Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003144
(986 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039662.2| ribosome biogenesis protein NEP1 [Bos taurus]. 467 e-132
Alignment gi|XP_002687907.1| PREDICTED: EMG1 nucleolar protein homolog (S... 467 e-132
Alignment gi|XP_001789192.1| PREDICTED: ribosome biogenesis protein NEP1 ... 467 e-132
>ref|NP_001039662.2| ribosome biogenesis protein NEP1 [Bos taurus].
Length = 244
Score = 467 bits (1202), Expect = e-132
Identities = 232/244 (95%), Positives = 236/244 (96%)
Frame = +1
Query: 97 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 276
MAA SG FQPRERRA EQEEDWDAV PKRPRLGAGSK GGRRLIVVLEGASLETVKVGKT
Sbjct: 1 MAAPSGAFQPRERRAAEQEEDWDAVVPKRPRLGAGSKIGGRRLIVVLEGASLETVKVGKT 60
Query: 277 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 456
YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
Sbjct: 61 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 457 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 636
NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFS+
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSV 180
Query: 637 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 816
PVVSDVREL PSSDP+VFVVGAFAHG+VDVEYTEKMVSISNYPLSAALTCAK+TTAFEE
Sbjct: 181 PVVSDVRELAPSSDPIVFVVGAFAHGKVDVEYTEKMVSISNYPLSAALTCAKVTTAFEEA 240
Query: 817 WRVI 828
W VI
Sbjct: 241 WGVI 244
>ref|XP_002687907.1| PREDICTED: EMG1 nucleolar protein homolog (S. cerevisiae) [Bos
taurus].
Length = 244
Score = 467 bits (1202), Expect = e-132
Identities = 232/244 (95%), Positives = 236/244 (96%)
Frame = +1
Query: 97 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 276
MAA SG FQPRERRA EQEEDWDAV PKRPRLGAGSK GGRRLIVVLEGASLETVKVGKT
Sbjct: 1 MAAPSGAFQPRERRAAEQEEDWDAVVPKRPRLGAGSKIGGRRLIVVLEGASLETVKVGKT 60
Query: 277 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 456
YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
Sbjct: 61 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 457 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 636
NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFS+
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSV 180
Query: 637 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 816
PVVSDVREL PSSDP+VFVVGAFAHG+VDVEYTEKMVSISNYPLSAALTCAK+TTAFEE
Sbjct: 181 PVVSDVRELAPSSDPIVFVVGAFAHGKVDVEYTEKMVSISNYPLSAALTCAKVTTAFEEA 240
Query: 817 WRVI 828
W VI
Sbjct: 241 WGVI 244
>ref|XP_001789192.1| PREDICTED: ribosome biogenesis protein NEP1 [Bos taurus].
Length = 244
Score = 467 bits (1202), Expect = e-132
Identities = 232/244 (95%), Positives = 236/244 (96%)
Frame = +1
Query: 97 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 276
MAA SG FQPRERRA EQEEDWDAV PKRPRLGAGSK GGRRLIVVLEGASLETVKVGKT
Sbjct: 1 MAAPSGAFQPRERRAAEQEEDWDAVVPKRPRLGAGSKIGGRRLIVVLEGASLETVKVGKT 60
Query: 277 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 456
YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
Sbjct: 61 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 457 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 636
NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFS+
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSV 180
Query: 637 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 816
PVVSDVREL PSSDP+VFVVGAFAHG+VDVEYTEKMVSISNYPLSAALTCAK+TTAFEE
Sbjct: 181 PVVSDVRELAPSSDPIVFVVGAFAHGKVDVEYTEKMVSISNYPLSAALTCAKVTTAFEEA 240
Query: 817 WRVI 828
W VI
Sbjct: 241 WGVI 244
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,347,619
Number of extensions: 1097676
Number of successful extensions: 5220
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4988
Number of HSP's successfully gapped: 3
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003144
(986 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853373.1| PREDICTED: similar to Probable ribosome biogene... 466 e-131
Alignment gi|XP_549557.2| PREDICTED: similar to Probable ribosome biogene... 140 2e-33
>ref|XP_853373.1| PREDICTED: similar to Probable ribosome biogenesis protein NEP1
(C2f protein) isoform 2 [Canis familiaris].
Length = 244
Score = 466 bits (1200), Expect = e-131
Identities = 233/244 (95%), Positives = 236/244 (96%)
Frame = +1
Query: 97 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 276
MAA SGGFQPRERR GE EE WDAV PKRPRLGAG+K GGRRLIVVLEGASLETVKVGKT
Sbjct: 1 MAAPSGGFQPRERRGGEPEEGWDAVVPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKT 60
Query: 277 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 456
YELLNCDKHKS+LLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
Sbjct: 61 YELLNCDKHKSVLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 457 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 636
NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 180
Query: 637 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 816
PVVSDVRELVPSSDP+VFVVGAFAHGQV VEYTEKMVSISNYPLSAALTCAKLTTAFEEV
Sbjct: 181 PVVSDVRELVPSSDPIVFVVGAFAHGQVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240
Query: 817 WRVI 828
W VI
Sbjct: 241 WGVI 244
>ref|XP_549557.2| PREDICTED: similar to Probable ribosome biogenesis protein NEP1
(C2f protein) isoform 1 [Canis familiaris].
Length = 73
Score = 140 bits (352), Expect = 2e-33
Identities = 70/73 (95%), Positives = 71/73 (97%)
Frame = +1
Query: 610 MKIGTSFSIPVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCA 789
MKIGTSFSIPVVSDVRELVPSSDP+VFVVGAFAHGQV VEYTEKMVSISNYPLSAALTCA
Sbjct: 1 MKIGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGQVSVEYTEKMVSISNYPLSAALTCA 60
Query: 790 KLTTAFEEVWRVI 828
KLTTAFEEVW VI
Sbjct: 61 KLTTAFEEVWGVI 73
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,983,781
Number of extensions: 1126909
Number of successful extensions: 4186
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4092
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003144
(986 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006322.4| ribosomal RNA small subunit methyltransferase N... 455 e-128
>ref|NP_006322.4| ribosomal RNA small subunit methyltransferase NEP1 [Homo sapiens].
Length = 244
Score = 455 bits (1170), Expect = e-128
Identities = 225/244 (92%), Positives = 233/244 (95%)
Frame = +1
Query: 97 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 276
MAA S GF+PRER GEQ +DWDA+ PKRPRLGAG+K GGRRLIVVLEGASLETVKVGKT
Sbjct: 1 MAAPSDGFKPRERSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKT 60
Query: 277 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 456
YELLNCDKHKS+LLKNGRDPGE RPDI HQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
Sbjct: 61 YELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 457 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 636
NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMK+GTSFSI
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSI 180
Query: 637 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 816
PVVSDVRELVPSSDP+VFVVGAFAHG+V VEYTEKMVSISNYPLSAALTCAKLTTAFEEV
Sbjct: 181 PVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240
Query: 817 WRVI 828
W VI
Sbjct: 241 WGVI 244
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,236,906
Number of extensions: 1107196
Number of successful extensions: 4688
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4518
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003144
(986 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038564.1| ribosomal RNA small subunit methyltransferase N... 446 e-125
>ref|NP_038564.1| ribosomal RNA small subunit methyltransferase NEP1 [Mus musculus].
Length = 244
Score = 446 bits (1147), Expect = e-125
Identities = 221/244 (90%), Positives = 231/244 (94%)
Frame = +1
Query: 97 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 276
M+AASGGFQPRERR QE+DW+ PK+ RLGAGSK GGRRLIVVLEGASLETVKVGKT
Sbjct: 1 MSAASGGFQPRERRFSVQEQDWETTPPKKLRLGAGSKCGGRRLIVVLEGASLETVKVGKT 60
Query: 277 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 456
YELLNCD+HKSMLLKNGRDPGEVRPDI HQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
Sbjct: 61 YELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 457 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 636
NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFS+
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSV 180
Query: 637 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 816
+SD+RELVPSSDPVVFVVGAFAHG+V VEYTEKMVSISNYPLSAALTCAK+TTAFEEV
Sbjct: 181 EDISDIRELVPSSDPVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFEEV 240
Query: 817 WRVI 828
W VI
Sbjct: 241 WGVI 244
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,155,617
Number of extensions: 933164
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4553
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003144
(986 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230407.1| EMG1 nucleolar protein homolog [Sus scrofa]. 487 e-138
>ref|NP_001230407.1| EMG1 nucleolar protein homolog [Sus scrofa].
Length = 244
Score = 487 bits (1253), Expect = e-138
Identities = 244/244 (100%), Positives = 244/244 (100%)
Frame = +1
Query: 97 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 276
MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT
Sbjct: 1 MAAASGGFQPRERRAGEQEEDWDAVAPKRPRLGAGSKTGGRRLIVVLEGASLETVKVGKT 60
Query: 277 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 456
YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
Sbjct: 61 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120
Query: 457 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 636
NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 180
Query: 637 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 816
PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV
Sbjct: 181 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240
Query: 817 WRVI 828
WRVI
Sbjct: 241 WRVI 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,340,438
Number of extensions: 705792
Number of successful extensions: 3064
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3007
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003144
(986 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 513 e-143
>Sscrofa_Chr05
|| Length = 111506441
Score = 513 bits (259), Expect = e-143
Identities = 265/267 (99%)
Strand = Plus / Minus
Query: 1 cactttcaaaatggccgacggaaggaagcatgcgattgggtggagcacgaggtcttaatt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 66187611 cactttcaaaatggccgacggaaggaagcatgcgattgggtggagcacgaggtcctaatt 66187552
Query: 61 tgagaaaatcagcgcaatttccgatttggttgcaagatggctgcggccagtggtggattc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 66187551 tgagaaaatcagcgcaatttccgatttggttgcaagatggctgcgcccagtggtggattc 66187492
Query: 121 caacctcgtgagcggcgcgccggggagcaggaagaagactgggatgctgtggcgcccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187491 caacctcgtgagcggcgcgccggggagcaggaagaagactgggatgctgtggcgcccaag 66187432
Query: 181 cggccccgactcggggcgggaagcaagaccggaggccgcagactcattgtggtgctggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187431 cggccccgactcggggcgggaagcaagaccggaggccgcagactcattgtggtgctggaa 66187372
Query: 241 ggggccagcctggagacagtcaaggta 267
|||||||||||||||||||||||||||
Sbjct: 66187371 ggggccagcctggagacagtcaaggta 66187345
Score = 504 bits (254), Expect = e-140
Identities = 254/254 (100%)
Strand = Plus / Minus
Query: 715 caggtggacgtggagtacacagagaagatggtgtccatcagcaactaccccctctctgct 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66182723 caggtggacgtggagtacacagagaagatggtgtccatcagcaactaccccctctctgct 66182664
Query: 775 gccctcacctgtgcgaaactcaccaccgccttcgaggaagtgtggagggtcatctgacga 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66182663 gccctcacctgtgcgaaactcaccaccgccttcgaggaagtgtggagggtcatctgacga 66182604
Query: 835 tagaacctcgtcccacacagagactgtggacattgctccccgaccctgtgctcagcagac 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66182603 tagaacctcgtcccacacagagactgtggacattgctccccgaccctgtgctcagcagac 66182544
Query: 895 tgctgccaaccttcctgcaccgagacgaggctgtacatctgctgcgtgtttattttataa 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66182543 tgctgccaaccttcctgcaccgagacgaggctgtacatctgctgcgtgtttattttataa 66182484
Query: 955 attactgttcttgc 968
||||||||||||||
Sbjct: 66182483 attactgttcttgc 66182470
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 566 aggtgattaagaatccagtatcagatcacttcccagttggatgtatgaaaattggcactt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66183188 aggtgattaagaatccagtatcagatcacttcccagttggatgtatgaaaattggcactt 66183129
Query: 626 ctttctccatcccagttgtcagtgatgtgcgagagctggtgcccagcagtgaccctgttg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66183128 ctttctccatcccagttgtcagtgatgtgcgagagctggtgcccagcagtgaccctgttg 66183069
Query: 686 tcttcgtggtgggggcctttgcccatggccaggt 719
||||||||||||||||||||||||||||||||||
Sbjct: 66183068 tcttcgtggtgggggcctttgcccatggccaggt 66183035
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 364 cagagtttactgatgctgatggacagtcccctgaaccgggctggcttgctacaggtttat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66183892 cagagtttactgatgctgatggacagtcccctgaaccgggctggcttgctacaggtttat 66183833
Query: 424 atccacacacagaagaacgtgctgattgaagtgaacccccagactcgaattcccagaacc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66183832 atccacacacagaagaacgtgctgattgaagtgaacccccagactcgaattcccagaacc 66183773
Query: 484 tttgaccgtttctgtggcctcatgg 508
|||||||||||||||||||||||||
Sbjct: 66183772 tttgaccgtttctgtggcctcatgg 66183748
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 263 aggtagggaagacgtatgagctgcttaactgtgacaagcacaagtccatgttgttgaaga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66184101 aggtagggaagacgtatgagctgcttaactgtgacaagcacaagtccatgttgttgaaga 66184042
Query: 323 atggacgggaccctggcgaagtgagaccggacatagctcaccag 366
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66184041 atggacgggaccctggcgaagtgagaccggacatagctcaccag 66183998
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 508 gttcagcttttacacaaactcagtgttcgagcagctgatggcccccagaagctcttgaag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66183332 gttcagcttttacacaaactcagtgttcgagcagctgatggcccccagaagctcttgaag 66183273
Query: 568 gtga 571
||||
Sbjct: 66183272 gtga 66183269
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,820,088
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 6
Length of query: 986
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 965
Effective length of database: 2,808,413,156
Effective search space: 2710118695540
Effective search space used: 2710118695540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)