Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003138
(682 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776771.1| 10 kDa heat shock protein, mitochondrial [Bos t... 169 2e-42
>ref|NP_776771.1| 10 kDa heat shock protein, mitochondrial [Bos taurus].
Length = 102
Score = 169 bits (429), Expect = 2e-42
Identities = 87/97 (89%), Positives = 88/97 (90%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV EIQPVSV
Sbjct: 6 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66 KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 19,659,639
Number of extensions: 486926
Number of successful extensions: 954
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 128
Effective length of database: 14,405,662
Effective search space: 1843924736
Effective search space used: 1843924736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003138
(682 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536017.2| PREDICTED: similar to heat shock 10kDa protein ... 169 2e-42
Alignment gi|XP_852207.1| PREDICTED: similar to heat shock 10kDa protein ... 169 2e-42
Alignment gi|XP_548793.2| PREDICTED: similar to butyrophilin-like 9 [Cani... 157 6e-39
>ref|XP_536017.2| PREDICTED: similar to heat shock 10kDa protein 1 (chaperonin 10)
[Canis familiaris].
Length = 102
Score = 169 bits (429), Expect = 2e-42
Identities = 87/97 (89%), Positives = 88/97 (90%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV EIQPVSV
Sbjct: 6 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66 KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
>ref|XP_852207.1| PREDICTED: similar to heat shock 10kDa protein 1 (chaperonin 10)
[Canis familiaris].
Length = 102
Score = 169 bits (429), Expect = 2e-42
Identities = 87/97 (89%), Positives = 88/97 (90%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV EIQPVSV
Sbjct: 6 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66 KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
>ref|XP_548793.2| PREDICTED: similar to butyrophilin-like 9 [Canis familiaris].
Length = 634
Score = 157 bits (398), Expect = 6e-39
Identities = 82/94 (87%), Positives = 83/94 (88%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRKFLPLFD VLVERSAAETVTKGGIMLPEKSQGKV QATVVAV EIQPVSV
Sbjct: 6 FRKFLPLFDWVLVERSAAETVTKGGIMLPEKSQGKVSQATVVAVGSGSKGKGGEIQPVSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGK 390
KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGK
Sbjct: 66 KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGK 99
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 20,190,799
Number of extensions: 427661
Number of successful extensions: 947
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 128
Effective length of database: 15,574,240
Effective search space: 1993502720
Effective search space used: 1993502720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003138
(682 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002148.1| 10 kDa heat shock protein, mitochondrial [Homo ... 169 2e-42
Alignment gi|NP_001189414.1| HSPE1-PHOCN protein [Homo sapiens]. 86 2e-17
>ref|NP_002148.1| 10 kDa heat shock protein, mitochondrial [Homo sapiens].
Length = 102
Score = 169 bits (429), Expect = 2e-42
Identities = 87/97 (89%), Positives = 88/97 (90%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV EIQPVSV
Sbjct: 6 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66 KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
>ref|NP_001189414.1| HSPE1-PHOCN protein [Homo sapiens].
Length = 261
Score = 86.3 bits (212), Expect = 2e-17
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV 240
FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV
Sbjct: 6 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV 49
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 19,808,422
Number of extensions: 415996
Number of successful extensions: 1117
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 128
Effective length of database: 15,033,728
Effective search space: 1924317184
Effective search space used: 1924317184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003138
(682 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032329.1| 10 kDa heat shock protein, mitochondrial [Mus m... 166 1e-41
Alignment gi|XP_003086191.1| PREDICTED: 10 kDa heat shock protein, mitoch... 144 6e-35
Alignment gi|XP_893532.2| PREDICTED: 10 kDa heat shock protein, mitochond... 138 4e-33
>ref|NP_032329.1| 10 kDa heat shock protein, mitochondrial [Mus musculus].
Length = 102
Score = 166 bits (420), Expect = 1e-41
Identities = 85/97 (87%), Positives = 87/97 (89%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV EI+PVSV
Sbjct: 6 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKVLLPEYGGT+VVLDDKDYFLFRD DILGKYVD
Sbjct: 66 KVGDKVLLPEYGGTKVVLDDKDYFLFRDSDILGKYVD 102
>ref|XP_003086191.1| PREDICTED: 10 kDa heat shock protein, mitochondrial-like [Mus
musculus].
Length = 102
Score = 144 bits (363), Expect = 6e-35
Identities = 74/97 (76%), Positives = 81/97 (83%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRK LPLFDRVLVERS+ ETVTKG IMLPEKSQGKVLQA V+A+ EI+P SV
Sbjct: 6 FRKLLPLFDRVLVERSSTETVTKGFIMLPEKSQGKVLQAMVMALESGRKGKGGEIEPDSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKVLLPEYGGT++VLDDKD+FLFRD DIL KYVD
Sbjct: 66 KVGDKVLLPEYGGTKLVLDDKDHFLFRDSDILRKYVD 102
>ref|XP_893532.2| PREDICTED: 10 kDa heat shock protein, mitochondrial-like [Mus
musculus].
Length = 101
Score = 138 bits (347), Expect = 4e-33
Identities = 73/97 (75%), Positives = 80/97 (82%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRK LPLFDRVLVERS+ ETVTKG IMLPEKSQGKVLQA V+A+ EI+P SV
Sbjct: 6 FRKLLPLFDRVLVERSSTETVTKGFIMLPEKSQGKVLQAMVMALESGRKGKGGEIEPDSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKV LPEYGGT++VLDDKD+FLFRD DIL KYVD
Sbjct: 66 KVGDKV-LPEYGGTKLVLDDKDHFLFRDSDILRKYVD 101
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 17,015,221
Number of extensions: 360325
Number of successful extensions: 813
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 129
Effective length of database: 12,674,031
Effective search space: 1634949999
Effective search space used: 1634949999
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003138
(682 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999472.1| 10 kDa heat shock protein, mitochondrial [Sus s... 169 1e-42
>ref|NP_999472.1| 10 kDa heat shock protein, mitochondrial [Sus scrofa].
Length = 102
Score = 169 bits (429), Expect = 1e-42
Identities = 87/97 (89%), Positives = 88/97 (90%)
Frame = +1
Query: 109 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVXXXXXXXXXEIQPVSV 288
FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAV EIQPVSV
Sbjct: 6 FRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSV 65
Query: 289 KVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD 399
KVGDKVLLPEYGGT+VVLDDKDYFLFRDGDILGKYVD
Sbjct: 66 KVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,308,721
Number of extensions: 423093
Number of successful extensions: 546
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,978,717
Effective search space: 1185190644
Effective search space used: 1185190644
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003138
(682 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 660 0.0
Sscrofa_Chr14 638 0.0
Sscrofa_Chr09 579 e-163
Sscrofa_Chr15 494 e-137
gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183 343 8e-92
Sscrofa_Chr13 216 1e-53
Sscrofa_Chr05 188 3e-45
Sscrofa_Chr01 96 3e-17
>Sscrofa_Chr12
|| Length = 63588571
Score = 660 bits (333), Expect = 0.0
Identities = 507/561 (90%), Gaps = 3/561 (0%)
Strand = Plus / Plus
Query: 39 aggtctttccttgcggcggcttgagagcaggctagcagttgcggtggccggggtcatggc 98
||||||||||||| |||||| ||||||||| ||||| || ||||||||| ||||||||
Sbjct: 54240805 aggtctttccttggggcggcgtgagagcagagtagcacctgtggtggccggagtcatggc 54240864
Query: 99 aggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaagtgc 158
||||| ||||||||||||| || |||||||||||| ||| |||||| ||||||||| ||
Sbjct: 54240865 gggacaggcatttagaaagtgtcgtcctctctttgaccgaatattaggtgaaagaagggc 54240924
Query: 159 agctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagtatt 218
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct: 54240925 agctgaaacggtaaccaaaggaagcattgtgcttccagaaaaatctcaaggaaaagtctt 54240984
Query: 219 gcaagcaaccgtagtagctgttggatcaggctctaaaggaaagggtggagagattcaacc 278
|||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 54240985 gcaagcgaca-tagtagctgttggatcaggctctaaaggaaagggtggagggattcagcc 54241043
Query: 279 agttagtgtcaaagttggagataaagttcttctgccagaatatggaggcaccagagtagt 338
||| |||| ||||| |||||||||| |||||||||||| | ||||||||||| |||||
Sbjct: 54241044 agtcggtgtgaaagtcggagataaaggtcttctgccagattttggaggcaccaaggtagt 54241103
Query: 339 tctggatgacaaggattatttcttatttagagatggtgacattcttggaaaatacgtaga 398
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 54241104 tctggatgacaaggattatttcttatttagagatggtggcattcttggaaaataggcaga 54241163
Query: 399 ctgaaacaagtcactgtc-taatggcatcacatgaagctgcccccattccactgaagttc 457
|||||| ||||||||||| |||||| ||||||||||||| |||| ||||||||||||||
Sbjct: 54241164 ctgaaataagtcactgtcgaaatggcgtcacatgaagctg-cccctttccactgaagttc 54241222
Query: 458 tgagatcttttcatcatgtaaataatttcaatgtctgtcttttataataaactaatgata 517
||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||| ||
Sbjct: 54241223 tgagatcttttcatcctataaataatttccatgtctgtcttttataataagctaatgcta 54241282
Query: 518 tccaaactgatgacatccagtgcttctaaaatttagtttcactgtaccgatgtacacatt 577
|||||||||||||||||||||| ||| |||||||||||||||||||| ||| || |||||
Sbjct: 54241283 tccaaactgatgacatccagtgtttccaaaatttagtttcactgtactgatatagacatt 54241342
Query: 578 tacaaataaaaatatataaat 598
| ||| |||||||||||||||
Sbjct: 54241343 tccaactaaaaatatataaat 54241363
Score = 343 bits (173), Expect = 8e-92
Identities = 340/392 (86%), Gaps = 4/392 (1%)
Strand = Plus / Plus
Query: 112 agaaagtttcttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggta 171
|||||||||||| |||||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 22847698 agaaagtttctttctctctttgaccgggtcttagttgaaagaagtgcagctgaaactgta 22847757
Query: 172 accaaaggaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgta 231
| ||||||| ||||| || |||||||||||||||||||||||| |||||| ||| | |
Sbjct: 22847758 atcaaaggatgcattctgtacccagaaaaatctcaaggaaaagtactgcaaggaacagca 22847817
Query: 232 gtagctgttggatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaa 291
||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||| |||
Sbjct: 22847818 gtagctgttggatcaggctctgaaggaaagggtggagagagtcaacaagtt-gtgtgaaa 22847876
Query: 292 gttggagataaagttcttctgccagaatatggaggcaccagagtagttctggatgacaag 351
||||| |||||||||||||| ||||| |||||||| ||| || ||||||||| ||||||
Sbjct: 22847877 cttggaaataaagttcttctgtcagaacatggaggctccaaagcagttctggacgacaag 22847936
Query: 352 gattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagtca 411
|||||||||||| |||||| |||||| | || ||||| || |||| |||||| ||| ||
Sbjct: 22847937 gattatttcttacttagagctggtgatgtcctcggaaagtatgtaggctgaaataagcca 22847996
Query: 412 c-tgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttca 470
| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 22847997 cgattgaaatggcatcacctgaagctg--cccattccactgaagttctgagatcttttca 22848054
Query: 471 tcatgtaaataatttcaatgtctgtcttttat 502
|||||||| |||||| ||| || ||||||||
Sbjct: 22848055 tcatgtaattaatttttatgcctctcttttat 22848086
>Sscrofa_Chr14
|| Length = 153851969
Score = 638 bits (322), Expect = 0.0
Identities = 452/491 (92%), Gaps = 7/491 (1%)
Strand = Plus / Plus
Query: 39 aggtctttccttgcggcggcttgagagcaggctagcagttgcggtggccggggtcatggc 98
||||||||||||| |||||| ||||||||| |||||| || ||||| | | ||||| ||
Sbjct: 120712230 aggtctttccttgtggcggcgtgagagcagagtagcagctgtggtggtcagagtcatagc 120712289
Query: 99 aggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaagtgc 158
|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 120712290 aggacaggcatttagaaagtttcttcctctctttgacggagtattagttcaaagaagtgc 120712349
Query: 159 agctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagtatt 218
||||||||| |||||||||||||||||||||||| ||||||||||| |||| || ||||
Sbjct: 120712350 agctgaaacagtaaccaaaggaggcattatgctttcagaaaaatcttgaggacaaatatt 120712409
Query: 219 gcaagcaaccgtagtagctgttggatcaggctctaaaggaaagggtggagagattcaacc 278
||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 120712410 gcaagcagcagtagtagctattggatcaggctctaaaggaaagggtggagagattcaacc 120712469
Query: 279 agttagtgtcaaagttggagataaagttcttctgccagaatatggaggcaccagagtagt 338
|||||| || ||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 120712470 agttagcgtgaaagttggagataaagttcttctgccagattatagaggcaccaaagtagt 120712529
Query: 339 tctggatgacaaggattatttcttatttagagatggtgacattcttggaaaatacgtaga 398
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 120712530 tctggatgacaaggattatttc----ttagagatggtgacattcttggaaaatatgtaga 120712585
Query: 399 ctg-aaacaagtcactgtc-taatggcatcacatgaagctgcccccattccactgaagtt 456
||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 120712586 ctgaaaataagtcactgtcaaaatggcatcacatgaagctg-ccccattccactgaagtt 120712644
Query: 457 ctgagatcttttcatcatgtaaataatttcaatgtctgtcttttataataaactaatgat 516
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 120712645 ctgagatcttttcatcatgtaaataatttccatgtctgtcttttataataaactaatgat 120712704
Query: 517 atccaaactga 527
|||||||||||
Sbjct: 120712705 atccaaactga 120712715
Score = 373 bits (188), Expect = e-101
Identities = 330/375 (88%), Gaps = 3/375 (0%)
Strand = Plus / Plus
Query: 140 tattagttgaaagaagtgcagctgaaacggtaaccaaaggaggcattatgcttccagaaa 199
||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 2478693 tattagttgaaagaagttcagctgaaactgcaaccaaaggaggcattatgcttccagaaa 2478752
Query: 200 aatctcaaggaaaagtattgcaagcaaccgtagtagctgttggatcaggctctaaaggaa 259
||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |
Sbjct: 2478753 aatctcaaggaaaagtactgcaagcaacagtagtagctgttggatagggctctaaaggga 2478812
Query: 260 agggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaat 319
||||||| |||||||||||| |||| | |||||||||||||| ||| ||| |||||||
Sbjct: 2478813 agggtggtgagattcaaccaattagcatgaaagttggagataagtttcctctcccagaat 2478872
Query: 320 atggaggcaccagagtagttctggatgacaaggattatttcttatttagagatggtgaca 379
|| | ||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct: 2478873 atagcggcaccaaggtagttctggatgacaaggattagttcttacttagacatggtgaca 2478932
Query: 380 ttcttggaaaatacgtagactgaaacaagtcac-tgtctaatggcatcacatgaagctgc 438
||||||||||||| | ||||||||| ||||||| | | ||||||||||||| ||||||
Sbjct: 2478933 ttcttggaaaatatgcagactgaaataagtcacttttgaaatggcatcacataaagctg- 2478991
Query: 439 ccccattccactgaagttctgagatcttttcatcatgtaaataatttcaatgtctgtctt 498
|| |||||||||| |||||| ||||||||||||||||||||| || |||||| |||
Sbjct: 2478992 -cctattccactgacattctgaaatcttttcatcatgtaaataactttcatgtctctcta 2479050
Query: 499 ttataataaactaat 513
| || ||||||||||
Sbjct: 2479051 tcatgataaactaat 2479065
Score = 63.9 bits (32), Expect = 1e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 91 gtcatggcaggacaagcatttagaaagtttcttcctctctttga 134
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2478377 gtcatggcaggacagaaatttagaaagtttcttcctctctttga 2478420
>Sscrofa_Chr09
|| Length = 153670197
Score = 579 bits (292), Expect = e-163
Identities = 439/483 (90%), Gaps = 5/483 (1%)
Strand = Plus / Minus
Query: 81 ggtggccggggtcatggcaggacaagcatttagaaagtttcttcctctctttgatcgagt 140
||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct: 67756007 ggtggccggagtcatggcaggacaggcatttagaaagtttcttcttctctttgactgagt 67755948
Query: 141 attagttgaaagaagtgcagctgaaacggtaaccaaaggaggcattatgcttccagaaaa 200
||||||||||||| || | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 67755947 attagttgaaagacatgtacctgaaactgtaaccaaaggaggcattatgctttcagaaaa 67755888
Query: 201 atctcaaggaaaagtattgcaagcaaccgtagtagctgttggatcaggctctaaaggaaa 260
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 67755887 atctcaaggaaaagtgttgcaagcaacagtagcagctgttggatcaggctctaaaggaaa 67755828
Query: 261 gggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaata 320
|||||||||||| ||||||||| | ||||||||||||||||| |||||||||| |||
Sbjct: 67755827 -ggtggagagatttgaccagttagcatgaaagttggagataaagtccttctgccaggata 67755769
Query: 321 tggaggcaccagagtagttctggatgacaaggattatttcttatttagagatggtgacat 380
||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 67755768 tggaggcaccaaagtagttctggatgacaaggatcatttattatttagaaatggtgacat 67755709
Query: 381 tcttggaaaatacgtagactgaaacaagtcact-gtctaatggcatcacatgaagctgcc 439
|||||||||||| || |||||||| |||||||| | |||| |||||||||||||||
Sbjct: 67755708 tcttggaaaatatgtggactgaaataagtcactattgaaatgccatcacatgaagctg-- 67755651
Query: 440 cccattccactgaagttctgagatcttttcatcatgtaaataatttcaatgtctgtcttt 499
|||||||||||||||||||| |||| ||||||| | |||||||||| |||| |||||||
Sbjct: 67755650 cccattccactgaagttctgcgatcatttcatcct-caaataatttccatgtttgtcttt 67755592
Query: 500 tataataaactaatgatatccaaactgatgacatccagtgcttctaaaatttagtttcac 559
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67755591 tataataaactaatgatatccaaactgatgacatccagtgtttctaaaatttagtttcac 67755532
Query: 560 tgt 562
|||
Sbjct: 67755531 tgt 67755529
>Sscrofa_Chr15
|| Length = 157681621
Score = 494 bits (249), Expect = e-137
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 350 aggattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112549998 aggattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagt 112550057
Query: 410 cactgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112550058 cactgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttc 112550117
Query: 470 atcatgtaaataatttcaatgtctgtcttttataataaactaatgatatccaaactgatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112550118 atcatgtaaataatttcaatgtctgtcttttataataaactaatgatatccaaactgatg 112550177
Query: 530 acatccagtgcttctaaaatttagtttcactgtaccgatgtacacatttacaaataaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112550178 acatccagtgcttctaaaatttagtttcactgtaccgatgtacacatttacaaataaaaa 112550237
Query: 590 tatataaat 598
|||||||||
Sbjct: 112550238 tatataaat 112550246
Score = 484 bits (244), Expect = e-134
Identities = 322/348 (92%)
Strand = Plus / Minus
Query: 2 cttttcccgagttcacgtggacggagggcagtactgcaggtctttccttgcggcggcttg 61
|||||||||||||||||||||| |||| ||||||||||||||||||||||| | || ||
Sbjct: 1975866 cttttcccgagttcacgtggacagaggacagtactgcaggtctttccttgcaggggtgtg 1975807
Query: 62 agagcaggctagcagttgcggtggccggggtcatggcaggacaagcatttagaaagtttc 121
||||||| ||||| || || | | || |||||||||||||| ||||||||||||||||
Sbjct: 1975806 agagcagagtagcaactgtggggtctggagtcatggcaggacaggcatttagaaagtttc 1975747
Query: 122 ttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggtaaccaaaggag 181
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1975746 ttcctctctttgatcgactattagttgaaagaagtgcagctgaaatggtaaccaaaggag 1975687
Query: 182 gcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctgttg 241
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 1975686 gcattatgcttctagaaaaatctcaaggaaaagtattgcaagcaacagtagtagctattg 1975627
Query: 242 gatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaagttggagata 301
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 1975626 gatcaggctctaaaggaaagggtggaaagatttaaccagttagtgtgaaagttggagata 1975567
Query: 302 aagttcttctgccagaatatggaggcaccagagtagttctggatgaca 349
|| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1975566 aatttcttctgccagaatatggaggcaccaaagtagttctggatgaca 1975519
Score = 331 bits (167), Expect = 3e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 96 ggcaggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaag 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548711 ggcaggacaagcatttagaaagtttcttcctctctttgatcgagtattagttgaaagaag 112548770
Query: 156 tgcagctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548771 tgcagctgaaacggtaaccaaaggaggcattatgcttccagaaaaatctcaaggaaaagt 112548830
Query: 216 attgcaagcaaccgtagtagctgttggatcaggctctaaaggaaagg 262
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548831 attgcaagcaaccgtagtagctgttggatcaggctctaaaggaaagg 112548877
Score = 190 bits (96), Expect = 7e-46
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 2 cttttcccgagttcacgtggacggagggcagtactgcaggtctttccttgcggcggcttg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112548090 cttttcccgagttcacgtggacggagggcagtactgcaggtctttccttgcggcggcttg 112548149
Query: 62 agagcaggctagcagttgcggtggccggggtcatgg 97
||||||||||||||||||||||||||||||||||||
Sbjct: 112548150 agagcaggctagcagttgcggtggccggggtcatgg 112548185
Score = 186 bits (94), Expect = 1e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 259 aagggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112549830 aagggtggagagattcaaccagttagtgtcaaagttggagataaagttcttctgccagaa 112549889
Query: 319 tatggaggcaccagagtagttctggatgacaagg 352
||||||||||||||||||||||||||||||||||
Sbjct: 112549890 tatggaggcaccagagtagttctggatgacaagg 112549923
>gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183
Length = 88797
Score = 343 bits (173), Expect = 8e-92
Identities = 340/392 (86%), Gaps = 4/392 (1%)
Strand = Plus / Minus
Query: 112 agaaagtttcttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggta 171
|||||||||||| |||||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 34294 agaaagtttctttctctctttgaccgggtcttagttgaaagaagtgcagctgaaactgta 34235
Query: 172 accaaaggaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgta 231
| ||||||| ||||| || |||||||||||||||||||||||| |||||| ||| | |
Sbjct: 34234 atcaaaggatgcattctgtacccagaaaaatctcaaggaaaagtactgcaaggaacagca 34175
Query: 232 gtagctgttggatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaa 291
||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||| |||
Sbjct: 34174 gtagctgttggatcaggctctgaaggaaagggtggagagagtcaacaagtt-gtgtgaaa 34116
Query: 292 gttggagataaagttcttctgccagaatatggaggcaccagagtagttctggatgacaag 351
||||| |||||||||||||| ||||| |||||||| ||| || ||||||||| ||||||
Sbjct: 34115 cttggaaataaagttcttctgtcagaacatggaggctccaaagcagttctggacgacaag 34056
Query: 352 gattatttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagtca 411
|||||||||||| |||||| |||||| | || ||||| || |||| |||||| ||| ||
Sbjct: 34055 gattatttcttacttagagctggtgatgtcctcggaaagtatgtaggctgaaataagcca 33996
Query: 412 c-tgtctaatggcatcacatgaagctgcccccattccactgaagttctgagatcttttca 470
| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 33995 cgattgaaatggcatcacctgaagctg--cccattccactgaagttctgagatcttttca 33938
Query: 471 tcatgtaaataatttcaatgtctgtcttttat 502
|||||||| |||||| ||| || ||||||||
Sbjct: 33937 tcatgtaattaatttttatgcctctcttttat 33906
>Sscrofa_Chr13
|| Length = 218635234
Score = 216 bits (109), Expect = 1e-53
Identities = 225/261 (86%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 118 tttcttcctctctttgatcgagtattagttgaaagaagtgcagctgaaacggtaaccaaa 177
|||||||| ||| |||| || |||| |||||||||||| |||||||||| ||||||||
Sbjct: 149893452 tttcttcccttctctgatggaatattggttgaaagaagttcagctgaaactataaccaaa 149893511
Query: 178 ggaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagct 237
| ||| |||| |||||||||||||||||||| ||||||||||||| || |||| || |
Sbjct: 149893512 gaaggtattacacttccagaaaaatctcaagggaaagtattgcaagtgacagtagcagtt 149893571
Query: 238 gttggatcaggctctaaaggaaagggtggagagattcaaccagttagtgt-caaagttgg 296
| ||||||||| | ||||||||||||||||| ||||||||||||||| | ||| ||||
Sbjct: 149893572 gctggatcaggttagaaaggaaagggtggagaaattcaaccagttagtttggaaaattgg 149893631
Query: 297 agataaagttcttctgccagaatatggaggcaccagagtagttctggatgacaaggatta 356
| ||||| ||||||| |||||||||||||| | || ||||||||| ||||||||| ||||
Sbjct: 149893632 aaataaaattcttctcccagaatatggaggta-caaagtagttctagatgacaagaatta 149893690
Query: 357 tttcttatttagagatggtga 377
|||||||||||||||||||||
Sbjct: 149893691 tttcttatttagagatggtga 149893711
>Sscrofa_Chr05
|| Length = 111506441
Score = 188 bits (95), Expect = 3e-45
Identities = 143/159 (89%)
Strand = Plus / Minus
Query: 180 aggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctgt 239
||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |||
Sbjct: 15570575 aggcattatgcttccagaaaaatctcaaggaaaagtattacaagcaacagtagaaaatgt 15570516
Query: 240 tggatcaggctctaaaggaaagggtggagagattcaaccagttagtgtcaaagttggaga 299
|||||||| |||||||||||| |||||||||||||||| ||||| | |||| ||||||
Sbjct: 15570515 tggatcagtctctaaaggaaatggtggagagattcaacaagttaacctgaaagctggaga 15570456
Query: 300 taaagttcttctgccagaatatggaggcaccagagtagt 338
|||||||||||| ||||||||||||||||| | ||||||
Sbjct: 15570455 taaagttcttctcccagaatatggaggcactaaagtagt 15570417
Score = 133 bits (67), Expect = 1e-28
Identities = 108/119 (90%), Gaps = 2/119 (1%)
Strand = Plus / Minus
Query: 445 tccactgaagttctgagatcttttcatcatgtaaataatttcaatgtctgtcttttataa 504
|||||||||||||||| |||||| | |||||||||||||||| || ||| || |||||||
Sbjct: 15569791 tccactgaagttctgaaatctttcc-tcatgtaaataatttccatatctctcctttataa 15569733
Query: 505 taaactaatgatatccaaactgatgacatccagtgcttctaaaatttagtttcactgta 563
||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 15569732 taaactaatgata-ccaaactaatgacatccagtgtgtctaaaatttagtttcactgta 15569675
Score = 71.9 bits (36), Expect = 4e-10
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 358 ttcttatttagagatggtgacattcttggaaaatacgtagactgaaacaagtcact 413
|||||||||||||||| ||||||||||||||| || ||||||||||| || |||||
Sbjct: 15569968 ttcttatttagagatgatgacattcttggaaagtatgtagactgaaataaatcact 15569913
>Sscrofa_Chr01
|| Length = 315321322
Score = 95.6 bits (48), Expect = 3e-17
Identities = 170/207 (82%), Gaps = 4/207 (1%)
Strand = Plus / Plus
Query: 179 gaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctg 238
|||||||||||| ||||||||| ||||| ||||||||| |||| | ||| |||||||
Sbjct: 33783827 gaggcattatgcgtccagaaaattctcagggaaaagtactgcatgtgacctgagtagctt 33783886
Query: 239 ttggatcaggctctaaaggaaagggtg--gagagattcaaccagttagtgtcaaagttgg 296
|| || ||||||||| || |||||| |||| ||| |||||||||| | ||||||||
Sbjct: 33783887 ctgaattgggctctaaaagagagggtgaagagatatttaaccagttagcatgaaagttgg 33783946
Query: 297 agataaa-gttcttctgccagaatatggaggcaccagagtagttctggatgacaaggatt 355
| ||||| |||||||| |||||||| ||||| || ||||||||| |||||||||| ||
Sbjct: 33783947 aaataaacgttcttcttccagaataccaaggcaacacagtagttctagatgacaagggtt 33784006
Query: 356 atttcttatttagagatggtgacattc 382
|||||| ||| ||| |||||||||||
Sbjct: 33784007 ctttctt-ttttgagctggtgacattc 33784032
Score = 95.6 bits (48), Expect = 3e-17
Identities = 170/207 (82%), Gaps = 4/207 (1%)
Strand = Plus / Plus
Query: 179 gaggcattatgcttccagaaaaatctcaaggaaaagtattgcaagcaaccgtagtagctg 238
|||||||||||| ||||||||| ||||| ||||||||| |||| | ||| |||||||
Sbjct: 50667904 gaggcattatgcgtccagaaaattctcagggaaaagtactgcatgtgacctgagtagctt 50667963
Query: 239 ttggatcaggctctaaaggaaagggtg--gagagattcaaccagttagtgtcaaagttgg 296
|| || ||||||||| || |||||| |||| ||| |||||||||| | ||||||||
Sbjct: 50667964 ctgaattgggctctaaaagagagggtgaagagatatttaaccagttagcatgaaagttgg 50668023
Query: 297 agataaa-gttcttctgccagaatatggaggcaccagagtagttctggatgacaaggatt 355
| ||||| |||||||| |||||||| ||||| || ||||||||| |||||||||| ||
Sbjct: 50668024 aaataaacgttcttcttccagaataccaaggcaacacagtagttctagatgacaagggtt 50668083
Query: 356 atttcttatttagagatggtgacattc 382
|||||| ||| ||| |||||||||||
Sbjct: 50668084 ctttctt-ttttgagctggtgacattc 50668109
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,528,531
Number of extensions: 854
Number of successful extensions: 854
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 22
Length of query: 682
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 661
Effective length of database: 2,808,413,156
Effective search space: 1856361096116
Effective search space used: 1856361096116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)