +EN++SP+DM
Sbjct: 153 RLEKLWHKAKTSGKFSSEELDKLWREFLHYKEKIQEYNVLLDTLSRAEEGYENLLSPSDM 212
Query: 694 SHVAEDALRSRHSELKDRLRDISQGLDRLQRVSHQGYGAEAEFAEPRVMDLWDLARAANF 873
+H+ D L S+HSELKDRLR I+QGLDRL++VSHQGYG+ EF EPRV+DLWDLA++ANF
Sbjct: 213 AHIKSDTLISKHSELKDRLRSINQGLDRLRKVSHQGYGSTTEFEEPRVIDLWDLAQSANF 272
Query: 874 TQKELESFKEELKHFEAKIEKHNHYQKQLEISHQKLKHVESFGDQEHISRNKERYALLEE 1053
T+KELESF+EELKHFEAKIEKHNHYQKQLEISHQKLKHVES GD EHISRNKE+Y LLEE
Sbjct: 273 TEKELESFREELKHFEAKIEKHNHYQKQLEISHQKLKHVESIGDPEHISRNKEKYVLLEE 332
Query: 1054 KTKELGYKVKKHLQDLSSRVSRGRHNEL 1137
KTKELGYKVKKHLQDLSSRVSR RHNEL
Sbjct: 333 KTKELGYKVKKHLQDLSSRVSRARHNEL 360
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,669,946
Number of extensions: 1008328
Number of successful extensions: 7850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7346
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 382
Effective length of database: 12,463,779
Effective search space: 4761163578
Effective search space used: 4761163578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003122
(1462 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106907.1| alpha-2-macroglobulin receptor-associated pr... 655 0.0
>ref|NP_001106907.1| alpha-2-macroglobulin receptor-associated protein [Sus scrofa].
Length = 356
Score = 655 bits (1690), Expect = 0.0
Identities = 330/356 (92%), Positives = 331/356 (92%)
Frame = +1
Query: 70 MALRRVXXXXXXXXXXXXXXXXXXXXXXXXHGGKYSREKNEPAPPSKREPTGEFRIEKLN 249
MALRRV HGGKYSREKNEPAPPSKREPTGEFRIEKLN
Sbjct: 1 MALRRVRAGLRELRPLLLLLLLLGPWPAAGHGGKYSREKNEPAPPSKREPTGEFRIEKLN 60
Query: 250 QLWEKAQRLNLSPVRLSELHADLKIQERDEFKWKKMKSEGLDEDGEKEAKLRRSLSVILA 429
QLWEKAQRLNLSPVRLSELHADLKIQERDEFKWKKMKSEGLDEDGEKEAKLRRSLSVILA
Sbjct: 61 QLWEKAQRLNLSPVRLSELHADLKIQERDEFKWKKMKSEGLDEDGEKEAKLRRSLSVILA 120
Query: 430 KYGLDGRKDTLSTNFLNHGPEDDSLEDPRLEKLWHRARASGKFSSEELDKLWREFLHHQE 609
KYGLDGRKDTLSTNFLNHGPEDDSLEDPRLEKLWHRARASGKFS EELDKLWREFLHHQE
Sbjct: 121 KYGLDGRKDTLSTNFLNHGPEDDSLEDPRLEKLWHRARASGKFSCEELDKLWREFLHHQE 180
Query: 610 KVREYNILLETLSRAEEIHENVISPADMSHVAEDALRSRHSELKDRLRDISQGLDRLQRV 789
KVREYNILLETLSRAEEIHENVISPADMSHVAEDALRSRHSELKDRL+DISQGLDRLQRV
Sbjct: 181 KVREYNILLETLSRAEEIHENVISPADMSHVAEDALRSRHSELKDRLQDISQGLDRLQRV 240
Query: 790 SHQGYGAEAEFAEPRVMDLWDLARAANFTQKELESFKEELKHFEAKIEKHNHYQKQLEIS 969
SHQGYGAEAEFAEPRVMDLWDLARAANFTQKELESFKEELKHFEAKIEKHNHYQKQLEIS
Sbjct: 241 SHQGYGAEAEFAEPRVMDLWDLARAANFTQKELESFKEELKHFEAKIEKHNHYQKQLEIS 300
Query: 970 HQKLKHVESFGDQEHISRNKERYALLEEKTKELGYKVKKHLQDLSSRVSRGRHNEL 1137
HQKLKHVESFGDQEHISRNKERYALLEEKTKELGYKVKKHLQDLSSRVSRGRHNEL
Sbjct: 301 HQKLKHVESFGDQEHISRNKERYALLEEKTKELGYKVKKHLQDLSSRVSRGRHNEL 356
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,260,172
Number of extensions: 804881
Number of successful extensions: 7033
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6568
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 384
Effective length of database: 8,779,541
Effective search space: 3371343744
Effective search space used: 3371343744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003122
(1462 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 724 0.0
Sscrofa_Chr01 86 6e-14
>Sscrofa_Chr08
|| Length = 148491826
Score = 724 bits (365), Expect = 0.0
Identities = 368/369 (99%)
Strand = Plus / Plus
Query: 1076 aggtgaagaagcacttacaggacctgtccagccgcgtctccagagggcgacacaacgagc 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842291 aggtgaagaagcacttacaggacctgtccagccgcgtctccagagggcgacacaacgagc 1842350
Query: 1136 tctgaggccccgggagcccagggcgggcgcaggaggcaccagcgggctggggttcctaaa 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842351 tctgaggccccgggagcccagggcgggcgcaggaggcaccagcgggctggggttcctaaa 1842410
Query: 1196 gacggcccggccgccctggggtggcttgtccgtcagcagaacctcagtggaggcgtgacg 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1842411 gacggcccggccgccctggggtggcttgtccgtcagcagaacctcagtggaggcatgacg 1842470
Query: 1256 gggaccagccacgggggcccggggggaggagccccgccggtgaccccctgctccctggct 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842471 gggaccagccacgggggcccggggggaggagccccgccggtgaccccctgctccctggct 1842530
Query: 1316 ggcgggctctgccctcagcccagccgactgtcacctctgccgaagtcacagtttgcatca 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842531 ggcgggctctgccctcagcccagccgactgtcacctctgccgaagtcacagtttgcatca 1842590
Query: 1376 aaatcttacagatcttctgctgaaagtactgtgtacagaagtccctgcaaatacagtgtt 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842591 aaatcttacagatcttctgctgaaagtactgtgtacagaagtccctgcaaatacagtgtt 1842650
Query: 1436 tcaatcttg 1444
|||||||||
Sbjct: 1842651 tcaatcttg 1842659
Score = 525 bits (265), Expect = e-146
Identities = 272/273 (99%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 1 ggccagccgggccgggtcgcggctgcttctgtccggagctcgcggggtctcggcgtctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826159 ggccagccgggccgggtcgcggctgcttctgtccggagctcgcggggtctcggcgtctgg 1826218
Query: 61 gggaggaagatggcgttacggagggtccgagctgggctgcgcgagctccggccgctgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826219 gggaggaagatggcgttacggagggtccgagctgggctgcgcgagctccggccgctgctg 1826278
Query: 121 ctgctgcttctgctcctcgggccatggccggcggcggggcacggcggcaagtactcgcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826279 ctgctgcttctgctcctcgggccatggccggcggcggggcacggcggcaagtactcgcgg 1826338
Query: 181 gagaagaacgagcccgcgccgccctcgaagcgcgagccgacgggggagttccgcatcgag 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1826339 gagaagaacgagcccgcgccgccctcgaagcgcgag-cgacgggggagttccgcatcgag 1826397
Query: 241 aagctgaaccagctgtgggagaaggcccagcgg 273
|||||||||||||||||||||||||||||||||
Sbjct: 1826398 aagctgaaccagctgtgggagaaggcccagcgg 1826430
Score = 361 bits (182), Expect = 7e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 899 aggaagagctgaagcactttgaagccaaaatcgaaaagcataaccactatcagaagcagc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1837812 aggaagagctgaagcactttgaagccaaaatcgaaaagcataaccactatcagaagcagc 1837871
Query: 959 tagaaatttctcatcagaagctgaaacacgtggagagctttggcgaccaggagcacatca 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1837872 tagaaatttctcatcagaagctgaaacacgtggagagctttggcgaccaggagcacatca 1837931
Query: 1019 gccggaacaaggagcgctacgcgctgctggaggagaagaccaaggagctgggctacaagg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1837932 gccggaacaaggagcgctacgcgctgctggaggagaagaccaaggagctgggctacaagg 1837991
Query: 1079 tg 1080
||
Sbjct: 1837992 tg 1837993
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 657 agaaatccacgagaatgtcatcagccccgcggacatgagccacgtcgcggaggacgccct 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835589 agaaatccacgagaatgtcatcagccccgcggacatgagccacgtcgcggaggacgccct 1835648
Query: 717 gcggagcagacactccgagctcaaggacaggctgcgggacatcagccagggcctggaccg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835649 gcggagcagacactccgagctcaaggacaggctgcgggacatcagccagggcctggaccg 1835708
Query: 777 cctgcagagggtcagccaccagggctacggcgccgaggcgg 817
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835709 cctgcagagggtcagccaccagggctacggcgccgaggcgg 1835749
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 273 gctgaacctttccccggtgagactgtctgagctccacgctgatctgaagatacaggaacg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832005 gctgaacctttccccggtgagactgtctgagctccacgctgatctgaagatacaggaacg 1832064
Query: 333 ggacgaattcaagtggaagaagatgaagtcggaaggcttggatgaggacggcgagaagga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832065 ggacgaattcaagtggaagaagatgaagtcggaaggcttggatgaggacggcgagaagga 1832124
Query: 393 ggcaaaactgagacgcagcctcagcg 418
||||||||||||||||||||||||||
Sbjct: 1832125 ggcaaaactgagacgcagcctcagcg 1832150
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 537 ggcgagggcgtctgggaagttctccagcgaagaactggacaagctgtggcgggagttcct 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835149 ggcgagggcgtctgggaagttctccagcgaagaactggacaagctgtggcgggagttcct 1835208
Query: 597 gcatcaccaggagaaggtccgcgaatacaacatcctgctggagaccctgagcagggctga 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835209 gcatcaccaggagaaggtccgcgaatacaacatcctgctggagaccctgagcagggctga 1835268
Query: 657 ag 658
||
Sbjct: 1835269 ag 1835270
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 418 gtcatcctggccaagtacggtctggacgggagaaaggacaccctgagcaccaacttcctc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834118 gtcatcctggccaagtacggtctggacgggagaaaggacaccctgagcaccaacttcctc 1834177
Query: 478 aaccacggccccgaggacgacagcctggaggacccccggctggagaagctgtggcacagg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834178 aaccacggccccgaggacgacagcctggaggacccccggctggagaagctgtggcacagg 1834237
Query: 538 g 538
|
Sbjct: 1834238 g 1834238
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 817 gagttcgcagagccgcgggtgatggacctgtgggacctggccagggcagccaacttcacc 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836595 gagttcgcagagccgcgggtgatggacctgtgggacctggccagggcagccaacttcacc 1836654
Query: 877 cagaaggagctggaatcctttaagg 901
|||||||||||||||||||||||||
Sbjct: 1836655 cagaaggagctggaatcctttaagg 1836679
>Sscrofa_Chr01
|| Length = 315321322
Score = 85.7 bits (43), Expect = 6e-14
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 574 gacaagctgtggcgggagttcctgcatcaccaggagaaggtccgcgaatacaacatcctg 633
||||||| ||||||||| || | ||||||| |||||| ||||| ||||| ||||||||
Sbjct: 85031084 gacaagcggtggcgggactttcagcatcacagggagaaagtccgagaatataacatcctt 85031025
Query: 634 ctggagaccctgagcagggctgaagaaatccacgagaatgtca 676
|||||||||||| ||||| |||||||||| | ||| |||||||
Sbjct: 85031024 ctggagaccctgggcaggcctgaagaaattcccgaaaatgtca 85030982
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,663,203
Number of extensions: 625
Number of successful extensions: 625
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 9
Length of query: 1462
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1441
Effective length of database: 2,808,413,156
Effective search space: 4046923357796
Effective search space used: 4046923357796
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)