Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003173
(1277 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030373.1| eukaryotic translation initiation factor 3 s... 730 0.0
>ref|NP_001030373.1| eukaryotic translation initiation factor 3 subunit L [Bos taurus].
Length = 564
Score = 730 bits (1885), Expect = 0.0
Identities = 362/401 (90%), Positives = 362/401 (90%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 401
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,937,821
Number of extensions: 1225695
Number of successful extensions: 4332
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4321
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,207,134
Effective search space: 4546282880
Effective search space used: 4546282880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003173
(1277 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850423.1| PREDICTED: similar to Eukaryotic translation in... 728 0.0
Alignment gi|XP_863861.1| PREDICTED: similar to Eukaryotic translation in... 728 0.0
Alignment gi|XP_537231.2| PREDICTED: similar to Eukaryotic translation in... 728 0.0
Alignment gi|XP_861272.1| PREDICTED: similar to Eukaryotic translation in... 713 0.0
Alignment gi|XP_860818.1| PREDICTED: similar to Eukaryotic translation in... 713 0.0
Alignment gi|XP_860789.1| PREDICTED: similar to Eukaryotic translation in... 713 0.0
Alignment gi|XP_850135.1| PREDICTED: similar to Eukaryotic translation in... 713 0.0
Alignment gi|XP_861217.1| PREDICTED: similar to Eukaryotic translation in... 704 0.0
Alignment gi|XP_861382.1| PREDICTED: similar to Eukaryotic translation in... 697 0.0
Alignment gi|XP_531741.2| PREDICTED: similar to Eukaryotic translation in... 651 0.0
>ref|XP_850423.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 2 [Canis
familiaris].
Length = 564
Score = 728 bits (1880), Expect = 0.0
Identities = 361/401 (90%), Positives = 361/401 (90%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 401
>ref|XP_863861.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 2 [Canis
familiaris].
Length = 564
Score = 728 bits (1879), Expect = 0.0
Identities = 360/401 (89%), Positives = 361/401 (90%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDA+FLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAIFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 401
>ref|XP_537231.2| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 1 [Canis
familiaris].
Length = 564
Score = 728 bits (1879), Expect = 0.0
Identities = 360/401 (89%), Positives = 361/401 (90%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDA+FLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAIFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 401
>ref|XP_861272.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 6 [Canis
familiaris].
Length = 587
Score = 713 bits (1841), Expect = 0.0
Identities = 360/424 (84%), Positives = 361/424 (85%), Gaps = 23/424 (5%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILN----------- 579
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYIL+
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILSKGISCDSDSHC 180
Query: 580 ------------ADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRS 723
ADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRS
Sbjct: 181 FDSDFSVISHTDADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRS 240
Query: 724 NPKIWXXXXXXXXXXXXXDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXX 903
NPKIW DKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF
Sbjct: 241 NPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGL 300
Query: 904 XXXXXXXXDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFA 1083
DYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFA
Sbjct: 301 LRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFA 360
Query: 1084 NILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDK 1263
NILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDK
Sbjct: 361 NILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDK 420
Query: 1264 MLRM 1275
MLRM
Sbjct: 421 MLRM 424
>ref|XP_860818.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 3 [Canis
familiaris].
Length = 564
Score = 713 bits (1840), Expect = 0.0
Identities = 355/401 (88%), Positives = 357/401 (89%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQ+LAYERQYEQQTYQVI EVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQNLAYERQYEQQTYQVILEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYT+GGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTNGGDPESVAGEYGRHSLYKMLGYFSLVRLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFA LMMRRYQ AIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFACLMMRRYQAAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKML M
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLHM 401
>ref|XP_860789.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 2 [Canis
familiaris].
Length = 564
Score = 713 bits (1840), Expect = 0.0
Identities = 355/401 (88%), Positives = 357/401 (89%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQ+LAYERQYEQQTYQVI EVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQNLAYERQYEQQTYQVILEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYT+GGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTNGGDPESVAGEYGRHSLYKMLGYFSLVRLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFA LMMRRYQ AIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFACLMMRRYQAAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKML M
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLHM 401
>ref|XP_850135.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 1 [Canis
familiaris].
Length = 564
Score = 713 bits (1840), Expect = 0.0
Identities = 355/401 (88%), Positives = 357/401 (89%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQ+LAYERQYEQQTYQVI EVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQNLAYERQYEQQTYQVILEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYT+GGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTNGGDPESVAGEYGRHSLYKMLGYFSLVRLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFA LMMRRYQ AIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFACLMMRRYQAAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKML M
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLHM 401
>ref|XP_861217.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 4 [Canis
familiaris].
Length = 555
Score = 704 bits (1816), Expect = 0.0
Identities = 352/401 (87%), Positives = 352/401 (87%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGN ELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGN---------ELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 171
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 172 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 231
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 232 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 291
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 292 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 351
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 352 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 392
>ref|XP_861382.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 9 [Canis
familiaris].
Length = 559
Score = 697 bits (1800), Expect = 0.0
Identities = 351/401 (87%), Positives = 351/401 (87%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSM I
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSM-----EGPRHI 355
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 356 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 396
>ref|XP_531741.2| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 6 interacting protein isoform 1 [Canis
familiaris].
Length = 533
Score = 651 bits (1680), Expect = 0.0
Identities = 330/401 (82%), Positives = 330/401 (82%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQK LTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQK-------------------------------LTERFFKNTPWPEAEAIAP 89
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 90 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 149
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 150 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 209
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 210 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 269
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 270 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 329
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 330 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 370
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,025,379
Number of extensions: 1265544
Number of successful extensions: 4579
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4541
Number of HSP's successfully gapped: 17
Length of query: 425
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 319
Effective length of database: 15,340,888
Effective search space: 4893743272
Effective search space used: 4893743272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003173
(1277 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057175.1| eukaryotic translation initiation factor 3 subu... 728 0.0
Alignment gi|NP_001229852.1| eukaryotic translation initiation factor 3 s... 600 e-172
>ref|NP_057175.1| eukaryotic translation initiation factor 3 subunit L isoform 1 [Homo
sapiens].
Length = 564
Score = 728 bits (1880), Expect = 0.0
Identities = 361/401 (90%), Positives = 361/401 (90%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPSDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 401
>ref|NP_001229852.1| eukaryotic translation initiation factor 3 subunit L isoform 2 [Homo
sapiens].
Length = 516
Score = 600 bits (1547), Expect = e-172
Identities = 313/401 (78%), Positives = 313/401 (78%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPSDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVS
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVS----------------------------------- 145
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
FQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNI
Sbjct: 146 -------------FQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 192
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 193 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 252
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 253 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 312
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 313 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 353
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,045,740
Number of extensions: 1237296
Number of successful extensions: 4329
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4311
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,835,944
Effective search space: 4747502080
Effective search space used: 4747502080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003173
(1277 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660121.2| eukaryotic translation initiation factor 3 subu... 724 0.0
>ref|NP_660121.2| eukaryotic translation initiation factor 3 subunit L [Mus musculus].
Length = 564
Score = 724 bits (1869), Expect = 0.0
Identities = 358/401 (89%), Positives = 360/401 (89%)
Frame = +1
Query: 73 MSYPADDYESETXXXXXXXXXXXXMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 252
MSYPADDYESE MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1 MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
Query: 253 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAP 432
KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAE IAP
Sbjct: 61 KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
Query: 433 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 612
QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
Query: 613 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNI 792
QWLWDIIDEFIYQFQSFSQYRCKTAKKSE E+DFLRSNPK+W DKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEGEMDFLRSNPKVWNVHSVLNVLHSLVDKSNI 240
Query: 793 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELN 972
NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
Query: 973 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 1152
KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
Query: 1153 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 401
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,923,239
Number of extensions: 1034606
Number of successful extensions: 3767
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3760
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 321
Effective length of database: 12,493,815
Effective search space: 4010514615
Effective search space used: 4010514615
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003173
(1277 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126104.2| PREDICTED: eukaryotic translation initiation... 508 e-144
Alignment gi|XP_003355395.1| PREDICTED: eukaryotic translation initiation... 201 6e-52
Alignment gi|XP_003355394.1| PREDICTED: eukaryotic translation initiation... 144 1e-34
>ref|XP_003126104.2| PREDICTED: eukaryotic translation initiation factor 3 subunit L-like
[Sus scrofa].
Length = 455
Score = 508 bits (1307), Expect = e-144
Identities = 251/277 (90%), Positives = 251/277 (90%)
Frame = +1
Query: 445 DAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLW 624
DAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLW
Sbjct: 16 DAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLW 75
Query: 625 DIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWXXXXXXXXXXXXXDKSNINRQL 804
DIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIW DKSNINRQL
Sbjct: 76 DIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQL 135
Query: 805 EVYTSGGDPESVAGEYGRHSLYKMLGYFXXXXXXXXXXXXXDYYQAIKVLENIELNKKSM 984
EVYTSGGDPESVAGEYGRHSLYKMLGYF DYYQAIKVLENIELNKKSM
Sbjct: 136 EVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSM 195
Query: 985 YSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQN 1164
YSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQN
Sbjct: 196 YSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQN 255
Query: 1165 EQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 1275
EQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM
Sbjct: 256 EQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRM 292
>ref|XP_003355395.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
L-like [Sus scrofa].
Length = 132
Score = 201 bits (512), Expect = 6e-52
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +1
Query: 154 GDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQK 333
GDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQK
Sbjct: 21 GDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQK 80
Query: 334 VYEIQDIYENSWTKLTERFFKNTPWPEAETIAPQVGN 444
VYEIQDIYENSWTKLTERFFKNTPWPEAETIAPQVGN
Sbjct: 81 VYEIQDIYENSWTKLTERFFKNTPWPEAETIAPQVGN 117
>ref|XP_003355394.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
L-like [Sus scrofa].
Length = 114
Score = 144 bits (362), Expect = 1e-34
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = +1
Query: 151 TGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQ 330
+GDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQ
Sbjct: 27 SGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQ 86
Query: 331 KVYEIQDIYENSW 369
KVYEIQDIYEN +
Sbjct: 87 KVYEIQDIYENRY 99
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,956,997
Number of extensions: 787385
Number of successful extensions: 2747
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2737
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 323
Effective length of database: 8,804,438
Effective search space: 2843833474
Effective search space used: 2843833474
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003173
(1277 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 406 e-110
>Sscrofa_Chr05
|| Length = 111506441
Score = 406 bits (205), Expect = e-110
Identities = 211/213 (99%)
Strand = Plus / Minus
Query: 153 aggcgatccgaagcaggatctggcttatgaacgtcagtatgagcagcagacctatcaggt 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7489969 aggcgatccgaagcaggatctggcttatgaacgtcagtatgagcagcagacctatcaggt 7489910
Query: 213 gattcccgaggtgatcaaaaacttcatccagtatttccacaaaaccgtgtcggacttgat 272
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7489909 gattcccgaggtgatcaaaaacttcatccagtatttccacaaaactgtgtcggacttgat 7489850
Query: 273 tgaccagaaggtgtatgaactacaggccagtcgcgtgtccagcgatgtcattgaccagaa 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7489849 tgaccagaaggtgtatgaactacaggccagtcgcgtgtccagcgatgtcattgaccaaaa 7489790
Query: 333 ggtgtatgagatccaggacatctatgagaacag 365
|||||||||||||||||||||||||||||||||
Sbjct: 7489789 ggtgtatgagatccaggacatctatgagaacag 7489757
Score = 347 bits (175), Expect = 9e-93
Identities = 178/179 (99%)
Strand = Plus / Minus
Query: 649 cagtttcagtcgttcagtcagtaccgctgcaagaccgccaagaagtcggaggaggagatt 708
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7476417 cagtttcagtcgttcagtcagtaccgctgcaagaccgccaagaagtcagaggaggagatt 7476358
Query: 709 gacttccttcgttccaatcccaaaatctggaacgtccacagtgtcctcaacgtccttcac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7476357 gacttccttcgttccaatcccaaaatctggaacgtccacagtgtcctcaacgtccttcac 7476298
Query: 769 tccctagtggacaagtccaacatcaaccggcagctggaggtgtacacgagcggaggtga 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7476297 tccctagtggacaagtccaacatcaaccggcagctggaggtgtacacgagcggaggtga 7476239
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 977 agagcatgtattcccgggtgcccgagtgccaggtgaccacttactactacgtcgggtttg 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7473055 agagcatgtattcccgggtgcccgagtgccaggtgaccacttactactacgtcgggtttg 7472996
Query: 1037 cgtatttgatgatgcgtcgctaccaggatgccatccgggtctttgccaacatcctcctct 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7472995 cgtatttgatgatgcgtcgctaccaggatgccatccgggtctttgccaacatcctcctct 7472936
Query: 1097 acatccagaggaccaagagcatgttccagaggaccacgtacaagtacgagatg 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7472935 acatccagaggaccaagagcatgttccagaggaccacgtacaagtacgagatg 7472883
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Minus
Query: 822 aggtgaccctgagagtgtggctggggaatatgggcggcactccctctacaagatgctcgg 881
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7474219 aggtgaccctgagagtgtggctggggagtatgggcggcactccctctacaagatgctcgg 7474160
Query: 882 ctacttcagcctggtgggccttctgcgtctgcactccctgttgggggattactaccaggc 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7474159 ctacttcagcctggtgggccttctgcgtctgcactccctgttgggggattactaccaggc 7474100
Query: 942 catcaaggtgctggagaacatcgaactcaacaagaag 978
|||||||||||||||||||||||||||||||||||||
Sbjct: 7474099 catcaaggtgctggagaacatcgaactcaacaagaag 7474063
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1149 gattaacaagcagaacgagcagatgcacgcgctgctggccatcgccctcaccatgtaccc 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7471943 gattaacaagcagaacgagcagatgcacgcgctgctggccatcgccctcaccatgtaccc 7471884
Query: 1209 catgcgcatcgatgagagcattcacctccagctgcgggagaagtacggggacaagatgct 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7471883 catgcgcatcgatgagagcattcacctccagctgcgggagaagtacggggacaagatgct 7471824
Query: 1269 gcgcatgca 1277
|||||||||
Sbjct: 7471823 gcgcatgca 7471815
Score = 184 bits (93), Expect = 8e-44
Identities = 102/105 (97%)
Strand = Plus / Minus
Query: 1 cttccggcctccagacgcaggcgaggtgcgctttttcctctctttcctcctgggcttcgg 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 7492101 cttccggcgtccagacgcaggcgaggtgcgctttttccgctctttcctcctgggcctcgg 7492042
Query: 61 agcgccgcagccatgtcttatcccgctgatgattatgagtcggag 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7492041 agcgccgcagccatgtcttatcccgctgatgattatgagtcggag 7491997
Score = 157 bits (79), Expect = 2e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 363 cagctggaccaagttgactgaaagattcttcaagaataccccttggcctgaggctgaaac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7488347 cagctggaccaagttgactgaaagattcttcaagaataccccttggcctgaggctgaaac 7488288
Query: 423 cattgctccgcaggttggcaacg 445
||||||||| |||||||||||||
Sbjct: 7488287 cattgctccacaggttggcaacg 7488265
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 578 atgctgatggtcctgctccgctcgaactacccaaccagtggctctgggacatcatagatg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7480983 atgctgatggtcctgctccgctcgaactacccaaccagtggctctgggacatcatagatg 7480924
Query: 638 agttcatctaccag 651
||||||||||||||
Sbjct: 7480923 agttcatctaccag 7480910
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 508 gggggaccctccttggagcagaggtttgaatcctattacaactactgcaatctcttcaac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7481245 gggggaccctccttggagcagaggtttgaatcctattacaactactgcaatctcttcaac 7481186
Query: 568 tacattctca 577
||||||||||
Sbjct: 7481185 tacattctca 7481176
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 445 gatgctgttttcctgattttgtacaaagaattatactacaggcacatttatgccaaagtc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7483727 gatgctgttttcctgattttgtacaaagaattatactacaggcacatttatgccaaagtc 7483668
Query: 505 agcg 508
||||
Sbjct: 7483667 agcg 7483664
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 104 agactgcttatgatccctatgcttacccgggcgactatgatatgcacacagg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7491459 agactgcttatgatccctatgcttacccgggcgactatgatatgcacacagg 7491408
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,503,983
Number of extensions: 157
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 11
Length of query: 1277
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1256
Effective length of database: 2,808,413,156
Effective search space: 3527366923936
Effective search space used: 3527366923936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)