Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003200
(1325 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitoc... 297 1e-80
Alignment gi|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 249 4e-66
Alignment gi|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 249 4e-66
Alignment gi|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 249 4e-66
Alignment gi|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [B... 237 2e-62
Alignment gi|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isofo... 237 2e-62
Alignment gi|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos t... 233 4e-61
Alignment gi|NP_847890.1| peptidyl-prolyl cis-trans isomerase A [Bos taur... 223 5e-61
Alignment gi|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus]. 220 2e-57
Alignment gi|XP_002685500.1| PREDICTED: TRIMCyp-like [Bos taurus]. 218 1e-56
>ref|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Bos
taurus].
Length = 209
Score = 297 bits (761), Expect = 1e-80
Identities = 143/160 (89%), Positives = 144/160 (90%)
Frame = +2
Query: 161 ATRACXXXXXXXXXXXXARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 340
A R C + NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE
Sbjct: 27 AVRVCSSGSGSHGSSSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 86
Query: 341 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA 520
KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKH GPGVLSMANA
Sbjct: 87 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANA 146
Query: 521 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 640
GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE
Sbjct: 147 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE 186
>ref|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 249 bits (636), Expect = 4e-66
Identities = 116/162 (71%), Positives = 127/162 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ DG+PLGRV EL AD VPKTAENFRAL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGM+ V+ +E I I DCGQ+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQI 164
>ref|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 249 bits (636), Expect = 4e-66
Identities = 116/162 (71%), Positives = 127/162 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ DG+PLGRV EL AD VPKTAENFRAL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGM+ V+ +E I I DCGQ+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQI 164
>ref|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like isoform 1 [Bos
taurus].
Length = 164
Score = 249 bits (636), Expect = 4e-66
Identities = 116/162 (71%), Positives = 127/162 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ DG+PLGRV EL AD VPKTAENFRAL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGM+ V+ +E I I DCGQ+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQI 164
>ref|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [Bos taurus].
Length = 164
Score = 237 bits (604), Expect = 2e-62
Identities = 112/162 (69%), Positives = 123/162 (75%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ ++ DG+PLGRV EL AD VPKTAEN AL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GD T HNGTGGKSIYG +F DENF LKH GPG+LS ANAGPNTNGSQFF CT KT+WL
Sbjct: 63 QGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGMDVV+ +E I I DCGQ+
Sbjct: 123 DGKHVVFGKVKEGMDVVEAMERFGSRNGKTSKKITIADCGQI 164
>ref|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isoform 1 [Bos taurus].
Length = 164
Score = 237 bits (604), Expect = 2e-62
Identities = 112/162 (69%), Positives = 123/162 (75%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ ++ DG+PLGRV EL AD VPKTAEN AL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GD T HNGTGGKSIYG +F DENF LKH GPG+LS ANAGPNTNGSQFF CT KT+WL
Sbjct: 63 QGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGMDVV+ +E I I DCGQ+
Sbjct: 123 DGKHVVFGKVKEGMDVVEAMERFGSRNGKTSKKITIADCGQI 164
>ref|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos taurus].
Length = 301
Score = 233 bits (593), Expect = 4e-61
Identities = 103/161 (63%), Positives = 127/161 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMC
Sbjct: 139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 198
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWL
Sbjct: 199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 258
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHVVFG + +G+DV+++IE ++I+DCG+
Sbjct: 259 DGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299
>ref|NP_847890.1| peptidyl-prolyl cis-trans isomerase A [Bos taurus].
Length = 159
Score = 223 bits (567), Expect(2) = 5e-61
Identities = 102/133 (76%), Positives = 110/133 (82%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ DG+PLGRV EL AD VPKTAENFRAL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEG 616
DGKHVV + G
Sbjct: 123 DGKHVVLWQGERG 135
Score = 31.6 bits (70), Expect(2) = 5e-61
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 595 VWPCQRGHGCCEENRIFRLQEWEDIQENCH 684
+W +RGH C + +QEW+D QE+ H
Sbjct: 129 LWQGERGHEYCGSHGALWVQEWQDQQEDHH 158
>ref|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus].
Length = 3035
Score = 220 bits (561), Expect = 2e-57
Identities = 102/162 (62%), Positives = 124/162 (76%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP+V+ D+ AD +PLGR+ +EL +++VPKTAENFRALCTGEKGFG+K S FHRVIP F+C
Sbjct: 2874 NPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFGFKSSIFHRVIPDFVC 2933
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GD T H+GTGG+SIYG +F DENF +KH GPG+LSMAN G +TN SQFFI K + L
Sbjct: 2934 QGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERL 2993
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
D KHVVFG VK+GMD VKKIE I+IT+CGQ+
Sbjct: 2994 DFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 3035
>ref|XP_002685500.1| PREDICTED: TRIMCyp-like [Bos taurus].
Length = 176
Score = 218 bits (555), Expect = 1e-56
Identities = 102/162 (62%), Positives = 117/162 (72%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP+ + D+ D +PLG V EL AD VPKT ENF A TGEKGFGYK S FHR++ MC
Sbjct: 15 NPIFFFDIAVDSKPLGHVSFELFADEVPKTEENFHAQSTGEKGFGYKVSCFHRIVLGLMC 74
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F DENF LKH GPG LSM NAGPNTN SQFFICT KT+WL
Sbjct: 75 QGGDFTCHNGTGGKSIYGKKFYDENFILKHTGPGTLSMVNAGPNTNSSQFFICTAKTEWL 134
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DG +VVFG VKEGMD+V+ +E I I+DCG++
Sbjct: 135 DGMYVVFGKVKEGMDIVEAMECFGSRNGKTSKRITISDCGKI 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,705,316
Number of extensions: 1479066
Number of successful extensions: 5882
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 5847
Number of HSP's successfully gapped: 38
Length of query: 441
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 336
Effective length of database: 14,207,134
Effective search space: 4773597024
Effective search space used: 4773597024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003200
(1325 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 269 5e-72
Alignment gi|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase ... 234 1e-61
Alignment gi|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 234 2e-61
Alignment gi|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase ... 231 1e-60
Alignment gi|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 229 3e-60
Alignment gi|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase ... 227 2e-59
Alignment gi|XP_852435.1| PREDICTED: similar to peptidylprolyl isomerase ... 226 4e-59
Alignment gi|XP_535510.2| PREDICTED: similar to Peptidyl-prolyl cis-trans... 202 6e-52
Alignment gi|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase ... 202 6e-52
Alignment gi|XP_531768.2| PREDICTED: similar to RAN-binding protein 2-lik... 195 7e-50
>ref|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (PPIase) (Rotamase) (Cyclophilin
F) [Canis familiaris].
Length = 152
Score = 269 bits (687), Expect = 5e-72
Identities = 127/144 (88%), Positives = 131/144 (90%)
Frame = +2
Query: 275 LELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS 454
L+LKADVVPKTAENFRALCTGEKGFGYKGS+FHRVIPSFMCQAGDFTNHNGTGGKSIYGS
Sbjct: 9 LQLKADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPSFMCQAGDFTNHNGTGGKSIYGS 68
Query: 455 RFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKK 634
RFPDENF LKHVGPGVLSMANAGPNTNGSQFFICT+KTDWLDGKHVVFGHVKEGMDVVKK
Sbjct: 69 RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTVKTDWLDGKHVVFGHVKEGMDVVKK 128
Query: 635 IEXXXXXXXXXXXXIVITDCGQLS 706
IE I+ITDCGQLS
Sbjct: 129 IESFGSRSGKTSKKIIITDCGQLS 152
>ref|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 164
Score = 234 bits (598), Expect = 1e-61
Identities = 109/162 (67%), Positives = 124/162 (76%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP ++ D+ DG+PLGRV EL AD VPKTAEN RAL GEKGF Y+GS FHR+IP FMC
Sbjct: 3 NPTMFFDIAMDGEPLGRVSFELFADKVPKTAENSRALSMGEKGFSYEGSGFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F D+NF LKH GPG+LSMANAGPNTN SQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNRSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGM++V+ +E I I DCGQ+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164
>ref|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
2 [Canis familiaris].
Length = 301
Score = 234 bits (596), Expect = 2e-61
Identities = 105/161 (65%), Positives = 126/161 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMC
Sbjct: 139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 198
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWL
Sbjct: 199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 258
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHVVFG V EG+DV+++IE ++I DCG+
Sbjct: 259 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299
>ref|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 161
Score = 231 bits (589), Expect = 1e-60
Identities = 109/156 (69%), Positives = 121/156 (77%)
Frame = +2
Query: 236 DVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFT 415
D+ D +PLG V EL AD VPKTAENF AL TGEKGFGYKGS FHR+IP FMCQ GDFT
Sbjct: 6 DITVDCEPLGPVSFELFADRVPKTAENFCALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT 65
Query: 416 NHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVV 595
HNGTGGKSIYG +F D+NF LKH GPG+LSMANAGPNTNGSQFFICT KT+WLDGKHVV
Sbjct: 66 RHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVV 125
Query: 596 FGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
FG VKEGM++V+ +E I I DCGQ+
Sbjct: 126 FGKVKEGMNIVEAMEASGPRNGKTSKKITIADCGQI 161
>ref|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
3 [Canis familiaris].
Length = 288
Score = 229 bits (585), Expect = 3e-60
Identities = 103/158 (65%), Positives = 124/158 (78%)
Frame = +2
Query: 227 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 406
VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMCQ G
Sbjct: 129 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGG 188
Query: 407 DFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 586
DFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWLDGK
Sbjct: 189 DFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGK 248
Query: 587 HVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
HVVFG V EG+DV+++IE ++I DCG+
Sbjct: 249 HVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 286
>ref|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 239
Score = 227 bits (579), Expect = 2e-59
Identities = 106/145 (73%), Positives = 117/145 (80%)
Frame = +2
Query: 269 VVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIY 448
+VL+L AD VPKTAENFRAL TGEKGFGYKGS FHR+IP FMCQ GDFT HNGTGGKSIY
Sbjct: 95 LVLQLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIY 154
Query: 449 GSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVV 628
G +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WLDGKHVVFG VKEGM++V
Sbjct: 155 GEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 214
Query: 629 KKIEXXXXXXXXXXXXIVITDCGQL 703
+ +E I I DCGQ+
Sbjct: 215 EAMERFGSRNGKTSKKITIADCGQI 239
>ref|XP_852435.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 172
Score = 226 bits (576), Expect = 4e-59
Identities = 104/141 (73%), Positives = 117/141 (82%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ DG+PLGR EL AD VPK+AENFRAL TGEKGFGYKGS FH +IP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRGSFELFADKVPKSAENFRALSTGEKGFGYKGSRFHGIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTG KSI+G + DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGRKSIHGEKSDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIE 640
DGKHVVFG VKEGM++V+ +E
Sbjct: 123 DGKHVVFGKVKEGMNIVEAME 143
>ref|XP_535510.2| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase B
precursor (PPIase) (Rotamase) (Cyclophilin B)
(S-cyclophilin) (SCYLP) (CYP-S1) isoform 1 [Canis
familiaris].
Length = 173
Score = 202 bits (514), Expect = 6e-52
Identities = 100/160 (62%), Positives = 115/160 (71%), Gaps = 1/160 (0%)
Frame = +2
Query: 227 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 406
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q G
Sbjct: 3 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGG 62
Query: 407 DFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 586
DFT +GTGGKSIYG RFPDENFKLKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 63 DFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 122
Query: 587 HVVFGHVKEGMDVVKKIE-XXXXXXXXXXXXIVITDCGQL 703
HVVFG V EGM+VV+K+E + I DCG++
Sbjct: 123 HVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVTIADCGKI 162
>ref|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase B precursor isoform
2 [Canis familiaris].
Length = 216
Score = 202 bits (514), Expect = 6e-52
Identities = 100/160 (62%), Positives = 115/160 (71%), Gaps = 1/160 (0%)
Frame = +2
Query: 227 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 406
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q G
Sbjct: 46 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGG 105
Query: 407 DFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 586
DFT +GTGGKSIYG RFPDENFKLKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 106 DFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 165
Query: 587 HVVFGHVKEGMDVVKKIE-XXXXXXXXXXXXIVITDCGQL 703
HVVFG V EGM+VV+K+E + I DCG++
Sbjct: 166 HVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVTIADCGKI 205
>ref|XP_531768.2| PREDICTED: similar to RAN-binding protein 2-like 1 isoform 1 [Canis
familiaris].
Length = 2235
Score = 195 bits (496), Expect = 7e-50
Identities = 90/132 (68%), Positives = 107/132 (81%)
Frame = +2
Query: 245 ADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHN 424
AD +PLGR+ +EL +++VP TAENFRALCTGEKGFG+K S FHRVIP ++CQ GD T H+
Sbjct: 2029 ADDEPLGRITMELFSNIVPLTAENFRALCTGEKGFGFKNSIFHRVIPDYVCQGGDITKHD 2088
Query: 425 GTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGH 604
GTGG+SIYG +F DENF +KH GPG+LSMAN G +TN SQFFI K + LD KHVVFG
Sbjct: 2089 GTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGRDTNNSQFFITLKKAEHLDFKHVVFGF 2148
Query: 605 VKEGMDVVKKIE 640
VK+GMD VKKIE
Sbjct: 2149 VKDGMDTVKKIE 2160
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,728,320
Number of extensions: 1512091
Number of successful extensions: 5825
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 5770
Number of HSP's successfully gapped: 40
Length of query: 441
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 335
Effective length of database: 15,340,888
Effective search space: 5139197480
Effective search space used: 5139197480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003200
(1325 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 308 1e-83
Alignment gi|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sap... 251 1e-66
Alignment gi|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1... 234 2e-61
Alignment gi|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isofor... 226 5e-59
Alignment gi|NP_982281.1| peptidyl-prolyl cis-trans isomerase E isoform 2... 226 5e-59
Alignment gi|NP_006258.3| E3 SUMO-protein ligase RanBP2 [Homo sapiens]. 220 2e-57
Alignment gi|NP_001129261.1| peptidylprolyl cis-trans isomerase A-like 4A... 219 4e-57
Alignment gi|NP_001137355.1| peptidylprolyl cis-trans isomerase A-like 4A... 219 4e-57
Alignment gi|NP_839944.1| peptidylprolyl cis-trans isomerase A-like 4B [H... 219 4e-57
Alignment gi|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G... 219 6e-57
>ref|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor
[Homo sapiens].
Length = 207
Score = 308 bits (788), Expect = 1e-83
Identities = 151/182 (82%), Positives = 154/182 (84%)
Frame = +2
Query: 161 ATRACXXXXXXXXXXXXARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 340
A RAC + NPLVYLDV A+G+PLGRVVLELKADVVPKTAENFRALCTGE
Sbjct: 26 AARACSKGSGDPSSSSSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGE 85
Query: 341 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA 520
KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENF LKHVGPGVLSMANA
Sbjct: 86 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANA 145
Query: 521 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE IVITDCGQ
Sbjct: 146 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQ 205
Query: 701 LS 706
LS
Sbjct: 206 LS 207
>ref|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sapiens].
Length = 165
Score = 251 bits (641), Expect = 1e-66
Identities = 117/162 (72%), Positives = 128/162 (79%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ DG+PLGRV EL AD VPKTAENFRAL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGM++V+ +E I I DCGQL
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>ref|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1 [Homo sapiens].
Length = 301
Score = 234 bits (596), Expect = 2e-61
Identities = 105/161 (65%), Positives = 126/161 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMC
Sbjct: 139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 198
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWL
Sbjct: 199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 258
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHVVFG V EG+DV+++IE ++I DCG+
Sbjct: 259 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299
>ref|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isoform 4 [Homo sapiens].
Length = 314
Score = 226 bits (575), Expect = 5e-59
Identities = 101/141 (71%), Positives = 119/141 (84%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMC
Sbjct: 139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 198
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWL
Sbjct: 199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 258
Query: 578 DGKHVVFGHVKEGMDVVKKIE 640
DGKHVVFG V EG+DV+++IE
Sbjct: 259 DGKHVVFGEVTEGLDVLRQIE 279
>ref|NP_982281.1| peptidyl-prolyl cis-trans isomerase E isoform 2 [Homo sapiens].
Length = 296
Score = 226 bits (575), Expect = 5e-59
Identities = 101/141 (71%), Positives = 119/141 (84%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMC
Sbjct: 139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 198
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWL
Sbjct: 199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 258
Query: 578 DGKHVVFGHVKEGMDVVKKIE 640
DGKHVVFG V EG+DV+++IE
Sbjct: 259 DGKHVVFGEVTEGLDVLRQIE 279
>ref|NP_006258.3| E3 SUMO-protein ligase RanBP2 [Homo sapiens].
Length = 3224
Score = 220 bits (561), Expect = 2e-57
Identities = 103/162 (63%), Positives = 123/162 (75%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP+V+ DV ADG+PLGR+ +EL +++VP+TAENFRALCTGEKGFG+K S FHRVIP F+C
Sbjct: 3063 NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVC 3122
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GD T H+GTGG+SIYG +F DENF +KH GPG+LSMAN G NTN SQF I K + L
Sbjct: 3123 QGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHL 3182
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
D KHVVFG VK+GMD VKKIE I IT+CGQ+
Sbjct: 3183 DFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224
>ref|NP_001129261.1| peptidylprolyl cis-trans isomerase A-like 4A/B/C [Homo sapiens].
Length = 164
Score = 219 bits (558), Expect = 4e-57
Identities = 102/161 (63%), Positives = 119/161 (73%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
N +V+ D+ DG+PLGR+ ++L AD + KTAENFRAL TGEKGF YKGS FHR+IP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTG KSIYG +F DEN KH G G+LSMANAGPNTNGSQFFIC KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHV FG VKE +++V+ +E I I DCGQ
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
>ref|NP_001137355.1| peptidylprolyl cis-trans isomerase A-like 4A/B/C [Homo sapiens].
Length = 164
Score = 219 bits (558), Expect = 4e-57
Identities = 102/161 (63%), Positives = 119/161 (73%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
N +V+ D+ DG+PLGR+ ++L AD + KTAENFRAL TGEKGF YKGS FHR+IP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTG KSIYG +F DEN KH G G+LSMANAGPNTNGSQFFIC KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHV FG VKE +++V+ +E I I DCGQ
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
>ref|NP_839944.1| peptidylprolyl cis-trans isomerase A-like 4B [Homo sapiens].
Length = 164
Score = 219 bits (558), Expect = 4e-57
Identities = 102/161 (63%), Positives = 119/161 (73%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
N +V+ D+ DG+PLGR+ ++L AD + KTAENFRAL TGEKGF YKGS FHR+IP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTG KSIYG +F DEN KH G G+LSMANAGPNTNGSQFFIC KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHV FG VKE +++V+ +E I I DCGQ
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
>ref|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G [Homo sapiens].
Length = 164
Score = 219 bits (557), Expect = 6e-57
Identities = 101/161 (62%), Positives = 120/161 (74%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
N +++ D+ DG+PLGR+ ++ AD +PKTAENFRAL TGEKGF YKGS FHR+IP FMC
Sbjct: 3 NSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT+ NGTG KSIYG +F DEN KH G G+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHV FG VKE +++V+ +E I I DCGQ
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,820,086
Number of extensions: 1492146
Number of successful extensions: 5610
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 5572
Number of HSP's successfully gapped: 38
Length of query: 441
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 335
Effective length of database: 14,802,980
Effective search space: 4958998300
Effective search space used: 4958998300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003200
(1325 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 308 6e-84
Alignment gi|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musc... 249 3e-66
Alignment gi|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 241 9e-64
Alignment gi|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 241 9e-64
Alignment gi|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musc... 233 3e-61
Alignment gi|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus]. 223 3e-58
Alignment gi|NP_035279.2| peptidyl-prolyl cis-trans isomerase B precursor... 201 1e-51
Alignment gi|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musc... 199 4e-51
Alignment gi|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isofor... 188 9e-48
Alignment gi|NP_082953.1| peptidyl-prolyl cis-trans isomerase H isoform 1... 188 9e-48
>ref|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Mus
musculus].
Length = 206
Score = 308 bits (789), Expect = 6e-84
Identities = 148/163 (90%), Positives = 150/163 (92%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIP+FMC
Sbjct: 44 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMC 103
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
QAGDFTNHNGTGG+SIYGSRFPDENF LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL
Sbjct: 104 QAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 163
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQLS 706
DGKHVVFGHVKEGMDVVKKIE IVITDCGQLS
Sbjct: 164 DGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206
>ref|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musculus].
Length = 164
Score = 249 bits (636), Expect = 3e-66
Identities = 116/162 (71%), Positives = 130/162 (80%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ AD +PLGRV EL AD VPKTAENFRAL TGEKGFGYKGS+FHR+IP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGG+SIYG +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGM++V+ +E I I+DCGQL
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164
>ref|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 241 bits (615), Expect = 9e-64
Identities = 113/162 (69%), Positives = 127/162 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ AD +PLGRV EL AD VPKTAENF+AL TGEKGFGYKGS+FHR+IP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGG+SIYG +F DENF LKH GPG+LSMANAGPNTN SQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVF VKEGM+ V+ +E I I+DCGQL
Sbjct: 123 DGKHVVFEKVKEGMNTVEAMEHFGSRNGKTSKKITISDCGQL 164
>ref|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 241 bits (615), Expect = 9e-64
Identities = 113/162 (69%), Positives = 127/162 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ AD +PLGRV EL AD VPKTAENF+AL TGEKGFGYKGS+FHR+IP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGG+SIYG +F DENF LKH GPG+LSMANAGPNTN SQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVF VKEGM+ V+ +E I I+DCGQL
Sbjct: 123 DGKHVVFEKVKEGMNTVEAMEHFGSRNGKTSKKITISDCGQL 164
>ref|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musculus].
Length = 301
Score = 233 bits (594), Expect = 3e-61
Identities = 105/161 (65%), Positives = 126/161 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMC
Sbjct: 139 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 198
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWL
Sbjct: 199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 258
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHVVFG V EG+DV+++IE ++I DCG+
Sbjct: 259 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299
>ref|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus].
Length = 3053
Score = 223 bits (568), Expect = 3e-58
Identities = 104/162 (64%), Positives = 125/162 (77%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP+V+ DV ADG+PLGR+++EL +++VP+TAENFRALCTGEKGFG+K S FHRV+P F+C
Sbjct: 2892 NPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFGFKNSIFHRVVPDFIC 2951
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GD T +NGTGG+SIYG +F DENF LKH GPG+LSMAN G NTN SQFFI K + L
Sbjct: 2952 QGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHL 3011
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
D KHVVFG VK+GMD V+KIE I IT+CGQL
Sbjct: 3012 DFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053
>ref|NP_035279.2| peptidyl-prolyl cis-trans isomerase B precursor [Mus musculus].
Length = 216
Score = 201 bits (511), Expect = 1e-51
Identities = 97/138 (70%), Positives = 107/138 (77%)
Frame = +2
Query: 227 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 406
VY D+ + +GRVV L VPKT +NF AL TGEKGFGYK S FHRVI FM Q G
Sbjct: 46 VYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGG 105
Query: 407 DFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 586
DFT +GTGGKSIYG RFPDENFKLKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 106 DFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGK 165
Query: 587 HVVFGHVKEGMDVVKKIE 640
HVVFG V EGMDVV+K+E
Sbjct: 166 HVVFGKVLEGMDVVRKVE 183
>ref|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musculus].
Length = 370
Score = 199 bits (506), Expect = 4e-51
Identities = 99/172 (57%), Positives = 119/172 (69%), Gaps = 8/172 (4%)
Frame = +2
Query: 212 ARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 367
++NP V+ DV G+ +GR+VLEL AD+VPKTAENFRALCTGEKG G +KG
Sbjct: 13 SKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCP 72
Query: 368 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQF 547
FHR+I FM Q GDF+N NGTGG+SIYG +F DENF KH G+LSMANAGPNTNGSQF
Sbjct: 73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQF 132
Query: 548 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
FI T+ T LDGKHVVFG V +G+ V + +E VI +CG+L
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184
>ref|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isoform 1 [Mus musculus].
Length = 177
Score = 188 bits (477), Expect = 9e-48
Identities = 96/168 (57%), Positives = 115/168 (68%), Gaps = 6/168 (3%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 382
NP+V+ DV GQ +GR+ +EL ADVVPKTAENFR CTGE GYKGSTFHRVI
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 383 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTI 562
FM Q GDF N +GTG SIY F DENFKL+H PG+LSMAN+GP+TNG QFFI
Sbjct: 70 KDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCS 129
Query: 563 KTDWLDGKHVVFGHVKEGMDVVKKIE-XXXXXXXXXXXXIVITDCGQL 703
K DWLDGKHVVFG + +G+ V++KIE +VI+ CG++
Sbjct: 130 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>ref|NP_082953.1| peptidyl-prolyl cis-trans isomerase H isoform 1 [Mus musculus].
Length = 177
Score = 188 bits (477), Expect = 9e-48
Identities = 96/168 (57%), Positives = 115/168 (68%), Gaps = 6/168 (3%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 382
NP+V+ DV GQ +GR+ +EL ADVVPKTAENFR CTGE GYKGSTFHRVI
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 383 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTI 562
FM Q GDF N +GTG SIY F DENFKL+H PG+LSMAN+GP+TNG QFFI
Sbjct: 70 KDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCS 129
Query: 563 KTDWLDGKHVVFGHVKEGMDVVKKIE-XXXXXXXXXXXXIVITDCGQL 703
K DWLDGKHVVFG + +G+ V++KIE +VI+ CG++
Sbjct: 130 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,723,143
Number of extensions: 1249933
Number of successful extensions: 4669
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4633
Number of HSP's successfully gapped: 24
Length of query: 441
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 337
Effective length of database: 12,493,815
Effective search space: 4210415655
Effective search space used: 4210415655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003200
(1325 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 322 3e-88
Alignment gi|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 322 3e-88
Alignment gi|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 301 5e-82
Alignment gi|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scro... 250 1e-66
Alignment gi|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 234 8e-62
Alignment gi|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Su... 219 3e-57
Alignment gi|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 195 4e-50
Alignment gi|XP_001927082.3| PREDICTED: peptidyl-prolyl cis-trans isomera... 190 1e-48
Alignment gi|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 186 3e-47
Alignment gi|XP_003356541.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 186 3e-47
>ref|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 207
Score = 322 bits (825), Expect = 3e-88
Identities = 158/182 (86%), Positives = 158/182 (86%)
Frame = +2
Query: 161 ATRACXXXXXXXXXXXXARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 340
ATRAC ARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE
Sbjct: 26 ATRACSSGGDSGDPSSSARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 85
Query: 341 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA 520
KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA
Sbjct: 86 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA 145
Query: 521 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE IVITDCGQ
Sbjct: 146 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 205
Query: 701 LS 706
LS
Sbjct: 206 LS 207
>ref|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F, mitochondrial
[Sus scrofa].
Length = 207
Score = 322 bits (825), Expect = 3e-88
Identities = 158/182 (86%), Positives = 158/182 (86%)
Frame = +2
Query: 161 ATRACXXXXXXXXXXXXARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 340
ATRAC ARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE
Sbjct: 26 ATRACSSGGDSGDPSSSARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 85
Query: 341 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA 520
KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA
Sbjct: 86 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA 145
Query: 521 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE IVITDCGQ
Sbjct: 146 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 205
Query: 701 LS 706
LS
Sbjct: 206 LS 207
>ref|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 248
Score = 301 bits (771), Expect = 5e-82
Identities = 149/182 (81%), Positives = 152/182 (83%)
Frame = +2
Query: 161 ATRACXXXXXXXXXXXXARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 340
ATRAC ARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE
Sbjct: 67 ATRACSSGGDSGDPSSSARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE 126
Query: 341 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANA 520
KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE+ ++ GVLSMANA
Sbjct: 127 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDESLVIQFAFAGVLSMANA 186
Query: 521 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIE IVITDCGQ
Sbjct: 187 GPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 246
Query: 701 LS 706
LS
Sbjct: 247 LS 248
>ref|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scrofa].
Length = 164
Score = 250 bits (639), Expect = 1e-66
Identities = 116/162 (71%), Positives = 128/162 (79%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP V+ D+ DG+PLGRV EL AD VPKTAENFRAL TGEKGFGYKGS FHR+IP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFT HNGTGGKSIYG +F DENF LKH GPG+LSMANAGPNTNGSQFFICT KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
DGKHVVFG VKEGM++V+ +E I I DCGQ+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164
>ref|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Sus scrofa].
Length = 301
Score = 234 bits (597), Expect = 8e-62
Identities = 105/161 (65%), Positives = 127/161 (78%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+FHR+IP FMC
Sbjct: 139 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 198
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWL
Sbjct: 199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 258
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQ 700
DGKHVVFG V EG+DV+++IE ++I+DCG+
Sbjct: 259 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299
>ref|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Sus scrofa].
Length = 659
Score = 219 bits (558), Expect = 3e-57
Identities = 104/162 (64%), Positives = 122/162 (75%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 397
NP+V+ DV AD QPLGR+ +EL ++VVP+TAENFRALCTGEKGFGYK S FHRVIP F+C
Sbjct: 497 NPVVFFDVCADDQPLGRITMELFSNVVPQTAENFRALCTGEKGFGYKHSIFHRVIPDFVC 556
Query: 398 QAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 577
Q GD T H+G+GG+SIYG +F DENF +KH GPG+LSMAN G NTN SQFFI K + L
Sbjct: 557 QGGDITKHDGSGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQNTNNSQFFITLKKAEHL 616
Query: 578 DGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
D KHVVFG VK+GMD VKKIE I I +CGQ+
Sbjct: 617 DFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRITIVECGQI 658
>ref|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Sus scrofa].
Length = 370
Score = 195 bits (496), Expect = 4e-50
Identities = 99/170 (58%), Positives = 116/170 (68%), Gaps = 8/170 (4%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFH 373
NP V+ DV G+ +GR+VLEL AD+VPKTAENFRALCTGEKG G +KG FH
Sbjct: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFH 74
Query: 374 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFI 553
R+I FM Q GDF+N NGTGG+SIYG +F DENF KH G+LSMANAG NTNGSQFFI
Sbjct: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGCNTNGSQFFI 134
Query: 554 CTIKTDWLDGKHVVFGHVKEGMDVVKKIEXXXXXXXXXXXXIVITDCGQL 703
T+ T LDGKHVVFG V +GM V + +E VI +CG+L
Sbjct: 135 TTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLCVIAECGEL 184
>ref|XP_001927082.3| PREDICTED: peptidyl-prolyl cis-trans isomerase B [Sus scrofa].
Length = 243
Score = 190 bits (483), Expect = 1e-48
Identities = 92/131 (70%), Positives = 101/131 (77%)
Frame = +2
Query: 227 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 406
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q G
Sbjct: 46 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGG 105
Query: 407 DFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 586
DFT +GTGGKSIYG RFPDENFKLKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 106 DFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 165
Query: 587 HVVFGHVKEGM 619
HVVFG V EGM
Sbjct: 166 HVVFGKVLEGM 176
>ref|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like isoform 3
[Sus scrofa].
Length = 177
Score = 186 bits (471), Expect = 3e-47
Identities = 95/168 (56%), Positives = 114/168 (67%), Gaps = 6/168 (3%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 382
NP+V+ DV GQ +GR+ +EL ADVVPKTAENFR CTGE GYKGSTFHRVI
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 383 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTI 562
FM Q GDF N +GTG SIY F D NFKL+H PG+LSMAN+GP+TNG QFFI
Sbjct: 70 KDFMIQGGDFVNGDGTGVASIYRGPFADXNFKLRHSAPGLLSMANSGPSTNGCQFFITCS 129
Query: 563 KTDWLDGKHVVFGHVKEGMDVVKKIE-XXXXXXXXXXXXIVITDCGQL 703
K DWLDGKHVVFG + +G+ V++KIE +VI+ CG++
Sbjct: 130 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>ref|XP_003356541.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Sus scrofa].
Length = 177
Score = 186 bits (471), Expect = 3e-47
Identities = 95/168 (56%), Positives = 114/168 (67%), Gaps = 6/168 (3%)
Frame = +2
Query: 218 NPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGE-----KGFGYKGSTFHRVI 382
NP+V+ DV GQ +GR+ +EL ADVVPKTAENFR CTGE GYKGSTFHRVI
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 383 PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTI 562
FM Q GDF N +GTG SIY F D NFKL+H PG+LSMAN+GP+TNG QFFI
Sbjct: 70 KDFMIQGGDFVNGDGTGVASIYRGPFADXNFKLRHSAPGLLSMANSGPSTNGCQFFITCS 129
Query: 563 KTDWLDGKHVVFGHVKEGMDVVKKIE-XXXXXXXXXXXXIVITDCGQL 703
K DWLDGKHVVFG + +G+ V++KIE +VI+ CG++
Sbjct: 130 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,329,222
Number of extensions: 951642
Number of successful extensions: 3795
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3764
Number of HSP's successfully gapped: 28
Length of query: 441
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,804,438
Effective search space: 2984704482
Effective search space used: 2984704482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003200
(1325 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1469 0.0
gb|GL896312.2| Sus scrofa unplaced genomic scaffold ChrUScaf4196 1461 0.0
Sscrofa_Chr01 98 1e-17
Sscrofa_Chr18 78 1e-11
Sscrofa_Chr06 78 1e-11
Sscrofa_Chr03 62 8e-07
>Sscrofa_Chr14
|| Length = 153851969
Score = 1469 bits (741), Expect = 0.0
Identities = 750/753 (99%)
Strand = Plus / Plus
Query: 573 ggctggatggcaaacacgttgtgtttggccatgtcaaagagggcatggatgttgtgaaga 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340252 ggctggatggcaaacacgttgtgtttggccatgtcaaagagggcatggatgttgtgaaga 88340311
Query: 633 aaatagaatctttcggctccaagagtgggaagacatccaagaaaattgtcatcacagact 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340312 aaatagaatctttcggctccaagagtgggaagacatccaagaaaattgtcatcacagact 88340371
Query: 693 gtggccagttgagctaacctgcagtggccagggcgctaggctggtggcagctgcagcaca 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340372 gtggccagttgagctaacctgcagtggccagggcgctaggctggtggcagctgcagcaca 88340431
Query: 753 ggagtggactcacccaggtggctgcctcagactcccagccaggggcccttggagttgcct 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340432 ggagtggactcacccaggtggctgcctcagactcccagccaggggcccttggagttgcct 88340491
Query: 813 gggcttgctccaccgtctctgtgctccaggaaggcctcagatgaatatcaaacctcacag 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340492 gggcttgctccaccgtctctgtgctccaggaaggcctcagatgaatatcaaacctcacag 88340551
Query: 873 gacacttcaggctgcttccccagtgcttggccttcctcagcaccccgtccctggacaccc 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340552 gacacttcaggctgcttccccagtgcttggccttcctcagcaccccgtccctggacaccc 88340611
Query: 933 gtcatggctactgtcaccgctccttgtctgattgcctgacccaagttcacctgtgccttg 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340612 gtcatggctactgtcaccgctccttgtctgattgcctgacccaagttcacctgtgccttg 88340671
Query: 993 gacatcaggagtgatgatggaatagctctgagggtagtttctaccttttctttgaccaag 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340672 gacatcaggagtgatgatggaatagctctgagggtagtttctaccttttctttgaccaag 88340731
Query: 1053 gggggaagccggttcctgtaaagggctgtcgtatctgtttaatgtcatctccctaattgg 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340732 gggggaagccggttcctgtaaagggctgtcgtatctgtttaatgtcatctccctaattgg 88340791
Query: 1113 aataatttaactaataagactgcctggagttgaagctgagacaccaactacaccaggctg 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340792 aataatttaactaataagactgcctggagttgaagctgagacaccaactacaccaggctg 88340851
Query: 1173 tggtgtgacctgagtttgtggcacaggctacagacccagagcttaacctttggagcacga 1232
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 88340852 tggtgtgacctgagtttgtggcacaggctacagacccagagcttagcctttggagcacga 88340911
Query: 1233 tccaggcttttgtgaaagtcctggggctgataacttttatcctagccactgtgaatccca 1292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88340912 tccaggcttttgtgaaggtcctggggctgataacttttatcctagccactgtgaatccca 88340971
Query: 1293 ctggtctgctgctcttggattgggggagaaccc 1325
||||||||||||||||||||| |||||||||||
Sbjct: 88340972 ctggtctgctgctcttggatttggggagaaccc 88341004
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 gactcggccgctctgggcgtgcgtggttctctttgctgtagtctccgcttgtcctggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88334149 gactcggccgctctgggcgtgcgtggttctctttgctgtagtctccgcttgtcctggagc 88334208
Query: 61 tcttgcactccgacccgcgctcaccatgctggcgctgcgcagcagtcc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88334209 tcttgcactccgacccgcgctcaccatgctggcgctgcgcagcagtcc 88334256
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 173 tgcagcagcggcggcgactccggtgacccgtcctcttccgccaggaacccgcttgtgtac 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88334321 tgcagcagcggcggcgactccggtgacccgtcctcttccgccaggaacccgcttgtgtac 88334380
Query: 233 ctggacgtgggcgcggacgggcagccgctgggccgcgtggttctggag 280
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88334381 ctggacgtgggcgcggacgggcagccgctgggccgcgtggttctggag 88334428
Score = 196 bits (99), Expect = 2e-47
Identities = 102/103 (99%)
Strand = Plus / Plus
Query: 398 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatctacggaagccgt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88338059 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatctacggaagccgt 88338118
Query: 458 tttcctgacgagaacttcaaactcaagcacgtggggcccggtg 500
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 88338119 tttcctgatgagaacttcaaactcaagcacgtggggcccggtg 88338161
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 309 cagagaacttcagagccctgtgcaccggggagaagggcttcggctacaaaggctccacgt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88336200 cagagaacttcagagccctgtgcaccggggagaagggcttcggctacaaaggctccacgt 88336259
Query: 369 ttcacagagtcattccatccttcatgtgccagg 401
|||||||||||||||||||||||||||||||||
Sbjct: 88336260 ttcacagagtcattccatccttcatgtgccagg 88336292
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 497 ggtgtcctgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88338559 ggtgtcctgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgc 88338618
Query: 557 accataaagacagactgg 574
||||||||||||||||||
Sbjct: 88338619 accataaagacagactgg 88338636
Score = 73.8 bits (37), Expect = 2e-10
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 504 tgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgcaccataa 563
|||||||||||||||| ||||||||||| || || |||||||| ||||| ||||| |
Sbjct: 110664906 tgtccatggcaaatgctggccccaacacaaatggttcccagtttttcatctgcactgcca 110664847
Query: 564 agacagactggctggatggcaaacacgttgtgtttggccatgtcaaagagggcatggatg 623
|||| || ||| ||||||||||| | || || |||||| | || |||||||||||| ||
Sbjct: 110664846 agactgagtggttggatggcaaatatgtggtctttggcaaagtgaaagagggcatgaata 110664787
Query: 624 ttgtg 628
|||||
Sbjct: 110664786 ttgtg 110664782
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 279 agctgaaggcagatgtcgtcccaaagacagcag 311
|||||||||||||||||||||||||||||||||
Sbjct: 88335686 agctgaaggcagatgtcgtcccaaagacagcag 88335718
>gb|GL896312.2| Sus scrofa unplaced genomic scaffold ChrUScaf4196
Length = 122358
Score = 1461 bits (737), Expect = 0.0
Identities = 749/753 (99%)
Strand = Plus / Plus
Query: 573 ggctggatggcaaacacgttgtgtttggccatgtcaaagagggcatggatgttgtgaaga 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105577 ggctggatggcaaacacgttgtgtttggccatgtcaaagagggcatggatgttgtgaaga 105636
Query: 633 aaatagaatctttcggctccaagagtgggaagacatccaagaaaattgtcatcacagact 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105637 aaatagaatctttcggctccaagagtgggaagacatccaagaaaattgtcatcacagact 105696
Query: 693 gtggccagttgagctaacctgcagtggccagggcgctaggctggtggcagctgcagcaca 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105697 gtggccagttgagctaacctgcagtggccagggcgctaggctggtggcagctgcagcaca 105756
Query: 753 ggagtggactcacccaggtggctgcctcagactcccagccaggggcccttggagttgcct 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105757 ggagtggactcacccaggtggctgcctcagactcccagccaggggcccttggagttgcct 105816
Query: 813 gggcttgctccaccgtctctgtgctccaggaaggcctcagatgaatatcaaacctcacag 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105817 gggcttgctccaccgtctctgtgctccaggaaggcctcagatgaatatcaaacctcacag 105876
Query: 873 gacacttcaggctgcttccccagtgcttggccttcctcagcaccccgtccctggacaccc 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105877 gacacttcaggctgcttccccagtgcttggccttcctcagcaccccgtccctggacaccc 105936
Query: 933 gtcatggctactgtcaccgctccttgtctgattgcctgacccaagttcacctgtgccttg 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105937 gtcatggctactgtcaccgctccttgtctgattgcctgacccaagttcacctgtgccttg 105996
Query: 993 gacatcaggagtgatgatggaatagctctgagggtagtttctaccttttctttgaccaag 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105997 gacatcaggagtgatgatggaatagctctgagggtagtttctaccttttctttgaccaag 106056
Query: 1053 gggggaagccggttcctgtaaagggctgtcgtatctgtttaatgtcatctccctaattgg 1112
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 106057 gggggaagccggttcctgtaaagggctgttgtatctgtttaatgtcatctccctaattgg 106116
Query: 1113 aataatttaactaataagactgcctggagttgaagctgagacaccaactacaccaggctg 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106117 aataatttaactaataagactgcctggagttgaagctgagacaccaactacaccaggctg 106176
Query: 1173 tggtgtgacctgagtttgtggcacaggctacagacccagagcttaacctttggagcacga 1232
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 106177 tggtgtgacctgagtttgtggcacaggctacagacccagagcttagcctttggagcacga 106236
Query: 1233 tccaggcttttgtgaaagtcctggggctgataacttttatcctagccactgtgaatccca 1292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106237 tccaggcttttgtgaaggtcctggggctgataacttttatcctagccactgtgaatccca 106296
Query: 1293 ctggtctgctgctcttggattgggggagaaccc 1325
||||||||||||||||||||| |||||||||||
Sbjct: 106297 ctggtctgctgctcttggatttggggagaaccc 106329
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 173 tgcagcagcggcggcgactccggtgacccgtcctcttccgccaggaacccgcttgtgtac 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99404 tgcagcagcggcggcgactccggtgacccgtcctcttccgccaggaacccgcttgtgtac 99463
Query: 233 ctggacgtgggcgcggacgggcagccgctgggccgcgtggttctggag 280
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99464 ctggacgtgggcgcggacgggcagccgctgggccgcgtggttctggag 99511
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 309 cagagaacttcagagccctgtgcaccggggagaagggcttcggctacaaaggctccacgt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101395 cagagaacttcagagccctgtgcaccggggagaagggcttcggctacaaaggctccacgt 101454
Query: 369 ttcacagagtcattccatccttcatgtgccagg 401
|||||||||||||||||||||||||||||||||
Sbjct: 101455 ttcacagagtcattccatccttcatgtgccagg 101487
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 497 ggtgtcctgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103794 ggtgtcctgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgc 103853
Query: 557 accataaagacagactgg 574
||||||||||||||||||
Sbjct: 103854 accataaagacagactgg 103871
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 398 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatctacggaagccgt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103254 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatctacggaagccgt 103313
Query: 458 tttcctgacgag 469
||||||||||||
Sbjct: 103314 tttcctgacgag 103325
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 279 agctgaaggcagatgtcgtcccaaagacagcag 311
|||||||||||||||||||||||||||||||||
Sbjct: 100881 agctgaaggcagatgtcgtcccaaagacagcag 100913
>Sscrofa_Chr01
|| Length = 315321322
Score = 97.6 bits (49), Expect = 1e-17
Identities = 106/125 (84%)
Strand = Plus / Plus
Query: 504 tgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgcaccataa 563
|||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |
Sbjct: 227347381 tgtccatggcaaatgctggccccaacacaaacggttcccagtttttcatttgcactgcca 227347440
Query: 564 agacagactggctggatggcaaacacgttgtgtttggccatgtcaaagagggcatggatg 623
|||| || ||| ||||||||||||| || || |||||| | || |||||||||||| ||
Sbjct: 227347441 agactgagtggttggatggcaaacatgtggtctttggcaaagtgaaagagggcatgaata 227347500
Query: 624 ttgtg 628
|||||
Sbjct: 227347501 ttgtg 227347505
>Sscrofa_Chr18
|| Length = 61220071
Score = 77.8 bits (39), Expect = 1e-11
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 504 tgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgcac 558
|||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 55289490 tgtccatggcaaatgctggccccaacacaaacggttcccagtttttcatttgcac 55289544
>Sscrofa_Chr06
|| Length = 157765593
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 389 ttcatgtgccaggccggcgacttcaccaaccacaacggcacaggagggaagtccatcta 447
||||||||||||| |||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 88461291 ttcatgtgccagggcggcgatttcaccaaccacaacggcactgggggcaagtccatcta 88461233
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 389 ttcatgtgccaggccggcgacttcaccaaccacaacggcacaggagggaagtccatcta 447
||||||||||||| |||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 88650355 ttcatgtgccagggcggcgatttcaccaaccacaacggcactgggggcaagtccatcta 88650413
>Sscrofa_Chr03
|| Length = 144787322
Score = 61.9 bits (31), Expect = 8e-07
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 311 gagaacttcagagccctgtgcaccggggagaagggcttcggctacaa 357
|||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct: 49695636 gagaacttcagagcactgtgcactggagagaagggcttcggttacaa 49695590
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 501 tcctgtccatggcaaatgcaggccccaacaccaacggctcccagttcttcatttgcac 558
|||||||||| |||||||| ||||||||||| ||| | |||||||| ||||| |||||
Sbjct: 81837088 tcctgtccatagcaaatgctggccccaacacaaacagttcccagtttttcatctgcac 81837031
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,755,590
Number of extensions: 231
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 20
Length of query: 1325
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1304
Effective length of database: 2,808,413,156
Effective search space: 3662170755424
Effective search space used: 3662170755424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)