Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003198
(496 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209205.1| NADH dehydrogenase subunit 1 [Bos taurus]. 158 3e-39
Alignment gi|XP_002686789.1| PREDICTED: NADH dehydrogenase subunit 1-like... 85 3e-17
Alignment gi|XP_002704113.1| PREDICTED: NADH dehydrogenase subunit 1-like... 85 3e-17
>ref|YP_209205.1| NADH dehydrogenase subunit 1 [Bos taurus].
Length = 318
Score = 158 bits (399), Expect = 3e-39
Identities = 80/127 (62%), Positives = 92/127 (72%)
Frame = +1
Query: 1 ETNPAPFDLTEGESELVSGFNVEYAAGPXXXXXXXXXXXXXXXXXXXXXXXXGAFHDPHT 180
ETN APFDLTEGESELVSGFNVEYAAGP G H+PH
Sbjct: 192 ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNIFTAILFLGTSHNPHM 251
Query: 181 SELYTINFVLKTLALTITFL*IRASYPRFRYDQLIHLL*KSFLPLTLALCI*HISLPIIT 360
ELYTINF +K+L LT++FL IRASYPRFRYDQL+HLL K+FLPLTLALC+ H+SLPI+T
Sbjct: 252 PELYTINFTIKSLLLTMSFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVSLPILT 311
Query: 361 ASIPPQS 381
+ IPPQ+
Sbjct: 312 SGIPPQT 318
>ref|XP_002686789.1| PREDICTED: NADH dehydrogenase subunit 1-like [Bos taurus].
Length = 138
Score = 85.1 bits (209), Expect = 3e-17
Identities = 45/80 (56%), Positives = 49/80 (61%)
Frame = +1
Query: 1 ETNPAPFDLTEGESELVSGFNVEYAAGPXXXXXXXXXXXXXXXXXXXXXXXXGAFHDPHT 180
ETN APFDLTEGESELVSGFNVEYAAGP GAFH+P
Sbjct: 59 ETNQAPFDLTEGESELVSGFNVEYAAGPFTLFFIAEYANIIIMNIFTTILFLGAFHNPCI 118
Query: 181 SELYTINFVLKTLALTITFL 240
ELYTINF +K+L L I+FL
Sbjct: 119 PELYTINFTIKSLLLAISFL 138
>ref|XP_002704113.1| PREDICTED: NADH dehydrogenase subunit 1-like [Bos taurus].
Length = 138
Score = 85.1 bits (209), Expect = 3e-17
Identities = 45/80 (56%), Positives = 49/80 (61%)
Frame = +1
Query: 1 ETNPAPFDLTEGESELVSGFNVEYAAGPXXXXXXXXXXXXXXXXXXXXXXXXGAFHDPHT 180
ETN APFDLTEGESELVSGFNVEYAAGP GAFH+P
Sbjct: 59 ETNQAPFDLTEGESELVSGFNVEYAAGPFTLFFIAEYANIIIMNIFTTILFLGAFHNPCI 118
Query: 181 SELYTINFVLKTLALTITFL 240
ELYTINF +K+L L I+FL
Sbjct: 119 PELYTINFTIKSLLLAISFL 138
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 11,882,802
Number of extensions: 310158
Number of successful extensions: 564
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 3
Length of query: 165
Length of database: 17,681,374
Length adjustment: 94
Effective length of query: 71
Effective length of database: 14,571,102
Effective search space: 1034548242
Effective search space used: 1034548242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003198
(496 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008471.1| NADH dehydrogenase subunit 1 [Canis lupus famil... 162 2e-40
>ref|NP_008471.1| NADH dehydrogenase subunit 1 [Canis lupus familiaris].
Length = 318
Score = 162 bits (409), Expect = 2e-40
Identities = 84/127 (66%), Positives = 93/127 (73%)
Frame = +1
Query: 1 ETNPAPFDLTEGESELVSGFNVEYAAGPXXXXXXXXXXXXXXXXXXXXXXXXGAFHDPHT 180
ETN APFDLTEGESELVSGFNVEYAAGP GAFH+P
Sbjct: 192 ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNILTTILFFGAFHNPFM 251
Query: 181 SELYTINFVLKTLALTITFL*IRASYPRFRYDQLIHLL*KSFLPLTLALCI*HISLPIIT 360
ELY+INF +KTL LTI FL IRASYPRFRYDQL+HLL K+FLPLTLALC+ H++LPIIT
Sbjct: 252 PELYSINFTMKTLLLTICFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVALPIIT 311
Query: 361 ASIPPQS 381
ASIPPQ+
Sbjct: 312 ASIPPQT 318
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 11,875,737
Number of extensions: 213365
Number of successful extensions: 571
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 18,874,504
Length adjustment: 95
Effective length of query: 70
Effective length of database: 15,707,584
Effective search space: 1099530880
Effective search space used: 1099530880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003198
(496 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024026.1| NADH dehydrogenase subunit 1 [Homo sapiens]. 130 4e-31
>ref|YP_003024026.1| NADH dehydrogenase subunit 1 [Homo sapiens].
Length = 318
Score = 130 bits (328), Expect = 4e-31
Identities = 70/127 (55%), Positives = 82/127 (64%)
Frame = +1
Query: 1 ETNPAPFDLTEGESELVSGFNVEYAAGPXXXXXXXXXXXXXXXXXXXXXXXXGAFHDPHT 180
ETN PFDL EGESELVSGFN+EYAAGP G +D +
Sbjct: 192 ETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYDALS 251
Query: 181 SELYTINFVLKTLALTITFL*IRASYPRFRYDQLIHLL*KSFLPLTLALCI*HISLPIIT 360
ELYT FV KTL LT FL IR +YPRFRYDQL+HLL K+FLPLTLAL + ++S+PI
Sbjct: 252 PELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITI 311
Query: 361 ASIPPQS 381
+SIPPQ+
Sbjct: 312 SSIPPQT 318
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 11,671,713
Number of extensions: 202426
Number of successful extensions: 577
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 18,297,164
Length adjustment: 95
Effective length of query: 70
Effective length of database: 15,165,584
Effective search space: 1061590880
Effective search space used: 1061590880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003198
(496 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904328.1| NADH dehydrogenase subunit 1 [Mus musculus]. 140 6e-34
>ref|NP_904328.1| NADH dehydrogenase subunit 1 [Mus musculus].
Length = 318
Score = 140 bits (352), Expect = 6e-34
Identities = 74/125 (59%), Positives = 85/125 (68%)
Frame = +1
Query: 1 ETNPAPFDLTEGESELVSGFNVEYAAGPXXXXXXXXXXXXXXXXXXXXXXXXGAFHDPHT 180
ETN APFDLTEGESELVSGFNVEYAAGP G + +
Sbjct: 192 ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALTTIIFLGPLYYINL 251
Query: 181 SELYTINFVLKTLALTITFL*IRASYPRFRYDQLIHLL*KSFLPLTLALCI*HISLPIIT 360
ELY+ NF+++ L L+ TFL IRASYPRFRYDQL+HLL K+FLPLTLALC+ HISLPI T
Sbjct: 252 PELYSTNFMMEALLLSSTFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIFT 311
Query: 361 ASIPP 375
A +PP
Sbjct: 312 AGVPP 316
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 10,031,870
Number of extensions: 179951
Number of successful extensions: 452
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 15,617,559
Length adjustment: 94
Effective length of query: 71
Effective length of database: 12,794,175
Effective search space: 908386425
Effective search space used: 908386425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003198
(496 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008634.1| NADH dehydrogenase subunit 1 [Sus scrofa]. 177 3e-45
>ref|NP_008634.1| NADH dehydrogenase subunit 1 [Sus scrofa].
Length = 318
Score = 177 bits (449), Expect = 3e-45
Identities = 94/127 (74%), Positives = 97/127 (76%)
Frame = +1
Query: 1 ETNPAPFDLTEGESELVSGFNVEYAAGPXXXXXXXXXXXXXXXXXXXXXXXXGAFHDPHT 180
ETN APFDLTEGESELVSGFNVEYAAGP GA HDPHT
Sbjct: 192 ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYANIIMMNAFTAILFLGASHDPHT 251
Query: 181 SELYTINFVLKTLALTITFL*IRASYPRFRYDQLIHLL*KSFLPLTLALCI*HISLPIIT 360
ELYTINFVLKTLALTITFL IRASYPRFRYDQL+HLL KSFLPLTLALC+ HISLPI+T
Sbjct: 252 PELYTINFVLKTLALTITFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISLPIMT 311
Query: 361 ASIPPQS 381
ASIPPQS
Sbjct: 312 ASIPPQS 318
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 8,584,726
Number of extensions: 358074
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 11,343,932
Length adjustment: 91
Effective length of query: 74
Effective length of database: 9,078,305
Effective search space: 671794570
Effective search space used: 671794570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003198
(496 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 371 e-100
Sscrofa_Chr05 250 6e-64
Sscrofa_Chr17 129 2e-27
Sscrofa_Chr02 94 9e-17
gb|JH118529.1| Sus scrofa unplaced genomic scaffold ChrUScaf858 80 1e-12
Sscrofa_Chr06 80 1e-12
Sscrofa_Chr01 80 1e-12
Sscrofa_Chr08 68 5e-09
>Sscrofa_ChrX
|| Length = 144288218
Score = 371 bits (187), Expect = e-100
Identities = 307/347 (88%)
Strand = Plus / Plus
Query: 1 gaaaccaacccagccccgttcgaccttacagaaggagagtcagaacttgtatcaggcttt 60
|||||||||| |||||| || | ||||||||||||||| || |||| |||| |||||
Sbjct: 23491595 gaaaccaaccgagccccatttggccttacagaaggagaatccaaactcgtattcggcttc 23491654
Query: 61 aacgtagaatatgcagccggacctttcgccatattcttcatagcagaatatgccaacatc 120
||||||||||| |||||||| |||| |||||||||||||| |||||||| |||||||||
Sbjct: 23491655 aacgtagaatacacagccggatcttttgccatattcttcattgcagaatacgccaacatc 23491714
Query: 121 atcataataaatgcattcacagcaattctcttcctaggagcattccacgacccacacaca 180
||||||||||| |||||||||||||| | |||||||||||||||||||||| ||| |||
Sbjct: 23491715 atcataataaacgcattcacagcaatcttgttcctaggagcattccacgacctacataca 23491774
Query: 181 tcagaactatatacaatcaacttcgtactaaaaacactcgcattaacaatcaccttccta 240
|||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct: 23491775 ccagaactatatacaatcaactttgtattaaaaacactcgcactaacaatcaccttccta 23491834
Query: 241 tgaatccgagcatcatacccacgattccgatatgaccaactaatacatttactatgaaaa 300
|||||||||||||| |||||| | ||||||||||| ||| ||||||| |||||||||||
Sbjct: 23491835 tgaatccgagcatcctacccatgcttccgatatgatcaattaatacacctactatgaaaa 23491894
Query: 301 agcttcctgcccctaacactagctctatgtatatgacacatctcact 347
|||||||| || ||| ||||||| || || |||||||||||||||||
Sbjct: 23491895 agcttcctaccactaccactagccctgtgcatatgacacatctcact 23491941
>Sscrofa_Chr05
|| Length = 111506441
Score = 250 bits (126), Expect = 6e-64
Identities = 195/218 (89%)
Strand = Plus / Plus
Query: 35 gagagtcagaacttgtatcaggctttaacgtagaatatgcagccggacctttcgccatat 94
|||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 77605942 gagaatcagaacttgtatcaggctttaatgtagaatacgcagccggaccttttgccatat 77606001
Query: 95 tcttcatagcagaatatgccaacatcatcataataaatgcattcacagcaattctcttcc 154
| |||||||||||||| |||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct: 77606002 ttttcatagcagaatacaccaacatcattataataaacgcatttacagcaattcttttcc 77606061
Query: 155 taggagcattccacgacccacacacatcagaactatatacaatcaacttcgtactaaaaa 214
||| |||||| ||||||| |||||||||||| ||||||||||||| || ||| ||||||
Sbjct: 77606062 tagaagcatttcacgacctgcacacatcagaattatatacaatcaattttgtattaaaaa 77606121
Query: 215 cactcgcattaacaatcaccttcctatgaatccgagca 252
| |||||||||||||| || |||||||||||| |||||
Sbjct: 77606122 cgctcgcattaacaattactttcctatgaatctgagca 77606159
>Sscrofa_Chr17
|| Length = 69701581
Score = 129 bits (65), Expect = 2e-27
Identities = 174/204 (85%), Gaps = 6/204 (2%)
Strand = Plus / Plus
Query: 12 agccccgttcgaccttacagaaggagagtcagaacttgt-atcaggctttaacgtagaat 70
|||||| || ||||||||||||||||| || |||| || ||| ||||| ||||||||||
Sbjct: 15217905 agccccatttgaccttacagaaggagaatccaaactcgttatctggcttcaacgtagaat 15217964
Query: 71 atgcagccggacctttcgccatattcttcatagcagaatatg-ccaacatcatcataata 129
| |||| |||||||| |||||||||| |||||||| || |||||||| | ||||||
Sbjct: 15217965 acacagctggaccttttgccatattct--atagcagagtaactccaacatcgttataata 15218022
Query: 130 aatgcattcacagcaattctcttcctaggagcattccacgacccacacacatcagaacta 189
||||||||||||||||| || ||| |||||||||| ||| |||| ||||||||||||||
Sbjct: 15218023 aatgcattcacagcaatcctattcttaggagcatt-cacaaccc-tacacatcagaacta 15218080
Query: 190 tatacaatcaacttcgtactaaaa 213
| ||||||||||||||| ||||||
Sbjct: 15218081 tgtacaatcaacttcgtcctaaaa 15218104
>Sscrofa_Chr02
|| Length = 162569375
Score = 93.7 bits (47), Expect = 9e-17
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 316 acactagctctatgtatatgacacatctcactccctattataacagcaagtattccccca 375
|||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 84070804 acactagccctatgtatatgacacatctcactacccattataacagcaagcattccccca 84070863
Query: 376 caa 378
|||
Sbjct: 84070864 caa 84070866
>gb|JH118529.1| Sus scrofa unplaced genomic scaffold ChrUScaf858
Length = 107892
Score = 79.8 bits (40), Expect = 1e-12
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 12 agccccgttcgaccttacagaaggagagtcagaacttgtatcaggctttaacgtagaata 71
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||
Sbjct: 55684 agccccattcgaccttacagaagaagaatcagaacttgtatcaggctttaatgtataata 55625
>Sscrofa_Chr06
|| Length = 157765593
Score = 79.8 bits (40), Expect = 1e-12
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 293 tatgaaaaagcttcctgcccctaacactagctctatgtatatgacacatctc 344
|||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 157471799 tatgaagaagcttcctgccgctgacactagctctatgtatatgacacatctc 157471850
>Sscrofa_Chr01
|| Length = 315321322
Score = 79.8 bits (40), Expect = 1e-12
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 12 agccccgttcgaccttacagaaggagagtcagaacttgtatcaggctttaacgtagaata 71
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||
Sbjct: 280940864 agccccattcgaccttacagaagaagaatcagaacttgtatcaggctttaatgtataata 280940805
Score = 79.8 bits (40), Expect = 1e-12
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 12 agccccgttcgaccttacagaaggagagtcagaacttgtatcaggctttaacgtagaata 71
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||
Sbjct: 281081022 agccccattcgaccttacagaagaagaatcagaacttgtatcaggctttaatgtataata 281080963
>Sscrofa_Chr08
|| Length = 148491826
Score = 67.9 bits (34), Expect = 5e-09
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 325 ctatgtatatgacacatctcactccctattataacagcaagtattcccccacaa 378
||||||||||||||||||||||| || || |||| |||||| ||||||||||||
Sbjct: 55019235 ctatgtatatgacacatctcactacccatcataatagcaagcattcccccacaa 55019288
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 10,981,501
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 9
Length of query: 496
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 475
Effective length of database: 2,808,413,156
Effective search space: 1333996249100
Effective search space used: 1333996249100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)