Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003170
(894 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002690215.1| PREDICTED: chromosome 6 open reading frame 1... 234 1e-61
Alignment gi|XP_001251733.2| PREDICTED: chromosome 6 open reading frame 1... 234 1e-61
>ref|XP_002690215.1| PREDICTED: chromosome 6 open reading frame 168-like [Bos taurus].
Length = 345
Score = 234 bits (596), Expect = 1e-61
Identities = 111/113 (98%), Positives = 112/113 (99%)
Frame = +3
Query: 336 IRKQQVIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 515
+RKQQ IDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM
Sbjct: 24 VRKQQEIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 83
Query: 516 PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 674
PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW
Sbjct: 84 PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 136
Score = 159 bits (401), Expect = 4e-39
Identities = 72/74 (97%), Positives = 74/74 (100%)
Frame = +1
Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 211 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 270
Query: 853 HHDDDHTIYESEES 894
HHDDD+TIYESEES
Sbjct: 271 HHDDDNTIYESEES 284
>ref|XP_001251733.2| PREDICTED: chromosome 6 open reading frame 168-like [Bos taurus].
Length = 258
Score = 234 bits (596), Expect = 1e-61
Identities = 111/113 (98%), Positives = 112/113 (99%)
Frame = +3
Query: 336 IRKQQVIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 515
+RKQQ IDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM
Sbjct: 24 VRKQQEIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKM 83
Query: 516 PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 674
PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW
Sbjct: 84 PWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYW 136
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,080,087
Number of extensions: 882965
Number of successful extensions: 3765
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3728
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 196
Effective length of database: 14,306,398
Effective search space: 2804054008
Effective search space used: 2804054008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003170
(894 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532240.2| PREDICTED: similar to Y57A10A.26 [Canis familia... 260 1e-69
>ref|XP_532240.2| PREDICTED: similar to Y57A10A.26 [Canis familiaris].
Length = 587
Score = 260 bits (664), Expect = 1e-69
Identities = 126/144 (87%), Positives = 126/144 (87%)
Frame = +3
Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
LGSDPWWKK HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLS
Sbjct: 235 LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLS 294
Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN
Sbjct: 295 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 354
Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
KNLGPHERAISRAVTKMVEEHFYW
Sbjct: 355 KNLGPHERAISRAVTKMVEEHFYW 378
Score = 159 bits (401), Expect = 4e-39
Identities = 72/74 (97%), Positives = 74/74 (100%)
Frame = +1
Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 453 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 512
Query: 853 HHDDDHTIYESEES 894
HHDDD+TIYESEES
Sbjct: 513 HHDDDNTIYESEES 526
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,641,856
Number of extensions: 917020
Number of successful extensions: 3744
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3716
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 196
Effective length of database: 15,474,232
Effective search space: 3032949472
Effective search space used: 3032949472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003170
(894 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115900.1| hypothetical protein LOC84553 [Homo sapiens]. 260 1e-69
>ref|NP_115900.1| hypothetical protein LOC84553 [Homo sapiens].
Length = 409
Score = 260 bits (664), Expect = 1e-69
Identities = 126/144 (87%), Positives = 126/144 (87%)
Frame = +3
Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
LGSDPWWKK HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLS
Sbjct: 57 LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLS 116
Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN
Sbjct: 117 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 176
Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
KNLGPHERAISRAVTKMVEEHFYW
Sbjct: 177 KNLGPHERAISRAVTKMVEEHFYW 200
Score = 159 bits (401), Expect = 4e-39
Identities = 72/74 (97%), Positives = 74/74 (100%)
Frame = +1
Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 275 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 334
Query: 853 HHDDDHTIYESEES 894
HHDDD+TIYESEES
Sbjct: 335 HHDDDNTIYESEES 348
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,872,380
Number of extensions: 893315
Number of successful extensions: 3490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3454
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 196
Effective length of database: 14,934,836
Effective search space: 2927227856
Effective search space used: 2927227856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003170
(894 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780443.2| hypothetical protein LOC76132 [Mus musculus]. 254 6e-68
>ref|NP_780443.2| hypothetical protein LOC76132 [Mus musculus].
Length = 409
Score = 254 bits (649), Expect = 6e-68
Identities = 122/144 (84%), Positives = 126/144 (87%)
Frame = +3
Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
LGSDPWWKK HELLVIRKQQ +DSKDAIILHQFARPNNGVPSLS
Sbjct: 57 LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQELDSKDAIILHQFARPNNGVPSLS 116
Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYN+EKVSGTEFIIDFLEEKLGVNLN
Sbjct: 117 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNNEKVSGTEFIIDFLEEKLGVNLN 176
Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
K+LGPHERA+SRAVTKMVEEHFYW
Sbjct: 177 KSLGPHERAVSRAVTKMVEEHFYW 200
Score = 159 bits (401), Expect = 4e-39
Identities = 72/74 (97%), Positives = 74/74 (100%)
Frame = +1
Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 275 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 334
Query: 853 HHDDDHTIYESEES 894
HHDDD+TIYESEES
Sbjct: 335 HHDDDNTIYESEES 348
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,583,216
Number of extensions: 745959
Number of successful extensions: 2861
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2815
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 197
Effective length of database: 12,583,923
Effective search space: 2479032831
Effective search space used: 2479032831
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003170
(894 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121364.2| PREDICTED: uncharacterized protein C6orf168-... 260 8e-70
Alignment gi|XP_003360591.1| PREDICTED: uncharacterized protein C6orf168-... 245 2e-65
>ref|XP_003121364.2| PREDICTED: uncharacterized protein C6orf168-like [Sus scrofa].
Length = 370
Score = 260 bits (664), Expect = 8e-70
Identities = 126/144 (87%), Positives = 126/144 (87%)
Frame = +3
Query: 243 LGSDPWWKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLS 422
LGSDPWWKK HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLS
Sbjct: 57 LGSDPWWKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLS 116
Query: 423 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 602
PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN
Sbjct: 117 PFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLN 176
Query: 603 KNLGPHERAISRAVTKMVEEHFYW 674
KNLGPHERAISRAVTKMVEEHFYW
Sbjct: 177 KNLGPHERAISRAVTKMVEEHFYW 200
Score = 79.3 bits (194), Expect = 3e-15
Identities = 33/35 (94%), Positives = 35/35 (100%)
Frame = +1
Query: 790 GELINLALYCERIRRKFWPEWHHDDDHTIYESEES 894
GELINLA+YCERIRRKFWPEWHHDDD+TIYESEES
Sbjct: 275 GELINLAMYCERIRRKFWPEWHHDDDNTIYESEES 309
>ref|XP_003360591.1| PREDICTED: uncharacterized protein C6orf168-like [Sus scrofa].
Length = 365
Score = 245 bits (626), Expect = 2e-65
Identities = 120/138 (86%), Positives = 120/138 (86%)
Frame = +3
Query: 261 WKKXXXXXXXXXXXXXXXXXHELLVIRKQQVIDSKDAIILHQFARPNNGVPSLSPFCLKM 440
WKK HELLVIRKQQ IDSKDAIILHQFARPNNGVPSLSPFCLKM
Sbjct: 19 WKKTLYLTGGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLSPFCLKM 78
Query: 441 ETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPH 620
ETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPH
Sbjct: 79 ETYLRMADLPYQNYFGGKLSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPH 138
Query: 621 ERAISRAVTKMVEEHFYW 674
ERAISRAVTKMVEEHFYW
Sbjct: 139 ERAISRAVTKMVEEHFYW 156
Score = 159 bits (401), Expect = 3e-39
Identities = 72/74 (97%), Positives = 74/74 (100%)
Frame = +1
Query: 673 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLALYCERIRRKFWPEW 852
GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLA+YCERIRRKFWPEW
Sbjct: 231 GDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEW 290
Query: 853 HHDDDHTIYESEES 894
HHDDD+TIYESEES
Sbjct: 291 HHDDDNTIYESEES 304
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,345,555
Number of extensions: 572043
Number of successful extensions: 2552
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2520
Number of HSP's successfully gapped: 4
Length of query: 298
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,904,026
Effective search space: 1780805200
Effective search space used: 1780805200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003170
(894 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 799 0.0
gb|JH118404.1| Sus scrofa unplaced genomic scaffold ChrUScaf142 394 e-107
Sscrofa_Chr01 394 e-107
>Sscrofa_Chr15
|| Length = 157681621
Score = 799 bits (403), Expect = 0.0
Identities = 609/673 (90%), Gaps = 6/673 (0%)
Strand = Plus / Minus
Query: 221 ttacggtgggatcatggcagggctgggctccgatccctggtggaagaaaaccctttactt 280
|||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||| ||
Sbjct: 33168861 ttacggtgggatcatgtctgggctaggctcccatccctggtggaagaaaaccctttattt 33168802
Query: 281 gaccgggggagctttgctggccgcagctgcgtatctgctccacgaactcctggtcattag 340
|||| ||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 33168801 gacccacaacgctttgctggccgaagctgcatatctgctccacgaactcctggtcattaa 33168742
Query: 341 gaaacagcaggtgattgactccaaagatgctattattttgcatcagtttgcaagacctaa 400
|||||| || | |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 33168741 gaaacatcaagagattgactccaaagatgctattattttgcatct-tttataagacctaa 33168683
Query: 401 caatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatggc 460
|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 33168682 caatggtgtccccagtttatctccatgctgcctgaaaatggaaacttatttaaggatggc 33168623
Query: 461 tgacttaccctatcagaactattttggtggaaaactctctgctcaaggaaaaatgccttg 520
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 33168622 tgacttaccctatcagaactattttggtggaaaactctctgctaaggggaaaatgccttg 33168563
Query: 521 gattgaatataaccatgaaaaagtttctgggacagaattcataattgactttctggaaga 580
|||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 33168562 gattgaatattatcatgaaaaa-tttctggaacagaattcataattgactttctggaaga 33168504
Query: 581 gaaacttggagtgaatttaaacaaaaaccttggtcctcatgaaagagccatctccagggc 640
|||||| ||| || |||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 33168503 gaaactaggaatgcatttaaacaaaagccttggtcctcatgaaagagccatcttcagggc 33168444
Query: 641 ggtgactaagatggtggaggagcatttctactggtgataagaagtacatcatggggccca 700
||||| |||||||| || |||||||||||||||||||||||||| |||||||| || |
Sbjct: 33168443 tgtgaccaagatggtagaagagcatttctactggtgataagaagtgaatcatgggtccta 33168384
Query: 701 agctttccactctcgacgccactgtgtttggacacttggcacaggcaatgtggaccttac 760
|||||||||||||||| |||||||| |||||||||||||| || |||||||| |||||||
Sbjct: 33168383 agctttccactctcgaggccactgtttttggacacttggc-caagcaatgtgaaccttac 33168325
Query: 761 ctgggacgagacctgagcggctgataaaaggtgagctgatcaatctggccttgtactgtg 820
||| || ||||||||| |||||||||| ||||||||||||||||||||| ||| || ||
Sbjct: 33168324 ctgtgatgagacctgaagggctgataaagggtgagctgatcaatctggccatgtgctatg 33168265
Query: 821 agaggataaggaggaaattctggcccgagtggcaccatgatgatgaccataccatctatg 880
||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||
Sbjct: 33168264 agaggataaggaggaaattttggcctgagtggcaccatgatgataac---accatctatg 33168208
Query: 881 agtccgaggagag 893
||||| |||||||
Sbjct: 33168207 agtcccaggagag 33168195
>gb|JH118404.1| Sus scrofa unplaced genomic scaffold ChrUScaf142
Length = 120543
Score = 394 bits (199), Expect = e-107
Identities = 202/203 (99%)
Strand = Plus / Minus
Query: 475 agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataacc 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 62457 agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataatc 62398
Query: 535 atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62397 atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 62338
Query: 595 atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62337 atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 62278
Query: 655 tggaggagcatttctactggtga 677
|||||||||||||||||||||||
Sbjct: 62277 tggaggagcatttctactggtga 62255
Score = 266 bits (134), Expect = 2e-68
Identities = 137/138 (99%)
Strand = Plus / Minus
Query: 339 aggaaacagcaggtgattgactccaaagatgctattattttgcatcagtttgcaagacct 398
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72581 aggaaacagcaggagattgactccaaagatgctattattttgcatcagtttgcaagacct 72522
Query: 399 aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72521 aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 72462
Query: 459 gctgacttaccctatcag 476
||||||||||||||||||
Sbjct: 72461 gctgacttaccctatcag 72444
Score = 228 bits (115), Expect = 4e-57
Identities = 118/119 (99%)
Strand = Plus / Minus
Query: 673 ggtgataagaagtacatcatggggcccaagctttccactctcgacgccactgtgtttgga 732
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 21081 ggtgataagaagtacatcatggggcccaagctttccactctcgatgccactgtgtttgga 21022
Query: 733 cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21021 cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 20963
Score = 194 bits (98), Expect = 6e-47
Identities = 104/106 (98%)
Strand = Plus / Minus
Query: 789 aggtgagctgatcaatctggccttgtactgtgagaggataaggaggaaattctggcccga 848
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13172 aggtgagctgatcaatctggccatgtactgtgagaggataaggaggaaattctggcccga 13113
Query: 849 gtggcaccatgatgatgaccataccatctatgagtccgaggagagc 894
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13112 gtggcaccatgatgatgacaataccatctatgagtccgaggagagc 13067
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 253 atccctggtggaagaaaaccctttacttgaccgggggagctttgctggccgcagctgcgt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78768 atccctggtggaagaaaaccctttacttgaccgggggagctttgctggccgcagctgcgt 78709
Query: 313 atctgctccacgaactcctggtcattagg 341
|||||||||||||||||||||||||||||
Sbjct: 78708 atctgctccacgaactcctggtcattagg 78680
>Sscrofa_Chr01
|| Length = 315321322
Score = 394 bits (199), Expect = e-107
Identities = 202/203 (99%)
Strand = Plus / Plus
Query: 475 agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataacc 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 75006263 agaactattttggtggaaaactctctgctcaaggaaaaatgccttggattgaatataatc 75006322
Query: 535 atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75006323 atgaaaaagtttctgggacagaattcataattgactttctggaagagaaacttggagtga 75006382
Query: 595 atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75006383 atttaaacaaaaaccttggtcctcatgaaagagccatctccagggcggtgactaagatgg 75006442
Query: 655 tggaggagcatttctactggtga 677
|||||||||||||||||||||||
Sbjct: 75006443 tggaggagcatttctactggtga 75006465
Score = 319 bits (161), Expect = 1e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 1 ccgccgcgggttggggggacgcagatccgggcccaactgcagcttcctcctggcggagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74987334 ccgccgcgggttggggggacgcagatccgggcccaactgcagcttcctcctggcggagct 74987393
Query: 61 gcatttccagccacctccgcagccctgccctcgcgcgccgagccgttccggcggtgccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74987394 gcatttccagccacctccgcagccctgccctcgcgcgccgagccgttccggcggtgccgc 74987453
Query: 121 tggaggcgcggagcccgcccggcgcgcccagccctgcagct 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 74987454 tggaggcgcggagcccgcccggcgcgcccagccctgcagct 74987494
Score = 266 bits (134), Expect = 2e-68
Identities = 137/138 (99%)
Strand = Plus / Plus
Query: 339 aggaaacagcaggtgattgactccaaagatgctattattttgcatcagtttgcaagacct 398
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74994077 aggaaacagcaggagattgactccaaagatgctattattttgcatcagtttgcaagacct 74994136
Query: 399 aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74994137 aacaatggtgtccccagtttatctccgttctgcttgaaaatggaaacttatttaaggatg 74994196
Query: 459 gctgacttaccctatcag 476
||||||||||||||||||
Sbjct: 74994197 gctgacttaccctatcag 74994214
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 221 ttacggtgggatcatggcagggctgggctccgatccctggtggaagaaaaccctttactt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74988029 ttacggtgggatcatggcagggctgggctccgatccctggtggaagaaaaccctttactt 74988088
Query: 281 gaccgggggagctttgctggccgcagctgcgtatctgctccacgaactcctggtcattag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74988089 gaccgggggagctttgctggccgcagctgcgtatctgctccacgaactcctggtcattag 74988148
Query: 341 g 341
|
Sbjct: 74988149 g 74988149
Score = 228 bits (115), Expect = 4e-57
Identities = 118/119 (99%)
Strand = Plus / Minus
Query: 673 ggtgataagaagtacatcatggggcccaagctttccactctcgacgccactgtgtttgga 732
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 74948570 ggtgataagaagtacatcatggggcccaagctttccactctcgatgccactgtgtttgga 74948511
Query: 733 cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74948510 cacttggcacaggcaatgtggaccttacctgggacgagacctgagcggctgataaaagg 74948452
Score = 194 bits (98), Expect = 6e-47
Identities = 104/106 (98%)
Strand = Plus / Minus
Query: 789 aggtgagctgatcaatctggccttgtactgtgagaggataaggaggaaattctggcccga 848
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 74939499 aggtgagctgatcaatctggccatgtactgtgagaggataaggaggaaattctggcccga 74939440
Query: 849 gtggcaccatgatgatgaccataccatctatgagtccgaggagagc 894
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 74939439 gtggcaccatgatgatgacaataccatctatgagtccgaggagagc 74939394
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,527,129
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 13
Length of query: 894
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 873
Effective length of database: 2,808,413,156
Effective search space: 2451744685188
Effective search space used: 2451744685188
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)