Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003125
(974 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103916.1| protein DGCR6 [Bos taurus]. 335 3e-92
>ref|NP_001103916.1| protein DGCR6 [Bos taurus].
Length = 198
Score = 335 bits (860), Expect = 3e-92
Identities = 177/198 (89%), Positives = 178/198 (89%)
Frame = +2
Query: 98 MERYAGALEEAMDGARQQERHYQLLSALQGLVKELPSSFQQRXXXXXXXXXXXXXXXGTV 277
MER +GALEEA DGARQQERHYQLLSALQGLVKELPSSFQQR GTV
Sbjct: 1 MERCSGALEEAADGARQQERHYQLLSALQGLVKELPSSFQQRLSYTTLSDLALALLDGTV 60
Query: 278 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 457
FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
Sbjct: 61 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 120
Query: 458 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELTLQMNLL 637
RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELTLQMNLL
Sbjct: 121 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELTLQMNLL 180
Query: 638 ELIRKLQQRGCQTGKAAL 691
ELIRKLQQRG Q GK AL
Sbjct: 181 ELIRKLQQRGRQAGKVAL 198
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,233,933
Number of extensions: 989960
Number of successful extensions: 5315
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5295
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003125
(974 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849993.1| PREDICTED: similar to DiGeorge syndrome critica... 335 4e-92
>ref|XP_849993.1| PREDICTED: similar to DiGeorge syndrome critical region protein 6
[Canis familiaris].
Length = 198
Score = 335 bits (859), Expect = 4e-92
Identities = 175/198 (88%), Positives = 177/198 (89%)
Frame = +2
Query: 98 MERYAGALEEAMDGARQQERHYQLLSALQGLVKELPSSFQQRXXXXXXXXXXXXXXXGTV 277
MERY GAL+EA+DGARQQERHYQLLSALQ LVKELPSSFQQR GTV
Sbjct: 1 MERYPGALDEAVDGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV 60
Query: 278 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 457
FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
Sbjct: 61 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 120
Query: 458 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELTLQMNLL 637
RELEAVEH IREEQRAMDQKIVLELDRKVADQQSTLEKAGVAG YVTTNPQELTLQMNLL
Sbjct: 121 RELEAVEHGIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGLYVTTNPQELTLQMNLL 180
Query: 638 ELIRKLQQRGCQTGKAAL 691
ELIRKLQQRGCQ GK AL
Sbjct: 181 ELIRKLQQRGCQAGKTAL 198
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,595,861
Number of extensions: 1009035
Number of successful extensions: 5297
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5279
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003125
(974 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005666.2| protein DGCR6 [Homo sapiens]. 337 7e-93
Alignment gi|NP_150282.2| protein DGCR6L [Homo sapiens]. 333 2e-91
>ref|NP_005666.2| protein DGCR6 [Homo sapiens].
Length = 220
Score = 337 bits (865), Expect = 7e-93
Identities = 177/198 (89%), Positives = 177/198 (89%)
Frame = +2
Query: 98 MERYAGALEEAMDGARQQERHYQLLSALQGLVKELPSSFQQRXXXXXXXXXXXXXXXGTV 277
MERYAGALEE DGARQQERHYQLLSALQ LVKELPSSFQQR GTV
Sbjct: 1 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV 60
Query: 278 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 457
FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
Sbjct: 61 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 120
Query: 458 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELTLQMNLL 637
RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQEL LQMNLL
Sbjct: 121 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL 180
Query: 638 ELIRKLQQRGCQTGKAAL 691
ELIRKLQQRGC GKAAL
Sbjct: 181 ELIRKLQQRGCWAGKAAL 198
>ref|NP_150282.2| protein DGCR6L [Homo sapiens].
Length = 220
Score = 333 bits (853), Expect = 2e-91
Identities = 173/198 (87%), Positives = 176/198 (88%)
Frame = +2
Query: 98 MERYAGALEEAMDGARQQERHYQLLSALQGLVKELPSSFQQRXXXXXXXXXXXXXXXGTV 277
MERYA ALEE DGARQQERHYQLLSALQ LVKELPSSFQQR GTV
Sbjct: 1 MERYAAALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV 60
Query: 278 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 457
FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPV+QAAQQ
Sbjct: 61 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVVQAAQQ 120
Query: 458 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELTLQMNLL 637
RELEAVEHRIREEQRAMDQKI+LELDRKVADQQSTLEKAGVAGFYVTTNPQEL LQMNLL
Sbjct: 121 RELEAVEHRIREEQRAMDQKIILELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL 180
Query: 638 ELIRKLQQRGCQTGKAAL 691
ELIRKLQQRGC+ G AAL
Sbjct: 181 ELIRKLQQRGCRAGNAAL 198
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,992,879
Number of extensions: 996019
Number of successful extensions: 4918
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4888
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003125
(974 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034177.1| protein DGCR6 [Mus musculus]. 270 2e-72
>ref|NP_034177.1| protein DGCR6 [Mus musculus].
Length = 170
Score = 270 bits (689), Expect = 2e-72
Identities = 140/162 (86%), Positives = 144/162 (88%)
Frame = +2
Query: 206 SSFQQRXXXXXXXXXXXXXXXGTVFEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQAL 385
SSFQQR GTVFEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQ L
Sbjct: 9 SSFQQRLSYTTLSDLALALLDGTVFEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQTL 68
Query: 386 RQKHQEAQQACRPHNLPVLQAAQQRELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTL 565
RQKH EAQQ+CRPHNLPVLQAAQQRELEA+EHRIREEQ+AMD+KIVLELDRKVADQQSTL
Sbjct: 69 RQKHLEAQQSCRPHNLPVLQAAQQRELEAMEHRIREEQQAMDRKIVLELDRKVADQQSTL 128
Query: 566 EKAGVAGFYVTTNPQELTLQMNLLELIRKLQQRGCQTGKAAL 691
EKAGVAGFYVTTNPQELTLQMNLLELIRKLQQRGCQ GKAAL
Sbjct: 129 EKAGVAGFYVTTNPQELTLQMNLLELIRKLQQRGCQVGKAAL 170
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,350,245
Number of extensions: 826271
Number of successful extensions: 4346
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4260
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003125
(974 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,771,538
Number of extensions: 640016
Number of successful extensions: 3245
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3235
Number of HSP's successfully gapped: 0
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003125
(974 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,391,914
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 0
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)