Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003129
(1241 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178072.2| bifunctional UDP-N-acetylglucosamine 2-epime... 478 e-135
Alignment gi|XP_002689762.1| PREDICTED: glucosamine (UDP-N-acetyl)-2-epim... 478 e-135
>ref|NP_001178072.2| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase [Bos taurus].
Length = 722
Score = 478 bits (1230), Expect = e-135
Identities = 244/275 (88%), Positives = 246/275 (89%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLR+PLSDT
Sbjct: 448 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRSPLSDT 507
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 508 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIVHQHELIHGSSFCAAEL 567
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL
Sbjct: 568 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 627
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSG+LASHYIHTVKDVIR
Sbjct: 628 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGILASHYIHTVKDVIRQQA 687
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
EPALLGAASMVLDYTTRRIY
Sbjct: 688 LSSVQDVDVVVSDLVEPALLGAASMVLDYTTRRIY 722
>ref|XP_002689762.1| PREDICTED: glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine
kinase [Bos taurus].
Length = 934
Score = 478 bits (1230), Expect = e-135
Identities = 244/275 (88%), Positives = 246/275 (89%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLR+PLSDT
Sbjct: 660 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRSPLSDT 719
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 720 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIVHQHELIHGSSFCAAEL 779
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL
Sbjct: 780 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 839
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSG+LASHYIHTVKDVIR
Sbjct: 840 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGILASHYIHTVKDVIRQQA 899
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
EPALLGAASMVLDYTTRRIY
Sbjct: 900 LSSVQDVDVVVSDLVEPALLGAASMVLDYTTRRIY 934
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,927,288
Number of extensions: 1426588
Number of successful extensions: 4774
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4768
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,207,134
Effective search space: 4375797272
Effective search space used: 4375797272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003129
(1241 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538729.2| PREDICTED: similar to Bifunctional UDP-N-acetyl... 463 e-130
>ref|XP_538729.2| PREDICTED: similar to Bifunctional UDP-N-acetylglucosamine
2-epimerase/N-acetylmannosamine kinase
(UDP-GlcNAc-2-epimerase/ManAc kinase) [Canis familiaris].
Length = 722
Score = 463 bits (1192), Expect = e-130
Identities = 236/274 (86%), Positives = 241/274 (87%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREG+VLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 448 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGVVLHSTKLIQEWNSVDLRTPLSDT 507
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 508 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 567
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLVEGMSVPKDEAV A+HL
Sbjct: 568 GHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVSAVHL 627
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGN KAQSILRTAGTALGLGVVNILHT+NPSLVILSGVLASHYIH VKDVIR
Sbjct: 628 IQAAKLGNVKAQSILRTAGTALGLGVVNILHTINPSLVILSGVLASHYIHIVKDVIRQQA 687
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRI 822
+PALLGAASMVLDYTTRRI
Sbjct: 688 LSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRI 721
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,020,832
Number of extensions: 1470025
Number of successful extensions: 5087
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5075
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 308
Effective length of database: 15,374,224
Effective search space: 4735260992
Effective search space used: 4735260992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003129
(1241 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177317.1| bifunctional UDP-N-acetylglucosamine 2-epime... 473 e-133
Alignment gi|NP_001177313.1| bifunctional UDP-N-acetylglucosamine 2-epime... 473 e-133
Alignment gi|NP_005467.1| bifunctional UDP-N-acetylglucosamine 2-epimeras... 473 e-133
Alignment gi|NP_001121699.1| bifunctional UDP-N-acetylglucosamine 2-epime... 473 e-133
Alignment gi|NP_001177312.1| bifunctional UDP-N-acetylglucosamine 2-epime... 291 1e-78
>ref|NP_001177317.1| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase isoform 3 [Homo sapiens].
Length = 717
Score = 473 bits (1217), Expect = e-133
Identities = 242/275 (88%), Positives = 244/275 (88%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 443 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 502
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 503 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 562
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLVEGMSVPKDEAVGALHL
Sbjct: 563 GHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHL 622
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIH VKDVIR
Sbjct: 623 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQA 682
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
+PALLGAASMVLDYTTRRIY
Sbjct: 683 LSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIY 717
>ref|NP_001177313.1| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase isoform 5 [Homo sapiens].
Length = 612
Score = 473 bits (1217), Expect = e-133
Identities = 242/275 (88%), Positives = 244/275 (88%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 338 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 397
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 398 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 457
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLVEGMSVPKDEAVGALHL
Sbjct: 458 GHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHL 517
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIH VKDVIR
Sbjct: 518 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQA 577
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
+PALLGAASMVLDYTTRRIY
Sbjct: 578 LSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIY 612
>ref|NP_005467.1| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase isoform 2 [Homo sapiens].
Length = 722
Score = 473 bits (1217), Expect = e-133
Identities = 242/275 (88%), Positives = 244/275 (88%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 448 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 507
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 508 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 567
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLVEGMSVPKDEAVGALHL
Sbjct: 568 GHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHL 627
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIH VKDVIR
Sbjct: 628 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQA 687
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
+PALLGAASMVLDYTTRRIY
Sbjct: 688 LSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIY 722
>ref|NP_001121699.1| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase isoform 1 [Homo sapiens].
Length = 753
Score = 473 bits (1217), Expect = e-133
Identities = 242/275 (88%), Positives = 244/275 (88%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 479 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 538
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 539 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 598
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLVEGMSVPKDEAVGALHL
Sbjct: 599 GHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHL 658
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIH VKDVIR
Sbjct: 659 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQA 718
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
+PALLGAASMVLDYTTRRIY
Sbjct: 719 LSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIY 753
>ref|NP_001177312.1| bifunctional UDP-N-acetylglucosamine
2-epimerase/N-acetylmannosamine kinase isoform 4 [Homo
sapiens].
Length = 648
Score = 291 bits (744), Expect = 1e-78
Identities = 149/171 (87%), Positives = 151/171 (88%)
Frame = +1
Query: 313 HQHELIHGSSFCAAELGHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLV 492
HQHELIHGSSFCAAELGH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLV
Sbjct: 478 HQHELIHGSSFCAAELGHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLV 537
Query: 493 EGMSVPKDEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVL 672
EGMSVPKDEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVL
Sbjct: 538 EGMSVPKDEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVL 597
Query: 673 ASHYIHTVKDVIRXXXXXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
ASHYIH VKDVIR +PALLGAASMVLDYTTRRIY
Sbjct: 598 ASHYIHIVKDVIRQQALSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIY 648
Score = 53.5 bits (127), Expect = 4e-07
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPRE 105
LILQMCVEAAAEAVKLNCRILGVGI GG ++ E
Sbjct: 448 LILQMCVEAAAEAVKLNCRILGVGIG-GGIIHQHE 481
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,149,375
Number of extensions: 1443883
Number of successful extensions: 4872
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4863
Number of HSP's successfully gapped: 6
Length of query: 413
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,835,944
Effective search space: 4569470752
Effective search space used: 4569470752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003129
(1241 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056643.3| bifunctional UDP-N-acetylglucosamine 2-epimeras... 464 e-131
Alignment gi|NP_001177343.1| bifunctional UDP-N-acetylglucosamine 2-epime... 464 e-131
>ref|NP_056643.3| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase isoform 2 [Mus musculus].
Length = 753
Score = 464 bits (1195), Expect = e-131
Identities = 236/275 (85%), Positives = 242/275 (88%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNP+EG+VLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 479 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPQEGVVLHSTKLIQEWNSVDLRTPLSDT 538
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAA+AERKFGQGKG ENFVTL HQHELIHGSSFCAAEL
Sbjct: 539 LHLPVWVDNDGNCAAMAERKFGQGKGQENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 598
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLVEGMSVPKDEAVGALHL
Sbjct: 599 GHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHL 658
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGN KAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIH VKDVIR
Sbjct: 659 IQAAKLGNVKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQA 718
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
+PALLGAASMVLDYTTRRI+
Sbjct: 719 LSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIH 753
>ref|NP_001177343.1| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase isoform 1 [Mus musculus].
Length = 722
Score = 464 bits (1195), Expect = e-131
Identities = 236/275 (85%), Positives = 242/275 (88%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNP+EG+VLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 448 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPQEGVVLHSTKLIQEWNSVDLRTPLSDT 507
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAA+AERKFGQGKG ENFVTL HQHELIHGSSFCAAEL
Sbjct: 508 LHLPVWVDNDGNCAAMAERKFGQGKGQENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 567
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GH+VVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDED LLVEGMSVPKDEAVGALHL
Sbjct: 568 GHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHL 627
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGN KAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIH VKDVIR
Sbjct: 628 IQAAKLGNVKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQA 687
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
+PALLGAASMVLDYTTRRI+
Sbjct: 688 LSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIH 722
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,266,064
Number of extensions: 1215368
Number of successful extensions: 4070
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4053
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 309
Effective length of database: 12,493,815
Effective search space: 3860588835
Effective search space used: 3860588835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003129
(1241 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161102.1| bifunctional UDP-N-acetylglucosamine 2-epime... 480 e-136
>ref|NP_001161102.1| bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine
kinase [Sus scrofa].
Length = 552
Score = 480 bits (1235), Expect = e-136
Identities = 246/275 (89%), Positives = 246/275 (89%)
Frame = +1
Query: 1 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 180
LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT
Sbjct: 278 LILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDT 337
Query: 181 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLXXXXXXXXXXXHQHELIHGSSFCAAEL 360
LHLPVWVDNDGNCAALAERKFGQGKGLENFVTL HQHELIHGSSFCAAEL
Sbjct: 338 LHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAEL 397
Query: 361 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 540
GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL
Sbjct: 398 GHIVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDQLLVEGMSVPKDEAVGALHL 457
Query: 541 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRXXX 720
IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIR
Sbjct: 458 IQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPSLVILSGVLASHYIHTVKDVIRQQA 517
Query: 721 XXXXXXXXXXXXXXXEPALLGAASMVLDYTTRRIY 825
EPALLGAASMVLDYTTRRIY
Sbjct: 518 LSSVQDVDVVVSDLVEPALLGAASMVLDYTTRRIY 552
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,801,093
Number of extensions: 918392
Number of successful extensions: 3072
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3070
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 312
Effective length of database: 8,829,335
Effective search space: 2754752520
Effective search space used: 2754752520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003129
(1241 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,101,407
Number of extensions: 192
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 0
Length of query: 1241
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1220
Effective length of database: 2,808,413,156
Effective search space: 3426264050320
Effective search space used: 3426264050320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)