Animal-Genome cDNA 20110601C-003170


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003170
         (894 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002690215.1| PREDICTED: chromosome 6 open reading frame 1...   234   1e-61
Alignment   gi|XP_001251733.2| PREDICTED: chromosome 6 open reading frame 1...   234   1e-61

>ref|XP_002690215.1| PREDICTED: chromosome 6 open reading frame 168-like [Bos taurus].
          Length = 345

 Score =  234 bits (596), Expect = 1e-61
 Identities = 111/113 (98%), Positives = 112/113 (99%)
 Frame = +3

Query: 336 IRKQQVIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 515
           +RKQQ IDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM
Sbjct: 24  VRKQQEIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 83

Query: 516 PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 674
           PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW
Sbjct: 84  PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 136



 Score =  159 bits (401), Expect = 4e-39
 Identities = 72/74 (97%), Positives = 74/74 (100%)
 Frame = +1

Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
           GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 211 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 270

Query: 853 HHDDDHTIYESEES 894
           HHDDD+TIYESEES
Sbjct: 271 HHDDDNTIYESEES 284


>ref|XP_001251733.2| PREDICTED: chromosome 6 open reading frame 168-like [Bos taurus].
          Length = 258

 Score =  234 bits (596), Expect = 1e-61
 Identities = 111/113 (98%), Positives = 112/113 (99%)
 Frame = +3

Query: 336 IRKQQVIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 515
           +RKQQ IDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM
Sbjct: 24  VRKQQEIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 83

Query: 516 PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 674
           PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW
Sbjct: 84  PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 136


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,080,087
Number of extensions: 882965
Number of successful extensions: 3765
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3728
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 196
Effective length of database: 14,306,398
Effective search space: 2804054008
Effective search space used: 2804054008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003170
         (894 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532240.2| PREDICTED: similar to Y57A10A.26 [Canis familia...   260   1e-69

>ref|XP_532240.2| PREDICTED: similar to Y57A10A.26 [Canis familiaris].
          Length = 587

 Score =  260 bits (664), Expect = 1e-69
 Identities = 126/144 (87%), Positives = 126/144 (87%)
 Frame = +3

Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
           LGSDPWWKK                 HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLS
Sbjct: 235 LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLS 294

Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
           PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN
Sbjct: 295 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 354

Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
           KNLGPHERAISRAVTKMVEEHFYW
Sbjct: 355 KNLGPHERAISRAVTKMVEEHFYW 378



 Score =  159 bits (401), Expect = 4e-39
 Identities = 72/74 (97%), Positives = 74/74 (100%)
 Frame = +1

Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
           GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 453 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 512

Query: 853 HHDDDHTIYESEES 894
           HHDDD+TIYESEES
Sbjct: 513 HHDDDNTIYESEES 526


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,641,856
Number of extensions: 917020
Number of successful extensions: 3744
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3716
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 196
Effective length of database: 15,474,232
Effective search space: 3032949472
Effective search space used: 3032949472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003170
         (894 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_115900.1| hypothetical protein LOC84553 [Homo sapiens].        260   1e-69

>ref|NP_115900.1| hypothetical protein LOC84553 [Homo sapiens].
          Length = 409

 Score =  260 bits (664), Expect = 1e-69
 Identities = 126/144 (87%), Positives = 126/144 (87%)
 Frame = +3

Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
           LGSDPWWKK                 HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLS
Sbjct: 57  LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLS 116

Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
           PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN
Sbjct: 117 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 176

Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
           KNLGPHERAISRAVTKMVEEHFYW
Sbjct: 177 KNLGPHERAISRAVTKMVEEHFYW 200



 Score =  159 bits (401), Expect = 4e-39
 Identities = 72/74 (97%), Positives = 74/74 (100%)
 Frame = +1

Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
           GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 275 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 334

Query: 853 HHDDDHTIYESEES 894
           HHDDD+TIYESEES
Sbjct: 335 HHDDDNTIYESEES 348


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,872,380
Number of extensions: 893315
Number of successful extensions: 3490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3454
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 196
Effective length of database: 14,934,836
Effective search space: 2927227856
Effective search space used: 2927227856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003170
         (894 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_780443.2| hypothetical protein LOC76132 [Mus musculus].        254   6e-68

>ref|NP_780443.2| hypothetical protein LOC76132 [Mus musculus].
          Length = 409

 Score =  254 bits (649), Expect = 6e-68
 Identities = 122/144 (84%), Positives = 126/144 (87%)
 Frame = +3

Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
           LGSDPWWKK                 HELLVIRKQQ +DSKDAIILHQFARPNNGVPSLS
Sbjct: 57  LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQELDSKDAIILHQFARPNNGVPSLS 116

Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
           PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYN+EKVSGTEFIIDFLEEKLGVNLN
Sbjct: 117 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNNEKVSGTEFIIDFLEEKLGVNLN 176

Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
           K+LGPHERA+SRAVTKMVEEHFYW
Sbjct: 177 KSLGPHERAVSRAVTKMVEEHFYW 200



 Score =  159 bits (401), Expect = 4e-39
 Identities = 72/74 (97%), Positives = 74/74 (100%)
 Frame = +1

Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
           GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 275 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 334

Query: 853 HHDDDHTIYESEES 894
           HHDDD+TIYESEES
Sbjct: 335 HHDDDNTIYESEES 348


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,583,216
Number of extensions: 745959
Number of successful extensions: 2861
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2815
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 197
Effective length of database: 12,583,923
Effective search space: 2479032831
Effective search space used: 2479032831
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003170
         (894 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003121364.2| PREDICTED: uncharacterized protein C6orf168-...   260   8e-70
Alignment   gi|XP_003360591.1| PREDICTED: uncharacterized protein C6orf168-...   245   2e-65

>ref|XP_003121364.2| PREDICTED: uncharacterized protein C6orf168-like [Sus scrofa].
          Length = 370

 Score =  260 bits (664), Expect = 8e-70
 Identities = 126/144 (87%), Positives = 126/144 (87%)
 Frame = +3

Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
           LGSDPWWKK                 HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLS
Sbjct: 57  LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLS 116

Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
           PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN
Sbjct: 117 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 176

Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
           KNLGPHERAISRAVTKMVEEHFYW
Sbjct: 177 KNLGPHERAISRAVTKMVEEHFYW 200



 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = +1

Query: 790 GELINLALYCERIRRKFWPEWHHDDDHTIYESEES 894
           GELINLA+YCERIRRKFWPEWHHDDD+TIYESEES
Sbjct: 275 GELINLAMYCERIRRKFWPEWHHDDDNTIYESEES 309


>ref|XP_003360591.1| PREDICTED: uncharacterized protein C6orf168-like [Sus scrofa].
          Length = 365

 Score =  245 bits (626), Expect = 2e-65
 Identities = 120/138 (86%), Positives = 120/138 (86%)
 Frame = +3

Query: 261 WKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLSPFCLKM 440
           WKK                 HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLSPFCLKM
Sbjct: 19  WKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLSPFCLKM 78

Query: 441 ETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPH 620
           ETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPH
Sbjct: 79  ETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPH 138

Query: 621 ERAISRAVTKMVEEHFYW 674
           ERAISRAVTKMVEEHFYW
Sbjct: 139 ERAISRAVTKMVEEHFYW 156



 Score =  159 bits (401), Expect = 3e-39
 Identities = 72/74 (97%), Positives = 74/74 (100%)
 Frame = +1

Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
           GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 231 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 290

Query: 853 HHDDDHTIYESEES 894
           HHDDD+TIYESEES
Sbjct: 291 HHDDDNTIYESEES 304


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,345,555
Number of extensions: 572043
Number of successful extensions: 2552
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2520
Number of HSP's successfully gapped: 4
Length of query: 298
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,904,026
Effective search space: 1780805200
Effective search space used: 1780805200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003170
         (894 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         799   0.0  
gb|JH118404.1| Sus scrofa unplaced genomic scaffold ChrUScaf142       394   e-107
Sscrofa_Chr01                                                         394   e-107

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  799 bits (403), Expect = 0.0
 Identities = 609/673 (90%), Gaps = 6/673 (0%)
 Strand = Plus / Minus

                                                                            
Query: 221      ttacggtgggatcatggcagggctgggctccgatccctggtggaagaaaaccctttactt 280
                |||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||| ||
Sbjct: 33168861 ttacggtgggatcatgtctgggctaggctcccatccctggtggaagaaaaccctttattt 33168802

                                                                            
Query: 281      gaccgggggagctttgctggccgcagctgcgtatctgctccacgaactcctggtcattag 340
                ||||      ||||||||||||| |||||| |||||||||||||||||||||||||||| 
Sbjct: 33168801 gacccacaacgctttgctggccgaagctgcatatctgctccacgaactcctggtcattaa 33168742

                                                                            
Query: 341      gaaacagcaggtgattgactccaaagatgctattattttgcatcagtttgcaagacctaa 400
                |||||| || | ||||||||||||||||||||||||||||||||  |||  |||||||||
Sbjct: 33168741 gaaacatcaagagattgactccaaagatgctattattttgcatct-tttataagacctaa 33168683

                                                                            
Query: 401      caatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatggc 460
                |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 33168682 caatggtgtccccagtttatctccatgctgcctgaaaatggaaacttatttaaggatggc 33168623

                                                                            
Query: 461      tgacttaccctatcagaactattttggtggaaaactctctgctcaaggaaaaatgccttg 520
                ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 33168622 tgacttaccctatcagaactattttggtggaaaactctctgctaaggggaaaatgccttg 33168563

                                                                            
Query: 521      gattgaatataaccatgaaaaagtttctgggacagaattcataattgactttctggaaga 580
                |||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 33168562 gattgaatattatcatgaaaaa-tttctggaacagaattcataattgactttctggaaga 33168504

                                                                            
Query: 581      gaaacttggagtgaatttaaacaaaaaccttggtcctcatgaaagagccatctccagggc 640
                |||||| ||| || |||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 33168503 gaaactaggaatgcatttaaacaaaagccttggtcctcatgaaagagccatcttcagggc 33168444

                                                                            
Query: 641      ggtgactaagatggtggaggagcatttctactggtgataagaagtacatcatggggccca 700
                 ||||| |||||||| || ||||||||||||||||||||||||||  |||||||| || |
Sbjct: 33168443 tgtgaccaagatggtagaagagcatttctactggtgataagaagtgaatcatgggtccta 33168384

                                                                            
Query: 701      agctttccactctcgacgccactgtgtttggacacttggcacaggcaatgtggaccttac 760
                |||||||||||||||| |||||||| |||||||||||||| || |||||||| |||||||
Sbjct: 33168383 agctttccactctcgaggccactgtttttggacacttggc-caagcaatgtgaaccttac 33168325

                                                                            
Query: 761      ctgggacgagacctgagcggctgataaaaggtgagctgatcaatctggccttgtactgtg 820
                ||| || |||||||||  |||||||||| ||||||||||||||||||||| ||| || ||
Sbjct: 33168324 ctgtgatgagacctgaagggctgataaagggtgagctgatcaatctggccatgtgctatg 33168265

                                                                            
Query: 821      agaggataaggaggaaattctggcccgagtggcaccatgatgatgaccataccatctatg 880
                ||||||||||||||||||| ||||| |||||||||||||||||| ||   ||||||||||
Sbjct: 33168264 agaggataaggaggaaattttggcctgagtggcaccatgatgataac---accatctatg 33168208

                             
Query: 881      agtccgaggagag 893
                ||||| |||||||
Sbjct: 33168207 agtcccaggagag 33168195


>gb|JH118404.1| Sus scrofa unplaced genomic scaffold ChrUScaf142
          Length = 120543

 Score =  394 bits (199), Expect = e-107
 Identities = 202/203 (99%)
 Strand = Plus / Minus

                                                                         
Query: 475   agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataacc 534
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 62457 agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataatc 62398

                                                                         
Query: 535   atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 594
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62397 atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 62338

                                                                         
Query: 595   atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 654
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337 atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 62278

                                    
Query: 655   tggaggagcatttctactggtga 677
             |||||||||||||||||||||||
Sbjct: 62277 tggaggagcatttctactggtga 62255



 Score =  266 bits (134), Expect = 2e-68
 Identities = 137/138 (99%)
 Strand = Plus / Minus

                                                                         
Query: 339   aggaaacagcaggtgattgactccaaagatgctattattttgcatcagtttgcaagacct 398
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72581 aggaaacagcaggagattgactccaaagatgctattattttgcatcagtttgcaagacct 72522

                                                                         
Query: 399   aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 458
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72521 aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 72462

                               
Query: 459   gctgacttaccctatcag 476
             ||||||||||||||||||
Sbjct: 72461 gctgacttaccctatcag 72444



 Score =  228 bits (115), Expect = 4e-57
 Identities = 118/119 (99%)
 Strand = Plus / Minus

                                                                         
Query: 673   ggtgataagaagtacatcatggggcccaagctttccactctcgacgccactgtgtttgga 732
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 21081 ggtgataagaagtacatcatggggcccaagctttccactctcgatgccactgtgtttgga 21022

                                                                        
Query: 733   cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 791
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21021 cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 20963



 Score =  194 bits (98), Expect = 6e-47
 Identities = 104/106 (98%)
 Strand = Plus / Minus

                                                                         
Query: 789   aggtgagctgatcaatctggccttgtactgtgagaggataaggaggaaattctggcccga 848
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13172 aggtgagctgatcaatctggccatgtactgtgagaggataaggaggaaattctggcccga 13113

                                                           
Query: 849   gtggcaccatgatgatgaccataccatctatgagtccgaggagagc 894
             ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13112 gtggcaccatgatgatgacaataccatctatgagtccgaggagagc 13067



 Score =  176 bits (89), Expect = 1e-41
 Identities = 89/89 (100%)
 Strand = Plus / Minus

                                                                         
Query: 253   atccctggtggaagaaaaccctttacttgaccgggggagctttgctggccgcagctgcgt 312
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78768 atccctggtggaagaaaaccctttacttgaccgggggagctttgctggccgcagctgcgt 78709

                                          
Query: 313   atctgctccacgaactcctggtcattagg 341
             |||||||||||||||||||||||||||||
Sbjct: 78708 atctgctccacgaactcctggtcattagg 78680


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  394 bits (199), Expect = e-107
 Identities = 202/203 (99%)
 Strand = Plus / Plus

                                                                            
Query: 475      agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataacc 534
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 75006263 agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataatc 75006322

                                                                            
Query: 535      atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 594
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75006323 atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 75006382

                                                                            
Query: 595      atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 654
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75006383 atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 75006442

                                       
Query: 655      tggaggagcatttctactggtga 677
                |||||||||||||||||||||||
Sbjct: 75006443 tggaggagcatttctactggtga 75006465



 Score =  319 bits (161), Expect = 1e-84
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ccgccgcgggttggggggacgcagatccgggcccaactgcagcttcctcctggcggagct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74987334 ccgccgcgggttggggggacgcagatccgggcccaactgcagcttcctcctggcggagct 74987393

                                                                            
Query: 61       gcatttccagccacctccgcagccctgccctcgcgcgccgagccgttccggcggtgccgc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74987394 gcatttccagccacctccgcagccctgccctcgcgcgccgagccgttccggcggtgccgc 74987453

                                                         
Query: 121      tggaggcgcggagcccgcccggcgcgcccagccctgcagct 161
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 74987454 tggaggcgcggagcccgcccggcgcgcccagccctgcagct 74987494



 Score =  266 bits (134), Expect = 2e-68
 Identities = 137/138 (99%)
 Strand = Plus / Plus

                                                                            
Query: 339      aggaaacagcaggtgattgactccaaagatgctattattttgcatcagtttgcaagacct 398
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74994077 aggaaacagcaggagattgactccaaagatgctattattttgcatcagtttgcaagacct 74994136

                                                                            
Query: 399      aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 458
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74994137 aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 74994196

                                  
Query: 459      gctgacttaccctatcag 476
                ||||||||||||||||||
Sbjct: 74994197 gctgacttaccctatcag 74994214



 Score =  240 bits (121), Expect = 1e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                            
Query: 221      ttacggtgggatcatggcagggctgggctccgatccctggtggaagaaaaccctttactt 280
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74988029 ttacggtgggatcatggcagggctgggctccgatccctggtggaagaaaaccctttactt 74988088

                                                                            
Query: 281      gaccgggggagctttgctggccgcagctgcgtatctgctccacgaactcctggtcattag 340
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74988089 gaccgggggagctttgctggccgcagctgcgtatctgctccacgaactcctggtcattag 74988148

                 
Query: 341      g 341
                |
Sbjct: 74988149 g 74988149



 Score =  228 bits (115), Expect = 4e-57
 Identities = 118/119 (99%)
 Strand = Plus / Minus

                                                                            
Query: 673      ggtgataagaagtacatcatggggcccaagctttccactctcgacgccactgtgtttgga 732
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 74948570 ggtgataagaagtacatcatggggcccaagctttccactctcgatgccactgtgtttgga 74948511

                                                                           
Query: 733      cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 791
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74948510 cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 74948452



 Score =  194 bits (98), Expect = 6e-47
 Identities = 104/106 (98%)
 Strand = Plus / Minus

                                                                            
Query: 789      aggtgagctgatcaatctggccttgtactgtgagaggataaggaggaaattctggcccga 848
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 74939499 aggtgagctgatcaatctggccatgtactgtgagaggataaggaggaaattctggcccga 74939440

                                                              
Query: 849      gtggcaccatgatgatgaccataccatctatgagtccgaggagagc 894
                ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 74939439 gtggcaccatgatgatgacaataccatctatgagtccgaggagagc 74939394


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,527,129
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 13
Length of query: 894
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 873
Effective length of database: 2,808,413,156
Effective search space: 2451744685188
Effective search space used: 2451744685188
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)