Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003124
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015549.1| abhydrolase domain-containing protein 2 [Bos... 470 e-133
Alignment gi|NP_001030266.1| abhydrolase domain-containing protein 1 [Bos... 74 3e-13
Alignment gi|NP_001069655.1| abhydrolase domain-containing protein 3 [Bos... 73 4e-13
>ref|NP_001015549.1| abhydrolase domain-containing protein 2 [Bos taurus].
Length = 425
Score = 470 bits (1210), Expect = e-133
Identities = 225/241 (93%), Positives = 227/241 (94%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAM+ETSELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMMETSELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDD+TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|NP_001030266.1| abhydrolase domain-containing protein 1 [Bos taurus].
Length = 404
Score = 73.6 bits (179), Expect = 3e-13
Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Frame = +2
Query: 386 FLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDL 565
FL + CP+ T E P +W G +QT ++ + + R PY T DG D
Sbjct: 51 FLEQHCPV-TLETFYPTLWCFEGRLQT-IFRVLLQSRPVVPYSSEVLET-PDGGQILLDW 107
Query: 566 FEPLAEHCVGDDV--TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIEL 739
T+++ PGI S++ YI VD A K+GYR V N+ G EL
Sbjct: 108 ASQSNSQYPDPSTQPTVLLLPGITGSSQETYILHLVDQALKDGYRAVVFNNRGCRGE-EL 166
Query: 740 TSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGET 886
+ R F T + ++N+IK YP L+ VG SLGG +V +L T
Sbjct: 167 LTHRAFCASNTEDLVTVINHIKSRYPQAPLLAVGISLGGILVLNHLART 215
>ref|NP_001069655.1| abhydrolase domain-containing protein 3 [Bos taurus].
Length = 411
Score = 72.8 bits (177), Expect = 4e-13
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 3/191 (1%)
Frame = +2
Query: 320 CLNLKSPTAPPDLYFQDSGLSRFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRS 499
C L S P L SRFL CP++T+ Y P +W QT L +
Sbjct: 46 CYYLSSIAKKPQLVTGGESFSRFLQDHCPVVTETYYPT-VWCWESRGQTLLRPFI--TSK 102
Query: 500 PHPYGHRKFITMSDGATSTFDLFE-PLAEHCVGDDV--TMVICPGIANHSEKQYIRTFVD 670
P + I +DG + D F+ ++H + T+++ PG+ S++ YI +
Sbjct: 103 PLVQYRNELIKTADGGQISLDWFDNDNSKHYMDASTRPTVLLLPGLTGTSKESYILHMIH 162
Query: 671 YAQKNGYRCAVLNHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSL 850
+++ GYR V N+ G L +PR + T + +++++ YP + G S+
Sbjct: 163 LSEELGYRYVVFNNRGVAGE-NLLTPRTYCCSNTEDLETVIHHVHSLYPSAPFLAAGVSM 221
Query: 851 GGNIVCKYLGE 883
GG ++ YLG+
Sbjct: 222 GGMLLLNYLGK 232
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,984,108
Number of extensions: 1040633
Number of successful extensions: 3559
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003124
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536188.2| PREDICTED: similar to alpha/beta hydrolase fold... 466 e-131
Alignment gi|XP_859662.1| PREDICTED: similar to alpha/beta hydrolase fold... 466 e-131
Alignment gi|XP_849732.1| PREDICTED: similar to alpha/beta hydrolase fold... 466 e-131
Alignment gi|XP_537301.2| PREDICTED: similar to alpha/beta hydrolase doma... 80 4e-15
>ref|XP_536188.2| PREDICTED: similar to alpha/beta hydrolase fold protein isoform 2
[Canis familiaris].
Length = 421
Score = 466 bits (1198), Expect = e-131
Identities = 223/241 (92%), Positives = 225/241 (93%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAMLET ELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDD+TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIKKTYP TQLVVVGFSLGGNIVCKYLGETQANQ+KVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKKTYPQTQLVVVGFSLGGNIVCKYLGETQANQDKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|XP_859662.1| PREDICTED: similar to alpha/beta hydrolase fold protein isoform 4
[Canis familiaris].
Length = 458
Score = 466 bits (1198), Expect = e-131
Identities = 223/241 (92%), Positives = 225/241 (93%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAMLET ELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDD+TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIKKTYP TQLVVVGFSLGGNIVCKYLGETQANQ+KVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKKTYPQTQLVVVGFSLGGNIVCKYLGETQANQDKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|XP_849732.1| PREDICTED: similar to alpha/beta hydrolase fold protein isoform 3
[Canis familiaris].
Length = 425
Score = 466 bits (1198), Expect = e-131
Identities = 223/241 (92%), Positives = 225/241 (93%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAMLET ELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDD+TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIKKTYP TQLVVVGFSLGGNIVCKYLGETQANQ+KVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKKTYPQTQLVVVGFSLGGNIVCKYLGETQANQDKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|XP_537301.2| PREDICTED: similar to alpha/beta hydrolase domain containing
protein 3 [Canis familiaris].
Length = 393
Score = 79.7 bits (195), Expect = 4e-15
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 3/190 (1%)
Frame = +2
Query: 323 LNLKSPTAPPDLYFQDSGLSRFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSP 502
L+L + P L+ SRFL CP++T+ Y P +W QT L + P
Sbjct: 29 LSLILGISKPQLFTGGESFSRFLQDLCPVVTETYYPT-VWCWESPGQTLLRPFI--TSKP 85
Query: 503 HPYGHRKFITMSDGATSTFDLFEPLAEHCVGDDVT---MVICPGIANHSEKQYIRTFVDY 673
+ I +DG + D F+ C D T +++ PG+ S++ YI +
Sbjct: 86 SVQYRNELIKTADGGQISLDWFDNYNSKCYMDATTRPTILLLPGLTGTSKESYILHMIHL 145
Query: 674 AQKNGYRCAVLNHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLG 853
+++ GYRC V N+ G + L +PR + T + +++++ YP + G S+G
Sbjct: 146 SEELGYRCVVFNNRG-VAGENLLTPRTYCCANTEDLETVIHHVHSLYPSAPFLAAGVSMG 204
Query: 854 GNIVCKYLGE 883
G ++ YLG+
Sbjct: 205 GMLLLNYLGK 214
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,597,588
Number of extensions: 1070921
Number of successful extensions: 3427
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3422
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003124
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008942.3| abhydrolase domain-containing protein 2 [Homo s... 469 e-132
Alignment gi|NP_690888.1| abhydrolase domain-containing protein 2 [Homo s... 469 e-132
Alignment gi|NP_612213.2| abhydrolase domain-containing protein 3 [Homo s... 81 2e-15
Alignment gi|NP_115993.3| abhydrolase domain-containing protein 1 [Homo s... 60 4e-09
>ref|NP_008942.3| abhydrolase domain-containing protein 2 [Homo sapiens].
Length = 425
Score = 469 bits (1207), Expect = e-132
Identities = 225/241 (93%), Positives = 226/241 (93%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAMLET ELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDD+TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|NP_690888.1| abhydrolase domain-containing protein 2 [Homo sapiens].
Length = 425
Score = 469 bits (1207), Expect = e-132
Identities = 225/241 (93%), Positives = 226/241 (93%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAMLET ELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDD+TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|NP_612213.2| abhydrolase domain-containing protein 3 [Homo sapiens].
Length = 409
Score = 80.9 bits (198), Expect = 2e-15
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 4/189 (2%)
Frame = +2
Query: 329 LKSPTAPPDLYFQDSGLSRFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHP 508
L S P L SRFL CP++T+ Y P +W G QT L + S P
Sbjct: 49 LSSIAKKPQLVTGGESFSRFLQDHCPVVTETYYPT-VWCWEGRGQTLL---RPFITSKPP 104
Query: 509 YGHR-KFITMSDGATSTFDLFEPLAEHCVGDDVT---MVICPGIANHSEKQYIRTFVDYA 676
+R + I +DG + D F+ C D T +++ PG+ S++ YI + +
Sbjct: 105 VQYRNELIKTADGGQISLDWFDNDNSTCYMDASTRPTILLLPGLTGTSKESYILHMIHLS 164
Query: 677 QKNGYRCAVLNHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGG 856
++ GYRC V N+ G + L +PR + T + +++++ YP + G S+GG
Sbjct: 165 EELGYRCVVFNNRG-VAGENLLTPRTYCCANTEDLETVIHHVHSLYPSAPFLAAGVSMGG 223
Query: 857 NIVCKYLGE 883
++ YLG+
Sbjct: 224 MLLLNYLGK 232
>ref|NP_115993.3| abhydrolase domain-containing protein 1 [Homo sapiens].
Length = 405
Score = 59.7 bits (143), Expect = 4e-09
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 3/171 (1%)
Frame = +2
Query: 386 FLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDL 565
FL C + T+ + P L W G +Q+ + P + DG D
Sbjct: 51 FLEPHCSITTETFYPTL-WCFEGRLQSIFQVLLQS--QPLVLYQSDILQTPDGGQLLLDW 107
Query: 566 FEPLAEHCVGDDVT---MVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIE 736
+ D T +++ PGI S++ Y+ V+ A ++GY+ V N+ G E
Sbjct: 108 AKQPDSSQDPDPTTQPIVLLLPGITGSSQETYVLHLVNQALRDGYQAVVFNNRGCRGE-E 166
Query: 737 LTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQ 889
L + R F T + +VN+IK YP L+ VG S GG +V +L + +
Sbjct: 167 LRTHRAFCASNTEDLETVVNHIKHRYPQAPLLAVGISFGGILVLNHLAQAR 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,923,588
Number of extensions: 1059076
Number of successful extensions: 3633
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3620
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003124
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061281.3| abhydrolase domain-containing protein 2 [Mus mu... 466 e-131
Alignment gi|NP_598891.1| abhydrolase domain-containing protein 3 [Mus mu... 79 5e-15
Alignment gi|NP_067279.2| abhydrolase domain-containing protein 1 [Mus mu... 69 6e-12
>ref|NP_061281.3| abhydrolase domain-containing protein 2 [Mus musculus].
Length = 425
Score = 466 bits (1198), Expect = e-131
Identities = 223/241 (92%), Positives = 225/241 (93%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAMLET ELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDD+TMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIK+TYP TQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKRTYPQTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|NP_598891.1| abhydrolase domain-containing protein 3 [Mus musculus].
Length = 411
Score = 79.0 bits (193), Expect = 5e-15
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 4/192 (2%)
Frame = +2
Query: 320 CLNLKSPTAPPDLYFQDSGLSRFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRS 499
C L S P L SRFL CP++T+ Y P +W QT L + S
Sbjct: 46 CYYLSSIAKKPQLVIGGESFSRFLQDHCPVVTETYYPT-VWCWESRGQTLL---RPFITS 101
Query: 500 PHPYGHR-KFITMSDGATSTFDLFEPLAEHCVGDDVT---MVICPGIANHSEKQYIRTFV 667
P +R + I +DG + D F+ D T +++ PG+ S++ YI +
Sbjct: 102 KPPVQYRNELIKTADGGQISLDWFDNNNSAYYVDASTRPTILLLPGLTGTSKESYILHMI 161
Query: 668 DYAQKNGYRCAVLNHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFS 847
+++ GYRC V N+ G + L +PR + T + A+V+++ YP + G S
Sbjct: 162 HLSEELGYRCVVFNNRG-VAGESLLTPRTYCCANTEDLEAVVHHVHSLYPGAPFLAAGVS 220
Query: 848 LGGNIVCKYLGE 883
+GG ++ YLG+
Sbjct: 221 MGGMLLLNYLGK 232
>ref|NP_067279.2| abhydrolase domain-containing protein 1 [Mus musculus].
Length = 412
Score = 68.9 bits (167), Expect = 6e-12
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 3/170 (1%)
Frame = +2
Query: 386 FLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDL 565
FL + CP+ + + P L W G +QT ++ + + + PY + + DG D
Sbjct: 59 FLEQHCPVTVETFYPTL-WCFEGRLQT-IFRVLLQSQPVVPY-RSEVLQTPDGGQFLLDW 115
Query: 566 FEPLAEHCVGDDVT---MVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIE 736
E D T +++ PGI+ S++ YI V+ A K+GYR V N+ G E
Sbjct: 116 AEQPNSTHYPDPTTQPIVLLLPGISGSSQEPYILHLVNQALKDGYRAVVFNNRGCRGE-E 174
Query: 737 LTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGET 886
L + R + T + +V +IK+ Y L+ VG S GG +V YL +T
Sbjct: 175 LLTHRAYCASNTEDLETVVKHIKRRYSQAPLLAVGISFGGILVLNYLAQT 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,961,033
Number of extensions: 887890
Number of successful extensions: 2965
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2961
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003124
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926024.1| PREDICTED: abhydrolase domain-containing pro... 471 e-133
Alignment gi|XP_003125360.1| PREDICTED: abhydrolase domain-containing pro... 67 1e-11
>ref|XP_001926024.1| PREDICTED: abhydrolase domain-containing protein 2 [Sus scrofa].
Length = 425
Score = 471 bits (1213), Expect = e-133
Identities = 227/241 (94%), Positives = 227/241 (94%)
Frame = +2
Query: 227 MNAMLETSELPAVFDGXXXXXXXXXXXXXXRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 406
MNAMLETSELPAVFDG RCLNLKSPTAPPDLYFQDSGLSRFLLKSCP
Sbjct: 1 MNAMLETSELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCP 60
Query: 407 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 586
LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH
Sbjct: 61 LLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEH 120
Query: 587 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 766
CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG
Sbjct: 121 CVGDDVTMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYG 180
Query: 767 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 946
CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL
Sbjct: 181 CTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSAL 240
Query: 947 R 949
R
Sbjct: 241 R 241
>ref|XP_003125360.1| PREDICTED: abhydrolase domain-containing protein 1-like [Sus
scrofa].
Length = 403
Score = 67.4 bits (163), Expect = 1e-11
Identities = 57/175 (32%), Positives = 76/175 (43%), Gaps = 3/175 (1%)
Frame = +2
Query: 371 SGLSRFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGAT 550
S L FL + CPL T E P W G +QT ++ P + + DG
Sbjct: 46 SQLRAFLEQHCPL-TVETFYPTFWCVEGRLQTIF--RVFLQSRPVVSYWSEVLQTPDGGQ 102
Query: 551 STFDLFEPLAEHCVGDDVT---MVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGA 721
D D T +++ PGI S++ YI VD A K+GYR V N+ G
Sbjct: 103 FLLDWAGQHNRSQRPDPSTQPIVLLLPGITGSSQETYILHLVDQALKDGYRAVVFNNRGC 162
Query: 722 LPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGET 886
EL + R + T + A VN+IK Y L+ VG SLGG +V YL T
Sbjct: 163 RGE-ELLTYRAYCASNTEDLEAAVNHIKGHYSQAPLLAVGISLGGILVLNYLART 216
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,474,140
Number of extensions: 667477
Number of successful extensions: 2262
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2256
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003124
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 446 e-122
>Sscrofa_Chr07
|| Length = 134764511
Score = 446 bits (225), Expect = e-122
Identities = 228/229 (99%)
Strand = Plus / Plus
Query: 764 ggctgtacctgggaatttggagccatggtcaactacatcaagaagacgtatcccctcacc 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59719957 ggctgtacctgggaatttggagccatggtcaactacatcaagaagacgtatcccctcacc 59720016
Query: 824 cagctggtggttgtgggctttagcctgggcggtaatatcgtgtgtaaatacttgggggag 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59720017 cagctggtggttgtgggctttagcctgggcggtaatatcgtgtgtaaatacttgggggag 59720076
Query: 884 acccaggccaaccaagaaaaggtcctttgctgcgtcagcgtgtgccagggctacagcgca 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59720077 acccaggccaaccaagaaaaggtcctttgctgcgtcagcgtgtgccagggctacagcgca 59720136
Query: 944 ctgaggtgagtgatgcccgccgtgtgctccccctcctgtctgccatcca 992
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 59720137 ctgaggtgagtgatgccggccgtgtgctccccctcctgtctgccatcca 59720185
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Plus
Query: 219 agatcaagatgaatgccatgctggagacctccgagcttccggccgtgtttgatggggtga 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59661669 agatcaagatgaatgccatgctggagacctccgagcttccggccgtgtttgatggggtga 59661728
Query: 279 agctggccgcagtggctgctgtgctgtatgtgatcgtccggtgtttgaacctgaagagcc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59661729 agctggccgcagtggctgctgtgctgtatgtgatcgtccggtgtttgaacctgaagagcc 59661788
Query: 339 ccacagccccgcctgacctctacttccaggactcagggctctcacgcttcctgctcaagt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59661789 ccacagccccgcctgacctctacttccaggactcagggctctcacgcttcctgctcaagt 59661848
Query: 399 cctgtcctcttctgaccaaaga 420
||||||||||||||||||||||
Sbjct: 59661849 cctgtcctcttctgaccaaaga 59661870
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 421 atacattccaccgttgatctgggggaaaagcgggcacatccagacagccttgtatgggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59700050 atacattccaccgttgatctgggggaaaagcgggcacatccagacagccttgtatgggaa 59700109
Query: 481 gatgggaagggtgaggtcaccacacccgtatgggcaccggaagttcatcaccatgtccga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59700110 gatgggaagggtgaggtcaccacacccgtatgggcaccggaagttcatcaccatgtccga 59700169
Query: 541 tggagccacttcgacctttgacctcttcgaacccttggctgagcactgtgtgggag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59700170 tggagccacttcgacctttgacctcttcgaacccttggctgagcactgtgtgggag 59700225
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 595 agatgacgttaccatggtcatctgccctggaattgccaatcacagcgagaagcagtacat 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59703659 agatgacgttaccatggtcatctgccctggaattgccaatcacagcgagaagcagtacat 59703718
Query: 655 ccgcacctttgtcgactatgcccagaaaaatggctaccggtgcgctgtgctgaaccacct 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59703719 ccgcacctttgtcgactatgcccagaaaaatggctaccggtgcgctgtgctgaaccacct 59703778
Query: 715 gggcgccttgcctaacattgagctgacctcgccacgcatgttcacctacgg 765
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59703779 gggcgccttgcctaacattgagctgacctcgccacgcatgttcacctacgg 59703829
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 1 gttgcttgggcggggccggtagcggcgggagctgcactggccaggggttccggctgcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59631041 gttgcttgggcggggccggtagcggcgggagctgcactggccaggggttccggctgcatt 59631100
Query: 61 tccatgagcgccggcggcagcggcggagctgcggagactggactgagggcgagctgggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59631101 tccatgagcgccggcggcagcggcggagctgcggagactggactgagggcgagctgggcc 59631160
Query: 121 gctgtagtcaaccgcgctcaggt 143
|||||||||||||||||||||||
Sbjct: 59631161 gctgtagtcaaccgcgctcaggt 59631183
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 140 aggttaaattgaataagggatctgacctgactggcccagccatacaactcctcaagaaca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59658415 aggttaaattgaataagggatctgacctgactggcccagccatacaactcctcaagaaca 59658474
Query: 200 gttcatagtcacagtggagag 220
|||||||||||||||||||||
Sbjct: 59658475 gttcatagtcacagtggagag 59658495
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,533,536
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 6
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)