Animal-Genome cDNA 20110601C-003138


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003138
         (682 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776771.1| 10 kDa heat shock protein, mitochondrial [Bos t...   169   2e-42

>ref|NP_776771.1| 10 kDa heat shock protein, mitochondrial [Bos taurus].
          Length = 102

 Score =  169 bits (429), Expect = 2e-42
 Identities = 87/97 (89%), Positives = 88/97 (90%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV         EIQPVSV
Sbjct: 6   FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66  KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 19,659,639
Number of extensions: 486926
Number of successful extensions: 954
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 128
Effective length of database: 14,405,662
Effective search space: 1843924736
Effective search space used: 1843924736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003138
         (682 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536017.2| PREDICTED: similar to heat shock 10kDa protein ...   169   2e-42
Alignment   gi|XP_852207.1| PREDICTED: similar to heat shock 10kDa protein ...   169   2e-42
Alignment   gi|XP_548793.2| PREDICTED: similar to butyrophilin-like 9 [Cani...   157   6e-39

>ref|XP_536017.2| PREDICTED: similar to heat shock 10kDa protein 1 (chaperonin 10)
           [Canis familiaris].
          Length = 102

 Score =  169 bits (429), Expect = 2e-42
 Identities = 87/97 (89%), Positives = 88/97 (90%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV         EIQPVSV
Sbjct: 6   FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66  KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


>ref|XP_852207.1| PREDICTED: similar to heat shock 10kDa protein 1 (chaperonin 10)
           [Canis familiaris].
          Length = 102

 Score =  169 bits (429), Expect = 2e-42
 Identities = 87/97 (89%), Positives = 88/97 (90%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV         EIQPVSV
Sbjct: 6   FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66  KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


>ref|XP_548793.2| PREDICTED: similar to butyrophilin-like 9 [Canis familiaris].
          Length = 634

 Score =  157 bits (398), Expect = 6e-39
 Identities = 82/94 (87%), Positives = 83/94 (88%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRKFLPLFD VLVERSAAETVTKGGIMLPEKSQGKV QATVVAV         EIQPVSV
Sbjct: 6   FRKFLPLFDWVLVERSAAETVTKGGIMLPEKSQGKVSQATVVAVGSGSKGKGGEIQPVSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGK 390
           KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGK
Sbjct: 66  KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGK 99


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 20,190,799
Number of extensions: 427661
Number of successful extensions: 947
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 128
Effective length of database: 15,574,240
Effective search space: 1993502720
Effective search space used: 1993502720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003138
         (682 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002148.1| 10 kDa heat shock protein, mitochondrial [Homo ...   169   2e-42
Alignment   gi|NP_001189414.1| HSPE1-PHOCN protein [Homo sapiens].                86   2e-17

>ref|NP_002148.1| 10 kDa heat shock protein, mitochondrial [Homo sapiens].
          Length = 102

 Score =  169 bits (429), Expect = 2e-42
 Identities = 87/97 (89%), Positives = 88/97 (90%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV         EIQPVSV
Sbjct: 6   FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66  KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


>ref|NP_001189414.1| HSPE1-PHOCN protein [Homo sapiens].
          Length = 261

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV 240
           FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV
Sbjct: 6   FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV 49


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 19,808,422
Number of extensions: 415996
Number of successful extensions: 1117
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 128
Effective length of database: 15,033,728
Effective search space: 1924317184
Effective search space used: 1924317184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003138
         (682 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032329.1| 10 kDa heat shock protein, mitochondrial [Mus m...   166   1e-41
Alignment   gi|XP_003086191.1| PREDICTED: 10 kDa heat shock protein, mitoch...   144   6e-35
Alignment   gi|XP_893532.2| PREDICTED: 10 kDa heat shock protein, mitochond...   138   4e-33

>ref|NP_032329.1| 10 kDa heat shock protein, mitochondrial [Mus musculus].
          Length = 102

 Score =  166 bits (420), Expect = 1e-41
 Identities = 85/97 (87%), Positives = 87/97 (89%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV         EI+PVSV
Sbjct: 6   FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKVLLPEYGGT+VVLDDKDYFLFRD DILGKYVD
Sbjct: 66  KVGDKVLLPEYGGTKVVLDDKDYFLFRDSDILGKYVD 102


>ref|XP_003086191.1| PREDICTED: 10 kDa heat shock protein, mitochondrial-like [Mus
           musculus].
          Length = 102

 Score =  144 bits (363), Expect = 6e-35
 Identities = 74/97 (76%), Positives = 81/97 (83%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRK LPLFDRVLVERS+ ETVTKG IMLPEKSQGKVLQA V+A+         EI+P SV
Sbjct: 6   FRKLLPLFDRVLVERSSTETVTKGFIMLPEKSQGKVLQAMVMALESGRKGKGGEIEPDSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKVLLPEYGGT++VLDDKD+FLFRD DIL KYVD
Sbjct: 66  KVGDKVLLPEYGGTKLVLDDKDHFLFRDSDILRKYVD 102


>ref|XP_893532.2| PREDICTED: 10 kDa heat shock protein, mitochondrial-like [Mus
           musculus].
          Length = 101

 Score =  138 bits (347), Expect = 4e-33
 Identities = 73/97 (75%), Positives = 80/97 (82%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRK LPLFDRVLVERS+ ETVTKG IMLPEKSQGKVLQA V+A+         EI+P SV
Sbjct: 6   FRKLLPLFDRVLVERSSTETVTKGFIMLPEKSQGKVLQAMVMALESGRKGKGGEIEPDSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKV LPEYGGT++VLDDKD+FLFRD DIL KYVD
Sbjct: 66  KVGDKV-LPEYGGTKLVLDDKDHFLFRDSDILRKYVD 101


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 17,015,221
Number of extensions: 360325
Number of successful extensions: 813
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 129
Effective length of database: 12,674,031
Effective search space: 1634949999
Effective search space used: 1634949999
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003138
         (682 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999472.1| 10 kDa heat shock protein, mitochondrial [Sus s...   169   1e-42

>ref|NP_999472.1| 10 kDa heat shock protein, mitochondrial [Sus scrofa].
          Length = 102

 Score =  169 bits (429), Expect = 1e-42
 Identities = 87/97 (89%), Positives = 88/97 (90%)
 Frame = +1

Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
           FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV         EIQPVSV
Sbjct: 6   FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65

Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
           KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66  KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,308,721
Number of extensions: 423093
Number of successful extensions: 546
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,978,717
Effective search space: 1185190644
Effective search space used: 1185190644
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003138
         (682 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         660   0.0  
Sscrofa_Chr14                                                         638   0.0  
Sscrofa_Chr09                                                         579   e-163
Sscrofa_Chr15                                                         494   e-137
gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183      343   8e-92
Sscrofa_Chr13                                                         216   1e-53
Sscrofa_Chr05                                                         188   3e-45
Sscrofa_Chr01                                                          96   3e-17

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  660 bits (333), Expect = 0.0
 Identities = 507/561 (90%), Gaps = 3/561 (0%)
 Strand = Plus / Plus

                                                                            
Query: 39       aggtctttccttgcggcggcttgagagcaggctagcagttgcggtggccggggtcatggc 98
                ||||||||||||| |||||| |||||||||  |||||  || ||||||||| ||||||||
Sbjct: 54240805 aggtctttccttggggcggcgtgagagcagagtagcacctgtggtggccggagtcatggc 54240864

                                                                            
Query: 99       aggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaagtgc 158
                 ||||| ||||||||||||| || |||||||||||| ||| |||||| ||||||||| ||
Sbjct: 54240865 gggacaggcatttagaaagtgtcgtcctctctttgaccgaatattaggtgaaagaagggc 54240924

                                                                            
Query: 159      agctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagtatt 218
                |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct: 54240925 agctgaaacggtaaccaaaggaagcattgtgcttccagaaaaatctcaaggaaaagtctt 54240984

                                                                            
Query: 219      gcaagcaaccgtagtagctgttggatcaggctctaaaggaaagggtggagagattcaacc 278
                |||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 54240985 gcaagcgaca-tagtagctgttggatcaggctctaaaggaaagggtggagggattcagcc 54241043

                                                                            
Query: 279      agttagtgtcaaagttggagataaagttcttctgccagaatatggaggcaccagagtagt 338
                |||  |||| ||||| |||||||||| |||||||||||| | |||||||||||  |||||
Sbjct: 54241044 agtcggtgtgaaagtcggagataaaggtcttctgccagattttggaggcaccaaggtagt 54241103

                                                                            
Query: 339      tctggatgacaaggattatttcttatttagagatggtgacattcttggaaaatacgtaga 398
                |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 54241104 tctggatgacaaggattatttcttatttagagatggtggcattcttggaaaataggcaga 54241163

                                                                            
Query: 399      ctgaaacaagtcactgtc-taatggcatcacatgaagctgcccccattccactgaagttc 457
                |||||| |||||||||||  |||||| ||||||||||||| |||| ||||||||||||||
Sbjct: 54241164 ctgaaataagtcactgtcgaaatggcgtcacatgaagctg-cccctttccactgaagttc 54241222

                                                                            
Query: 458      tgagatcttttcatcatgtaaataatttcaatgtctgtcttttataataaactaatgata 517
                ||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||| ||
Sbjct: 54241223 tgagatcttttcatcctataaataatttccatgtctgtcttttataataagctaatgcta 54241282

                                                                            
Query: 518      tccaaactgatgacatccagtgcttctaaaatttagtttcactgtaccgatgtacacatt 577
                |||||||||||||||||||||| ||| |||||||||||||||||||| ||| || |||||
Sbjct: 54241283 tccaaactgatgacatccagtgtttccaaaatttagtttcactgtactgatatagacatt 54241342

                                     
Query: 578      tacaaataaaaatatataaat 598
                | ||| |||||||||||||||
Sbjct: 54241343 tccaactaaaaatatataaat 54241363



 Score =  343 bits (173), Expect = 8e-92
 Identities = 340/392 (86%), Gaps = 4/392 (1%)
 Strand = Plus / Plus

                                                                            
Query: 112      agaaagtttcttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggta 171
                |||||||||||| |||||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 22847698 agaaagtttctttctctctttgaccgggtcttagttgaaagaagtgcagctgaaactgta 22847757

                                                                            
Query: 172      accaaaggaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgta 231
                | ||||||| ||||| ||   |||||||||||||||||||||||| |||||| ||| | |
Sbjct: 22847758 atcaaaggatgcattctgtacccagaaaaatctcaaggaaaagtactgcaaggaacagca 22847817

                                                                            
Query: 232      gtagctgttggatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaa 291
                ||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||| |||
Sbjct: 22847818 gtagctgttggatcaggctctgaaggaaagggtggagagagtcaacaagtt-gtgtgaaa 22847876

                                                                            
Query: 292      gttggagataaagttcttctgccagaatatggaggcaccagagtagttctggatgacaag 351
                 ||||| |||||||||||||| ||||| |||||||| ||| || ||||||||| ||||||
Sbjct: 22847877 cttggaaataaagttcttctgtcagaacatggaggctccaaagcagttctggacgacaag 22847936

                                                                            
Query: 352      gattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagtca 411
                |||||||||||| |||||| ||||||  | || ||||| || |||| |||||| ||| ||
Sbjct: 22847937 gattatttcttacttagagctggtgatgtcctcggaaagtatgtaggctgaaataagcca 22847996

                                                                            
Query: 412      c-tgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttca 470
                |   |  ||||||||||| ||||||||  |||||||||||||||||||||||||||||||
Sbjct: 22847997 cgattgaaatggcatcacctgaagctg--cccattccactgaagttctgagatcttttca 22848054

                                                
Query: 471      tcatgtaaataatttcaatgtctgtcttttat 502
                |||||||| ||||||  ||| || ||||||||
Sbjct: 22848055 tcatgtaattaatttttatgcctctcttttat 22848086


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  638 bits (322), Expect = 0.0
 Identities = 452/491 (92%), Gaps = 7/491 (1%)
 Strand = Plus / Plus

                                                                             
Query: 39        aggtctttccttgcggcggcttgagagcaggctagcagttgcggtggccggggtcatggc 98
                 ||||||||||||| |||||| |||||||||  |||||| || ||||| | | ||||| ||
Sbjct: 120712230 aggtctttccttgtggcggcgtgagagcagagtagcagctgtggtggtcagagtcatagc 120712289

                                                                             
Query: 99        aggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaagtgc 158
                 |||||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||
Sbjct: 120712290 aggacaggcatttagaaagtttcttcctctctttgacggagtattagttcaaagaagtgc 120712349

                                                                             
Query: 159       agctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagtatt 218
                 ||||||||| |||||||||||||||||||||||| |||||||||||  |||| || ||||
Sbjct: 120712350 agctgaaacagtaaccaaaggaggcattatgctttcagaaaaatcttgaggacaaatatt 120712409

                                                                             
Query: 219       gcaagcaaccgtagtagctgttggatcaggctctaaaggaaagggtggagagattcaacc 278
                 ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 120712410 gcaagcagcagtagtagctattggatcaggctctaaaggaaagggtggagagattcaacc 120712469

                                                                             
Query: 279       agttagtgtcaaagttggagataaagttcttctgccagaatatggaggcaccagagtagt 338
                 |||||| || ||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 120712470 agttagcgtgaaagttggagataaagttcttctgccagattatagaggcaccaaagtagt 120712529

                                                                             
Query: 339       tctggatgacaaggattatttcttatttagagatggtgacattcttggaaaatacgtaga 398
                 ||||||||||||||||||||||    |||||||||||||||||||||||||||| |||||
Sbjct: 120712530 tctggatgacaaggattatttc----ttagagatggtgacattcttggaaaatatgtaga 120712585

                                                                             
Query: 399       ctg-aaacaagtcactgtc-taatggcatcacatgaagctgcccccattccactgaagtt 456
                 ||| ||| |||||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 120712586 ctgaaaataagtcactgtcaaaatggcatcacatgaagctg-ccccattccactgaagtt 120712644

                                                                             
Query: 457       ctgagatcttttcatcatgtaaataatttcaatgtctgtcttttataataaactaatgat 516
                 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 120712645 ctgagatcttttcatcatgtaaataatttccatgtctgtcttttataataaactaatgat 120712704

                            
Query: 517       atccaaactga 527
                 |||||||||||
Sbjct: 120712705 atccaaactga 120712715



 Score =  373 bits (188), Expect = e-101
 Identities = 330/375 (88%), Gaps = 3/375 (0%)
 Strand = Plus / Plus

                                                                           
Query: 140     tattagttgaaagaagtgcagctgaaacggtaaccaaaggaggcattatgcttccagaaa 199
               ||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 2478693 tattagttgaaagaagttcagctgaaactgcaaccaaaggaggcattatgcttccagaaa 2478752

                                                                           
Query: 200     aatctcaaggaaaagtattgcaagcaaccgtagtagctgttggatcaggctctaaaggaa 259
               ||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||| |
Sbjct: 2478753 aatctcaaggaaaagtactgcaagcaacagtagtagctgttggatagggctctaaaggga 2478812

                                                                           
Query: 260     agggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaat 319
               ||||||| |||||||||||| ||||  | ||||||||||||||  ||| ||| |||||||
Sbjct: 2478813 agggtggtgagattcaaccaattagcatgaaagttggagataagtttcctctcccagaat 2478872

                                                                           
Query: 320     atggaggcaccagagtagttctggatgacaaggattatttcttatttagagatggtgaca 379
               || | |||||||  ||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct: 2478873 atagcggcaccaaggtagttctggatgacaaggattagttcttacttagacatggtgaca 2478932

                                                                           
Query: 380     ttcttggaaaatacgtagactgaaacaagtcac-tgtctaatggcatcacatgaagctgc 438
               ||||||||||||| | ||||||||| ||||||| | |  ||||||||||||| |||||| 
Sbjct: 2478933 ttcttggaaaatatgcagactgaaataagtcacttttgaaatggcatcacataaagctg- 2478991

                                                                           
Query: 439     ccccattccactgaagttctgagatcttttcatcatgtaaataatttcaatgtctgtctt 498
                || ||||||||||  |||||| ||||||||||||||||||||| ||  |||||| ||| 
Sbjct: 2478992 -cctattccactgacattctgaaatcttttcatcatgtaaataactttcatgtctctcta 2479050

                              
Query: 499     ttataataaactaat 513
               | || ||||||||||
Sbjct: 2479051 tcatgataaactaat 2479065



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                           
Query: 91      gtcatggcaggacaagcatttagaaagtttcttcctctctttga 134
               ||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 2478377 gtcatggcaggacagaaatttagaaagtttcttcctctctttga 2478420


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  579 bits (292), Expect = e-163
 Identities = 439/483 (90%), Gaps = 5/483 (1%)
 Strand = Plus / Minus

                                                                            
Query: 81       ggtggccggggtcatggcaggacaagcatttagaaagtttcttcctctctttgatcgagt 140
                ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||  ||||
Sbjct: 67756007 ggtggccggagtcatggcaggacaggcatttagaaagtttcttcttctctttgactgagt 67755948

                                                                            
Query: 141      attagttgaaagaagtgcagctgaaacggtaaccaaaggaggcattatgcttccagaaaa 200
                |||||||||||||  || | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 67755947 attagttgaaagacatgtacctgaaactgtaaccaaaggaggcattatgctttcagaaaa 67755888

                                                                            
Query: 201      atctcaaggaaaagtattgcaagcaaccgtagtagctgttggatcaggctctaaaggaaa 260
                ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 67755887 atctcaaggaaaagtgttgcaagcaacagtagcagctgttggatcaggctctaaaggaaa 67755828

                                                                            
Query: 261      gggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaata 320
                 ||||||||||||  |||||||||  | ||||||||||||||||| |||||||||| |||
Sbjct: 67755827 -ggtggagagatttgaccagttagcatgaaagttggagataaagtccttctgccaggata 67755769

                                                                            
Query: 321      tggaggcaccagagtagttctggatgacaaggattatttcttatttagagatggtgacat 380
                ||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 67755768 tggaggcaccaaagtagttctggatgacaaggatcatttattatttagaaatggtgacat 67755709

                                                                            
Query: 381      tcttggaaaatacgtagactgaaacaagtcact-gtctaatggcatcacatgaagctgcc 439
                |||||||||||| || |||||||| ||||||||  |  |||| |||||||||||||||  
Sbjct: 67755708 tcttggaaaatatgtggactgaaataagtcactattgaaatgccatcacatgaagctg-- 67755651

                                                                            
Query: 440      cccattccactgaagttctgagatcttttcatcatgtaaataatttcaatgtctgtcttt 499
                |||||||||||||||||||| |||| ||||||| |  |||||||||| |||| |||||||
Sbjct: 67755650 cccattccactgaagttctgcgatcatttcatcct-caaataatttccatgtttgtcttt 67755592

                                                                            
Query: 500      tataataaactaatgatatccaaactgatgacatccagtgcttctaaaatttagtttcac 559
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67755591 tataataaactaatgatatccaaactgatgacatccagtgtttctaaaatttagtttcac 67755532

                   
Query: 560      tgt 562
                |||
Sbjct: 67755531 tgt 67755529


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  494 bits (249), Expect = e-137
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                             
Query: 350       aggattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagt 409
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112549998 aggattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagt 112550057

                                                                             
Query: 410       cactgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttc 469
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112550058 cactgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttc 112550117

                                                                             
Query: 470       atcatgtaaataatttcaatgtctgtcttttataataaactaatgatatccaaactgatg 529
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112550118 atcatgtaaataatttcaatgtctgtcttttataataaactaatgatatccaaactgatg 112550177

                                                                             
Query: 530       acatccagtgcttctaaaatttagtttcactgtaccgatgtacacatttacaaataaaaa 589
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112550178 acatccagtgcttctaaaatttagtttcactgtaccgatgtacacatttacaaataaaaa 112550237

                          
Query: 590       tatataaat 598
                 |||||||||
Sbjct: 112550238 tatataaat 112550246



 Score =  484 bits (244), Expect = e-134
 Identities = 322/348 (92%)
 Strand = Plus / Minus

                                                                           
Query: 2       cttttcccgagttcacgtggacggagggcagtactgcaggtctttccttgcggcggcttg 61
               |||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||  ||
Sbjct: 1975866 cttttcccgagttcacgtggacagaggacagtactgcaggtctttccttgcaggggtgtg 1975807

                                                                           
Query: 62      agagcaggctagcagttgcggtggccggggtcatggcaggacaagcatttagaaagtttc 121
               |||||||  |||||  || || | | || |||||||||||||| ||||||||||||||||
Sbjct: 1975806 agagcagagtagcaactgtggggtctggagtcatggcaggacaggcatttagaaagtttc 1975747

                                                                           
Query: 122     ttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggtaaccaaaggag 181
               ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1975746 ttcctctctttgatcgactattagttgaaagaagtgcagctgaaatggtaaccaaaggag 1975687

                                                                           
Query: 182     gcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctgttg 241
               |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 1975686 gcattatgcttctagaaaaatctcaaggaaaagtattgcaagcaacagtagtagctattg 1975627

                                                                           
Query: 242     gatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaagttggagata 301
               |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 1975626 gatcaggctctaaaggaaagggtggaaagatttaaccagttagtgtgaaagttggagata 1975567

                                                               
Query: 302     aagttcttctgccagaatatggaggcaccagagtagttctggatgaca 349
               || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1975566 aatttcttctgccagaatatggaggcaccaaagtagttctggatgaca 1975519



 Score =  331 bits (167), Expect = 3e-88
 Identities = 167/167 (100%)
 Strand = Plus / Plus

                                                                             
Query: 96        ggcaggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaag 155
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548711 ggcaggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaag 112548770

                                                                             
Query: 156       tgcagctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagt 215
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548771 tgcagctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagt 112548830

                                                                
Query: 216       attgcaagcaaccgtagtagctgttggatcaggctctaaaggaaagg 262
                 |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548831 attgcaagcaaccgtagtagctgttggatcaggctctaaaggaaagg 112548877



 Score =  190 bits (96), Expect = 7e-46
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                             
Query: 2         cttttcccgagttcacgtggacggagggcagtactgcaggtctttccttgcggcggcttg 61
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548090 cttttcccgagttcacgtggacggagggcagtactgcaggtctttccttgcggcggcttg 112548149

                                                     
Query: 62        agagcaggctagcagttgcggtggccggggtcatgg 97
                 ||||||||||||||||||||||||||||||||||||
Sbjct: 112548150 agagcaggctagcagttgcggtggccggggtcatgg 112548185



 Score =  186 bits (94), Expect = 1e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                             
Query: 259       aagggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaa 318
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112549830 aagggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaa 112549889

                                                   
Query: 319       tatggaggcaccagagtagttctggatgacaagg 352
                 ||||||||||||||||||||||||||||||||||
Sbjct: 112549890 tatggaggcaccagagtagttctggatgacaagg 112549923


>gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183
          Length = 88797

 Score =  343 bits (173), Expect = 8e-92
 Identities = 340/392 (86%), Gaps = 4/392 (1%)
 Strand = Plus / Minus

                                                                         
Query: 112   agaaagtttcttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggta 171
             |||||||||||| |||||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 34294 agaaagtttctttctctctttgaccgggtcttagttgaaagaagtgcagctgaaactgta 34235

                                                                         
Query: 172   accaaaggaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgta 231
             | ||||||| ||||| ||   |||||||||||||||||||||||| |||||| ||| | |
Sbjct: 34234 atcaaaggatgcattctgtacccagaaaaatctcaaggaaaagtactgcaaggaacagca 34175

                                                                         
Query: 232   gtagctgttggatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaa 291
             ||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||| |||
Sbjct: 34174 gtagctgttggatcaggctctgaaggaaagggtggagagagtcaacaagtt-gtgtgaaa 34116

                                                                         
Query: 292   gttggagataaagttcttctgccagaatatggaggcaccagagtagttctggatgacaag 351
              ||||| |||||||||||||| ||||| |||||||| ||| || ||||||||| ||||||
Sbjct: 34115 cttggaaataaagttcttctgtcagaacatggaggctccaaagcagttctggacgacaag 34056

                                                                         
Query: 352   gattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagtca 411
             |||||||||||| |||||| ||||||  | || ||||| || |||| |||||| ||| ||
Sbjct: 34055 gattatttcttacttagagctggtgatgtcctcggaaagtatgtaggctgaaataagcca 33996

                                                                         
Query: 412   c-tgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttca 470
             |   |  ||||||||||| ||||||||  |||||||||||||||||||||||||||||||
Sbjct: 33995 cgattgaaatggcatcacctgaagctg--cccattccactgaagttctgagatcttttca 33938

                                             
Query: 471   tcatgtaaataatttcaatgtctgtcttttat 502
             |||||||| ||||||  ||| || ||||||||
Sbjct: 33937 tcatgtaattaatttttatgcctctcttttat 33906


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  216 bits (109), Expect = 1e-53
 Identities = 225/261 (86%), Gaps = 2/261 (0%)
 Strand = Plus / Plus

                                                                             
Query: 118       tttcttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggtaaccaaa 177
                 ||||||||  ||| |||| || |||| |||||||||||| ||||||||||  ||||||||
Sbjct: 149893452 tttcttcccttctctgatggaatattggttgaaagaagttcagctgaaactataaccaaa 149893511

                                                                             
Query: 178       ggaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagct 237
                 | ||| ||||  |||||||||||||||||||| |||||||||||||  || |||| || |
Sbjct: 149893512 gaaggtattacacttccagaaaaatctcaagggaaagtattgcaagtgacagtagcagtt 149893571

                                                                             
Query: 238       gttggatcaggctctaaaggaaagggtggagagattcaaccagttagtgt-caaagttgg 296
                 | ||||||||| |  ||||||||||||||||| ||||||||||||||| |  ||| ||||
Sbjct: 149893572 gctggatcaggttagaaaggaaagggtggagaaattcaaccagttagtttggaaaattgg 149893631

                                                                             
Query: 297       agataaagttcttctgccagaatatggaggcaccagagtagttctggatgacaaggatta 356
                 | ||||| ||||||| |||||||||||||| | || ||||||||| ||||||||| ||||
Sbjct: 149893632 aaataaaattcttctcccagaatatggaggta-caaagtagttctagatgacaagaatta 149893690

                                      
Query: 357       tttcttatttagagatggtga 377
                 |||||||||||||||||||||
Sbjct: 149893691 tttcttatttagagatggtga 149893711


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  188 bits (95), Expect = 3e-45
 Identities = 143/159 (89%)
 Strand = Plus / Minus

                                                                            
Query: 180      aggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctgt 239
                ||||||||||||||||||||||||||||||||||||||| |||||||| |||| |  |||
Sbjct: 15570575 aggcattatgcttccagaaaaatctcaaggaaaagtattacaagcaacagtagaaaatgt 15570516

                                                                            
Query: 240      tggatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaagttggaga 299
                |||||||| |||||||||||| |||||||||||||||| |||||   | |||| ||||||
Sbjct: 15570515 tggatcagtctctaaaggaaatggtggagagattcaacaagttaacctgaaagctggaga 15570456

                                                       
Query: 300      taaagttcttctgccagaatatggaggcaccagagtagt 338
                |||||||||||| ||||||||||||||||| | ||||||
Sbjct: 15570455 taaagttcttctcccagaatatggaggcactaaagtagt 15570417



 Score =  133 bits (67), Expect = 1e-28
 Identities = 108/119 (90%), Gaps = 2/119 (1%)
 Strand = Plus / Minus

                                                                            
Query: 445      tccactgaagttctgagatcttttcatcatgtaaataatttcaatgtctgtcttttataa 504
                |||||||||||||||| |||||| | |||||||||||||||| || ||| || |||||||
Sbjct: 15569791 tccactgaagttctgaaatctttcc-tcatgtaaataatttccatatctctcctttataa 15569733

                                                                           
Query: 505      taaactaatgatatccaaactgatgacatccagtgcttctaaaatttagtttcactgta 563
                ||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||
Sbjct: 15569732 taaactaatgata-ccaaactaatgacatccagtgtgtctaaaatttagtttcactgta 15569675



 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 358      ttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagtcact 413
                |||||||||||||||| ||||||||||||||| || ||||||||||| || |||||
Sbjct: 15569968 ttcttatttagagatgatgacattcttggaaagtatgtagactgaaataaatcact 15569913


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 170/207 (82%), Gaps = 4/207 (1%)
 Strand = Plus / Plus

                                                                            
Query: 179      gaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctg 238
                |||||||||||| ||||||||| ||||| ||||||||| |||| |  |||  ||||||| 
Sbjct: 33783827 gaggcattatgcgtccagaaaattctcagggaaaagtactgcatgtgacctgagtagctt 33783886

                                                                            
Query: 239      ttggatcaggctctaaaggaaagggtg--gagagattcaaccagttagtgtcaaagttgg 296
                 || ||  ||||||||| || ||||||  |||| ||| ||||||||||  | ||||||||
Sbjct: 33783887 ctgaattgggctctaaaagagagggtgaagagatatttaaccagttagcatgaaagttgg 33783946

                                                                            
Query: 297      agataaa-gttcttctgccagaatatggaggcaccagagtagttctggatgacaaggatt 355
                | ||||| |||||||| ||||||||   ||||| || ||||||||| |||||||||| ||
Sbjct: 33783947 aaataaacgttcttcttccagaataccaaggcaacacagtagttctagatgacaagggtt 33784006

                                           
Query: 356      atttcttatttagagatggtgacattc 382
                 |||||| ||| ||| |||||||||||
Sbjct: 33784007 ctttctt-ttttgagctggtgacattc 33784032



 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 170/207 (82%), Gaps = 4/207 (1%)
 Strand = Plus / Plus

                                                                            
Query: 179      gaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctg 238
                |||||||||||| ||||||||| ||||| ||||||||| |||| |  |||  ||||||| 
Sbjct: 50667904 gaggcattatgcgtccagaaaattctcagggaaaagtactgcatgtgacctgagtagctt 50667963

                                                                            
Query: 239      ttggatcaggctctaaaggaaagggtg--gagagattcaaccagttagtgtcaaagttgg 296
                 || ||  ||||||||| || ||||||  |||| ||| ||||||||||  | ||||||||
Sbjct: 50667964 ctgaattgggctctaaaagagagggtgaagagatatttaaccagttagcatgaaagttgg 50668023

                                                                            
Query: 297      agataaa-gttcttctgccagaatatggaggcaccagagtagttctggatgacaaggatt 355
                | ||||| |||||||| ||||||||   ||||| || ||||||||| |||||||||| ||
Sbjct: 50668024 aaataaacgttcttcttccagaataccaaggcaacacagtagttctagatgacaagggtt 50668083

                                           
Query: 356      atttcttatttagagatggtgacattc 382
                 |||||| ||| ||| |||||||||||
Sbjct: 50668084 ctttctt-ttttgagctggtgacattc 50668109


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,528,531
Number of extensions: 854
Number of successful extensions: 854
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 22
Length of query: 682
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 661
Effective length of database: 2,808,413,156
Effective search space: 1856361096116
Effective search space used: 1856361096116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)