Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003166
(1030 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069588.1| trafficking protein particle complex subunit... 284 8e-77
Alignment gi|NP_001192366.1| trafficking protein particle complex subunit... 224 7e-59
Alignment gi|XP_002690144.1| PREDICTED: BET3 like [Bos taurus]. 224 7e-59
>ref|NP_001069588.1| trafficking protein particle complex subunit 3 [Bos taurus].
Length = 151
Score = 284 bits (727), Expect = 8e-77
Identities = 140/143 (97%), Positives = 142/143 (99%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 489
ARSNVGRCHDF ETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD
Sbjct: 61 ARSNVGRCHDFLETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 490 NHSSLIYSNLLCGVLRGALEMVQ 558
NHSSLIYSNLLCGVLRGALEM++
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMIR 143
>ref|NP_001192366.1| trafficking protein particle complex subunit 3-like protein [Bos
taurus].
Length = 181
Score = 224 bits (572), Expect = 7e-59
Identities = 111/174 (63%), Positives = 138/174 (79%), Gaps = 1/174 (0%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSR A+R E +K++ +LF LTYGALV QLCKDYE DEDVNK LD MGY IG RL+EDFL
Sbjct: 1 MSRPAHRRPEYRKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDTMGYGIGTRLVEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFV-ELP 486
ARS V RCH + E AD+IA+VAFKMYLGITPS+T + + +EFSLIL+ NPLV+FV ELP
Sbjct: 61 ARSCVRRCHSYSEIADIIAQVAFKMYLGITPSVTCNNASRNEFSLILDKNPLVEFVEELP 120
Query: 487 DNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 648
SSL Y NLLCG++RGALEMV +A + F+QD LKGD VTEI + F++++++
Sbjct: 121 TGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKLDE 174
>ref|XP_002690144.1| PREDICTED: BET3 like [Bos taurus].
Length = 181
Score = 224 bits (572), Expect = 7e-59
Identities = 111/174 (63%), Positives = 138/174 (79%), Gaps = 1/174 (0%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSR A+R E +K++ +LF LTYGALV QLCKDYE DEDVNK LD MGY IG RL+EDFL
Sbjct: 1 MSRPAHRRPEYRKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDTMGYGIGTRLVEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFV-ELP 486
ARS V RCH + E AD+IA+VAFKMYLGITPS+T + + +EFSLIL+ NPLV+FV ELP
Sbjct: 61 ARSCVRRCHSYSEIADIIAQVAFKMYLGITPSVTCNNASRNEFSLILDKNPLVEFVEELP 120
Query: 487 DNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 648
SSL Y NLLCG++RGALEMV +A + F+QD LKGD VTEI + F++++++
Sbjct: 121 TGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKLDE 174
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,084,311
Number of extensions: 1198251
Number of successful extensions: 3740
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3734
Number of HSP's successfully gapped: 3
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003166
(1030 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539594.2| PREDICTED: similar to trafficking protein parti... 359 3e-99
Alignment gi|XP_855356.1| PREDICTED: similar to Trafficking protein parti... 213 2e-55
>ref|XP_539594.2| PREDICTED: similar to trafficking protein particle complex 3
(predicted) [Canis familiaris].
Length = 180
Score = 359 bits (921), Expect = 3e-99
Identities = 179/180 (99%), Positives = 180/180 (100%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 489
ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 490 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 669
NHSSLIYSNLLCGVLRGALEMVQMAVEA+FVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMVQMAVEARFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
>ref|XP_855356.1| PREDICTED: similar to Trafficking protein particle complex subunit
3 (BET3 homolog) [Canis familiaris].
Length = 284
Score = 213 bits (543), Expect = 2e-55
Identities = 105/160 (65%), Positives = 128/160 (80%), Gaps = 1/160 (0%)
Frame = +1
Query: 172 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 351
+ +LF LTYGALV QLCKDYE DEDVNK LDKMGY IG RL+EDFLARS V RCH + E
Sbjct: 118 NKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYGIGTRLVEDFLARSCVRRCHSYSEI 177
Query: 352 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFV-ELPDNHSSLIYSNLLCG 528
D+IA+VAFKMYLGITPS+T + + EFSLIL+ NPLV+FV ELP SSL Y NLLCG
Sbjct: 178 IDIIAQVAFKMYLGITPSVTCNNSSRTEFSLILDKNPLVEFVEELPAGRSSLCYCNLLCG 237
Query: 529 VLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 648
++RGALEMV +A + F+QDTLKGD VTEI + F++++++
Sbjct: 238 IIRGALEMVHLAADVTFLQDTLKGDRVTEIGITFLKKLDE 277
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,998,172
Number of extensions: 1243008
Number of successful extensions: 3805
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3799
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003166
(1030 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055223.1| trafficking protein particle complex subunit 3 ... 358 3e-99
Alignment gi|NP_001132916.1| trafficking protein particle complex subunit... 225 6e-59
>ref|NP_055223.1| trafficking protein particle complex subunit 3 [Homo sapiens].
Length = 180
Score = 358 bits (920), Expect = 3e-99
Identities = 179/180 (99%), Positives = 180/180 (100%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMG+NIGVRLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 489
ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 490 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 669
NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
>ref|NP_001132916.1| trafficking protein particle complex subunit 3-like protein [Homo
sapiens].
Length = 181
Score = 225 bits (573), Expect = 6e-59
Identities = 113/181 (62%), Positives = 140/181 (77%), Gaps = 1/181 (0%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSR A+R E K++ +LF LTYGALV QLCKDYE DEDVN+ LDKMGY IG RL+EDFL
Sbjct: 1 MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFV-ELP 486
ARS VGRCH + E D+IA+VAFKMYLGITPS+T + + +EFSLILE NPLV+FV ELP
Sbjct: 61 ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP 120
Query: 487 DNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGE 666
SSL Y NLLCG++RGALEMV +A + F+QD LKGD VTEI + F+++ ++ G+
Sbjct: 121 AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEKKYRGK 180
Query: 667 E 669
+
Sbjct: 181 K 181
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,195,752
Number of extensions: 1219822
Number of successful extensions: 3651
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3645
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003166
(1030 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038746.1| trafficking protein particle complex subunit 3 ... 358 5e-99
Alignment gi|NP_001156409.1| trafficking protein particle complex subunit... 219 3e-57
>ref|NP_038746.1| trafficking protein particle complex subunit 3 [Mus musculus].
Length = 180
Score = 358 bits (918), Expect = 5e-99
Identities = 178/180 (98%), Positives = 180/180 (100%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLD+MGYNIGVRLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 489
ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 490 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 669
NHS+LIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE
Sbjct: 121 NHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
>ref|NP_001156409.1| trafficking protein particle complex subunit 3-like protein [Mus
musculus].
Length = 181
Score = 219 bits (558), Expect = 3e-57
Identities = 108/174 (62%), Positives = 135/174 (77%), Gaps = 1/174 (0%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSR A++ E K++ +LF LTYGALV QLCKDYE DEDVNK LDKMGYNIG RL+EDFL
Sbjct: 1 MSRPAHKRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFV-ELP 486
ARS V RCH + E ++IA+VAFKMYLGITPS+T + + +EFSLIL NPL +FV ELP
Sbjct: 61 ARSCVRRCHSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELP 120
Query: 487 DNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 648
S+L Y NLLCG++RGALEMV +A F+QD LKGD VTEI + F++++++
Sbjct: 121 AGRSALCYCNLLCGIIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDE 174
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,493,840
Number of extensions: 1015994
Number of successful extensions: 2909
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2904
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003166
(1030 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362057.1| PREDICTED: trafficking protein particle comp... 360 e-100
Alignment gi|XP_003127837.1| PREDICTED: trafficking protein particle comp... 360 e-100
>ref|XP_003362057.1| PREDICTED: trafficking protein particle complex subunit 3-like [Sus
scrofa].
Length = 180
Score = 360 bits (924), Expect = e-100
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 489
ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 490 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 669
NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
>ref|XP_003127837.1| PREDICTED: trafficking protein particle complex subunit 3-like [Sus
scrofa].
Length = 180
Score = 360 bits (924), Expect = e-100
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = +1
Query: 130 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 309
MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 60
Query: 310 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 489
ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 490 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 669
NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,123,381
Number of extensions: 770123
Number of successful extensions: 2443
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2442
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003166
(1030 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 912 0.0
gb|JH118993.1| Sus scrofa unplaced genomic scaffold ChrUScaf4131 870 0.0
Sscrofa_Chr12 133 2e-28
Sscrofa_Chr01 62 6e-07
>Sscrofa_Chr06
|| Length = 157765593
Score = 912 bits (460), Expect = 0.0
Identities = 476/480 (99%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 552 ggtccagatggctgtggaggccaaatttgtccaggacaccctgaaaggagatggtgtgac 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85668353 ggtccagatggctgtggaggccaaatttgtccaggacaccctgaaaggagatggtgtgac 85668412
Query: 612 agaaatccggatgaggttcatcaggcggattgaggacaacctcccagctggagaggaatg 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85668413 agaaatccggatgaggttcatcaggcggattgaggacaacctcccagctggagaggaatg 85668472
Query: 672 accaggacttcaggacttcaggggagccagcaggagcacttggagtcagaaagcctcagt 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85668473 accaggacttcaggacttcaggggagccagcaggagcacttggagtcagaaagcctcagt 85668532
Query: 732 gctccctctgccctctaggattcagtgactctttaacacggatgtgatatattcttctaa 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85668533 gctccctctgccctctaggattcagtgactctttaacacggatgtgatatattcttctaa 85668592
Query: 792 ccttgtctccattcttcatgctaatagagcagactgtggtatagtccattcaccctacaa 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85668593 ccttgtctccattcttcatgctaatagagcagactgtggtatagtccattcaccctacaa 85668652
Query: 852 gtgtgcacattcaggagggaaattctttgctccctttcccttcagaggggctggaggtag 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85668653 gtgtgcacattcaggagggaaattctttgctccctttcccttcagaggggctggaggtag 85668712
Query: 912 tcatctttggttggactagaaagagctcaaaccattttacattcctgtttgaattttccg 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85668713 tcatctttggttggactagaaagagctcaaaccattttacattcctgtttgaattttccg 85668772
Query: 972 aagcagaa-ccactttgaccccattaagaaggcagcctagcacatgtatccccgggtctt 1030
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 85668773 aagcagaacccactttgaccccattaagaggcaagcctagcacatgtatccccgggtctt 85668832
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 368 aggtggcgttcaagatgtatttgggcatcactccaagcatcaccaattggagcccagctg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85667423 aggtggcgttcaagatgtatttgggcatcactccaagcatcaccaattggagcccagctg 85667482
Query: 428 gtgacgaattctccctcattttggaaaataatcccttggtggactttgtggaacttcctg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85667483 gtgacgaattctccctcattttggaaaataatcccttggtggactttgtggaacttcctg 85667542
Query: 488 ataaccactcatccctcatttattccaatctcttgtgcggggtgttacgaggcgccttgg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85667543 ataaccactcatccctcatttattccaatctcttgtgcggggtgttacgaggcgccttgg 85667602
Query: 548 agatggt 554
|||||||
Sbjct: 85667603 agatggt 85667609
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 3 aggcgcgcaggcgcggtgaggcggcacccgtcaatccccgacgctgtggggtcgctaact 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85658527 aggcgcgcaggcgcggtgaggcggcacccgtcaatccccgacgctgtggggtcgctaact 85658586
Query: 63 gggtccagaggttttaggaggggtcgccgggtgggtctgtggcgaggcggggtaggcggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85658587 gggtccagaggttttaggaggggtcgccgggtgggtctgtggcgaggcggggtaggcggc 85658646
Query: 123 cggcaccatgtcgaggcaggcgaatcgtggcaccgagagcaagaaaatg 171
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85658647 cggcaccatgtcgaggcaggcgaatcgtggcaccgagagcaagaaaatg 85658695
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 270 gggctataacattggagtccgactgattgaagatttcttggcacggtcaaatgtcgggag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85665846 gggctataacattggagtccgactgattgaagatttcttggcacggtcaaatgtcgggag 85665905
Query: 330 gtgccatgactttcgggaaactgcagatgtcattgccaaggt 371
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85665906 gtgccatgactttcgggaaactgcagatgtcattgccaaggt 85665947
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 171 gagctctgagctcttcaccctgacctatggggctctggtcacccagctgtgcaaggacta 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85665501 gagctctgagctcttcaccctgacctatggggctctggtcacccagctgtgcaaggacta 85665560
Query: 231 tgaaaatgacgaagatgtgaataaacagctggacaaaatg 270
||||||||||||||||||||||||||||||||||||||||
Sbjct: 85665561 tgaaaatgacgaagatgtgaataaacagctggacaaaatg 85665600
>gb|JH118993.1| Sus scrofa unplaced genomic scaffold ChrUScaf4131
Length = 128632
Score = 870 bits (439), Expect = 0.0
Identities = 473/482 (98%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 552 ggtccagatggctgtggaggccaaatttgtccaggacaccctgaaaggagatggtgtgac 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123923 ggtccagatggctgtggaggccaaatttgtccaggacaccctgaaaggagatggtgtgac 123982
Query: 612 agaaatccggatgaggttcatcaggcggattgaggacaacctcccagctggagaggaatg 671
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123983 agaaatccggatgagattcatcaggcggattgaggacaacctcccagctggagaggaatg 124042
Query: 672 accaggacttcaggacttcaggggagccagcaggagcacttggagtcagaaagcctcagt 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124043 accaggacttcaggacttcaggggagccagcaggagcacttggagtcagaaagcctcagt 124102
Query: 732 gctccctctgccctctaggattcagtgactctttaacacggatgtgatatattcttctaa 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124103 gctccctctgccctctaggattcagtgactctttaacacggatgtgatatattcttctaa 124162
Query: 792 ccttgtctccattcttcatgcta--atagagcagactgtggtatagtccattcaccctac 849
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 124163 ccttgtctccattcttcatgctagtaaagagcagactgtggtatagtccattcaccctac 124222
Query: 850 aagtgtgcacattcaggagggaaattctttgctccctttcccttcagaggggctggaggt 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 124223 aagtgtgcacattcaggagggaaattctttgctccctttcccttcagaggggctggatgt 124282
Query: 910 agtcatctttggttggactagaaagagctcaaaccattttacattcctgtttgaattttc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124283 agtcatctttggttggactagaaagagctcaaaccattttacattcctgtttgaattttc 124342
Query: 970 cgaagcagaa-ccactttgaccccattaagaaggcagcctagcacatgtatccccgggtc 1028
|||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 124343 cgaagcagaacccactttgaccccattaagaggcaagcctagcacatgtatccccgggtc 124402
Query: 1029 tt 1030
||
Sbjct: 124403 tt 124404
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 368 aggtggcgttcaagatgtatttgggcatcactccaagcatcaccaattggagcccagctg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122998 aggtggcgttcaagatgtatttgggcatcactccaagcatcaccaattggagcccagctg 123057
Query: 428 gtgacgaattctccctcattttggaaaataatcccttggtggactttgtggaacttcctg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123058 gtgacgaattctccctcattttggaaaataatcccttggtggactttgtggaacttcctg 123117
Query: 488 ataaccactcatccctcatttattccaatctcttgtgcggggtgttacgaggcgccttgg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123118 ataaccactcatccctcatttattccaatctcttgtgcggggtgttacgaggcgccttgg 123177
Query: 548 agatggt 554
|||||||
Sbjct: 123178 agatggt 123184
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 270 gggctataacattggagtccgactgattgaagatttcttggcacggtcaaatgtcgggag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121616 gggctataacattggagtccgactgattgaagatttcttggcacggtcaaatgtcgggag 121675
Query: 330 gtgccatgactttcgggaaactgcagatgtcattgccaaggt 371
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121676 gtgccatgactttcgggaaactgcagatgtcattgccaaggt 121717
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 171 gagctctgagctcttcaccctgacctatggggctctggtcacccagctgtgcaaggacta 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121271 gagctctgagctcttcaccctgacctatggggctctggtcacccagctgtgcaaggacta 121330
Query: 231 tgaaaatgacgaagatgtgaataaacagctggacaaaatg 270
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121331 tgaaaatgacgaagatgtgaataaacagctggacaaaatg 121370
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 106 gaggcggggtaggcggccggcaccatgtcgaggcaggcgaatcgtggcaccgagagcaag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114657 gaggcggggtaggcggccggcaccatgtcgaggcaggcgaatcgtggcaccgagagcaag 114716
Query: 166 aaaatg 171
||||||
Sbjct: 114717 aaaatg 114722
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 3 aggcgcgcaggcgcggtgaggcggcacccgtcaat 37
|||||||||||||||||||||||||||||||||||
Sbjct: 114522 aggcgcgcaggcgcggtgaggcggcacccgtcaat 114556
>Sscrofa_Chr12
|| Length = 63588571
Score = 133 bits (67), Expect = 2e-28
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 761 tctttaacacggatgtgatatattcttctaaccttgtctccattcttcatgctaat--ag 818
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 45733665 tctttaacacggatgtgatatattcttccaaccttgtctccattcttcatgctaataaag 45733724
Query: 819 agcagactgtggtatagtccattcacccta 848
||||||||||| ||||||||||| ||||||
Sbjct: 45733725 agcagactgtgatatagtccatttacccta 45733754
>Sscrofa_Chr01
|| Length = 315321322
Score = 61.9 bits (31), Expect = 6e-07
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 193 acctatggggctctggtcacccagctgtgcaaggactatgaaaatgacgaagatgtgaat 252
|||||||| |||||||| |||| || |||||||| |||||||| || ||||||||||||
Sbjct: 92363669 acctatggagctctggttgcccaactctgcaaggattatgaaaaagatgaagatgtgaat 92363610
Query: 253 aaa 255
|||
Sbjct: 92363609 aaa 92363607
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,901,602
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 13
Length of query: 1030
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1009
Effective length of database: 2,808,413,156
Effective search space: 2833688874404
Effective search space used: 2833688874404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)