Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003143
(924 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039822.1| transmembrane protein 173 [Bos taurus]. 448 e-126
>ref|NP_001039822.1| transmembrane protein 173 [Bos taurus].
Length = 378
Score = 448 bits (1152), Expect = e-126
Identities = 225/282 (79%), Positives = 237/282 (84%)
Frame = +3
Query: 78 PSPLAVFQKQPAVWEAEGACLVALWGLGELPEYTLRWLVLHLASQQIGLLVKGLCSLAEE 257
P P + + Q A ACLVALWGLGE P+YTL+WLVLHLASQQ+GLL+KG+CSLAEE
Sbjct: 11 PQPRGL-RAQKAALVLLSACLVALWGLGEPPDYTLKWLVLHLASQQMGLLIKGICSLAEE 69
Query: 258 LCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXXXXXXXXSQA 437
LCHVHSRY SYWRA RACL +RCGALLLLSCYFY S+ + SQA
Sbjct: 70 LCHVHSRYHGSYWRAVRACLCSSMRCGALLLLSCYFYCSLPNMADLPFTWMLALLGLSQA 129
Query: 438 LNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQAYNQRHKNV 617
LNILLGLQ LAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGL ARIQ YNQ H N
Sbjct: 130 LNILLGLQGLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPGLPARIQIYNQFHNNT 189
Query: 618 LGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLE 797
L G G+HRLHILFPLDCGVPDDL+VADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLE
Sbjct: 190 LQGAGSHRLHILFPLDCGVPDDLNVADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLE 249
Query: 798 NGQPAGVCVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKLF 923
NGQ AGVCVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKLF
Sbjct: 250 NGQRAGVCVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKLF 291
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,826,755
Number of extensions: 1418687
Number of successful extensions: 9185
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9044
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,306,398
Effective search space: 2947117988
Effective search space used: 2947117988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003143
(924 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848338.1| PREDICTED: hypothetical protein XP_843245 [Cani... 423 e-118
>ref|XP_848338.1| PREDICTED: hypothetical protein XP_843245 [Canis familiaris].
Length = 422
Score = 423 bits (1087), Expect = e-118
Identities = 217/297 (73%), Positives = 234/297 (78%)
Frame = +3
Query: 33 LQPERPRGAGSPWTGPSPLAVFQKQPAVWEAEGACLVALWGLGELPEYTLRWLVLHLASQ 212
L P PR G+ + Q A L ALWGLGELPE+ L+WLVLHLAS
Sbjct: 53 LHPSIPRPRGT-----------RAQKAALVLLAVSLGALWGLGELPEHILQWLVLHLASL 101
Query: 213 QIGLLVKGLCSLAEELCHVHSRYQSSYWRAARACLGCPIRCGALLLLSCYFYFSIRDKXX 392
Q+GLL KG+C L EELCH+HSRYQ SYWRA RACLGCPIRCGALLLLSCYFY S+ +
Sbjct: 102 QLGLLFKGVCYLTEELCHLHSRYQGSYWRATRACLGCPIRCGALLLLSCYFYGSLPNIAG 161
Query: 393 XXXXXXXXXXXXSQALNILLGLQHLAPAEVSAICEKRNFNVAHGLAWSYYIGYLRLILPG 572
SQALNILL LQ LAPAEVSA+CEKRNFNVAHGLAWSY+IGYLRLILPG
Sbjct: 162 LPFTWMLALLGLSQALNILLELQGLAPAEVSAVCEKRNFNVAHGLAWSYFIGYLRLILPG 221
Query: 573 LRARIQAYNQRHKNVLGGIGNHRLHILFPLDCGVPDDLSVADPNIRFLHELPQQSADRAG 752
L ARIQA H N+L GIG+HRLHILFPLDCGVPDDLSV DPNIRFL+ELPQQSA+RAG
Sbjct: 222 LPARIQAL---HNNMLQGIGSHRLHILFPLDCGVPDDLSVVDPNIRFLYELPQQSANRAG 278
Query: 753 IKGRVYTNSIYELLENGQPAGVCVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKLF 923
IK RVYTNS+YELLE GQPAG+CVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKLF
Sbjct: 279 IKRRVYTNSVYELLEKGQPAGICVLEYATPLQTLFAMSQDGRAGFSREDRLEQAKLF 335
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,586,563
Number of extensions: 1458769
Number of successful extensions: 9247
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9079
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 206
Effective length of database: 15,474,232
Effective search space: 3187691792
Effective search space used: 3187691792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003143
(924 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_938023.1| transmembrane protein 173 [Homo sapiens]. 391 e-109
>ref|NP_938023.1| transmembrane protein 173 [Homo sapiens].
Length = 379
Score = 391 bits (1004), Expect = e-109
Identities = 193/264 (73%), Positives = 219/264 (82%)
Frame = +3
Query: 132 ACLVALWGLGELPEYTLRWLVLHLASQQIGLLVKGLCSLAEELCHVHSRYQSSYWRAARA 311
ACLV LWGLGE PE+TLR+LVLHLAS Q+GLL+ G+CSLAEEL H+HSRY+ SYWR RA
Sbjct: 28 ACLVTLWGLGEPPEHTLRYLVLHLASLQLGLLLNGVCSLAEELRHIHSRYRGSYWRTVRA 87
Query: 312 CLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXXXXXXXXSQALNILLGLQHLAPAEVSAI 491
CLGCP+R GALLLLS YFY+S+ + SQALNILLGL+ LAPAE+SA+
Sbjct: 88 CLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALLGLSQALNILLGLKGLAPAEISAV 147
Query: 492 CEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQAYNQRHKNVLGGIGNHRLHILFPLDCG 671
CEK NFNVAHGLAWSYYIGYLRLILP L+ARI+ YNQ + N+L G + RL+IL PLDCG
Sbjct: 148 CEKGNFNVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCG 207
Query: 672 VPDDLSVADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLENGQPAGVCVLEYATPLQT 851
VPD+LS+ADPNIRFL +LPQQ+ D AGIK RVY+NSIYELLENGQ AG CVLEYATPLQT
Sbjct: 208 VPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQT 267
Query: 852 LFAMSQDGRAGFSREDRLEQAKLF 923
LFAMSQ +AGFSREDRLEQAKLF
Sbjct: 268 LFAMSQYSQAGFSREDRLEQAKLF 291
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,569,305
Number of extensions: 1414485
Number of successful extensions: 8590
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8469
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,934,836
Effective search space: 3076576216
Effective search space used: 3076576216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003143
(924 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082537.1| transmembrane protein 173 [Mus musculus]. 371 e-103
>ref|NP_082537.1| transmembrane protein 173 [Mus musculus].
Length = 378
Score = 371 bits (952), Expect = e-103
Identities = 179/264 (67%), Positives = 213/264 (80%)
Frame = +3
Query: 132 ACLVALWGLGELPEYTLRWLVLHLASQQIGLLVKGLCSLAEELCHVHSRYQSSYWRAARA 311
A L+ LW + P +TL++L LHLAS ++GLL+K LC LAEELCHV SRYQ SYW+A RA
Sbjct: 28 ASLMILWVAKDPPNHTLKYLALHLASHELGLLLKNLCCLAEELCHVQSRYQGSYWKAVRA 87
Query: 312 CLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXXXXXXXXSQALNILLGLQHLAPAEVSAI 491
CLGCPI C A++LLS YFYF +++ ++L++LLGLQ L PAEVSA+
Sbjct: 88 CLGCPIHCMAMILLSSYFYF-LQNTADIYLSWMFGLLVLYKSLSMLLGLQSLTPAEVSAV 146
Query: 492 CEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQAYNQRHKNVLGGIGNHRLHILFPLDCG 671
CE++ NVAHGLAWSYYIGYLRLILPGL+ARI+ +NQ H N+L G G+ RL+ILFPLDCG
Sbjct: 147 CEEKKLNVAHGLAWSYYIGYLRLILPGLQARIRMFNQLHNNMLSGAGSRRLYILFPLDCG 206
Query: 672 VPDDLSVADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLENGQPAGVCVLEYATPLQT 851
VPD+LSV DPNIRF LPQQ+ DRAGIK RVY+NS+YE+LENGQPAGVC+LEYATPLQT
Sbjct: 207 VPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVYSNSVYEILENGQPAGVCILEYATPLQT 266
Query: 852 LFAMSQDGRAGFSREDRLEQAKLF 923
LFAMSQD +AGFSREDRLEQAKLF
Sbjct: 267 LFAMSQDAKAGFSREDRLEQAKLF 290
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,676,683
Number of extensions: 1156521
Number of successful extensions: 6790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6661
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 207
Effective length of database: 12,583,923
Effective search space: 2604872061
Effective search space used: 2604872061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003143
(924 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136310.1| transmembrane protein 173 [Sus scrofa]. 508 e-144
>ref|NP_001136310.1| transmembrane protein 173 [Sus scrofa].
Length = 378
Score = 508 bits (1309), Expect = e-144
Identities = 250/265 (94%), Positives = 250/265 (94%)
Frame = +3
Query: 129 GACLVALWGLGELPEYTLRWLVLHLASQQIGLLVKGLCSLAEELCHVHSRYQSSYWRAAR 308
GACLVALWGLGELPEYTLRWLVLHLASQQIGLLVKGLCSLAEELCHVHSRYQSSYWRAAR
Sbjct: 27 GACLVALWGLGELPEYTLRWLVLHLASQQIGLLVKGLCSLAEELCHVHSRYQSSYWRAAR 86
Query: 309 ACLGCPIRCGALLLLSCYFYFSIRDKXXXXXXXXXXXXXXSQALNILLGLQHLAPAEVSA 488
ACLGCPIRCGALLLLSCYFYFSIRDK SQALNILLGLQHLAPAEVSA
Sbjct: 87 ACLGCPIRCGALLLLSCYFYFSIRDKAGLPLPWMLALLGLSQALNILLGLQHLAPAEVSA 146
Query: 489 ICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQAYNQRHKNVLGGIGNHRLHILFPLDC 668
ICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQAYNQRHKNVLGGIGNHRLHILFPLDC
Sbjct: 147 ICEKRNFNVAHGLAWSYYIGYLRLILPGLRARIQAYNQRHKNVLGGIGNHRLHILFPLDC 206
Query: 669 GVPDDLSVADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLENGQPAGVCVLEYATPLQ 848
GVPDDLSVADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLENGQPAGVCVL YATPLQ
Sbjct: 207 GVPDDLSVADPNIRFLHELPQQSADRAGIKGRVYTNSIYELLENGQPAGVCVLGYATPLQ 266
Query: 849 TLFAMSQDGRAGFSREDRLEQAKLF 923
TLFAMSQDGRAGFSREDRLEQAKLF
Sbjct: 267 TLFAMSQDGRAGFSREDRLEQAKLF 291
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,100,002
Number of extensions: 921724
Number of successful extensions: 5626
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5540
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 209
Effective length of database: 8,879,129
Effective search space: 1855737961
Effective search space used: 1855737961
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003143
(924 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 486 e-134
>Sscrofa_Chr02
|| Length = 162569375
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 566 cccagggctccgggctcggatccaagcttataatcagcgccacaagaacgtactcggggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171897 cccagggctccgggctcggatccaagcttataatcagcgccacaagaacgtactcggggg 147171838
Query: 626 catagggaaccaccggctgcacatcctcttcccgttggactgtggggtgcccgatgacct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171837 catagggaaccaccggctgcacatcctcttcccgttggactgtggggtgcccgatgacct 147171778
Query: 686 gagcgtggctgaccccaacattcgcttcctgcacgagctgccccagcaaagtgccgaccg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171777 gagcgtggctgaccccaacattcgcttcctgcacgagctgccccagcaaagtgccgaccg 147171718
Query: 746 tgctggcatcaagggccgggtgtacaccaacagcatctatgagcttctggagaacgggca 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147171717 tgctggcatcaagggccgggtgtacaccaacagcatctatgagcttctggagaacgggca 147171658
Query: 806 gccgg 810
|||||
Sbjct: 147171657 gccgg 147171653
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 275 caggtaccagagcagctactggagggctgcgcgggcctgcctgggctgccccatccgctg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175282 caggtaccagagcagctactggagggctgcgcgggcctgcctgggctgccccatccgctg 147175223
Query: 335 tggagccctgctgctgctgtcctgctacttctacttctccatccgagacaaggctggcct 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175222 tggagccctgctgctgctgtcctgctacttctacttctccatccgagacaaggctggcct 147175163
Query: 395 gcccctcccctggatgctggccctcctgggcctctcgcaggccctaaacatcctcctggg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175162 gcccctcccctggatgctggccctcctgggcctctcgcaggccctaaacatcctcctggg 147175103
Query: 455 cctccag 461
|||||||
Sbjct: 147175102 cctccag 147175096
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 128 aggtgcctgcttggtggccctttgggggctgggggagctgccagaatacacgctccggtg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175551 aggtgcctgcttggtggccctttgggggctgggggagctgccagaatacacgctccggtg 147175492
Query: 188 gctggtgctccacctggcctcccagcagataggactgctggtgaaggggctctgcagtct 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147175491 gctggtgctccacctggcctcccagcagataggactgctggtgaaggggctctgcagtct 147175432
Query: 248 ggcggaggagctgtgccacgtccactccaggt 279
||||||||||||||||||||||||||||||||
Sbjct: 147175431 ggcggaggagctgtgccacgtccactccaggt 147175400
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 1 gctgtgattgttttgaatctttcgttttcgggttgcagcctgaaaggccccgtggggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147176286 gctgtgattgttttgaatctttcgttttcgggttgcagcctgaaaggccccgtggggctg 147176227
Query: 61 ggagcccttggacaggaccttctccccttgccgtcttccagaaacaacctgcggtctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147176226 ggagcccttggacaggaccttctccccttgccgtcttccagaaacaacctgcggtctggg 147176167
Query: 121 aggcagaaggtg 132
||||||||||||
Sbjct: 147176166 aggcagaaggtg 147176155
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 809 ggcaggcgtctgtgtcctggagtacgccactcccttgcagaccttgttcgccatgtcaca 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147170692 ggcaggcgtctgtgtcctggagtacgccactcccttgcagaccttgttcgccatgtcaca 147170633
Query: 869 ggatggccgcgctggcttcagccgggaggatcggctcgagcaggccaaactcttct 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147170632 ggatggccgcgctggcttcagccgggaggatcggctcgagcaggccaaactcttct 147170577
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 459 cagcacctggccccagctgaagtctctgcaatctgtgaaaaaaggaacttcaacgtggct 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147174852 cagcacctggccccagctgaagtctctgcaatctgtgaaaaaaggaacttcaacgtggct 147174793
Query: 519 catggactggcctggtcttattacatcgggtacctgcggctgatcctcccagg 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147174792 catggactggcctggtcttattacatcgggtacctgcggctgatcctcccagg 147174740
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,730,949
Number of extensions: 145
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 6
Length of query: 924
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 903
Effective length of database: 2,808,413,156
Effective search space: 2535997079868
Effective search space used: 2535997079868
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)