Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003163
(1134 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029663.1| PDZ and LIM domain protein 4 [Bos taurus]. 642 0.0
Alignment gi|NP_001029818.1| PDZ and LIM domain protein 3 [Bos taurus]. 268 7e-72
Alignment gi|NP_001030532.1| PDZ and LIM domain protein 1 [Bos taurus]. 268 9e-72
Alignment gi|NP_001029602.1| PDZ and LIM domain protein 2 [Bos taurus]. 162 7e-40
Alignment gi|NP_001106722.1| PDZ and LIM domain protein 7 isoform 2 [Bos ... 129 6e-30
Alignment gi|NP_001030493.1| LIM domain binding 3 [Bos taurus]. 115 7e-26
Alignment gi|NP_001017947.1| PDZ and LIM domain protein 7 isoform 1 [Bos ... 100 2e-21
Alignment gi|NP_001070912.1| PDZ and LIM domain 5 [Bos taurus]. 93 4e-19
Alignment gi|NP_001077220.1| synaptopodin-2 [Bos taurus]. 67 3e-11
Alignment gi|NP_001192491.1| Wilms tumor protein 1-interacting protein [B... 57 2e-08
>ref|NP_001029663.1| PDZ and LIM domain protein 4 [Bos taurus].
Length = 331
Score = 642 bits (1657), Expect = 0.0
Identities = 309/331 (93%), Positives = 313/331 (94%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAA AALCPGDLIQAINGESTELM
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQNRIKGC DHLTLSVSRPE RSWPSTPE+NKAQAHRIHID EAQDGSP TSRRPS
Sbjct: 61 THLEAQNRIKGCRDHLTLSVSRPEGRSWPSTPEDNKAQAHRIHIDSEAQDGSPLTSRRPS 120
Query: 447 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 626
A G GPEDGR GLGSPYGQSPRLP PHNGS+SEA +LAQM LHVSPPHS DPARGL RS
Sbjct: 121 ATGLGPEDGRPGLGSPYGQSPRLPVPHNGSNSEATLLAQMGALHVSPPHSTDPARGLPRS 180
Query: 627 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPA 806
RDCGVDLGSEVYRML+EPAEP AAEPKQSGSFRYLQGMLEAGE GERPGP GPRNLKP A
Sbjct: 181 RDCGVDLGSEVYRMLREPAEPAAAEPKQSGSFRYLQGMLEAGEGGERPGPGGPRNLKPTA 240
Query: 807 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 986
SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER
Sbjct: 241 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 300
Query: 987 LYCESHAKARVKPPEGYDVVAVYPNAKVELV 1079
LYCESHAKARVKPPEGYDVVAVYPNAKVELV
Sbjct: 301 LYCESHAKARVKPPEGYDVVAVYPNAKVELV 331
>ref|NP_001029818.1| PDZ and LIM domain protein 3 [Bos taurus].
Length = 316
Score = 268 bits (685), Expect = 7e-72
Identities = 150/333 (45%), Positives = 201/333 (60%), Gaps = 7/333 (2%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSP---ATS 434
TH +AQ+RIK L L + R E+R W P E+ KA +I+++ E Q+ P A +
Sbjct: 61 THADAQDRIKAAGHQLCLKIDRAEARLWSPQVTEDGKAHPFKINLESEPQEFKPIGAAHN 120
Query: 435 RR--PSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPA 608
RR P A +D R + + Y L ++ S+ + + Q+ L S P
Sbjct: 121 RRAQPFVAAANIDDKRQVVSASYNSPIGL---YSTSNIQDALHGQLRGLIPSSP------ 171
Query: 609 RGLQRSRDCGVDLGSEVYRMLQEPA-EPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGP 785
Q V S+VYRML + EP +P+QSGSFR LQ ++ G PAG
Sbjct: 172 ---QNEPTASVPPESDVYRMLHDNRNEP--TQPRQSGSFRVLQELVNDGADDR---PAGT 223
Query: 786 RNLKPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRG 965
R+++ P +K+ G Q +P C +CG GIVG +VKARDK HPECF+C+DC LNLKQ+G
Sbjct: 224 RSVRAPVTKVHGGAGGTQKMPFCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKG 283
Query: 966 YFFLDERLYCESHAKARVKPPEGYDVVAVYPNA 1064
YFF++ LYCE+HA+AR++PPEGYD V +YP A
Sbjct: 284 YFFVEGELYCETHARARMRPPEGYDTVTLYPKA 316
>ref|NP_001030532.1| PDZ and LIM domain protein 1 [Bos taurus].
Length = 328
Score = 268 bits (684), Expect = 9e-72
Identities = 143/326 (43%), Positives = 199/326 (61%), Gaps = 6/326 (1%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA LC GD+I AI+GE+T MTHLE
Sbjct: 6 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIGNLCVGDVITAIDGENTSNMTHLE 65
Query: 279 AQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSPATSRR----- 440
AQN+IKGC D++TL+V+R E + W P EE K +++++ E Q+ S
Sbjct: 66 AQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEALHIGSAHNRSAV 125
Query: 441 PSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQ 620
P A + + Y L + N SS + ++ + ++D + Q
Sbjct: 126 PFTASPAFSSAPRVITNQYNNPAGLYSSENISSFNNALESKTAASGQENGRALDHS---Q 182
Query: 621 RSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKP 800
+D SEVY+MLQE E + PKQS SF LQ +LE+ E G+ P+G R++K
Sbjct: 183 LPSGLVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKA 241
Query: 801 PASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLD 980
P +K+ A + Q LP C +CG GIVG VK R++ HPEC++C+DCG NLKQ+G+FF++
Sbjct: 242 PVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRERHRHPECYVCTDCGTNLKQKGHFFVE 301
Query: 981 ERLYCESHAKARVKPPEGYDVVAVYP 1058
+++YCE HA+ RV PPEGYDV+ V+P
Sbjct: 302 DQIYCEKHARERVTPPEGYDVITVFP 327
>ref|NP_001029602.1| PDZ and LIM domain protein 2 [Bos taurus].
Length = 348
Score = 162 bits (409), Expect = 7e-40
Identities = 125/345 (36%), Positives = 169/345 (48%), Gaps = 31/345 (8%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +V + GP+PWGFR+ GGRDF P+ +++V KA A L PGD+I +INGES + M
Sbjct: 1 MALTVDVVGPAPWGFRISGGRDFHTPIMVTKVTERGKAEAADLRPGDIIVSINGESAKDM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQ--------AHRIHIDPEA---- 410
H EAQ++I+ L L + RP++ S E+ + + R H D +A
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRPQAASPGQANGESSLEVLATRFQSSRRTHTDSQASLSP 120
Query: 411 QDGSPATSRRPSA--AGTGP-EDGRSGLGSPYGQSPRLPAPH------NGSSSEAPMLAQ 563
+ SP + P++ A TG S Y P A H GS + A
Sbjct: 121 RPCSPFFTLPPTSPQAPTGEVVTSHSFQSLAYSLEP-ASADHLYYGGRRGSRQASLSPAG 179
Query: 564 MSTLHVSPPHSIDPARGLQRSRDCGVDLG--------SEVYRMLQEPAEPMAAEPKQSGS 719
S + V PP AR SR V G SEV++MLQE E A P+QS S
Sbjct: 180 DSAVLVLPPPPSPGARS-SSSRLSVVSEGESHLLREDSEVFKMLQENREARMA-PRQSSS 237
Query: 720 FRYLQGMLEAGESGERPGPAGPRNLKPPAS-KLGAPLSGLQGLPECTRCGHGIVGTIVKA 896
FR LQ LEA E G P P +L P +S L+ L C +C I V+
Sbjct: 238 FRLLQEALEAEERGGTPAYL-PSSLSPQSSLPTSRALASPPKLHTCEKCNTSIANQAVRI 296
Query: 897 RDKLY-HPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPP 1028
++ Y HP C+ C+DCGLNLK RG+F++ + LYCE HA+ R P
Sbjct: 297 QEGRYRHPGCYTCADCGLNLKMRGHFWVGDELYCEKHARQRYSAP 341
>ref|NP_001106722.1| PDZ and LIM domain protein 7 isoform 2 [Bos taurus].
Length = 424
Score = 129 bits (323), Expect = 6e-30
Identities = 100/329 (30%), Positives = 150/329 (45%), Gaps = 20/329 (6%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
V L GP+PWGFRL GG+DF+VPL+ISR+ G KAAQA + GD + +I+GE+ +TH+E
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGGLTHIE 65
Query: 279 AQNRIKGCHDHLTLSVSRPE-SRSWP---STPEEN-------KAQAHRIHIDPEAQDGSP 425
AQN+I+ C + L+LS+SR + ++S P TP++ A R+ D E P
Sbjct: 66 AQNKIRACGERLSLSLSRAQPAQSKPQKVQTPDKQPLRPLVPDASKQRLMEDTEDWRPRP 125
Query: 426 ATSRRPSAAGTGPEDGRSGLGSP-------YGQSPRLPAPHNGSSS-EAPMLAQMSTLHV 581
T + S G + P Q PR AP S++ + P +
Sbjct: 126 GTGQSRSFRILAHLTGTEFMQDPDEEHLKKSSQVPRTEAPTPASATPQEPWPGPTTPSPT 185
Query: 582 S-PPHSIDPARGLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGES 758
S PP ++DPA + + D + +L +P P Q+ + +++A
Sbjct: 186 SRPPWAVDPAFAERYAPD-------KTSTVLTRHTQPATPTPMQNRT-----SIVQAAAG 233
Query: 759 GERPGPAGPRNLKPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSD 938
G G G P C +C I G + A + YHPE F+CS
Sbjct: 234 GGHGGGGGSNG----------------KTPVCHQCHKVIRGRYLVALGRAYHPEEFVCSQ 277
Query: 939 CGLNLKQRGYFFLDERLYCESHAKARVKP 1025
CG L++ G+F ++C R P
Sbjct: 278 CGKVLEEGGFFEEKGAIFCPPCYDVRYAP 306
>ref|NP_001030493.1| LIM domain binding 3 [Bos taurus].
Length = 330
Score = 115 bits (288), Expect = 7e-26
Identities = 85/236 (36%), Positives = 124/236 (52%), Gaps = 7/236 (2%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQN+IK +L+L++ + R P + Q+ + + P +D + T+ +
Sbjct: 61 THLEAQNKIKSASYNLSLTLQK-SKRPIPISTAAPPIQS-PLPVIPHQKDPALDTNSSLA 118
Query: 447 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 626
AA PE R+G G+P +P L + S S+ P+ + S S P G + S
Sbjct: 119 AASPHPE-ARAGPGTP--GTPELGQIFSSSFSQTPVFS--SHTEASDPGPPRGGPGAKIS 173
Query: 627 RDCGVD-------LGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPG 773
+ +D LGS R P +AE + R + M + G+ G
Sbjct: 174 LEGALDSLSPKAPLGSSQPRQYNNPIGLYSAE-----TLREMAQMYQMSRRGKASG 224
>ref|NP_001017947.1| PDZ and LIM domain protein 7 isoform 1 [Bos taurus].
Length = 222
Score = 100 bits (250), Expect = 2e-21
Identities = 58/142 (40%), Positives = 81/142 (57%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
V L GP+PWGFRL GG+DF+VPL+ISR+ G KAAQA + GD + +I+GE+ +TH+E
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGGLTHIE 65
Query: 279 AQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPSAAGT 458
AQN+I+ C + L+LS+SR + S P++ A A DP +P+ S +A
Sbjct: 66 AQNKIRACGERLSLSLSRAQPAQ--SKPQKALAPA----ADPPRYTFAPSASLNKTARPF 119
Query: 459 GPEDGRSGLGSPYGQSPRLPAP 524
G GQ R P
Sbjct: 120 GANPPADSAPQQNGQPLRPLVP 141
>ref|NP_001070912.1| PDZ and LIM domain 5 [Bos taurus].
Length = 234
Score = 93.2 bits (230), Expect = 4e-19
Identities = 44/80 (55%), Positives = 61/80 (76%)
Frame = +3
Query: 93 HSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTH 272
+SV+L GP+PWGFRL GG+DF++PLTIS + G KA+QA + GD++ +I+G S MTH
Sbjct: 4 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAHGMTH 63
Query: 273 LEAQNRIKGCHDHLTLSVSR 332
LEAQN+IKGC L +++ R
Sbjct: 64 LEAQNKIKGCTGSLNMTLQR 83
>ref|NP_001077220.1| synaptopodin-2 [Bos taurus].
Length = 1259
Score = 67.0 bits (162), Expect = 3e-11
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 5/177 (2%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
+++ G +PWGFRL GG++ PL ++++ + SKA+ + LC GD + +ING +T+ E
Sbjct: 9 ISMTGGAPWGFRLQGGKEQQQPLQVAKIRSQSKASGSGLCEGDEVVSINGNPCADLTYPE 68
Query: 279 AQNRIKGCHDHLTLSVSRPESR-SWPSTPE-ENKAQ---AHRIHIDPEAQDGSPATSRRP 443
++ D L + V RP S S S E ENK Q H +++ PAT +
Sbjct: 69 VIKLMESITDSLQMLVKRPSSGISETSISETENKNQENVTHEGYVESTTLQIRPATKSQY 128
Query: 444 SAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARG 614
P G+P + A +GS E LA PH+ D G
Sbjct: 129 REFYIVPIKS----GAPLAEEQASGAGFSGSIKEETGLA---------PHTSDSESG 172
>ref|NP_001192491.1| Wilms tumor protein 1-interacting protein [Bos taurus].
Length = 430
Score = 57.4 bits (137), Expect = 2e-08
Identities = 52/200 (26%), Positives = 75/200 (37%), Gaps = 6/200 (3%)
Frame = +3
Query: 417 GSPATSRRPSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSP-PH 593
GSP S S G G RS G G R +P +G S P P
Sbjct: 87 GSPRASLAGSDGGGGSGSARSS-GISLGYDQRHGSPRSGRSDP----------RAGPGPP 135
Query: 594 SIDPARGLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPG 773
S+ AR S G+ +L A P+ +G + L+ E
Sbjct: 136 SVGSARSSVSSLGSRGSAGAYPDLLLPGACPAPARSPEPAGPAPFALPSLQLPPGREGGP 195
Query: 774 PAGPRNLKPPASKLGAPLSGLQGLPE---CTRCGHGIVGT--IVKARDKLYHPECFMCSD 938
A R L+ +L L C +CG GI G +A LYH +CF C+
Sbjct: 196 SAAERRLEALTRELERALEARTARDYFGICIKCGLGIYGARQACQAMGSLYHTDCFTCNS 255
Query: 939 CGLNLKQRGYFFLDERLYCE 998
CG L+ + ++ + E++YC+
Sbjct: 256 CGRRLRGKAFYNVGEKVYCQ 275
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,032,163
Number of extensions: 1320904
Number of successful extensions: 9061
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 8891
Number of HSP's successfully gapped: 24
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003163
(1134 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538619.2| PREDICTED: similar to PDZ and LIM domain 4 [Can... 608 e-174
Alignment gi|XP_848740.1| PREDICTED: similar to PDZ and LIM domain 3 isof... 263 2e-70
Alignment gi|XP_540022.2| PREDICTED: similar to PDZ and LIM domain 3 isof... 248 1e-65
Alignment gi|XP_534974.2| PREDICTED: similar to PDZ and LIM domain 1 (elf... 231 7e-61
Alignment gi|XP_543249.2| PREDICTED: similar to PDZ and LIM domain 2 isof... 172 5e-43
Alignment gi|XP_856879.1| PREDICTED: similar to PDZ and LIM domain 3 isof... 121 1e-27
Alignment gi|XP_865000.1| PREDICTED: similar to LIM domain binding 3 isof... 120 2e-27
Alignment gi|XP_848906.1| PREDICTED: similar to PDZ and LIM domain 1 (elf... 119 4e-27
Alignment gi|XP_536411.2| PREDICTED: similar to LIM domain binding 3 isof... 114 2e-25
Alignment gi|XP_865054.1| PREDICTED: similar to LIM domain binding 3 isof... 114 2e-25
>ref|XP_538619.2| PREDICTED: similar to PDZ and LIM domain 4 [Canis familiaris].
Length = 393
Score = 608 bits (1569), Expect = e-174
Identities = 296/332 (89%), Positives = 303/332 (91%)
Frame = +3
Query: 84 AMPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTEL 263
AMPHSVTLRGPSPWGFRLVGGRDFS PLTISRVHAGSKAA AALCPGDLIQAINGESTEL
Sbjct: 62 AMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTEL 121
Query: 264 MTHLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRP 443
MTHLEAQNRIKGCHDHL LSVSRPE RSWP PE++KAQA RIHIDPE QDGSPATSRRP
Sbjct: 122 MTHLEAQNRIKGCHDHLILSVSRPEGRSWPGAPEDSKAQAQRIHIDPEVQDGSPATSRRP 181
Query: 444 SAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQR 623
SA G G EDGR GLGSPYGQ LP HNGSSSEA +L QMSTLHVSP HS D ARGL R
Sbjct: 182 SATGIGLEDGRPGLGSPYGQPSHLPFHHNGSSSEATLLTQMSTLHVSPLHSPDTARGLPR 241
Query: 624 SRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPP 803
SRDCGVDLGSEVYRML+EPAEP+A+EPKQSGSFRYLQGMLEAGE GER GP+ PRN KP
Sbjct: 242 SRDCGVDLGSEVYRMLREPAEPLASEPKQSGSFRYLQGMLEAGEGGERLGPSSPRNPKPT 301
Query: 804 ASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDE 983
ASKLG PLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDE
Sbjct: 302 ASKLGTPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDE 361
Query: 984 RLYCESHAKARVKPPEGYDVVAVYPNAKVELV 1079
RLYCESHAKARVKPPEGYDVVAVYPNAKVELV
Sbjct: 362 RLYCESHAKARVKPPEGYDVVAVYPNAKVELV 393
>ref|XP_848740.1| PREDICTED: similar to PDZ and LIM domain 3 isoform 2 [Canis
familiaris].
Length = 317
Score = 263 bits (673), Expect = 2e-70
Identities = 148/333 (44%), Positives = 199/333 (59%), Gaps = 7/333 (2%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSP---ATS 434
TH +AQ+RIK L L + R E+R W P E+ KA +I+++ E Q+ P A +
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETRLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
Query: 435 RR--PSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPA 608
RR P A +D R + + Y L ++ S+ + + Q+ L S P +
Sbjct: 121 RRAQPFVAAANIDDKRQVVSASYNSPIGL---YSTSNIQDALHGQLRGLIPSSPQN---- 173
Query: 609 RGLQRSRDCGVDLGSEVYRMLQEPA-EPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGP 785
V S+VYRML + EP +P+QSGSFR LQ ++ G PAG
Sbjct: 174 ----EPTTTSVPPQSDVYRMLHDNRNEP--TQPRQSGSFRVLQELVNDGPDDR---PAGT 224
Query: 786 RNLKPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRG 965
R+++ P +K+ Q +P C +CG GIVG +VKARDK HPECF+C+DC LNLKQ+G
Sbjct: 225 RSVRAPVTKVHGGAGSTQKMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKG 284
Query: 966 YFFLDERLYCESHAKARVKPPEGYDVVAVYPNA 1064
YFF++ LYCE+HA+AR +PPEGYD V +YP A
Sbjct: 285 YFFVEGELYCETHARARTRPPEGYDTVTLYPKA 317
>ref|XP_540022.2| PREDICTED: similar to PDZ and LIM domain 3 isoform 1 [Canis
familiaris].
Length = 277
Score = 248 bits (632), Expect = 1e-65
Identities = 141/328 (42%), Positives = 185/328 (56%), Gaps = 2/328 (0%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSPATSRRP 443
TH +AQ+RIK L L + R E+R W P E+ KA +I+++ E QD + +
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETRLWSPQVSEDGKAHPFKINLESEPQDVNYFEHK-- 118
Query: 444 SAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQR 623
HN V P I P+R +
Sbjct: 119 ---------------------------HN----------------VRPKPFIIPSRSSEP 135
Query: 624 SRDCGVDLGSEVYRMLQEPA-EPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKP 800
+ V S+VYRML + EP +P+QSGSFR LQ ++ G PAG R+++
Sbjct: 136 TTT-SVPPQSDVYRMLHDNRNEP--TQPRQSGSFRVLQELVNDGPDDR---PAGTRSVRA 189
Query: 801 PASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLD 980
P +K+ Q +P C +CG GIVG +VKARDK HPECF+C+DC LNLKQ+GYFF++
Sbjct: 190 PVTKVHGGAGSTQKMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVE 249
Query: 981 ERLYCESHAKARVKPPEGYDVVAVYPNA 1064
LYCE+HA+AR +PPEGYD V +YP A
Sbjct: 250 GELYCETHARARTRPPEGYDTVTLYPKA 277
>ref|XP_534974.2| PREDICTED: similar to PDZ and LIM domain 1 (elfin) [Canis
familiaris].
Length = 420
Score = 231 bits (590), Expect = 7e-61
Identities = 133/314 (42%), Positives = 183/314 (58%), Gaps = 17/314 (5%)
Frame = +3
Query: 168 TISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPESRS 347
T RV GSKAA A LC GD+I AI+GE+T MTHLEAQN+IKGC D++TL+V+R E +
Sbjct: 120 TRGRVTPGSKAAAANLCIGDVITAIDGENTSGMTHLEAQNKIKGCTDNMTLTVTRSEQKI 179
Query: 348 W-PSTPEENKAQAHRIHIDPEAQD----------------GSPATSRRPSAAGTGPEDGR 476
W P EE K +++++ E Q+ SPA+S P T +
Sbjct: 180 WSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSSAPRVI-TNQYNNP 238
Query: 477 SGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRSRDCGVDLGSE 656
+GL S S A + +++ + H PP + +D SE
Sbjct: 239 AGLYSSENISNFNNALESKTAASGQETNGRALDHSQPPSGLV------------IDKESE 286
Query: 657 VYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPASKLGAPLSGL 836
VY+MLQE E + PKQS SF LQ +LE+ E G+ P+G R++K P +K+ A +
Sbjct: 287 VYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNA 345
Query: 837 QGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKAR 1016
Q LP C +CG GIVG VK RD+ HPEC++C+DCG NLKQ+G+FF+++++YCE HA+ R
Sbjct: 346 QKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARER 405
Query: 1017 VKPPEGYDVVAVYP 1058
V PPEGYDVV V+P
Sbjct: 406 VTPPEGYDVVTVFP 419
>ref|XP_543249.2| PREDICTED: similar to PDZ and LIM domain 2 isoform 2 [Canis
familiaris].
Length = 358
Score = 172 bits (436), Expect = 5e-43
Identities = 128/360 (35%), Positives = 174/360 (48%), Gaps = 45/360 (12%)
Frame = +3
Query: 84 AMPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTEL 263
A+ +V + GP PWGFR+ GGRDF P+ +++V KA A L PGD+I AINGES E
Sbjct: 2 ALTLTVDVAGPGPWGFRITGGRDFHSPIMVTKVTERGKAEAADLRPGDIIVAINGESAEG 61
Query: 264 MTHLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQ--------AHRIHIDPEA--- 410
M H EAQ++I+ L L + R + S T E+ + + R H D ++
Sbjct: 62 MLHAEAQSKIRHSPSPLRLQLDRSPAASPRQTNGESSVEVLATRFQGSVRTHSDSQSSLR 121
Query: 411 -----------QDGSPATSRRPSAAGTGPEDG------RSGLGSP---------YGQSPR 512
Q GSP ++ PS+ T P + ++ SP YG P
Sbjct: 122 SSCSSPCSSSPQPGSPFSALPPSSPHTLPGEAVVSRSFQNLAYSPGPTAANRFSYGGRPG 181
Query: 513 LPAPHNGSSSEAPMLA---QMSTLHVSPPHSIDPARGLQRSRDCGVDLGSEVYRMLQEPA 683
G + +A +L SP S D RG +D SEVY+MLQE
Sbjct: 182 SRQAGLGGAGDAAVLVLPPSPGPCPSSPRLSADSERGSHL-----LDEDSEVYKMLQENR 236
Query: 684 EPMAAEPKQSGSFRYLQGMLEAGESGERPG--PA--GPRNLKPPASKLGAPLSGLQGLPE 851
E A P+QS SFR LQ LEA E G P P+ P++ P + L P L
Sbjct: 237 EGRVA-PRQSSSFRLLQEALEAEEKGGTPAFLPSLLSPQSSLPTSRALATP----PKLHT 291
Query: 852 CTRCGHGIVGTIVKARDKLY-HPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPP 1028
C +CG IV V+ ++ Y HP C+ C+DCGLNLK RG+F++ + LYCE HA+ R P
Sbjct: 292 CEKCGTSIVNHAVRIQEGRYRHPGCYSCADCGLNLKMRGHFWVGDELYCEKHARQRYSSP 351
>ref|XP_856879.1| PREDICTED: similar to PDZ and LIM domain 3 isoform 3 [Canis
familiaris].
Length = 174
Score = 121 bits (304), Expect = 1e-27
Identities = 67/143 (46%), Positives = 88/143 (61%), Gaps = 6/143 (4%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSP---ATS 434
TH +AQ+RIK L L + R E+R W P E+ KA +I+++ E Q+ P A +
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETRLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
Query: 435 RR--PSAAGTGPEDGRSGLGSPY 497
RR P A +D R + + Y
Sbjct: 121 RRAQPFVAAANIDDKRQVVSASY 143
>ref|XP_865000.1| PREDICTED: similar to LIM domain binding 3 isoform 11 [Canis
familiaris].
Length = 463
Score = 120 bits (302), Expect = 2e-27
Identities = 106/343 (30%), Positives = 151/343 (44%), Gaps = 39/343 (11%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSR-----PESRSWPSTPEENKAQAHRIHIDPEAQDGSPAT 431
THLEAQN+IK +L+L++ + P S + P H+ + + + AT
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANLAKAT 120
Query: 432 SRRPSA-------AGTGPEDG-------RSGLGSP-----YGQSPRLPAPHNGSSSEAPM 554
S P++ A P+ R + P YG SP PA N S P+
Sbjct: 121 SPAPASHPYSEASAAPAPKPRVVTTASIRPSVYQPEPCSWYGPSP--PAS-NPPSPVTPL 177
Query: 555 LAQMSTLHVSP-----PHSIDPARGLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGS 719
A + P P++ PA G S G P P A+ S S
Sbjct: 178 PAATYSPSPGPSYSPAPYTPSPAPGPGYSPTPSAAYGGGPVESASRP--PWVAD--DSFS 233
Query: 720 FRYLQGMLEAGESGERPGPAGPRNLKPPASKLGAPLSGL----------QGLPECTRCGH 869
++ G + S + P G PP ++ G+ P C C +
Sbjct: 234 QKFAPGKSSSSASRQTL-PRGAPTYGPPGPQVSPLARGIVQRAERFPASSRTPLCGHCNN 292
Query: 870 GIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCE 998
I G + A + +HPE F C+ C +L + +YCE
Sbjct: 293 VIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQSNVYCE 335
>ref|XP_848906.1| PREDICTED: similar to PDZ and LIM domain 1 (elfin) [Canis
familiaris].
Length = 248
Score = 119 bits (299), Expect = 4e-27
Identities = 80/218 (36%), Positives = 111/218 (50%), Gaps = 10/218 (4%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
+ L+GP W F LVGG+DF PL ISRV GSK A A LC GD+I AINGE++ MTHLE
Sbjct: 29 IVLQGPGLWSFHLVGGKDFEQPLAISRVTPGSKFAGANLCIGDVITAINGENSSGMTHLE 88
Query: 279 AQNRIKGCHDHLTLSVSRPESRSWPS-TPEENKAQAHRIHIDPEAQD-----GSPATSRR 440
AQN+IKGC D++TL+V+R E ++W S EE K +++++ E Q+ + S
Sbjct: 89 AQNKIKGCMDNMTLTVTRYEQKTWSSLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAM 148
Query: 441 PSAAGTGPEDGRSGLGSPYGQSPRLPAPHN----GSSSEAPMLAQMSTLHVSPPHSIDPA 608
P A + + Y L + N ++ E+ A + P
Sbjct: 149 PFTASLASSSAPRVITNQYNNPAGLYSSENISNFNNTLESKTAASGQETNGRALDHSQPL 208
Query: 609 RGLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSF 722
GL ++ SEVY+ML E E EP Q+ F
Sbjct: 209 SGLVNDKE------SEVYKMLHEKQE--LNEPSQAIHF 238
>ref|XP_536411.2| PREDICTED: similar to LIM domain binding 3 isoform 1 [Canis
familiaris].
Length = 632
Score = 114 bits (285), Expect = 2e-25
Identities = 94/273 (34%), Positives = 128/273 (46%), Gaps = 32/273 (11%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSV---SRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSR 437
THLEAQN+IK +L+L++ RP S + P ++ DP T+R
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKDPAGDMSGSPTAR 120
Query: 438 RPSAAG---TGPEDG--------RSGLGSPYGQSPR---LPAPHNGSSS--EAPMLAQMS 569
P G GP R G G+ PR PA +N A L +M+
Sbjct: 121 SPGPLGPPELGPSSSPSFSQSPPRGGPGTEGAPGPRGQGRPAQYNNPIGLYSAETLREMA 180
Query: 570 TLHVSPPHSIDPARGLQRS----RDCGVDLGSEVYRML-------QEPAEPMAAEPK--Q 710
++ GL +D VD S VY+ + ++ A+ A Q
Sbjct: 181 QVYRMSLGGKAWGAGLPGGSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQ 240
Query: 711 SGSFRYLQGMLEAGESGERPGPAGPRNLKPPAS 809
S SFR L + E + P R +P AS
Sbjct: 241 SRSFRIL-AQMTGTEYMQDPDEEALRRSRPQAS 272
>ref|XP_865054.1| PREDICTED: similar to LIM domain binding 3 isoform 13 [Canis
familiaris].
Length = 690
Score = 114 bits (284), Expect = 2e-25
Identities = 70/156 (44%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSV---SRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSR 437
THLEAQN+IK +L+L++ RP S + P ++ DP T+R
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKDPAGDMSGSPTAR 120
Query: 438 RPSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSE 545
P G PE G S S + QSP P G +E
Sbjct: 121 SPGPLGP-PELGPSSSPS-FSQSP----PRGGPGTE 150
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,570,964
Number of extensions: 1321801
Number of successful extensions: 9221
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 9065
Number of HSP's successfully gapped: 42
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003163
(1134 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003678.2| PDZ and LIM domain protein 4 isoform 1 [Homo sa... 621 e-178
Alignment gi|NP_001124499.1| PDZ and LIM domain protein 4 isoform 2 [Homo... 408 e-114
Alignment gi|NP_001107579.1| PDZ and LIM domain protein 3 isoform b [Homo... 271 6e-73
Alignment gi|NP_066272.1| PDZ and LIM domain protein 1 [Homo sapiens]. 271 8e-73
Alignment gi|NP_055291.2| PDZ and LIM domain protein 3 isoform a [Homo sa... 257 1e-68
Alignment gi|NP_067643.3| PDZ and LIM domain protein 2 isoform 2 [Homo sa... 166 5e-41
Alignment gi|NP_789847.1| PDZ and LIM domain protein 2 isoform 1 [Homo sa... 147 1e-35
Alignment gi|NP_976227.1| PDZ and LIM domain protein 7 isoform 2 [Homo sa... 126 4e-29
Alignment gi|NP_005442.2| PDZ and LIM domain protein 7 isoform 1 [Homo sa... 123 4e-28
Alignment gi|NP_001011513.2| PDZ and LIM domain protein 5 isoform b [Homo... 109 5e-24
>ref|NP_003678.2| PDZ and LIM domain protein 4 isoform 1 [Homo sapiens].
Length = 330
Score = 621 bits (1601), Expect = e-178
Identities = 300/331 (90%), Positives = 307/331 (92%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MPHSVTLRGPSPWGFRLVGGRDFS PLTISRVHAGSKAA AALCPGDLIQAINGESTELM
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQNRIKGCHDHLTLSVSRPE RSWPS P+++KAQAHRIHIDPE QDGSP TSRRPS
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS 120
Query: 447 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 626
GTGPEDGR LGSPYGQ PR P PHNGSS EA + AQMSTLHVSPP S DPARGL RS
Sbjct: 121 GTGTGPEDGRPSLGSPYGQPPRFPVPHNGSS-EATLPAQMSTLHVSPPPSADPARGLPRS 179
Query: 627 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPA 806
RDC VDLGSEVYRML+EPAEP+AAEPKQSGSFRYLQGMLEAGE G+ PGP GPRNLKP A
Sbjct: 180 RDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGDWPGPGGPRNLKPTA 239
Query: 807 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 986
SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER
Sbjct: 240 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 299
Query: 987 LYCESHAKARVKPPEGYDVVAVYPNAKVELV 1079
LYCESHAKARVKPPEGYDVVAVYPNAKVELV
Sbjct: 300 LYCESHAKARVKPPEGYDVVAVYPNAKVELV 330
>ref|NP_001124499.1| PDZ and LIM domain protein 4 isoform 2 [Homo sapiens].
Length = 246
Score = 408 bits (1048), Expect = e-114
Identities = 202/241 (83%), Positives = 209/241 (86%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MPHSVTLRGPSPWGFRLVGGRDFS PLTISRVHAGSKAA AALCPGDLIQAINGESTELM
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQNRIKGCHDHLTLSVSRPE RSWPS P+++KAQAHRIHIDPE QDGSP TSRRPS
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPS 120
Query: 447 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 626
GTGPEDGR LGSPYGQ PR P PHNG SSEA + AQMSTLHVSPP S DPARGL RS
Sbjct: 121 GTGTGPEDGRPSLGSPYGQPPRFPVPHNG-SSEATLPAQMSTLHVSPPPSADPARGLPRS 179
Query: 627 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPA 806
RDC VDLGSEVYRML+EPAEP+AAEPKQSGSFRYLQGMLEAGE G G + P A
Sbjct: 180 RDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGMLEAGEGGAPSSRHGTSSTIPSA 239
Query: 807 S 809
S
Sbjct: 240 S 240
>ref|NP_001107579.1| PDZ and LIM domain protein 3 isoform b [Homo sapiens].
Length = 316
Score = 271 bits (694), Expect = 6e-73
Identities = 152/333 (45%), Positives = 201/333 (60%), Gaps = 7/333 (2%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSP---ATS 434
TH +AQ+RIK L L + R E+ W P E+ KA +I+++ E Q+ P A +
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQEFKPIGTAHN 120
Query: 435 RR--PSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPA 608
RR P A +D R + + Y L ++ S+ + + Q+ L S P
Sbjct: 121 RRAQPFVAAANIDDKRQVVSASYNSPIGL---YSTSNIQDALHGQLRGLIPSSP------ 171
Query: 609 RGLQRSRDCGVDLGSEVYRMLQEPA-EPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGP 785
Q V S+VYRML + EP +P+QSGSFR LQGM++ G PAG
Sbjct: 172 ---QNEPTASVPPESDVYRMLHDNRNEP--TQPRQSGSFRVLQGMVDDGSDDR---PAGT 223
Query: 786 RNLKPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRG 965
R+++ P +K+ G Q +P C +CG GIVG +VKARDK HPECF+C+DC LNLKQ+G
Sbjct: 224 RSVRAPVTKVHGGSGGAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKG 283
Query: 966 YFFLDERLYCESHAKARVKPPEGYDVVAVYPNA 1064
YFF++ LYCE+HA+AR KPPEGYD V +YP A
Sbjct: 284 YFFIEGELYCETHARARTKPPEGYDTVTLYPKA 316
>ref|NP_066272.1| PDZ and LIM domain protein 1 [Homo sapiens].
Length = 329
Score = 271 bits (693), Expect = 8e-73
Identities = 147/326 (45%), Positives = 200/326 (61%), Gaps = 6/326 (1%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA A LC GD+I AI+GE+T MTHLE
Sbjct: 6 IDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLE 65
Query: 279 AQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQD-----GSPATSRR 440
AQNRIKGC D+LTL+V+R E + W P EE K +++++ E Q+ + S
Sbjct: 66 AQNRIKGCTDNLTLTVARSEHKVWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAM 125
Query: 441 PSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQ 620
P A + + Y L + N S+ + ++ + V + P Q
Sbjct: 126 PFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALESKTAASGVEA--NSRPLDHAQ 183
Query: 621 RSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKP 800
+D SEVY+MLQE E + PKQS SF LQ +LE+ E G+ P+G R++K
Sbjct: 184 PPSSLVIDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKA 242
Query: 801 PASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLD 980
P +K+ A + Q LP C +CG GIVG VK RD+ HPEC++C+DCG NLKQ+G+FF++
Sbjct: 243 PVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVE 302
Query: 981 ERLYCESHAKARVKPPEGYDVVAVYP 1058
+++YCE HA+ RV PPEGY+VV V+P
Sbjct: 303 DQIYCEKHARERVTPPEGYEVVTVFP 328
>ref|NP_055291.2| PDZ and LIM domain protein 3 isoform a [Homo sapiens].
Length = 364
Score = 257 bits (657), Expect = 1e-68
Identities = 156/369 (42%), Positives = 202/369 (54%), Gaps = 43/369 (11%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGS------- 422
TH +AQ+RIK L L + R E+ W P E+ KA +I+++ E QDG+
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHN 120
Query: 423 --------PATSRRPSA-AGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLA-QMST 572
P S S +G GRS S S P ++ AP + +M
Sbjct: 121 IRPKPFVIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL 180
Query: 573 LHVSPPHS---------------------IDPARG---LQRSRDCGVDLGSEVYRMLQEP 680
V H+ + A G L V S+VYRML +
Sbjct: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN 240
Query: 681 A-EPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPASKLGAPLSGLQGLPECT 857
EP +P+QSGSFR LQGM++ G PAG R+++ P +K+ G Q +P C
Sbjct: 241 RNEP--TQPRQSGSFRVLQGMVDDGSDDR---PAGTRSVRAPVTKVHGGSGGAQRMPLCD 295
Query: 858 RCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEGY 1037
+CG GIVG +VKARDK HPECF+C+DC LNLKQ+GYFF++ LYCE+HA+AR KPPEGY
Sbjct: 296 KCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGY 355
Query: 1038 DVVAVYPNA 1064
D V +YP A
Sbjct: 356 DTVTLYPKA 364
>ref|NP_067643.3| PDZ and LIM domain protein 2 isoform 2 [Homo sapiens].
Length = 602
Score = 166 bits (419), Expect = 5e-41
Identities = 124/348 (35%), Positives = 169/348 (48%), Gaps = 34/348 (9%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +V + GP+PWGFR+ GGRDF P+ +++V KA A L PGD+I AINGES E M
Sbjct: 251 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 310
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTP-------------------EENKAQAHR 389
H EAQ++I+ L L + R ++ S T E+++
Sbjct: 311 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS 370
Query: 390 IHIDPEA---QDGSPATSRRPSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLA 560
+ P + + GSP + S++ TG E S SP LPA S S P
Sbjct: 371 SYSSPTSLSPRAGSPFSPPPSSSSLTG-EAAISRSFQSLACSPGLPAADRLSYSGRPGSR 429
Query: 561 QM-------STLHVSPPHSIDPARGLQRSRDCG---VDLGSEVYRMLQEPAEPMAAEPKQ 710
Q S + V PP + + G +D SEV++MLQE E AA P+Q
Sbjct: 430 QAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAA-PRQ 488
Query: 711 SGSFRYLQGMLEAGESGERPGPAGPRNLKPPAS-KLGAPLSGLQGLPECTRCGHGIVGTI 887
S SFR LQ LEA E G P P +L P +S L+ L C +C I
Sbjct: 489 SSSFRLLQEALEAEERGGTPAFL-PSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQA 547
Query: 888 VKARDKLY-HPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPP 1028
V+ ++ Y HP C+ C+DCGLNLK RG+F++ + LYCE HA+ R P
Sbjct: 548 VRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGDELYCEKHARQRYSAP 595
>ref|NP_789847.1| PDZ and LIM domain protein 2 isoform 1 [Homo sapiens].
Length = 366
Score = 147 bits (372), Expect = 1e-35
Identities = 117/332 (35%), Positives = 159/332 (47%), Gaps = 34/332 (10%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +V + GP+PWGFR+ GGRDF P+ +++V KA A L PGD+I AINGES E M
Sbjct: 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTP-------------------EENKAQAHR 389
H EAQ++I+ L L + R ++ S T E+++
Sbjct: 61 LHAEAQSKIRQSPSPLRLQLDRSQATSPGQTNGDSSLEVLATRFQGSVRTYTESQSSLRS 120
Query: 390 IHIDPEA---QDGSPATSRRPSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLA 560
+ P + + GSP + S++ TG E S SP LPA S S P
Sbjct: 121 SYSSPTSLSPRAGSPFSPPPSSSSLTG-EAAISRSFQSLACSPGLPAADRLSYSGRPGSR 179
Query: 561 QM-------STLHVSPPHSIDPARGLQRSRDCG---VDLGSEVYRMLQEPAEPMAAEPKQ 710
Q S + V PP + + G +D SEV++MLQE E AA P+Q
Sbjct: 180 QAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSLLLDEDSEVFKMLQENREGRAA-PRQ 238
Query: 711 SGSFRYLQGMLEAGESGERPGPAGPRNLKPPAS-KLGAPLSGLQGLPECTRCGHGIVGTI 887
S SFR LQ LEA E G P P +L P +S L+ L C +C I
Sbjct: 239 SSSFRLLQEALEAEERGGTPAFL-PSSLSPQSSLPASRALATPPKLHTCEKCSTSIANQA 297
Query: 888 VKARDKLY-HPECFMCSDCGLNLKQRGYFFLD 980
V+ ++ Y HP C+ C+DCGLNLK RG+F+ D
Sbjct: 298 VRIQEGRYRHPGCYTCADCGLNLKMRGHFWED 329
>ref|NP_976227.1| PDZ and LIM domain protein 7 isoform 2 [Homo sapiens].
Length = 423
Score = 126 bits (316), Expect = 4e-29
Identities = 103/329 (31%), Positives = 151/329 (45%), Gaps = 20/329 (6%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
V L GP+PWGFRL GG+DF+VPL+ISR+ G KAAQA + GD + +I+GE+ +TH+E
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 279 AQNRIKGCHDHLTLSVSRPES-RSWP---STPEEN-------KAQAHRIHIDPEAQDGSP 425
AQN+I+ C + L+L +SR + +S P TP++ A R+ + E P
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKVQTPDKQPLRPLVPDASKQRLMENTEDWRPRP 125
Query: 426 ATSRRPSAAGTGPEDGRSGLGSP-------YGQSPRLPAPHNGSSS-EAPMLAQMSTLHV 581
T + S G + P Q PR AP SS+ + P +
Sbjct: 126 GTGQSRSFRILAHLTGTEFMQDPDEEHLKKSSQVPRTEAPAPASSTPQEPWPGPTAPSPT 185
Query: 582 S-PPHSIDPARGLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGES 758
S PP ++DPA + + D + +L ++P P QS + +++A
Sbjct: 186 SRPPWAVDPAFAERYAPD-------KTSTVLTRHSQPATPTPLQSRT-----SIVQAAAG 233
Query: 759 GERPGPAGPRNLKPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSD 938
G PG G N K P C +C I G + A YHPE F+CS
Sbjct: 234 GV-PG-GGSNNGKTPV---------------CHQCHKVIRGRYLVALGHAYHPEEFVCSQ 276
Query: 939 CGLNLKQRGYFFLDERLYCESHAKARVKP 1025
CG L++ G+F ++C R P
Sbjct: 277 CGKVLEEGGFFEEKGAIFCPPCYDVRYAP 305
>ref|NP_005442.2| PDZ and LIM domain protein 7 isoform 1 [Homo sapiens].
Length = 457
Score = 123 bits (308), Expect = 4e-28
Identities = 104/343 (30%), Positives = 149/343 (43%), Gaps = 34/343 (9%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
V L GP+PWGFRL GG+DF+VPL+ISR+ G KAAQA + GD + +I+GE+ +TH+E
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIE 65
Query: 279 AQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRR------ 440
AQN+I+ C + L+L +SR ++ S P++ A A DP +P+ S
Sbjct: 66 AQNKIRACGERLSLGLSR--AQPVQSKPQKASAPA----ADPPRYTFAPSVSLNKTARPF 119
Query: 441 --PSAAGTGPEDGRSGLGS--PYGQSPRL--------PAPHNGSSSEAPMLAQMS-TLHV 581
P A + P+ L P RL P P G S +LA ++ T +
Sbjct: 120 GAPPPADSAPQQNGQPLRPLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFM 179
Query: 582 SPPHSIDPARGLQRSRDCGVDLGSEVYRMLQEP-AEPMAAEPKQSGSFRYLQGMLEAGES 758
P + Q R + + QEP P A P + E
Sbjct: 180 QDPDEEHLKKSSQVPR---TEAPAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAERYAP 236
Query: 759 GE-------RPGPAGPRNLKPPASKLGAPLSGLQG-------LPECTRCGHGIVGTIVKA 896
+ PA P L+ S + A G+ G P C +C I G + A
Sbjct: 237 DKTSTVLTRHSQPATPTPLQSRTSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVA 296
Query: 897 RDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKP 1025
YHPE F+CS CG L++ G+F ++C R P
Sbjct: 297 LGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAP 339
>ref|NP_001011513.2| PDZ and LIM domain protein 5 isoform b [Homo sapiens].
Length = 487
Score = 109 bits (272), Expect = 5e-24
Identities = 99/360 (27%), Positives = 141/360 (39%), Gaps = 58/360 (16%)
Frame = +3
Query: 93 HSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTH 272
+SV+L GP+PWGFRL GG+DF++PLTIS + G KAAQA + GD++ +I+G + + MTH
Sbjct: 4 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTH 63
Query: 273 LEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRI--HIDPEAQDGSPATSRRPS 446
LEAQN+IKGC L +++ R + P K + E +G S+ S
Sbjct: 64 LEAQNKIKGCTGSLNMTLQRASAAPKPEPVPVQKPTVTSVCSETSQELAEGQRRGSQGDS 123
Query: 447 AAGTGP------------------------------EDGRSGLGSPYGQSPRLPA----- 521
GP ED R G+ +S R+ A
Sbjct: 124 KQQNGPPRKHIVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGT 183
Query: 522 ------------PHNGSSSEAPMLAQMSTLHVSPPHSID-PARGLQRSRDCGV------- 641
N S +P LA S P S+D P G
Sbjct: 184 EHLKESEADNTKKANNSQEPSPQLASSVASTRSMPESLDSPTSGRPGVTSLTAAAAFKPV 243
Query: 642 -DLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPASKLG 818
G Q P + + + + S S Y + A + + P+ L A +
Sbjct: 244 GSTGVIKSPSWQRPNQGVPSTGRISNSATYSGSVAPANSALGQTQPSDQDTLVQRAEHIP 303
Query: 819 APLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCE 998
A + P C C I G + A K +HPE F C+ C + G+ LYCE
Sbjct: 304 AG----KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCE 359
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,648,419
Number of extensions: 1290938
Number of successful extensions: 8823
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 8641
Number of HSP's successfully gapped: 37
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003163
(1134 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062290.2| PDZ and LIM domain protein 4 [Mus musculus]. 594 e-170
Alignment gi|NP_058557.2| PDZ and LIM domain protein 1 [Mus musculus]. 266 2e-71
Alignment gi|NP_058078.1| PDZ and LIM domain protein 3 [Mus musculus]. 265 4e-71
Alignment gi|NP_666090.1| PDZ and LIM domain protein 2 [Mus musculus]. 161 1e-39
Alignment gi|NP_001107560.1| PDZ and LIM domain protein 7 isoform a [Mus ... 115 6e-26
Alignment gi|NP_001034161.1| LIM domain-binding protein 3 isoform c [Mus ... 105 7e-23
Alignment gi|NP_001034165.1| LIM domain-binding protein 3 isoform g [Mus ... 104 1e-22
Alignment gi|NP_001034162.1| LIM domain-binding protein 3 isoform d [Mus ... 104 1e-22
Alignment gi|NP_001034160.1| LIM domain-binding protein 3 isoform b [Mus ... 104 1e-22
Alignment gi|NP_036048.3| LIM domain-binding protein 3 isoform a [Mus mus... 104 1e-22
>ref|NP_062290.2| PDZ and LIM domain protein 4 [Mus musculus].
Length = 330
Score = 594 bits (1532), Expect = e-170
Identities = 289/331 (87%), Positives = 303/331 (91%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M HSVTLRGPSPWGFRLVGGRDFS PLTISRVHAGSKAA AALCPGDLIQAINGESTELM
Sbjct: 1 MTHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQNRIKGCHDHLTLSVSRPE+++WPS P++ KAQAHRIHIDPE+QD SPATSRR S
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPENKNWPSAPDD-KAQAHRIHIDPESQDCSPATSRRSS 119
Query: 447 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 626
+G ED RSGLGSPYGQ PRLP PHNGSS+EA + AQMS LHVSPP S D AR L R+
Sbjct: 120 VSGISLEDNRSGLGSPYGQPPRLPVPHNGSSNEATLPAQMSALHVSPPTSADTARVLPRN 179
Query: 627 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPA 806
RDC VDLGSEVYRML+EPAEP A+EPKQSGSFRYLQGMLEAGE G+RPG GPRNLKP A
Sbjct: 180 RDCRVDLGSEVYRMLREPAEPTASEPKQSGSFRYLQGMLEAGEGGDRPGSGGPRNLKPAA 239
Query: 807 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 986
SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER
Sbjct: 240 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 299
Query: 987 LYCESHAKARVKPPEGYDVVAVYPNAKVELV 1079
LYCE+HAKARVKPPEGYDVVAVYPNAKVELV
Sbjct: 300 LYCENHAKARVKPPEGYDVVAVYPNAKVELV 330
>ref|NP_058557.2| PDZ and LIM domain protein 1 [Mus musculus].
Length = 327
Score = 266 bits (681), Expect = 2e-71
Identities = 148/327 (45%), Positives = 197/327 (60%), Gaps = 8/327 (2%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
+ L+GP PWGFRLVGG+DF PL ISRV GSKAA A LC GDLI AI+GE T MTHLE
Sbjct: 6 IVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDLITAIDGEDTSSMTHLE 65
Query: 279 AQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQD-----GSPATSRR 440
AQN+IKGC D++TL+VSR E + W P EE K +++++ E Q+ + S
Sbjct: 66 AQNKIKGCADNMTLTVSRSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAM 125
Query: 441 PSAAGTGPEDG--RSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARG 614
P A P + SP G + ++ E+ A + P P+
Sbjct: 126 PFTASPAPSTRVITNQYNSPTGLYSSENISNFNNAVESKTSASGEEANSRPVVQPHPSGS 185
Query: 615 LQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNL 794
L +D SEVY+MLQE E + PKQS SF LQ +LE+ G+ P+G R++
Sbjct: 186 LI------IDKDSEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESDGKGDPNKPSGFRSV 238
Query: 795 KPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFF 974
K P +K+ A + Q LP C +CG GIVG VK RD HPEC++C+DCG+NLKQ+G+FF
Sbjct: 239 KAPVTKVAASVGNAQKLPICDKCGTGIVGVFVKLRDHHRHPECYVCTDCGINLKQKGHFF 298
Query: 975 LDERLYCESHAKARVKPPEGYDVVAVY 1055
+++++YCE HA+ RV PPEGYDVV V+
Sbjct: 299 VEDQIYCEKHARERVTPPEGYDVVTVF 325
>ref|NP_058078.1| PDZ and LIM domain protein 3 [Mus musculus].
Length = 316
Score = 265 bits (678), Expect = 4e-71
Identities = 148/334 (44%), Positives = 197/334 (58%), Gaps = 8/334 (2%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSP---ATS 434
TH +AQ+RIK L L + R E+R W P E+ KA +I+++ E Q+ P A +
Sbjct: 61 THADAQDRIKAASYQLCLKIDRAETRLWSPQVSEDGKAHPFKINLEAEPQEFKPIGTAHN 120
Query: 435 RR--PSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQM--STLHVSPPHSID 602
RR P A +D R + + Y L + N + L + +L P S+
Sbjct: 121 RRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPGSLQNEPTASVP 180
Query: 603 PARGLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAG 782
P S+VYRML + + AA P+QSGSFR LQ ++ G PAG
Sbjct: 181 PQ--------------SDVYRMLHDNRDDPAA-PRQSGSFRVLQDLVNDGPDDR---PAG 222
Query: 783 PRNLKPPASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQR 962
R+++ P +K+ Q +P C +CG GIVG +VKARDK HPECF+C+DC LNLKQ+
Sbjct: 223 TRSVRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK 282
Query: 963 GYFFLDERLYCESHAKARVKPPEGYDVVAVYPNA 1064
GYFF++ LYCE+HA+AR +PPEGYD V +YP A
Sbjct: 283 GYFFVEGELYCETHARARTRPPEGYDTVTLYPKA 316
>ref|NP_666090.1| PDZ and LIM domain protein 2 [Mus musculus].
Length = 349
Score = 161 bits (407), Expect = 1e-39
Identities = 122/346 (35%), Positives = 165/346 (47%), Gaps = 32/346 (9%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +V + GP+PWGFR+ GGRDF P+ +++V KA A L PGD+I AING+S E M
Sbjct: 1 MALTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQ--------AHRIHIDPEAQDGS 422
H EAQ++I+ L L + R ++ S T E + + R H D ++ S
Sbjct: 61 LHAEAQSKIRQSASPLRLQLDRSQTASPGQTNGEGSLEVLATRFQGSLRTHRDSQSSQRS 120
Query: 423 P-----ATSRRPSAAGTGP----------EDGRSGLGSPYGQSPRLPAPHNGSSSEAPML 557
+ S RP + + P ED SP L A H+ + P
Sbjct: 121 ACFSPVSLSPRPCSPFSTPPPTSPVALSKEDMIGCSFQSLTHSPGLAAAHHLTYPGHPTS 180
Query: 558 AQMSTLHVSPPHSI------DPAR-GLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSG 716
Q H SP S P R R ++ SEV++MLQE + AA P+QS
Sbjct: 181 QQAG--HSSPSDSAVRVLLHSPGRPSSPRFSSLDLEEDSEVFKMLQENRQGRAA-PRQSS 237
Query: 717 SFRYLQGMLEAGESGERPGPAGPRNLKPPAS-KLGAPLSGLQGLPECTRCGHGIVGTIVK 893
SFR LQ LEA E G P P +L AS L+ L C +C I V+
Sbjct: 238 SFRLLQEALEAEERGGTPAFV-PSSLSSQASLPTSRALATPPKLHTCEKCSVNISNQAVR 296
Query: 894 ARDKLY-HPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPP 1028
++ Y HP C+ C+DCGLNLK RG+F++ LYCE HA+ R P
Sbjct: 297 IQEGRYRHPGCYTCADCGLNLKMRGHFWVGNELYCEKHARQRYSMP 342
>ref|NP_001107560.1| PDZ and LIM domain protein 7 isoform a [Mus musculus].
Length = 457
Score = 115 bits (288), Expect = 6e-26
Identities = 107/363 (29%), Positives = 150/363 (41%), Gaps = 54/363 (14%)
Frame = +3
Query: 99 VTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTHLE 278
V L GP+PWGFRL GG+DF+VPL+ISR+ G KAAQA + GD + I+GE+ +TH+E
Sbjct: 6 VVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIE 65
Query: 279 AQNRIKGCHDHLTLSVSRPES-RSWPSTPEENKAQAHRIHIDPEA--------------- 410
AQN+I+ C + L+L +SR + +S P A R P A
Sbjct: 66 AQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPT 125
Query: 411 -----QDGSPATSRRPSAAG----TGPEDGRSGLGSPYGQSPRLPAPHNGS--------- 536
Q+G P A+ ED R G+ +S R+ A G+
Sbjct: 126 DSTLRQNGQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEE 185
Query: 537 ----SSEAPML---AQMSTLHVS-------------PPHSIDPARGLQRSRDCGVDLGSE 656
SS+ P A ST+ PP ++DPA + D S
Sbjct: 186 FMKKSSQVPRTEAPAPASTIPQESWPGPTTPSPTSRPPWAVDPA----FAERYAPDKTST 241
Query: 657 VYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPASKLGAPLSGL 836
V +PA P + + S +++A G G G N K P
Sbjct: 242 VLTRHSQPATPTPLQNRTS--------IVQAAAGGGTGG--GSNNGKTPV---------- 281
Query: 837 QGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKAR 1016
C +C I G + A YHPE F+CS CG L++ G+F ++C S R
Sbjct: 282 -----CHQCHKIIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVR 336
Query: 1017 VKP 1025
P
Sbjct: 337 YAP 339
>ref|NP_001034161.1| LIM domain-binding protein 3 isoform c [Mus musculus].
Length = 679
Score = 105 bits (262), Expect = 7e-23
Identities = 82/237 (34%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSR-----PESRSWPSTPEENKAQAHRIHI-----DPEAQD 416
THLEAQN+IK +L+L++ + P S + P H+ + + + Q+
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQE 120
Query: 417 GSPATSRRPSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHS 596
+ + SA T GLG G++ + A +N S A M +
Sbjct: 121 RFNPSVLKDSALSTHKPIEVKGLG---GKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQ 177
Query: 597 IDPARGLQRSRDCGVDLGSEVYRML-------QEPAEPMAAEPK--QSGSFRYLQGM 740
G +D VD S VY+ + ++ A+ A QS SFR L M
Sbjct: 178 GSDFSGSLPVKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQM 234
>ref|NP_001034165.1| LIM domain-binding protein 3 isoform g [Mus musculus].
Length = 327
Score = 104 bits (260), Expect = 1e-22
Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSV---SRPESRSWPSTPEENKAQAHRIHIDPEAQ-DGSPATS 434
THLEAQN+IK +L+L++ RP S + P ++ DP +GS AT
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKDPALDTNGSLATP 120
Query: 435 RRPSAAGTGP 464
A P
Sbjct: 121 SPSPEARASP 130
>ref|NP_001034162.1| LIM domain-binding protein 3 isoform d [Mus musculus].
Length = 622
Score = 104 bits (260), Expect = 1e-22
Identities = 90/266 (33%), Positives = 130/266 (48%), Gaps = 25/266 (9%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSR-----PESRSWPSTPEENKAQAHRIHI-----DPEAQD 416
THLEAQN+IK +L+L++ + P S + P H+ + + + Q+
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQE 120
Query: 417 GSPATSRRPSAAGTGPEDGRSGLGSPYGQSPRLPAPHNGS----SSEAPM--LAQMSTLH 578
+ + SA T GLG G++ + A +N S +A M +A +
Sbjct: 121 RFNPSVLKDSALSTHKPIEVKGLG---GKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQ 177
Query: 579 VSPPHSIDPARGLQRSRDCGVDLGSEVYRML-------QEPAEPMAAEPK--QSGSFRYL 731
S P L +D VD S VY+ + ++ A+ A QS SFR L
Sbjct: 178 GSDFSGASPLASLP-VKDLAVDSASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRIL 236
Query: 732 QGMLEAGESGERPGPAGPRNLKPPAS 809
+ E + P R +P AS
Sbjct: 237 -AQMTGTEYMQDPDEEALRRSRPQAS 261
>ref|NP_001034160.1| LIM domain-binding protein 3 isoform b [Mus musculus].
Length = 661
Score = 104 bits (260), Expect = 1e-22
Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSV---SRPESRSWPSTPEENKAQAHRIHIDPEAQ-DGSPATS 434
THLEAQN+IK +L+L++ RP S + P ++ DP +GS AT
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKDPALDTNGSLATP 120
Query: 435 RRPSAAGTGP 464
A P
Sbjct: 121 SPSPEARASP 130
>ref|NP_036048.3| LIM domain-binding protein 3 isoform a [Mus musculus].
Length = 723
Score = 104 bits (260), Expect = 1e-22
Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSV---SRPESRSWPSTPEENKAQAHRIHIDPEAQ-DGSPATS 434
THLEAQN+IK +L+L++ RP S + P ++ DP +GS AT
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKDPALDTNGSLATP 120
Query: 435 RRPSAAGTGP 464
A P
Sbjct: 121 SPSPEARASP 130
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,626,045
Number of extensions: 1060599
Number of successful extensions: 6866
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 6736
Number of HSP's successfully gapped: 36
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003163
(1134 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123959.1| PREDICTED: PDZ and LIM domain protein 4-like... 686 0.0
Alignment gi|XP_003354321.1| PREDICTED: PDZ and LIM domain protein 4-like... 462 e-130
Alignment gi|NP_001001637.1| PDZ and LIM domain protein 3 [Sus scrofa]. 254 8e-68
Alignment gi|XP_003359354.1| PREDICTED: PDZ and LIM domain protein 1-like... 161 7e-40
Alignment gi|XP_003359314.1| PREDICTED: hypothetical protein LOC100151883... 107 2e-23
Alignment gi|XP_003361169.1| PREDICTED: PDZ and LIM domain protein 1 [Sus... 106 2e-23
Alignment gi|XP_003357126.1| PREDICTED: PDZ and LIM domain protein 5-like... 104 8e-23
Alignment gi|XP_003357125.1| PREDICTED: PDZ and LIM domain protein 5-like... 101 7e-22
Alignment gi|XP_003357123.1| PREDICTED: PDZ and LIM domain protein 5-like... 91 9e-19
Alignment gi|XP_003357124.1| PREDICTED: PDZ and LIM domain protein 5-like... 91 1e-18
>ref|XP_003123959.1| PREDICTED: PDZ and LIM domain protein 4-like isoform 1 [Sus scrofa].
Length = 331
Score = 686 bits (1771), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 120
Query: 447 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 626
AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS
Sbjct: 121 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 180
Query: 627 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPA 806
RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPA
Sbjct: 181 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPA 240
Query: 807 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 986
SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER
Sbjct: 241 SKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDER 300
Query: 987 LYCESHAKARVKPPEGYDVVAVYPNAKVELV 1079
LYCESHAKARVKPPEGYDVVAVYPNAKVELV
Sbjct: 301 LYCESHAKARVKPPEGYDVVAVYPNAKVELV 331
>ref|XP_003354321.1| PREDICTED: PDZ and LIM domain protein 4-like isoform 2 [Sus
scrofa].
Length = 247
Score = 462 bits (1189), Expect = e-130
Identities = 228/234 (97%), Positives = 228/234 (97%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM
Sbjct: 1 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS
Sbjct: 61 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 120
Query: 447 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 626
AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS
Sbjct: 121 AAGTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPPHSIDPARGLQRS 180
Query: 627 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPR 788
RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESG GP R
Sbjct: 181 RDCGVDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESG---GPLSRR 231
>ref|NP_001001637.1| PDZ and LIM domain protein 3 [Sus scrofa].
Length = 365
Score = 254 bits (648), Expect = 8e-68
Identities = 152/370 (41%), Positives = 202/370 (54%), Gaps = 44/370 (11%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
MP +V L GP+PWGFRL GG DF+ PL I+R+ GSKAA A LCPGD+I AI+G TE M
Sbjct: 1 MPQNVILPGPAPWGFRLSGGIDFNQPLIITRITPGSKAAAANLCPGDVILAIDGYGTESM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSW-PSTPEENKAQAHRIHIDPEAQDGSPATSR-- 437
TH +AQ+RIK L L + R E+R W P E+ KA +I+++ E QD + +
Sbjct: 61 THADAQDRIKAAAHQLCLKIDRAETRLWSPQVTEDGKAHPFKINLESEPQDVNYFEHKHN 120
Query: 438 -RP--------SAAGTGPE--DGRSGLGSPYGQS-----------------PRLPAPHN- 530
RP S+ + P DG SG +P S P +P
Sbjct: 121 IRPKPFIIPGRSSGCSTPSGIDGGSGRSTPSSVSTLSTICPGDLKVAAKMAPNIPLEMEL 180
Query: 531 ------GSSSEAPMLAQ-----MSTLHVSPPHSIDPARGLQRSRDCGVDLGSEVYRMLQE 677
+ PM M TL ++ + V S+VYRML +
Sbjct: 181 PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPSMSEPTTASVPPQSDVYRMLHD 240
Query: 678 PA-EPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPASKLGAPLSGLQGLPEC 854
EP +P+QSGSFR LQ ++ G PAG R+++ P +K+ G Q +P C
Sbjct: 241 NRNEP--TQPRQSGSFRVLQELVNDGPDDR---PAGTRSVRAPVTKIHGGAGGTQKMPLC 295
Query: 855 TRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEG 1034
+CG GIVG +VKARDK HPECF+C+DC LNLKQ+GYFF++ LYCE+HA+AR++PPEG
Sbjct: 296 DKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARMRPPEG 355
Query: 1035 YDVVAVYPNA 1064
YD V +YP A
Sbjct: 356 YDTVTLYPKA 365
>ref|XP_003359354.1| PREDICTED: PDZ and LIM domain protein 1-like [Sus scrofa].
Length = 316
Score = 161 bits (407), Expect = 7e-40
Identities = 75/140 (53%), Positives = 101/140 (72%)
Frame = +3
Query: 639 VDLGSEVYRMLQEPAEPMAAEPKQSGSFRYLQGMLEAGESGERPGPAGPRNLKPPASKLG 818
+D SEVY+MLQE E + PKQS SF LQ +LE+ E G+ P+G R++K P +K+
Sbjct: 177 IDKESEVYKMLQEKQE-LNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVA 235
Query: 819 APLSGLQGLPECTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLDERLYCE 998
A + Q LP C +CG GIVG VK RD+ HPEC++C+DCG NLKQ+G+FF+++++YCE
Sbjct: 236 ASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCE 295
Query: 999 SHAKARVKPPEGYDVVAVYP 1058
HA+ RV PPEGYDVV V+P
Sbjct: 296 KHARERVIPPEGYDVVTVFP 315
>ref|XP_003359314.1| PREDICTED: hypothetical protein LOC100151883 [Sus scrofa].
Length = 715
Score = 107 bits (266), Expect = 2e-23
Identities = 62/137 (45%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Frame = +3
Query: 87 MPHSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELM 266
M +SVTL GP PWGFRL GG+DF++PLTISR+ GSKAAQ+ L GDL+ AI+G +T+ M
Sbjct: 1 MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 267 THLEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPS 446
THLEAQN+IK +L+L++ + R P + Q+ + + P +D PA S
Sbjct: 61 THLEAQNKIKSASYNLSLTLQK-SKRPIPISTAVPPIQS-PLPVIPHQKD--PALDANSS 116
Query: 447 AAGTGPE-DGRSGLGSP 494
A P + R+ G+P
Sbjct: 117 LAAPSPHPEARASPGTP 133
>ref|XP_003361169.1| PREDICTED: PDZ and LIM domain protein 1 [Sus scrofa].
Length = 333
Score = 106 bits (265), Expect = 2e-23
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 7/205 (3%)
Frame = +3
Query: 177 RVHAGSKAAQAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPESRSW-P 353
+V GSKAA A LC GD+I AI+GE+T MTHLEAQN+IKGC D++TL+V+R E + W P
Sbjct: 69 QVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSP 128
Query: 354 STPEENKAQAHRIHIDPEAQD-----GSPATSRRPSAAGTGPEDGRSGLGSPYGQSPRLP 518
EE K +++++ E Q+ + S P A + + Y L
Sbjct: 129 LVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSASPRIITNQYNNPAGLY 188
Query: 519 APHNGSSSEAPMLAQMSTL-HVSPPHSIDPARGLQRSRDCGVDLGSEVYRMLQEPAEPMA 695
+ N SS + + ++ + + ++D + Q +D SEVY+MLQE E +
Sbjct: 189 SSENISSFNSALESKTAASGQETNGRALDHS---QLPSGLVIDKESEVYKMLQEKQE-LN 244
Query: 696 AEPKQSGSFRYLQGMLEAGESGERP 770
PKQS SF LQ +LE+ E G++P
Sbjct: 245 EPPKQSTSFLVLQEILESEEKGKQP 269
>ref|XP_003357126.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 4 [Sus scrofa].
Length = 486
Score = 104 bits (260), Expect = 8e-23
Identities = 97/366 (26%), Positives = 141/366 (38%), Gaps = 64/366 (17%)
Frame = +3
Query: 93 HSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTH 272
+SV+L GP+PWGFRL GG+DF++PLTIS + G KA+QA + GD++ +I+G S + MTH
Sbjct: 4 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQGMTH 63
Query: 273 LEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHID--PEAQDGSPATSRRPS 446
LEAQN+IKG L +++ R + P K + + E +G S+ S
Sbjct: 64 LEAQNKIKGSTGSLNMTLQRASATPKPEPVPVQKPTVTSVCAETAQELAEGQRRGSQGDS 123
Query: 447 AAGTGP------------------------------EDGRSGLGSPYGQSPRLPAPHNGS 536
GP ED R G+ +S R+ A G+
Sbjct: 124 KQLNGPPRKHIVERNTEFYHIPTHSDASKKRLMEDTEDWRPRTGTTQSRSFRILAQITGT 183
Query: 537 SSEAPMLAQMSTLHVSPPHSIDPARGLQRSRDCGVDLGSEVYRMLQEPAEPMAAEPKQSG 716
L S + A Q + + P P A P +G
Sbjct: 184 EH----------LKESETDNTKKANNTQEASQPSAPSAVGAQSTAERPGSPAFARPGVAG 233
Query: 717 ---SFRYLQGMLEAG---ESGERPGPAGPRNLKPPAS----KLGAPLSGLQGLPE----- 851
+ + G +G S +RP A P + S AP + +G P+
Sbjct: 234 LTTAAAFKPGGSPSGIKSPSWQRPNQAAPSTGRVTNSGTPTGASAPATSARGQPQPSNED 293
Query: 852 -----------------CTRCGHGIVGTIVKARDKLYHPECFMCSDCGLNLKQRGYFFLD 980
C C I G + A K +HPE F C+ C + G+
Sbjct: 294 TLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEQ 353
Query: 981 ERLYCE 998
LYCE
Sbjct: 354 GALYCE 359
>ref|XP_003357125.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 3 [Sus
scrofa].
Length = 595
Score = 101 bits (252), Expect = 7e-22
Identities = 64/166 (38%), Positives = 94/166 (56%)
Frame = +3
Query: 93 HSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTH 272
+SV+L GP+PWGFRL GG+DF++PLTIS + G KA+QA + GD++ +I+G S + MTH
Sbjct: 4 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQGMTH 63
Query: 273 LEAQNRIKGCHDHLTLSVSRPESRSWPSTPEENKAQAHRIHIDPEAQDGSPATSRRPSAA 452
LEAQN+IKG L +++ R + P K + + + P SPA S+ S
Sbjct: 64 LEAQNKIKGSTGSLNMTLQRASATPKPEPVPVQKGEPKEV-VKP-VPIPSPAVSKVTSTT 121
Query: 453 GTGPEDGRSGLGSPYGQSPRLPAPHNGSSSEAPMLAQMSTLHVSPP 590
T GS +P++ + + SS+ P A S+ H SPP
Sbjct: 122 NTAYNKAPRPFGSV--SAPKVTSIPSPSSAFTPAHATTSS-HASPP 164
>ref|XP_003357123.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 1 [Sus
scrofa].
Length = 214
Score = 91.3 bits (225), Expect = 9e-19
Identities = 46/97 (47%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Frame = +3
Query: 93 HSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTH 272
+SV+L GP+PWGFRL GG+DF++PLTIS + G KA+QA + GD++ +I+G S + MTH
Sbjct: 4 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQGMTH 63
Query: 273 LEAQNRIKGCHDHLTLSVSRPESRSWPS-TPEENKAQ 380
LEAQN+IKG L +++ R + P P + K +
Sbjct: 64 LEAQNKIKGSTGSLNMTLQRASATPKPEPVPVQKKTK 100
>ref|XP_003357124.1| PREDICTED: PDZ and LIM domain protein 5-like isoform 2 [Sus
scrofa].
Length = 234
Score = 90.9 bits (224), Expect = 1e-18
Identities = 44/87 (50%), Positives = 63/87 (72%)
Frame = +3
Query: 93 HSVTLRGPSPWGFRLVGGRDFSVPLTISRVHAGSKAAQAALCPGDLIQAINGESTELMTH 272
+SV+L GP+PWGFRL GG+DF++PLTIS + G KA+QA + GD++ +I+G S + MTH
Sbjct: 4 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAQGMTH 63
Query: 273 LEAQNRIKGCHDHLTLSVSRPESRSWP 353
LEAQN+IKG L +++ R + P
Sbjct: 64 LEAQNKIKGSTGSLNMTLQRASATPKP 90
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,087,802
Number of extensions: 886554
Number of successful extensions: 5961
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 5793
Number of HSP's successfully gapped: 21
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003163
(1134 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 494 e-137
>Sscrofa_Chr02
|| Length = 162569375
Score = 494 bits (249), Expect = e-137
Identities = 255/257 (99%)
Strand = Plus / Plus
Query: 878 ggggaccattgtcaaggcgcgagacaagctctaccaccccgagtgcttcatgtgcagcga 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139973619 ggggaccattgtcaaggcgcgagacaagctctaccaccccgagtgcttcatgtgcagcga 139973678
Query: 938 ctgcggcctgaacctcaagcagcgcggttacttctttctggacgagcggctctactgcga 997
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 139973679 ctgcggcctgaacctcaagcaacgcggttacttctttctggacgagcggctctactgcga 139973738
Query: 998 gagccacgccaaggcgcgcgtgaagccacccgagggctacgacgtggtggcagtgtaccc 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139973739 gagccacgccaaggcgcgcgtgaagccacccgagggctacgacgtggtggcagtgtaccc 139973798
Query: 1058 caatgccaaagtggaactcgtctgagccgctgtcgaaaccgccagtccccaactctgctt 1117
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 139973799 caatgccaaagtggaactcgtctgagccgctgtcgaaaccgccactccccaactctgctt 139973858
Query: 1118 cttttaatgtccccacg 1134
|||||||||||||||||
Sbjct: 139973859 cttttaatgtccccacg 139973875
Score = 365 bits (184), Expect = 4e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 412 aggatggcagtccagcgaccagcaggaggccttcagctgctgggactgggccagaagatg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139972497 aggatggcagtccagcgaccagcaggaggccttcagctgctgggactgggccagaagatg 139972556
Query: 472 gcaggtcaggcctgggatctccttacggacagtcgcctcgcctcccagccccacacaatg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139972557 gcaggtcaggcctgggatctccttacggacagtcgcctcgcctcccagccccacacaatg 139972616
Query: 532 gcagcagcagtgaggctcctatgctggcccagatgagcaccctgcatgtgtctccacccc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139972617 gcagcagcagtgaggctcctatgctggcccagatgagcaccctgcatgtgtctccacccc 139972676
Query: 592 acag 595
||||
Sbjct: 139972677 acag 139972680
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 597 attgacccagccagaggccttcagcggagccgcgactgtggagtcgacctgggctcagag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139972896 attgacccagccagaggccttcagcggagccgcgactgtggagtcgacctgggctcagag 139972955
Query: 657 gtgtacaggatgctccaggagccggctgagcccatggctgcggagcccaagcagtcaggc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139972956 gtgtacaggatgctccaggagccggctgagcccatggctgcggagcccaagcagtcaggc 139973015
Query: 717 tccttccgctacttgcagggcatgttagaggcaggcgagagcgg 760
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139973016 tccttccgctacttgcagggcatgttagaggcaggcgagagcgg 139973059
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 179 ggtccatgctggcagcaaggctgcccaggctgccctgtgccctggagacctgatccaggc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139964172 ggtccatgctggcagcaaggctgcccaggctgccctgtgccctggagacctgatccaggc 139964231
Query: 239 catcaatggtgagagcacagagctcatgacacacctggaggcgcagaaccgcatcaaggg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139964232 catcaatggtgagagcacagagctcatgacacacctggaggcgcagaaccgcatcaaggg 139964291
Query: 299 ctgccatgaccacctcaccctctccgtgagcagg 332
||||||||||||||||||||||||||||||||||
Sbjct: 139964292 ctgccatgaccacctcaccctctccgtgagcagg 139964325
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 43 tcctcagtgtccggctctagctccggctgcagctccggctcgcgatgccccactccgtga 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139959535 tcctcagtgtccggctctagctccggctgcagctccggctcgcgatgccccactccgtga 139959594
Query: 103 ccctgcgcggcccttcgccctggggcttccgcctggtgggcggccgggacttcagcgtac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139959595 ccctgcgcggcccttcgccctggggcttccgcctggtgggcggccgggacttcagcgtac 139959654
Query: 163 ccctcaccatctcgcgggt 181
|||||||||||||||||||
Sbjct: 139959655 ccctcaccatctcgcgggt 139959673
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 759 ggggaacggccggggcctgccggcccccggaacctcaagccccccgccagcaagctgggc 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139973408 ggggaacggccggggcctgccggcccccggaacctcaagccccccgccagcaagctgggc 139973467
Query: 819 gctccgctgagcggcctgcaggggctgcccgagtgcacgcgctgcggccacggcatcgtg 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139973468 gctccgctgagcggcctgcaggggctgcccgagtgcacgcgctgcggccacggcatcgtg 139973527
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 329 caggcctgaaagcaggagctggcccagtaccccagaggagaacaaggctcaggcacacag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139968043 caggcctgaaagcaggagctggcccagtaccccagaggagaacaaggctcaggcacacag 139968102
Query: 389 gatccacattgaccccgaggcccagg 414
||||||||||||||||||||||||||
Sbjct: 139968103 gatccacattgaccccgaggcccagg 139968128
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,305,381
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 7
Length of query: 1134
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1113
Effective length of database: 2,808,413,156
Effective search space: 3125763842628
Effective search space used: 3125763842628
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)