Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003142
(1162 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039822.1| transmembrane protein 173 [Bos taurus]. 439 e-123
>ref|NP_001039822.1| transmembrane protein 173 [Bos taurus].
Length = 378
Score = 439 bits (1130), Expect = e-123
Identities = 221/290 (76%), Positives = 233/290 (80%)
Frame = +3
Query: 291 MPYSSLHPSIPQPRXXXXXXXXXXXXXXXXXXXXXXXELPEYTLRWLVLHLASQQIGLLV 470
MP+SSLHPSIPQPR E P+YTL+WLVLHLASQQ+GLL+
Sbjct: 1 MPHSSLHPSIPQPRGLRAQKAALVLLSACLVALWGLGEPPDYTLKWLVLHLASQQMGLLI 60
Query: 471 KGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXX 650
KG+CSLAEELCHVHSRY SYWRA RACL +RCGALLLLSCYFY S+ +
Sbjct: 61 KGICSLAEELCHVHSRYHGSYWRAVRACLCSSMRCGALLLLSCYFYCSLPNMADLPFTWM 120
Query: 651 XXXXXXSQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQ 830
SQALNILLGLQ LAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGL ARIQ
Sbjct: 121 LALLGLSQALNILLGLQGLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLPARIQ 180
Query: 831 AYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRVY 1010
YNQ H N L G G+HRLHILFPLDCGVPDDL+VADPNIRFLHELPQQSADRAGIKGRVY
Sbjct: 181 IYNQFHNNTLQGAGSHRLHILFPLDCGVPDDLNVADPNIRFLHELPQQSADRAGIKGRVY 240
Query: 1011 TNSIYELLENGQPASVCVLEYATPLQTLFAMSQDGRAGFNREDRLEQAKL 1160
TNSIYELLENGQ A VCVLEYATPLQTLFAMSQDGRAGF+REDRLEQAKL
Sbjct: 241 TNSIYELLENGQRAGVCVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKL 290
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,514,281
Number of extensions: 1920690
Number of successful extensions: 11605
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11510
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,240,222
Effective search space: 4029982826
Effective search space used: 4029982826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003142
(1162 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848338.1| PREDICTED: hypothetical protein XP_843245 [Cani... 416 e-116
>ref|XP_848338.1| PREDICTED: hypothetical protein XP_843245 [Canis familiaris].
Length = 422
Score = 416 bits (1070), Expect = e-116
Identities = 211/291 (72%), Positives = 229/291 (78%)
Frame = +3
Query: 288 KMPYSSLHPSIPQPRXXXXXXXXXXXXXXXXXXXXXXXELPEYTLRWLVLHLASQQIGLL 467
KM +SLHPSIP+PR ELPE+ L+WLVLHLAS Q+GLL
Sbjct: 47 KMLQASLHPSIPRPRGTRAQKAALVLLAVSLGALWGLGELPEHILQWLVLHLASLQLGLL 106
Query: 468 VKGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKXXXXXXX 647
KG+C L EELCH+HSRYQ SYWRA RACLGCPIRCGALLLLSCYFY S+ +
Sbjct: 107 FKGVCYLTEELCHLHSRYQGSYWRATRACLGCPIRCGALLLLSCYFYGSLPNIAGLPFTW 166
Query: 648 XXXXXXXSQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARI 827
SQALNILL LQ LAPAEVSA+CEKRNFNVAHGLAWSY+IGYLRLILPGL ARI
Sbjct: 167 MLALLGLSQALNILLELQGLAPAEVSAVCEKRNFNVAHGLAWSYFIGYLRLILPGLPARI 226
Query: 828 QAYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRV 1007
QA H N+L GIG+HRLHILFPLDCGVPDDLSV DPNIRFL+ELPQQSA+RAGIK RV
Sbjct: 227 QAL---HNNMLQGIGSHRLHILFPLDCGVPDDLSVVDPNIRFLYELPQQSANRAGIKRRV 283
Query: 1008 YTNSIYELLENGQPASVCVLEYATPLQTLFAMSQDGRAGFNREDRLEQAKL 1160
YTNS+YELLE GQPA +CVLEYATPLQTLFAMSQDGRAGF+REDRLEQAKL
Sbjct: 284 YTNSVYELLEKGQPAGICVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKL 334
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,840,085
Number of extensions: 1973159
Number of successful extensions: 11433
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11326
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 282
Effective length of database: 15,374,224
Effective search space: 4335531168
Effective search space used: 4335531168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003142
(1162 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_938023.1| transmembrane protein 173 [Homo sapiens]. 381 e-106
>ref|NP_938023.1| transmembrane protein 173 [Homo sapiens].
Length = 379
Score = 381 bits (979), Expect = e-106
Identities = 193/290 (66%), Positives = 221/290 (76%)
Frame = +3
Query: 291 MPYSSLHPSIPQPRXXXXXXXXXXXXXXXXXXXXXXXELPEYTLRWLVLHLASQQIGLLV 470
MP+SSLHPSIP PR E PE+TLR+LVLHLAS Q+GLL+
Sbjct: 1 MPHSSLHPSIPCPRGHGAQKAALVLLSACLVTLWGLGEPPEHTLRYLVLHLASLQLGLLL 60
Query: 471 KGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXX 650
G+CSLAEEL H+HSRY+ SYWR RACLGCP+R GALLLLS YFY+S+ +
Sbjct: 61 NGVCSLAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWM 120
Query: 651 XXXXXXSQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQ 830
SQALNILLGL+ LAPAE+SA+CEK NFNVAHGLAWSYYIGYLRLILP L+ARI+
Sbjct: 121 LALLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR 180
Query: 831 AYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRVY 1010
YNQ + N+L G + RL+IL PLDCGVPD+LS+ADPNIRFL +LPQQ+ D AGIK RVY
Sbjct: 181 TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY 240
Query: 1011 TNSIYELLENGQPASVCVLEYATPLQTLFAMSQDGRAGFNREDRLEQAKL 1160
+NSIYELLENGQ A CVLEYATPLQTLFAMSQ +AGF+REDRLEQAKL
Sbjct: 241 SNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKL 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,492,191
Number of extensions: 1912634
Number of successful extensions: 10602
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10532
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,868,908
Effective search space: 4207900964
Effective search space used: 4207900964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003142
(1162 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082537.1| transmembrane protein 173 [Mus musculus]. 376 e-104
>ref|NP_082537.1| transmembrane protein 173 [Mus musculus].
Length = 378
Score = 376 bits (966), Expect = e-104
Identities = 183/290 (63%), Positives = 220/290 (75%)
Frame = +3
Query: 291 MPYSSLHPSIPQPRXXXXXXXXXXXXXXXXXXXXXXXELPEYTLRWLVLHLASQQIGLLV 470
MPYS+LHP+IP+PR + P +TL++L LHLAS ++GLL+
Sbjct: 1 MPYSNLHPAIPRPRGHRSKYVALIFLVASLMILWVAKDPPNHTLKYLALHLASHELGLLL 60
Query: 471 KGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXX 650
K LC LAEELCHV SRYQ SYW+A RACLGCPI C A++LLS YFYF +++
Sbjct: 61 KNLCCLAEELCHVQSRYQGSYWKAVRACLGCPIHCMAMILLSSYFYF-LQNTADIYLSWM 119
Query: 651 XXXXXXSQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQ 830
++L++LLGLQ L PAEVSA+CE++ NVAHGLAWSYYIGYLRLILPGL+ARI+
Sbjct: 120 FGLLVLYKSLSMLLGLQSLTPAEVSAVCEEKKLNVAHGLAWSYYIGYLRLILPGLQARIR 179
Query: 831 AYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRVY 1010
+NQ H N+L G G+ RL+ILFPLDCGVPD+LSV DPNIRF LPQQ+ DRAGIK RVY
Sbjct: 180 MFNQLHNNMLSGAGSRRLYILFPLDCGVPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVY 239
Query: 1011 TNSIYELLENGQPASVCVLEYATPLQTLFAMSQDGRAGFNREDRLEQAKL 1160
+NS+YE+LENGQPA VC+LEYATPLQTLFAMSQD +AGF+REDRLEQAKL
Sbjct: 240 SNSVYEILENGQPAGVCILEYATPLQTLFAMSQDAKAGFSREDRLEQAKL 289
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,376,857
Number of extensions: 1555552
Number of successful extensions: 8192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8111
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 284
Effective length of database: 12,523,851
Effective search space: 3556773684
Effective search space used: 3556773684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003142
(1162 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136310.1| transmembrane protein 173 [Sus scrofa]. 500 e-142
>ref|NP_001136310.1| transmembrane protein 173 [Sus scrofa].
Length = 378
Score = 500 bits (1287), Expect = e-142
Identities = 250/290 (86%), Positives = 251/290 (86%)
Frame = +3
Query: 291 MPYSSLHPSIPQPRXXXXXXXXXXXXXXXXXXXXXXXELPEYTLRWLVLHLASQQIGLLV 470
MPYSSLHPSIPQPR ELPEYTLRWLVLHLASQQIGLLV
Sbjct: 1 MPYSSLHPSIPQPRGLRAQVAALVLLGACLVALWGLGELPEYTLRWLVLHLASQQIGLLV 60
Query: 471 KGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXX 650
KGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDK
Sbjct: 61 KGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKAGLPLPWM 120
Query: 651 XXXXXXSQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQ 830
SQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQ
Sbjct: 121 LALLGLSQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQ 180
Query: 831 AYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRVY 1010
AYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRVY
Sbjct: 181 AYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRVY 240
Query: 1011 TNSIYELLENGQPASVCVLEYATPLQTLFAMSQDGRAGFNREDRLEQAKL 1160
TNSIYELLENGQPA VCVL YATPLQTLFAMSQDGRAGF+REDRLEQAKL
Sbjct: 241 TNSIYELLENGQPAGVCVLGYATPLQTLFAMSQDGRAGFSREDRLEQAKL 290
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,359,261
Number of extensions: 1251961
Number of successful extensions: 6997
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6947
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 286
Effective length of database: 8,829,335
Effective search space: 2525189810
Effective search space used: 2525189810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003142
(1162 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 555 e-155
>Sscrofa_Chr02
|| Length = 162569375
Score = 555 bits (280), Expect = e-155
Identities = 280/280 (100%)
Strand = Plus / Minus
Query: 11 ggggatggcctggggcactgccatgggagacttggcagcttccctcaccccaagctgggc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147176437 ggggatggcctggggcactgccatgggagacttggcagcttccctcaccccaagctgggc 147176378
Query: 71 gtggctcccgaggccttggggcgcttcctccctcctcggaggcgggaaataagctcccca 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147176377 gtggctcccgaggccttggggcgcttcctccctcctcggaggcgggaaataagctcccca 147176318
Query: 131 gcgccgagcctggagggatgtggtgaagaaagctgtgattgttttgaatctttcgttttc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147176317 gcgccgagcctggagggatgtggtgaagaaagctgtgattgttttgaatctttcgttttc 147176258
Query: 191 gggttgcagcctgaaaggccccgtggggctgggagcccttggacaggaccttctcccctt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147176257 gggttgcagcctgaaaggccccgtggggctgggagcccttggacaggaccttctcccctt 147176198
Query: 251 gccgtcttccagaaacaacctgcggtctgggaggcagaag 290
||||||||||||||||||||||||||||||||||||||||
Sbjct: 147176197 gccgtcttccagaaacaacctgcggtctgggaggcagaag 147176158
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 806 cccagggctccgggctcggatccaagcttataatcagcgccacaagaacgtactcggggg 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171897 cccagggctccgggctcggatccaagcttataatcagcgccacaagaacgtactcggggg 147171838
Query: 866 catagggaaccaccggctgcacatcctcttcccgttggactgtggggtgcccgatgacct 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171837 catagggaaccaccggctgcacatcctcttcccgttggactgtggggtgcccgatgacct 147171778
Query: 926 gagcgtggctgaccccaacattcgcttcctgcacgagctgccccagcaaagtgccgaccg 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171777 gagcgtggctgaccccaacattcgcttcctgcacgagctgccccagcaaagtgccgaccg 147171718
Query: 986 tgctggcatcaagggccgggtgtacaccaacagcatctatgagcttctggagaacgggca 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171717 tgctggcatcaagggccgggtgtacaccaacagcatctatgagcttctggagaacgggca 147171658
Query: 1046 gccgg 1050
|||||
Sbjct: 147171657 gccgg 147171653
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 289 agatgccctactccagcctgcatccatccatcccacagcccaggggcctcagggctcagg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175630 agatgccctactccagcctgcatccatccatcccacagcccaggggcctcagggctcagg 147175571
Query: 349 tggcagccttggtccttctaggtgcctgcttggtggccctttgggggctgggggagctgc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175570 tggcagccttggtccttctaggtgcctgcttggtggccctttgggggctgggggagctgc 147175511
Query: 409 cagaatacacgctccggtggctggtgctccacctggcctcccagcagataggactgctgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175510 cagaatacacgctccggtggctggtgctccacctggcctcccagcagataggactgctgg 147175451
Query: 469 tgaaggggctctgcagtctggcggaggagctgtgccacgtccactccaggt 519
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175450 tgaaggggctctgcagtctggcggaggagctgtgccacgtccactccaggt 147175400
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 515 caggtaccagagcagctactggagggctgcgcgggcctgcctgggctgccccatccgctg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175282 caggtaccagagcagctactggagggctgcgcgggcctgcctgggctgccccatccgctg 147175223
Query: 575 tggagccctgctgctgctgtcctgctacttctacttctccatccgagacaaggctggcct 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175222 tggagccctgctgctgctgtcctgctacttctacttctccatccgagacaaggctggcct 147175163
Query: 635 gcccctcccctggatgctggccctcctgggcctctcgcaggccctaaacatcctcctggg 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175162 gcccctcccctggatgctggccctcctgggcctctcgcaggccctaaacatcctcctggg 147175103
Query: 695 cctccag 701
|||||||
Sbjct: 147175102 cctccag 147175096
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 699 cagcacctggccccagctgaagtctctgcaatctgtgaaaaaaggaacttcaacgtggct 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147174852 cagcacctggccccagctgaagtctctgcaatctgtgaaaaaaggaacttcaacgtggct 147174793
Query: 759 catggactggcctggtcttattacatcgggtacctgcggctgatcctcccagg 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147174792 catggactggcctggtcttattacatcgggtacctgcggctgatcctcccagg 147174740
Score = 208 bits (105), Expect = 5e-51
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 1054 gcgtctgtgtcctggagtacgccactcccttgcagaccttgttcgccatgtcacaggatg 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147170687 gcgtctgtgtcctggagtacgccactcccttgcagaccttgttcgccatgtcacaggatg 147170628
Query: 1114 gccgcgctggcttcaaccgggaggatcggctcgagcaggccaaactctt 1162
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 147170627 gccgcgctggcttcagccgggaggatcggctcgagcaggccaaactctt 147170579
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,646,788
Number of extensions: 937
Number of successful extensions: 937
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 6
Length of query: 1162
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1141
Effective length of database: 2,808,413,156
Effective search space: 3204399410996
Effective search space used: 3204399410996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)