Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003188
(1227 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029824.1| nucleolar protein of 40 kDa [Bos taurus]. 354 1e-97
Alignment gi|XP_002693879.1| PREDICTED: zinc finger, CCHC domain containi... 333 1e-91
Alignment gi|XP_873064.1| PREDICTED: zinc finger, CCHC domain containing ... 333 1e-91
Alignment gi|NP_001193020.1| ATP-dependent RNA helicase DHX8 [Bos taurus]. 59 7e-09
Alignment gi|XP_002696080.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polype... 59 7e-09
>ref|NP_001029824.1| nucleolar protein of 40 kDa [Bos taurus].
Length = 241
Score = 354 bits (908), Expect = 1e-97
Identities = 179/226 (79%), Positives = 181/226 (80%)
Frame = +1
Query: 121 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 300
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 301 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 480
VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 120
Query: 481 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDXXXXXXXXXXXXXXXPDPMK 660
QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPD PD +
Sbjct: 121 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDTTR 180
Query: 661 NSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRARHTSKDNKAA 798
NSS TGKRARHTSKD+KAA
Sbjct: 181 NSSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAA 226
>ref|XP_002693879.1| PREDICTED: zinc finger, CCHC domain containing 17-like [Bos
taurus].
Length = 237
Score = 333 bits (855), Expect = 1e-91
Identities = 171/226 (75%), Positives = 176/226 (77%)
Frame = +1
Query: 121 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 300
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 301 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 480
VDVGDKV VKLIGREMK+DRIKVSLSMKVV+QGT KDLDPNNVIIEQEERRR SFQDYTG
Sbjct: 61 VDVGDKVCVKLIGREMKDDRIKVSLSMKVVDQGTVKDLDPNNVIIEQEERRRWSFQDYTG 120
Query: 481 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDXXXXXXXXXXXXXXXPDPMK 660
Q+ITLEAVLN TCKKCGCKGHFAKDCFMQPGG KYSLIPD PD +
Sbjct: 121 QRITLEAVLNATCKKCGCKGHFAKDCFMQPGGAKYSLIPDEEEEKEEPKSAEFEKPDTTR 180
Query: 661 NSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRARHTSKDNKAA 798
NSS TGKRARHTSKD+KAA
Sbjct: 181 NSSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAA 226
>ref|XP_873064.1| PREDICTED: zinc finger, CCHC domain containing 17 [Bos taurus].
Length = 237
Score = 333 bits (855), Expect = 1e-91
Identities = 171/226 (75%), Positives = 176/226 (77%)
Frame = +1
Query: 121 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 300
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 301 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 480
VDVGDKV VKLIGREMK+DRIKVSLSMKVV+QGT KDLDPNNVIIEQEERRR SFQDYTG
Sbjct: 61 VDVGDKVCVKLIGREMKDDRIKVSLSMKVVDQGTVKDLDPNNVIIEQEERRRWSFQDYTG 120
Query: 481 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDXXXXXXXXXXXXXXXPDPMK 660
Q+ITLEAVLN TCKKCGCKGHFAKDCFMQPGG KYSLIPD PD +
Sbjct: 121 QRITLEAVLNATCKKCGCKGHFAKDCFMQPGGAKYSLIPDEEEEKEEPKSAEFEKPDTTR 180
Query: 661 NSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRARHTSKDNKAA 798
NSS TGKRARHTSKD+KAA
Sbjct: 181 NSSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAA 226
>ref|NP_001193020.1| ATP-dependent RNA helicase DHX8 [Bos taurus].
Length = 1218
Score = 59.3 bits (142), Expect = 7e-09
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Frame = +1
Query: 91 EKWRNHRTLRMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRK--QGLVHRTH 264
++WR+ RP E PA+ I+ G+V + +G F+++ G RK +GLVH +
Sbjct: 245 DRWRDKHV-----DRPPPEE--PAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE 297
Query: 265 MS-SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN---NVI 432
+ RV +++V G +V VK++ K SLSMK V+Q TG+DL+PN N++
Sbjct: 298 LRREGRVANVADVVSKGQRVKVKVLSFT----GTKTSLSMKDVDQETGEDLNPNRRRNLV 353
Query: 433 IEQEE 447
E E
Sbjct: 354 GETNE 358
>ref|XP_002696080.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Bos taurus].
Length = 1218
Score = 59.3 bits (142), Expect = 7e-09
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Frame = +1
Query: 91 EKWRNHRTLRMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRK--QGLVHRTH 264
++WR+ RP E PA+ I+ G+V + +G F+++ G RK +GLVH +
Sbjct: 245 DRWRDKHV-----DRPPPEE--PAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE 297
Query: 265 MS-SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN---NVI 432
+ RV +++V G +V VK++ K SLSMK V+Q TG+DL+PN N++
Sbjct: 298 LRREGRVANVADVVSKGQRVKVKVLSFT----GTKTSLSMKDVDQETGEDLNPNRRRNLV 353
Query: 433 IEQEE 447
E E
Sbjct: 354 GETNE 358
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,156,336
Number of extensions: 1206018
Number of successful extensions: 2952
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2947
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003188
(1227 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535332.2| PREDICTED: similar to putative S1 RNA binding d... 357 1e-98
Alignment gi|XP_537627.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) bo... 59 7e-09
Alignment gi|XP_857363.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) bo... 59 7e-09
>ref|XP_535332.2| PREDICTED: similar to putative S1 RNA binding domain protein [Canis
familiaris].
Length = 241
Score = 357 bits (916), Expect = 1e-98
Identities = 180/226 (79%), Positives = 182/226 (80%)
Frame = +1
Query: 121 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 300
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 301 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 480
VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 120
Query: 481 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDXXXXXXXXXXXXXXXPDPMK 660
QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPD PDP +
Sbjct: 121 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR 180
Query: 661 NSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRARHTSKDNKAA 798
NSS TGKRARHTSKD+KAA
Sbjct: 181 NSSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAA 226
>ref|XP_537627.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
isoform 1 [Canis familiaris].
Length = 1216
Score = 59.3 bits (142), Expect = 7e-09
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Frame = +1
Query: 91 EKWRNHRTLRMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRK--QGLVHRTH 264
++WR+ RP E PA+ I+ G+V + +G F+++ G RK +GLVH +
Sbjct: 243 DRWRDKHV-----DRPPPEE--PAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE 295
Query: 265 MS-SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN---NVI 432
+ RV +++V G +V VK++ K SLSMK V+Q TG+DL+PN N++
Sbjct: 296 LRREGRVANVADVVSKGQRVKVKVLSFT----GTKTSLSMKDVDQETGEDLNPNRRRNLV 351
Query: 433 IEQEE 447
E E
Sbjct: 352 GETNE 356
>ref|XP_857363.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8
isoform 3 [Canis familiaris].
Length = 1163
Score = 59.3 bits (142), Expect = 7e-09
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Frame = +1
Query: 91 EKWRNHRTLRMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRK--QGLVHRTH 264
++WR+ RP E PA+ I+ G+V + +G F+++ G RK +GLVH +
Sbjct: 190 DRWRDKHV-----DRPPPEE--PAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE 242
Query: 265 MS-SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN---NVI 432
+ RV +++V G +V VK++ K SLSMK V+Q TG+DL+PN N++
Sbjct: 243 LRREGRVANVADVVSKGQRVKVKVLSFT----GTKTSLSMKDVDQETGEDLNPNRRRNLV 298
Query: 433 IEQEE 447
E E
Sbjct: 299 GETNE 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,663,363
Number of extensions: 1171735
Number of successful extensions: 2872
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2869
Number of HSP's successfully gapped: 3
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003188
(1227 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057589.2| nucleolar protein of 40 kDa [Homo sapiens]. 355 5e-98
Alignment gi|NP_004932.1| ATP-dependent RNA helicase DHX8 [Homo sapiens]. 58 2e-08
>ref|NP_057589.2| nucleolar protein of 40 kDa [Homo sapiens].
Length = 241
Score = 355 bits (911), Expect = 5e-98
Identities = 179/226 (79%), Positives = 181/226 (80%)
Frame = +1
Query: 121 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 300
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 301 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 480
VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 120
Query: 481 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDXXXXXXXXXXXXXXXPDPMK 660
QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPD PDP +
Sbjct: 121 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR 180
Query: 661 NSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRARHTSKDNKAA 798
N S TGKRARHTSKD+KAA
Sbjct: 181 NPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAA 226
>ref|NP_004932.1| ATP-dependent RNA helicase DHX8 [Homo sapiens].
Length = 1220
Score = 57.8 bits (138), Expect = 2e-08
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Frame = +1
Query: 91 EKWRNHRTLRMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRK--QGLVHRTH 264
++WR+ RP E P + I+ G+V + +G F+++ G RK +GLVH +
Sbjct: 247 DRWRDKHV-----DRPPPEE--PTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE 299
Query: 265 MS-SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN---NVI 432
+ RV +++V G +V VK++ K SLSMK V+Q TG+DL+PN N++
Sbjct: 300 LRREGRVANVADVVSKGQRVKVKVLSFT----GTKTSLSMKDVDQETGEDLNPNRRRNLV 355
Query: 433 IEQEE 447
E E
Sbjct: 356 GETNE 360
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,840,341
Number of extensions: 1152495
Number of successful extensions: 3157
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3156
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003188
(1227 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694800.1| nucleolar protein of 40 kDa [Mus musculus]. 352 3e-97
Alignment gi|NP_659080.2| ATP-dependent RNA helicase DHX8 [Mus musculus]. 59 6e-09
>ref|NP_694800.1| nucleolar protein of 40 kDa [Mus musculus].
Length = 241
Score = 352 bits (903), Expect = 3e-97
Identities = 176/225 (78%), Positives = 181/225 (80%)
Frame = +1
Query: 121 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 300
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 301 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG 480
VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNV+IEQEERRRRSFQDYTG
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVVIEQEERRRRSFQDYTG 120
Query: 481 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDXXXXXXXXXXXXXXXPDPMK 660
QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIP+ PDP K
Sbjct: 121 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPEEEEEKEEAKAEGLEKPDPTK 180
Query: 661 NSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRARHTSKDNKA 795
NSS TGK+ARH+SKD+KA
Sbjct: 181 NSSRKRKKEKKKKKHRDRKSSDCDSSDSESDTGKKARHSSKDSKA 225
>ref|NP_659080.2| ATP-dependent RNA helicase DHX8 [Mus musculus].
Length = 1244
Score = 59.3 bits (142), Expect = 6e-09
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Frame = +1
Query: 91 EKWRNHRTLRMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRK--QGLVHRTH 264
++WR+ RP E PA+ I+ G+V + +G F+++ G RK +GLVH +
Sbjct: 271 DRWRDKHV-----DRPPPEE--PAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE 323
Query: 265 MS-SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN---NVI 432
+ RV +++V G +V VK++ K SLSMK V+Q TG+DL+PN N++
Sbjct: 324 LRREGRVANVADVVSKGQRVKVKVLSFT----GTKTSLSMKDVDQETGEDLNPNRRRNLV 379
Query: 433 IEQEE 447
E E
Sbjct: 380 GETNE 384
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,991,314
Number of extensions: 972086
Number of successful extensions: 2615
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2613
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003188
(1227 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127813.2| PREDICTED: hypothetical protein LOC100520252... 78 9e-15
Alignment gi|XP_003131427.2| PREDICTED: ATP-dependent RNA helicase DHX8 i... 59 4e-09
>ref|XP_003127813.2| PREDICTED: hypothetical protein LOC100520252 [Sus scrofa].
Length = 310
Score = 78.2 bits (191), Expect = 9e-15
Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 2/63 (3%)
Frame = +1
Query: 196 VTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM--KNDRIKV 369
+T+ +++PG +GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGRE + D+ +V
Sbjct: 217 LTNCWVVLRVPG-PVRGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGRESLPQKDQRRV 275
Query: 370 SLS 378
LS
Sbjct: 276 LLS 278
>ref|XP_003131427.2| PREDICTED: ATP-dependent RNA helicase DHX8 isoform 1 [Sus scrofa].
Length = 1212
Score = 59.3 bits (142), Expect = 4e-09
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Frame = +1
Query: 91 EKWRNHRTLRMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRK--QGLVHRTH 264
++WR+ RP E PA+ I+ G+V + +G F+++ G RK +GLVH +
Sbjct: 239 DRWRDKHV-----DRPPPEE--PAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE 291
Query: 265 MS-SCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN---NVI 432
+ RV +++V G +V VK++ K SLSMK V+Q TG+DL+PN N++
Sbjct: 292 LRREGRVANVADVVSKGQRVKVKVLSFT----GTKTSLSMKDVDQETGEDLNPNRRRNLV 347
Query: 433 IEQEE 447
E E
Sbjct: 348 GETNE 352
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,107,584
Number of extensions: 875163
Number of successful extensions: 1855
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1854
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003188
(1227 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 626 e-177
>Sscrofa_Chr06
|| Length = 157765593
Score = 626 bits (316), Expect = e-177
Identities = 380/396 (95%), Gaps = 4/396 (1%)
Strand = Plus / Plus
Query: 835 cacaaggagtgagagtggaaagagtagaaggggtggttgagagaaggaaaccggagcctt 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81631230 cacaaggagtgagagtggaaagagtagaaggggtggttgagagaaggaaaccggagcctt 81631289
Query: 895 gtaccttgaagccctggctcctggaaggactcactagtgagaatgtggcctcccacccca 954
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81631290 gtgccttgaagccctggctcctggaaggactcactagtgagaatgtggcctcccacccca 81631349
Query: 955 ttttctctcccatggaaggtggcttccccttagccacaggcaggtttgggagttaagtat 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81631350 ttttctctcccatggaaggtggcttccccttagccacaggcaggtttgggagttaagtat 81631409
Query: 1015 caaaaccatctgcctgaacgagttgttt-cttatcactcctggtccctctgcaagtgacc 1073
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 81631410 caaaaccatctgcctgaacgagttgtttccttatcactcctggtccctctgcaagtgacc 81631469
Query: 1074 cctgcaggctca-cctctcatcgacccaatttctttca-tcagcaggaggtcctgttaac 1131
|||||| ||||| ||||||||| |||||| ||| |||| |||||||||||||||||||||
Sbjct: 81631470 cctgca-gctcaccctctcatccacccaacttccttcattcagcaggaggtcctgttaac 81631528
Query: 1132 ctctccagctgccactggcaaagccagattcctataccggattctaggctagaaccacag 1191
||||||||||||||||| || |||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 81631529 ctctccagctgccactgccagagccagattcctatacaggagtctaggctagagccacag 81631588
Query: 1192 gtactgctgtggaagtgaatctggctatatttggag 1227
||||||||||||| |||| |||||||||| ||||||
Sbjct: 81631589 gtactgctgtggaggtgagtctggctatagttggag 81631624
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 66 gacacttgaattaactttagcagaagagaaatggaggaaccatagaacattaaggatgaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81596395 gacacttgaattaactttagcagaagagaaatggaggaaccatagaacattaaggatgaa 81596454
Query: 126 ttcgggaagacctgagaccatggagaacttgcctgctctctacactattttccaaggaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81596455 ttcgggaagacctgagaccatggagaacttgcctgctctctacactattttccaaggaga 81596514
Query: 186 ggt 188
|||
Sbjct: 81596515 ggt 81596517
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 66 gacacttgaattaactttagcagaagagaaatggaggaaccatagaacattaaggatgaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81705208 gacacttgaattaactttagcagaagagaaatggaggaaccatagaacattaaggatgaa 81705149
Query: 126 ttcgggaagacctgagaccatggagaacttgcctgctctctacactattttccaaggaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81705148 ttcgggaagacctgagaccatggagaacttgcctgctctctacactattttccaaggaga 81705089
Query: 186 ggt 188
|||
Sbjct: 81705088 ggt 81705086
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 243 aggtctggtccatcgaactcacatgtcatcctgtcgagtggataagccttctgagatagt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81646578 aggtctggtccatcgaactcacatgtcatcctgtcgagtggataagccttctgagatagt 81646519
Query: 303 agatgtcggagacaaagtgtgggtgaagctaattggccgagag 345
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81646518 agatgtcggagacaaagtgtgggtgaagctaattggccgagag 81646476
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 344 agatgaaaaatgataggataaaagtatccctctccatgaaagttgtcaaccaagggactg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81644419 agatgaaaaatgataggataaaagtatccctctccatgaaagttgtcaaccaagggactg 81644360
Query: 404 ggaaggaccttgaccccaacaacgttatcattgag 438
|||||||||||||||||||||||||||||||||||
Sbjct: 81644359 ggaaggaccttgaccccaacaacgttatcattgag 81644325
Score = 186 bits (94), Expect = 2e-44
Identities = 101/102 (99%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 438 gcaagaagagaggcggaggaggtccttccaggattacactgggcagaagatcactctcga 497
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81613790 gcaagaagagag-cggaggaggtccttccaggattacactgggcagaagatcactctcga 81613848
Query: 498 ggctgtcctgaacactacctgcaagaagtgtggctgtaaagg 539
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81613849 ggctgtcctgaacactacctgcaagaagtgtggctgtaaagg 81613890
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 718 tcatctaactctgacagctcagactctgagagtgatacaggcaagagggcaaggcacaca 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81631113 tcatctaactctgacagctcagactctgagagtgatacaggcaagagggcaaggcacaca 81631172
Query: 778 tcaaaagacaacaaggcggcc 798
|||||||||||||||||||||
Sbjct: 81631173 tcaaaagacaacaaggcggcc 81631193
Score = 123 bits (62), Expect = 2e-25
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 gcgcgctgactgggttctggcgtttcgcgcaatgctgcggcggggagacctgacgctaac 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 81586468 gcgcgctgactgggttctggcgtttcgtgcaatgctgcggcggggagacctgacgctaac 81586527
Query: 61 tccgag 66
||||||
Sbjct: 81586528 tccgag 81586533
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 185 aggttgctatggtgacagactatggagcctttatcaaaatcccaggctgtcggaaacaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81603456 aggttgctatggtgacagactatggagcctttatcaaaatcccaggctgtcggaaacaag 81603515
Query: 245 gt 246
||
Sbjct: 81603516 gt 81603517
Score = 123 bits (62), Expect = 2e-25
Identities = 75/78 (96%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 537 aggccactttgcgaaggattgtttcatgcagccaggtgggaccaagtactctctgatacc 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 81615788 aggccactttgcgaaggattgtttcatgcagccagg-gggaccaagtactctctgatacc 81615846
Query: 597 tgatgaggaagaggagaa 614
||||||||| || |||||
Sbjct: 81615847 tgatgaggacgatgagaa 81615864
Score = 103 bits (52), Expect = 2e-19
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 285 taagccttctgagatagtagatgtcggagacaaagtgtgggtgaagctaattggcc 340
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 81646947 taagccttctgagatagtagatgttggagacaaagtgtgggtgaagctaattggcc 81646892
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,049,527
Number of extensions: 401
Number of successful extensions: 401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 11
Length of query: 1227
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1206
Effective length of database: 2,808,413,156
Effective search space: 3386946266136
Effective search space used: 3386946266136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)