Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003187
(1215 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019711.1| ras-related protein Rab-13 [Bos taurus]. 388 e-108
Alignment gi|NP_001069785.1| ras-related protein Rab-8B [Bos taurus]. 268 9e-72
Alignment gi|NP_001098951.1| ras-related protein Rab-8A [Bos taurus]. 261 1e-69
Alignment gi|NP_001094758.1| ras-related protein Rab-10 [Bos taurus]. 252 5e-67
Alignment gi|NP_001069701.1| ras-related protein Rab-1B [Bos taurus]. 214 1e-55
Alignment gi|NP_001040003.1| ras-related protein Rab-15 [Bos taurus]. 203 3e-52
Alignment gi|NP_001091596.1| ras-related protein Rab-35 [Bos taurus]. 200 2e-51
Alignment gi|NP_001039674.1| ras-related protein Rab-26 [Bos taurus]. 193 3e-49
Alignment gi|NP_001040071.1| ras-related protein Rab-3C [Bos taurus]. 189 3e-48
Alignment gi|NP_776871.2| ras-related protein Rab-3A [Bos taurus]. 187 2e-47
>ref|NP_001019711.1| ras-related protein Rab-13 [Bos taurus].
Length = 203
Score = 388 bits (997), Expect = e-108
Identities = 194/198 (97%), Positives = 196/198 (98%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDF+IRTVDIEGKKIKLQVWDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRL N+NKP
Sbjct: 125 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKP 184
Query: 692 HSTDLKTCDKKNTNKCSL 745
STDLKTCDKKNTNKCSL
Sbjct: 185 PSTDLKTCDKKNTNKCSL 202
>ref|NP_001069785.1| ras-related protein Rab-8B [Bos taurus].
Length = 207
Score = 268 bits (684), Expect = 9e-72
Identities = 127/178 (71%), Positives = 161/178 (90%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTCL+ RF+ED FN T+ISTIGIDFKIRT++++GKKIKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+AS+ VER++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M KR+V KE+ +KLA ++GI+F E SAKSSMNV+EAF +LARDI+ K R++ +SN
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKL-NRKMNDSN 181
>ref|NP_001098951.1| ras-related protein Rab-8A [Bos taurus].
Length = 207
Score = 261 bits (666), Expect = 1e-69
Identities = 122/186 (65%), Positives = 163/186 (87%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTC++ RF+ED FN+T+ISTIGIDFKIRT++++GK+IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+ASA VE+++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ KR+V KE+ +KLA ++GI+F ETSAK+++NV+ AF +LARDI K + GNS +
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQG 184
Query: 692 HSTDLK 709
+ +K
Sbjct: 185 SNQGVK 190
>ref|NP_001094758.1| ras-related protein Rab-10 [Bos taurus].
Length = 200
Score = 252 bits (643), Expect = 5e-67
Identities = 119/178 (66%), Positives = 153/178 (85%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LFKLLLIGDSGVGKTC++ RF++D FN T+ISTIGIDFKI+TV+++GKKIKLQ+WDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF TITT+YYRGAMGI+LVYDIT+ KSFENI W+++I E+A+ VER+LLGNKCD
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M+ KR V K + +++AREHGIRFFETSAK+++N+++AF +LA DIL K+ + + N
Sbjct: 126 MDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_001069701.1| ras-related protein Rab-1B [Bos taurus].
Length = 201
Score = 214 bits (545), Expect = 1e-55
Identities = 98/181 (54%), Positives = 138/181 (76%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++S+ N++ W++ I AS V +LL+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +P
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
Query: 692 H 694
+
Sbjct: 185 N 185
>ref|NP_001040003.1| ras-related protein Rab-15 [Bos taurus].
Length = 212
Score = 203 bits (516), Expect = 3e-52
Identities = 89/166 (53%), Positives = 134/166 (80%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LF+LLLIGDSGVGKTCL+ RF ++ F++++ISTIG+DFK++T++++G K+++Q+WDT
Sbjct: 5 YDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TIT YYR A GI LVYDI+ E+S+++I W+ + E A GV+++L+GNK D
Sbjct: 65 AGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL 649
E KR+V +EQ +LARE+G+ F+ETSA +++N+ E+F+ L +L
Sbjct: 125 EEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVL 170
>ref|NP_001091596.1| ras-related protein Rab-35 [Bos taurus].
Length = 201
Score = 200 bits (508), Expect = 2e-51
Identities = 96/195 (49%), Positives = 140/195 (71%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLL+IGDSGVGK+ L++RFA++ F+ +YI+TIG+DFKIRTV+I G+K+KLQ+WDT
Sbjct: 5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT+ YYRG G+I+VYD+T +SF N++ W+ I +N V R+L+GNK D
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 123
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
++ V+ E A K A + GI+ FETSAK ++NV+E F+ + +++L++ L +
Sbjct: 124 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT-ELVLRAKKDNLAKQQQQ 182
Query: 692 HSTDLKTCDKKNTNK 736
D+ K + K
Sbjct: 183 QQNDVVKLTKNSKRK 197
>ref|NP_001039674.1| ras-related protein Rab-26 [Bos taurus].
Length = 256
Score = 193 bits (490), Expect = 3e-49
Identities = 87/166 (52%), Positives = 132/166 (79%), Gaps = 1/166 (0%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNF-NNTYISTIGIDFKIRTVDIEGKKIKLQVWD 328
YD FK++L+GDSGVGKTCL++RF + F T+IST+GIDF+ + VD++G K+KLQ+WD
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWD 119
Query: 329 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKC 508
TAGQERF+++T AYYR A ++L+YD+T++ SF++IQ W+ I+E+A V +LLGNK
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKV 179
Query: 509 DMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 646
D +R V++E A+KLA+++G+ F ETSAK+ +NVD AF+++A+++
Sbjct: 180 DSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225
>ref|NP_001040071.1| ras-related protein Rab-3C [Bos taurus].
Length = 227
Score = 189 bits (481), Expect = 3e-48
Identities = 86/161 (53%), Positives = 121/161 (75%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FKLL+IG+S VGKT + R+A+D+F + ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + +L+GNKCD
Sbjct: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 634
ME +R + E+ L + G FFETSAK ++NV + F L
Sbjct: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERL 187
>ref|NP_776871.2| ras-related protein Rab-3A [Bos taurus].
Length = 220
Score = 187 bits (475), Expect = 2e-47
Identities = 86/161 (53%), Positives = 120/161 (74%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FK+L+IG+S VGKT + R+A+D+F ++ST+GIDFK++T+ K+IKLQ+WDT
Sbjct: 19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 78
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + LL+GNKCD
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 138
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 634
ME +R V E+ +LA G FFE SAK ++NV + F L
Sbjct: 139 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 179
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,431,186
Number of extensions: 1291069
Number of successful extensions: 5437
Number of sequences better than 1.0e-05: 186
Number of HSP's gapped: 5225
Number of HSP's successfully gapped: 186
Length of query: 405
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,207,134
Effective search space: 4262140200
Effective search space used: 4262140200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003187
(1215 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-1... 375 e-104
Alignment gi|XP_546532.2| PREDICTED: similar to Ras-related protein Rab-1... 306 3e-83
Alignment gi|NP_001003152.1| ras-related protein Rab-8A [Canis lupus fami... 261 1e-69
Alignment gi|XP_855569.1| PREDICTED: RAB8A, member RAS oncogene family [C... 261 1e-69
Alignment gi|NP_001003277.2| ras-related protein Rab-10 [Canis lupus fami... 252 6e-67
Alignment gi|XP_855590.1| PREDICTED: rab10 GTP-binding protein [Canis fam... 252 6e-67
Alignment gi|NP_001003153.1| ras-related protein Rab-1A [Canis lupus fami... 218 7e-57
Alignment gi|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogen... 214 1e-55
Alignment gi|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogen... 214 1e-55
Alignment gi|XP_853228.1| PREDICTED: similar to RAB8B, member RAS oncogen... 206 5e-53
>ref|XP_855128.1| PREDICTED: similar to Ras-related protein Rab-13 [Canis
familiaris].
Length = 248
Score = 375 bits (962), Expect = e-104
Identities = 188/199 (94%), Positives = 192/199 (96%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLLLIGDSGVGKTCLIIRFAED+FNNTYISTIGIDFKIRTVD+EGKKIKLQVWDT
Sbjct: 50 YDHLFKLLLIGDSGVGKTCLIIRFAEDSFNNTYISTIGIDFKIRTVDVEGKKIKLQVWDT 109
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD
Sbjct: 110 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 169
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
MEAKRKVQKEQA KLAREHGIRFFETSAKSS NVDEAFSSLARDILLKSGGRR GNS+K
Sbjct: 170 MEAKRKVQKEQAIKLAREHGIRFFETSAKSSTNVDEAFSSLARDILLKSGGRRSGNSHKA 229
Query: 692 HSTDLKTCDKKNTNKCSLG 748
TDLK CDKKNT+KCSLG
Sbjct: 230 PGTDLKPCDKKNTSKCSLG 248
>ref|XP_546532.2| PREDICTED: similar to Ras-related protein Rab-13 [Canis
familiaris].
Length = 282
Score = 306 bits (783), Expect = 3e-83
Identities = 158/179 (88%), Positives = 161/179 (89%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLLLIGDSG+ KTCLII FAED+FNNTYISTIGIDFKI TVDI KKIKLQ+WDT
Sbjct: 69 YDHLFKLLLIGDSGMRKTCLIICFAEDSFNNTYISTIGIDFKICTVDIGRKKIKLQIWDT 128
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQE FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD
Sbjct: 129 AGQEGFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 188
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNK 688
MEAKRKVQKEQ KLAREHGIRFFETSAKSS NVDEAFSSLA DILLK R N K
Sbjct: 189 MEAKRKVQKEQVIKLAREHGIRFFETSAKSSTNVDEAFSSLAWDILLKGKEEREANEQK 247
>ref|NP_001003152.1| ras-related protein Rab-8A [Canis lupus familiaris].
Length = 207
Score = 261 bits (666), Expect = 1e-69
Identities = 122/186 (65%), Positives = 163/186 (87%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTC++ RF+ED FN+T+ISTIGIDFKIRT++++GK+IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+ASA VE+++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ KR+V KE+ +KLA ++GI+F ETSAK+++NV+ AF +LARDI K + GNS +
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 692 HSTDLK 709
+ +K
Sbjct: 185 SNQGVK 190
>ref|XP_855569.1| PREDICTED: RAB8A, member RAS oncogene family [Canis familiaris].
Length = 207
Score = 261 bits (666), Expect = 1e-69
Identities = 122/186 (65%), Positives = 163/186 (87%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTC++ RF+ED FN+T+ISTIGIDFKIRT++++GK+IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+ASA VE+++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ KR+V KE+ +KLA ++GI+F ETSAK+++NV+ AF +LARDI K + GNS +
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 692 HSTDLK 709
+ +K
Sbjct: 185 SNQGVK 190
>ref|NP_001003277.2| ras-related protein Rab-10 [Canis lupus familiaris].
Length = 200
Score = 252 bits (643), Expect = 6e-67
Identities = 119/178 (66%), Positives = 153/178 (85%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LFKLLLIGDSGVGKTC++ RF++D FN T+ISTIGIDFKI+TV+++GKKIKLQ+WDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF TITT+YYRGAMGI+LVYDIT+ KSFENI W+++I E+A+ VER+LLGNKCD
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M+ KR V K + +++AREHGIRFFETSAK+++N+++AF +LA DIL K+ + + N
Sbjct: 126 MDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|XP_855590.1| PREDICTED: rab10 GTP-binding protein [Canis familiaris].
Length = 200
Score = 252 bits (643), Expect = 6e-67
Identities = 119/178 (66%), Positives = 153/178 (85%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LFKLLLIGDSGVGKTC++ RF++D FN T+ISTIGIDFKI+TV+++GKKIKLQ+WDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF TITT+YYRGAMGI+LVYDIT+ KSFENI W+++I E+A+ VER+LLGNKCD
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M+ KR V K + +++AREHGIRFFETSAK+++N+++AF +LA DIL K+ + + N
Sbjct: 126 MDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_001003153.1| ras-related protein Rab-1A [Canis lupus familiaris].
Length = 205
Score = 218 bits (556), Expect = 7e-57
Identities = 104/197 (52%), Positives = 146/197 (74%), Gaps = 1/197 (0%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W++ I AS V +LL+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG-GRRLGNSNK 688
+ K+ V A + A GI F ETSAK++ NV+++F ++A +I + G G G + K
Sbjct: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
Query: 689 PHSTDLKTCDKKNTNKC 739
+ T K++ C
Sbjct: 188 SNVKIQSTPVKQSGGGC 204
>ref|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 5
[Canis familiaris].
Length = 201
Score = 214 bits (545), Expect = 1e-55
Identities = 98/181 (54%), Positives = 138/181 (76%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++S+ N++ W++ I AS V +LL+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +P
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
Query: 692 H 694
+
Sbjct: 185 N 185
>ref|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 201
Score = 214 bits (545), Expect = 1e-55
Identities = 98/181 (54%), Positives = 138/181 (76%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++S+ N++ W++ I AS V +LL+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +P
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
Query: 692 H 694
+
Sbjct: 185 N 185
>ref|XP_853228.1| PREDICTED: similar to RAB8B, member RAS oncogene family [Canis
familiaris].
Length = 195
Score = 206 bits (523), Expect = 5e-53
Identities = 98/145 (67%), Positives = 128/145 (88%)
Frame = +2
Query: 263 GIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN 442
GIDFKIRT++++GKKIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+N
Sbjct: 30 GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 89
Query: 443 WMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEA 622
W+++I+E+AS+ VER++LGNKCDM KR+V KE+ +KLA ++GI+F ETSAKSS NV+EA
Sbjct: 90 WIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEA 149
Query: 623 FSSLARDILLKSGGRRLGNSNKPHS 697
F +LARDI+ K R++ +SN S
Sbjct: 150 FFTLARDIMTKL-NRKMNDSNSSGS 173
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,445,993
Number of extensions: 1169369
Number of successful extensions: 5361
Number of sequences better than 1.0e-05: 176
Number of HSP's gapped: 5203
Number of HSP's successfully gapped: 178
Length of query: 405
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 300
Effective length of database: 15,374,224
Effective search space: 4612267200
Effective search space used: 4612267200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003187
(1215 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002861.1| ras-related protein Rab-13 [Homo sapiens]. 392 e-109
Alignment gi|NP_057614.1| ras-related protein Rab-8B [Homo sapiens]. 267 1e-71
Alignment gi|NP_005361.2| ras-related protein Rab-8A [Homo sapiens]. 261 1e-69
Alignment gi|NP_057215.3| ras-related protein Rab-10 [Homo sapiens]. 252 6e-67
Alignment gi|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapi... 218 7e-57
Alignment gi|NP_112243.1| ras-related protein Rab-1B [Homo sapiens]. 214 1e-55
Alignment gi|NP_006852.1| ras-related protein Rab-35 isoform 1 [Homo sapi... 200 3e-51
Alignment gi|NP_055168.2| ras-related protein Rab-26 [Homo sapiens]. 191 2e-48
Alignment gi|NP_612462.1| ras-related protein Rab-3C [Homo sapiens]. 189 3e-48
Alignment gi|NP_002857.1| ras-related protein Rab-3A [Homo sapiens]. 187 2e-47
>ref|NP_002861.1| ras-related protein Rab-13 [Homo sapiens].
Length = 203
Score = 392 bits (1007), Expect = e-109
Identities = 196/199 (98%), Positives = 196/199 (98%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRR GN NKP
Sbjct: 125 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKP 184
Query: 692 HSTDLKTCDKKNTNKCSLG 748
STDLKTCDKKNTNKCSLG
Sbjct: 185 PSTDLKTCDKKNTNKCSLG 203
>ref|NP_057614.1| ras-related protein Rab-8B [Homo sapiens].
Length = 207
Score = 267 bits (683), Expect = 1e-71
Identities = 127/178 (71%), Positives = 161/178 (90%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTCL+ RF+ED FN T+ISTIGIDFKIRT++++GKKIKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+AS+ VER++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M KR+V KE+ +KLA ++GI+F ETSAKSS NV+EAF +LARDI+ K R++ +SN
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL-NRKMNDSN 181
>ref|NP_005361.2| ras-related protein Rab-8A [Homo sapiens].
Length = 207
Score = 261 bits (666), Expect = 1e-69
Identities = 122/186 (65%), Positives = 163/186 (87%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTC++ RF+ED FN+T+ISTIGIDFKIRT++++GK+IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+ASA VE+++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ KR+V KE+ +KLA ++GI+F ETSAK+++NV+ AF +LARDI K + GNS +
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 692 HSTDLK 709
+ +K
Sbjct: 185 SNQGVK 190
>ref|NP_057215.3| ras-related protein Rab-10 [Homo sapiens].
Length = 200
Score = 252 bits (643), Expect = 6e-67
Identities = 119/178 (66%), Positives = 153/178 (85%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LFKLLLIGDSGVGKTC++ RF++D FN T+ISTIGIDFKI+TV+++GKKIKLQ+WDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF TITT+YYRGAMGI+LVYDIT+ KSFENI W+++I E+A+ VER+LLGNKCD
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M+ KR V K + +++AREHGIRFFETSAK+++N+++AF +LA DIL K+ + + N
Sbjct: 126 MDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapiens].
Length = 205
Score = 218 bits (556), Expect = 7e-57
Identities = 104/197 (52%), Positives = 146/197 (74%), Gaps = 1/197 (0%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W++ I AS V +LL+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG-GRRLGNSNK 688
+ K+ V A + A GI F ETSAK++ NV+++F ++A +I + G G G + K
Sbjct: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
Query: 689 PHSTDLKTCDKKNTNKC 739
+ T K++ C
Sbjct: 188 SNVKIQSTPVKQSGGGC 204
>ref|NP_112243.1| ras-related protein Rab-1B [Homo sapiens].
Length = 201
Score = 214 bits (545), Expect = 1e-55
Identities = 98/181 (54%), Positives = 138/181 (76%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++S+ N++ W++ I AS V +LL+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +P
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
Query: 692 H 694
+
Sbjct: 185 N 185
>ref|NP_006852.1| ras-related protein Rab-35 isoform 1 [Homo sapiens].
Length = 201
Score = 200 bits (508), Expect = 3e-51
Identities = 96/195 (49%), Positives = 140/195 (71%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLL+IGDSGVGK+ L++RFA++ F+ +YI+TIG+DFKIRTV+I G+K+KLQ+WDT
Sbjct: 5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT+ YYRG G+I+VYD+T +SF N++ W+ I +N V R+L+GNK D
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 123
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
++ V+ E A K A + GI+ FETSAK ++NV+E F+ + +++L++ L +
Sbjct: 124 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT-ELVLRAKKDNLAKQQQQ 182
Query: 692 HSTDLKTCDKKNTNK 736
D+ K + K
Sbjct: 183 QQNDVVKLTKNSKRK 197
>ref|NP_055168.2| ras-related protein Rab-26 [Homo sapiens].
Length = 256
Score = 191 bits (484), Expect = 2e-48
Identities = 88/170 (51%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNF-NNTYISTIGIDFKIRTVDIEGKKIKLQVWD 328
YD FK++L+GDSGVGKTCL++RF + F T+IST+GIDF+ + +D++G K+KLQ+WD
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 119
Query: 329 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKC 508
TAGQERF+++T AYYR A ++L+YD+T++ SF+NIQ W+ I E A V +LLGNK
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 179
Query: 509 DMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 658
D +R V++E +KLA+E+G+ F ETSAK+ +NVD AF+++A+++ +S
Sbjct: 180 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRS 229
>ref|NP_612462.1| ras-related protein Rab-3C [Homo sapiens].
Length = 227
Score = 189 bits (481), Expect = 3e-48
Identities = 86/161 (53%), Positives = 121/161 (75%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FKLL+IG+S VGKT + R+A+D+F + ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + +L+GNKCD
Sbjct: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 634
ME +R + E+ L + G FFETSAK ++NV + F L
Sbjct: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERL 187
>ref|NP_002857.1| ras-related protein Rab-3A [Homo sapiens].
Length = 220
Score = 187 bits (475), Expect = 2e-47
Identities = 86/161 (53%), Positives = 120/161 (74%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FK+L+IG+S VGKT + R+A+D+F ++ST+GIDFK++T+ K+IKLQ+WDT
Sbjct: 19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 78
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + LL+GNKCD
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 138
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 634
ME +R V E+ +LA G FFE SAK ++NV + F L
Sbjct: 139 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 179
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,474,083
Number of extensions: 1135651
Number of successful extensions: 5382
Number of sequences better than 1.0e-05: 220
Number of HSP's gapped: 5164
Number of HSP's successfully gapped: 221
Length of query: 405
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,835,944
Effective search space: 4450783200
Effective search space used: 4450783200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003187
(1215 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080953.1| ras-related protein Rab-13 [Mus musculus]. 358 6e-99
Alignment gi|NP_775589.1| ras-related protein Rab-8B [Mus musculus]. 267 1e-71
Alignment gi|NP_075615.2| ras-related protein Rab-8A [Mus musculus]. 263 2e-70
Alignment gi|NP_057885.1| ras-related protein Rab-10 [Mus musculus]. 252 5e-67
Alignment gi|NP_033022.1| ras-related protein Rab-1A [Mus musculus]. 218 6e-57
Alignment gi|NP_083852.1| ras-related protein Rab-1B [Mus musculus]. 214 1e-55
Alignment gi|NP_598811.3| ras-related protein Rab-15 [Mus musculus]. 202 6e-52
Alignment gi|NP_937806.1| ras-related protein Rab-35 [Mus musculus]. 200 2e-51
Alignment gi|NP_796349.1| ras-related protein Rab-26 [Mus musculus]. 191 8e-49
Alignment gi|NP_076341.1| ras-related protein Rab-3C [Mus musculus]. 190 2e-48
>ref|NP_080953.1| ras-related protein Rab-13 [Mus musculus].
Length = 202
Score = 358 bits (918), Expect = 6e-99
Identities = 181/199 (90%), Positives = 190/199 (95%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLLLIGDSGVGKTCLIIRFAEDNFN+TYISTIGIDFKIRTVDIEGK+IKLQVWDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
MEAKR+VQ+EQA+KLAREH IRFFETSAKSS+NVDEAFSSLARDILLK+GGRR G ++KP
Sbjct: 125 MEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKP 184
Query: 692 HSTDLKTCDKKNTNKCSLG 748
ST LKT DKK NKC LG
Sbjct: 185 SSTGLKTSDKKK-NKCLLG 202
>ref|NP_775589.1| ras-related protein Rab-8B [Mus musculus].
Length = 207
Score = 267 bits (683), Expect = 1e-71
Identities = 127/178 (71%), Positives = 161/178 (90%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTCL+ RF+ED FN T+ISTIGIDFKIRT++++GKKIKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+AS+ VER++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M KR+V KE+ +KLA ++GI+F ETSAKSS NV+EAF +LARDI+ K R++ +SN
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL-NRKMNDSN 181
>ref|NP_075615.2| ras-related protein Rab-8A [Mus musculus].
Length = 207
Score = 263 bits (673), Expect = 2e-70
Identities = 127/202 (62%), Positives = 169/202 (83%), Gaps = 4/202 (1%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTC++ RF+ED FN+T+ISTIGIDFKIRT++++GK+IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+ASA VE+++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNS--N 685
+ KR+V KE+ +KLA ++GI+F ETSAK+++NV+ AF +LARDI K + GNS
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 686 KPHSTDLKTCDKKNTN--KCSL 745
H + +K T+ +CSL
Sbjct: 185 SSHGVKITVEQQKRTSFFRCSL 206
>ref|NP_057885.1| ras-related protein Rab-10 [Mus musculus].
Length = 200
Score = 252 bits (643), Expect = 5e-67
Identities = 119/178 (66%), Positives = 153/178 (85%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LFKLLLIGDSGVGKTC++ RF++D FN T+ISTIGIDFKI+TV+++GKKIKLQ+WDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF TITT+YYRGAMGI+LVYDIT+ KSFENI W+++I E+A+ VER+LLGNKCD
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M+ KR V K + +++AREHGIRFFETSAK+++N+++AF +LA DIL K+ + + N
Sbjct: 126 MDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_033022.1| ras-related protein Rab-1A [Mus musculus].
Length = 205
Score = 218 bits (556), Expect = 6e-57
Identities = 104/197 (52%), Positives = 146/197 (74%), Gaps = 1/197 (0%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W++ I AS V +LL+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG-GRRLGNSNK 688
+ K+ V A + A GI F ETSAK++ NV+++F ++A +I + G G G + K
Sbjct: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
Query: 689 PHSTDLKTCDKKNTNKC 739
+ T K++ C
Sbjct: 188 SNVKIQSTPVKQSGGGC 204
>ref|NP_083852.1| ras-related protein Rab-1B [Mus musculus].
Length = 201
Score = 214 bits (544), Expect = 1e-55
Identities = 97/181 (53%), Positives = 138/181 (76%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD++S+ N++ W++ I AS V +LL+GNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ K+ V A + A G+ F ETSAK++ NV++AF ++A +I + G +P
Sbjct: 125 LTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
Query: 692 H 694
+
Sbjct: 185 N 185
>ref|NP_598811.3| ras-related protein Rab-15 [Mus musculus].
Length = 212
Score = 202 bits (513), Expect = 6e-52
Identities = 88/166 (53%), Positives = 134/166 (80%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LF+LLLIGDSGVGKTCL+ RF ++ F++++ISTIG+DFK++T++++G K+++Q+WDT
Sbjct: 5 YDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TIT YYR A GI LVYDI+ E+S+++I W+ + E A GV+++L+GNK D
Sbjct: 65 AGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL 649
E KR+V +EQ +LA+E+G+ F+ETSA +++N+ E+F+ L +L
Sbjct: 125 EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVL 170
>ref|NP_937806.1| ras-related protein Rab-35 [Mus musculus].
Length = 201
Score = 200 bits (508), Expect = 2e-51
Identities = 96/195 (49%), Positives = 140/195 (71%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLL+IGDSGVGK+ L++RFA++ F+ +YI+TIG+DFKIRTV+I G+K+KLQ+WDT
Sbjct: 5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT+ YYRG G+I+VYD+T +SF N++ W+ I +N V R+L+GNK D
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 123
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
++ V+ E A K A + GI+ FETSAK ++NV+E F+ + +++L++ L +
Sbjct: 124 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT-ELVLRAKKDNLAKQQQQ 182
Query: 692 HSTDLKTCDKKNTNK 736
D+ K + K
Sbjct: 183 QQNDVVKLTKNSKRK 197
>ref|NP_796349.1| ras-related protein Rab-26 [Mus musculus].
Length = 260
Score = 191 bits (486), Expect = 8e-49
Identities = 88/170 (51%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNF-NNTYISTIGIDFKIRTVDIEGKKIKLQVWD 328
YD FK++L+GDSGVGKTCL++RF + F T+IST+GIDF+ + +D++G K+KLQ+WD
Sbjct: 64 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWD 123
Query: 329 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKC 508
TAGQERF+++T AYYR A ++L+YDIT++ SF+NIQ W+ I+E A V +LLGNK
Sbjct: 124 TAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKV 183
Query: 509 DMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 658
D R V++E +KLA+E+G+ F ETSA++ +NVD AF+++A+++ +S
Sbjct: 184 DSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRS 233
>ref|NP_076341.1| ras-related protein Rab-3C [Mus musculus].
Length = 227
Score = 190 bits (483), Expect = 2e-48
Identities = 87/161 (54%), Positives = 121/161 (75%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FKLL+IG+S VGKT + R+A+D+F + ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + +L GNKCD
Sbjct: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCD 146
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 634
ME +R V E+ +L + G FFETSAK ++NV + F L
Sbjct: 147 MEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERL 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,836,494
Number of extensions: 951920
Number of successful extensions: 4721
Number of sequences better than 1.0e-05: 162
Number of HSP's gapped: 4520
Number of HSP's successfully gapped: 162
Length of query: 405
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 301
Effective length of database: 12,493,815
Effective search space: 3760638315
Effective search space used: 3760638315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003187
(1215 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus s... 400 e-111
Alignment gi|NP_001230731.1| RAB8A, member RAS oncogene family [Sus scrof... 261 7e-70
Alignment gi|NP_001229989.1| RAB10, member RAS oncogene family [Sus scrof... 252 3e-67
Alignment gi|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa]. 217 9e-57
Alignment gi|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa]. 211 9e-55
Alignment gi|XP_001929064.3| PREDICTED: ras-related protein Rab-8B-like [... 206 2e-53
Alignment gi|NP_001230220.1| ras-related protein Rab-35 [Sus scrofa]. 200 2e-51
Alignment gi|XP_003123225.1| PREDICTED: ras-related protein Rab-3D-like [... 187 8e-48
Alignment gi|NP_001116651.1| ras-related protein Rab-3A [Sus scrofa]. 187 1e-47
Alignment gi|XP_003128025.1| PREDICTED: ras-related protein Rab-3B-like [... 186 2e-47
>ref|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus scrofa].
Length = 203
Score = 400 bits (1027), Expect = e-111
Identities = 199/199 (100%), Positives = 199/199 (100%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP
Sbjct: 125 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 184
Query: 692 HSTDLKTCDKKNTNKCSLG 748
HSTDLKTCDKKNTNKCSLG
Sbjct: 185 HSTDLKTCDKKNTNKCSLG 203
>ref|NP_001230731.1| RAB8A, member RAS oncogene family [Sus scrofa].
Length = 207
Score = 261 bits (666), Expect = 7e-70
Identities = 122/186 (65%), Positives = 163/186 (87%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGKTC++ RF+ED FN+T+ISTIGIDFKIRT++++GK+IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+NW+++I+E+ASA VE+++LGNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ KR+V KE+ +KLA ++GI+F ETSAK+++NV+ AF +LARDI K + GNS +
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 692 HSTDLK 709
+ +K
Sbjct: 185 SNQGVK 190
>ref|NP_001229989.1| RAB10, member RAS oncogene family [Sus scrofa].
Length = 200
Score = 252 bits (643), Expect = 3e-67
Identities = 119/178 (66%), Positives = 153/178 (85%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD LFKLLLIGDSGVGKTC++ RF++D FN T+ISTIGIDFKI+TV+++GKKIKLQ+WDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF TITT+YYRGAMGI+LVYDIT+ KSFENI W+++I E+A+ VER+LLGNKCD
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSN 685
M+ KR V K + +++AREHGIRFFETSAK+++N+++AF +LA DIL K+ + + N
Sbjct: 126 MDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
>ref|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa].
Length = 205
Score = 217 bits (553), Expect = 9e-57
Identities = 104/197 (52%), Positives = 145/197 (73%), Gaps = 1/197 (0%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT++YYRGA GII+VYD+TD+ SF N++ W++ I AS V +LL+GNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG-GRRLGNSNK 688
+ K+ V A + A GI F ETSAK++ NV+++F ++A +I + G G G + K
Sbjct: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
Query: 689 PHSTDLKTCDKKNTNKC 739
+ T K++ C
Sbjct: 188 SNVKIQSTPVKQSGGGC 204
>ref|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa].
Length = 201
Score = 211 bits (536), Expect = 9e-55
Identities = 97/181 (53%), Positives = 137/181 (75%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ+WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER +TIT++YYRGA GII+VYD+TD++S+ N++ W++ I AS V +LL+GNK D
Sbjct: 65 AGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +P
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184
Query: 692 H 694
+
Sbjct: 185 N 185
>ref|XP_001929064.3| PREDICTED: ras-related protein Rab-8B-like [Sus scrofa].
Length = 283
Score = 206 bits (525), Expect = 2e-53
Identities = 98/141 (69%), Positives = 127/141 (90%)
Frame = +2
Query: 263 GIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN 442
GIDFKIRT++++GKKIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYDIT+EKSF+NI+N
Sbjct: 118 GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN 177
Query: 443 WMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEA 622
W+++I+E+AS+ VER++LGNKCDM KR+V KE+ +KLA ++GI+F ETSAKSSMNV+EA
Sbjct: 178 WIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSMNVEEA 237
Query: 623 FSSLARDILLKSGGRRLGNSN 685
F LARDI+ K R++ +SN
Sbjct: 238 FFILARDIMTKL-NRKMNDSN 257
>ref|NP_001230220.1| ras-related protein Rab-35 [Sus scrofa].
Length = 201
Score = 200 bits (508), Expect = 2e-51
Identities = 96/195 (49%), Positives = 140/195 (71%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
YDHLFKLL+IGDSGVGK+ L++RFA++ F+ +YI+TIG+DFKIRTV+I G+K+KLQ+WDT
Sbjct: 5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 64
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQERF+TIT+ YYRG G+I+VYD+T +SF N++ W+ I +N V R+L+GNK D
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 123
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
++ V+ E A K A + GI+ FETSAK ++NV+E F+ + +++L++ L +
Sbjct: 124 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT-ELVLRAKKDNLAKQQQQ 182
Query: 692 HSTDLKTCDKKNTNK 736
D+ K + K
Sbjct: 183 QQNDVVKLTKNSKRK 197
>ref|XP_003123225.1| PREDICTED: ras-related protein Rab-3D-like [Sus scrofa].
Length = 219
Score = 187 bits (476), Expect = 8e-48
Identities = 90/182 (49%), Positives = 129/182 (70%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FKLLLIG+S VGKT + R+A+D+F ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG +L+YDI +++SF +Q+W IK + + +L+GNKCD
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWSTQIKTYSWDNAQVILVGNKCD 138
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLGNSNKP 691
+E +R V E+ +LA + G FFE SAK ++NV + F L DI+ + L S+ P
Sbjct: 139 LEDERVVPTEEGRRLADDLGFEFFEASAKENINVKQVFERLV-DIICEKMNESLEPSSSP 197
Query: 692 HS 697
S
Sbjct: 198 GS 199
>ref|NP_001116651.1| ras-related protein Rab-3A [Sus scrofa].
Length = 220
Score = 187 bits (475), Expect = 1e-47
Identities = 86/161 (53%), Positives = 120/161 (74%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FK+L+IG+S VGKT + R+A+D+F ++ST+GIDFK++T+ K+IKLQ+WDT
Sbjct: 19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 78
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + LL+GNKCD
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 138
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 634
ME +R V E+ +LA G FFE SAK ++NV + F L
Sbjct: 139 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 179
>ref|XP_003128025.1| PREDICTED: ras-related protein Rab-3B-like [Sus scrofa].
Length = 219
Score = 186 bits (473), Expect = 2e-47
Identities = 86/161 (53%), Positives = 121/161 (75%)
Frame = +2
Query: 152 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 331
+D++FKLL+IG+S VGKT + R+A+D F ++ST+GIDFK++TV + K++KLQ+WDT
Sbjct: 19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRQEKRVKLQIWDT 78
Query: 332 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 511
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + +L+GNKCD
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 512 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 634
ME +R V E+ LA + G FFE SAK +++V +AF L
Sbjct: 139 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,836,919
Number of extensions: 1075129
Number of successful extensions: 3434
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 3312
Number of HSP's successfully gapped: 145
Length of query: 405
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,829,335
Effective search space: 2684117840
Effective search space used: 2684117840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003187
(1215 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 394 e-107
Sscrofa_Chr02 70 3e-09
Sscrofa_Chr01 66 5e-08
Sscrofa_Chr18 60 3e-06
>Sscrofa_Chr04
|| Length = 143465943
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 673 gggaaacagcaacaagccccacagcactgacctgaaaacttgtgacaagaagaacaccaa 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104610689 gggaaacagcaacaagccccacagcactgacctgaaaacttgtgacaagaagaacaccaa 104610748
Query: 733 caagtgctccctgggctgagggcccctttctgcctccccaccctaagcctggaggcagaa 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104610749 caagtgctccctgggctgagggcccctttctgcctccccaccctaagcctggaggcagaa 104610808
Query: 793 cctgagggaggcagggcggaggggctgggcagggagaaatagcaagtggggcttggaggg 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104610809 cctgagggaggcagggcggaggggctgggcagggagaaatagcaagtggggcttggaggg 104610868
Query: 853 atacagatgggtagatggc 871
|||||||||||||||||||
Sbjct: 104610869 atacagatgggtagatggc 104610887
Score = 321 bits (162), Expect = 5e-85
Identities = 172/174 (98%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 1037 atggcctgaggcctcagaccttctctgggttcctggggcaaacatcaatgtaaataaatg 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104611053 atggcctgaggcctcagaccttctctgggttcctggggcaaacatcaatgtaaataaatg 104611112
Query: 1097 actgacttattctgttactggatcaggcttttagggccctgtgcaaagctggctcagcac 1156
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 104611113 actgacttattctgttactggatcaggc-tttagggccctgtgcaaggctggctcagcac 104611171
Query: 1157 caccttctgaaggtttagtccaatcctgtcactctgcatggtctttttcagtat 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104611172 caccttctgaaggtttagtccaatcctgtcactctgcatggtctttttcagtat 104611225
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 130 agtgtccgccatggccaaagcctacgaccacctcttcaagttgctgctgatcggggactc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104606528 agtgtccgccatggccaaagcctacgaccacctcttcaagttgctgctgatcggggactc 104606587
Query: 190 gggggtgggcaagacttgtctgatcattcgctttgcagaggacaacttcaacaacacata 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104606588 gggggtgggcaagacttgtctgatcattcgctttgcagaggacaacttcaacaacacata 104606647
Query: 250 catctccaccatcgg 264
|||||||||||||||
Sbjct: 104606648 catctccaccatcgg 104606662
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 462 agaatgcctccgctggggtagagcgcctcttactggggaacaagtgtgacatggaggcca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104609977 agaatgcctccgctggggtagagcgcctcttactggggaacaagtgtgacatggaggcca 104610036
Query: 522 agaggaaggtacagaaggagcaagccgataag 553
||||||||||||||||||||||||||||||||
Sbjct: 104610037 agaggaaggtacagaaggagcaagccgataag 104610068
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 385 gggcattatcctagtatatgacatcacagatgagaaatcctttgagaacattcagaactg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104609791 gggcattatcctagtatatgacatcacagatgagaaatcctttgagaacattcagaactg 104609850
Query: 445 gatgaagagcatcaaagag 463
|||||||||||||||||||
Sbjct: 104609851 gatgaagagcatcaaagag 104609869
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ctttttcccggagcctgggcggagagggaggaaaacttcctggcctgggctcccggccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104606399 ctttttcccggagcctgggcggagagggaggaaaacttcctggcctgggctcccggccgc 104606458
Query: 61 tcagtcggcca 71
|||||||||||
Sbjct: 104606459 tcagtcggcca 104606469
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 552 agttggcccgggagcatggaatccgttttttcgagacaagtgccaaatccagtatgaacg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104610186 agttggcccgggagcatggaatccgttttttcgagacaagtgccaaatccagtatgaacg 104610245
Query: 612 tagatgagg 620
|||||||||
Sbjct: 104610246 tagatgagg 104610254
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 263 ggaattgatttcaagattcgcactgtggatatagaggggaaaaagatcaaactgcaagtc 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104607989 ggaattgatttcaagattcgcactgtggatatagaggggaaaaagatcaaactgcaagtc 104608048
Query: 323 tgg 325
|||
Sbjct: 104608049 tgg 104608051
Score = 117 bits (59), Expect = 1e-23
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 324 gggacacggctggccaagagcgattcaagacgataaccaccgcctattaccgtggagcca 383
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 104609209 gggacacggctggccaagagcgattcaagacgataactaccgcctattaccgtggagcca 104609268
Query: 384 tgg 386
|||
Sbjct: 104609269 tgg 104609271
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 618 aggcctttagttccctggcccgggacatcttgctcaagtcaggaggccggagattgg 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104610362 aggcctttagttccctggcccgggacatcttgctcaagtcaggaggccggagattgg 104610418
>Sscrofa_Chr02
|| Length = 162569375
Score = 69.9 bits (35), Expect = 3e-09
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 150 cctacgaccacctcttcaagttgctgctgatcggggactcgggggtgggcaagac 204
||||||| |||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 61176979 cctacgattacctgttcaagctgctgctgatcggggactcgggggtggggaagac 61177033
>Sscrofa_Chr01
|| Length = 315321322
Score = 65.9 bits (33), Expect = 5e-08
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 164 ttcaagttgctgctgatcggggactcgggggtgggcaagacttgtctgatcattcgcttt 223
|||||| ||||||||||||| |||||||| ||||||||||| || || | | ||||||
Sbjct: 120063300 ttcaagctgctgctgatcggcgactcgggcgtgggcaagacctgcctcctattccgcttt 120063241
Query: 224 gcagaggacaacttcaacaacacatacatctccaccatcgg 264
| |||||| |||||||| ||| | |||||||||||||||
Sbjct: 120063240 tccgaggacgccttcaacaccaccttcatctccaccatcgg 120063200
>Sscrofa_Chr18
|| Length = 61220071
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 171 tgctgctgatcggggactcgggggtgggcaagac 204
||||||||||||||||||| ||||||||||||||
Sbjct: 2355506 tgctgctgatcggggactccggggtgggcaagac 2355473
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,812,091
Number of extensions: 264
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 13
Length of query: 1215
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1194
Effective length of database: 2,808,413,156
Effective search space: 3353245308264
Effective search space used: 3353245308264
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)