Animal-Genome cDNA 20110601C-003206


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003206
         (1044 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069242.1| G protein pathway suppressor 2 [Bos taurus].      509   e-144

>ref|NP_001069242.1| G protein pathway suppressor 2 [Bos taurus].
          Length = 327

 Score =  509 bits (1312), Expect = e-144
 Identities = 259/306 (84%), Positives = 259/306 (84%)
 Frame = +1

Query: 127  MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
            MPALLERPKLSNAMARALHRHIMM                                    
Sbjct: 1    MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60

Query: 307  XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
                   QILKLQEKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL
Sbjct: 61   SLEETKEQILKLQEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 120

Query: 487  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
            TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180

Query: 667  QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
            QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ
Sbjct: 181  QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 240

Query: 847  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
            TGFLQP GALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241  TGFLQPDGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300

Query: 1027 SGFATT 1044
            SGFATT
Sbjct: 301  SGFATT 306


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.316    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,445,913
Number of extensions: 1296731
Number of successful extensions: 8910
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8512
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003206
         (1044 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849607.1| PREDICTED: similar to G protein pathway suppres...   498   e-141

>ref|XP_849607.1| PREDICTED: similar to G protein pathway suppressor 2 [Canis
            familiaris].
          Length = 327

 Score =  498 bits (1283), Expect = e-141
 Identities = 253/306 (82%), Positives = 253/306 (82%)
 Frame = +1

Query: 127  MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
            MPALLERPKLSNAMARALHRHIMM                                    
Sbjct: 1    MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60

Query: 307  XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
                   QILKLQEKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61   SLEETKEQILKLQEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120

Query: 487  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
            TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAF GTPEHGQF
Sbjct: 121  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFPGTPEHGQF 180

Query: 667  QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
            QGSP  AYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPY VH HFQPTQ
Sbjct: 181  QGSPGSAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYTVHGHFQPTQ 240

Query: 847  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
            TGFLQPGGALSLQKQMEHANQQT FSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241  TGFLQPGGALSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300

Query: 1027 SGFATT 1044
            SGFA T
Sbjct: 301  SGFAAT 306


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.316    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,116,629
Number of extensions: 1333519
Number of successful extensions: 9607
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8827
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003206
         (1044 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004480.1| G protein pathway suppressor 2 [Homo sapiens].       505   e-143

>ref|NP_004480.1| G protein pathway suppressor 2 [Homo sapiens].
          Length = 327

 Score =  505 bits (1301), Expect = e-143
 Identities = 256/306 (83%), Positives = 257/306 (83%)
 Frame = +1

Query: 127  MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
            MPALLERPKLSNAMARALHRHIMM                                    
Sbjct: 1    MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60

Query: 307  XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
                   QILKL+EKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61   SLEETKEQILKLEEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120

Query: 487  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
            TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180

Query: 667  QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
            QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVH HFQPTQ
Sbjct: 181  QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQ 240

Query: 847  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
            TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300

Query: 1027 SGFATT 1044
            SGFA T
Sbjct: 301  SGFAAT 306


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.316    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,188,297
Number of extensions: 1299389
Number of successful extensions: 8672
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8382
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003206
         (1044 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062700.2| G protein pathway suppressor 2 [Mus musculus].       500   e-142

>ref|NP_062700.2| G protein pathway suppressor 2 [Mus musculus].
          Length = 327

 Score =  500 bits (1287), Expect = e-142
 Identities = 254/306 (83%), Positives = 255/306 (83%)
 Frame = +1

Query: 127  MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
            MPALLERPKLSNAMARALHRHIMM                                    
Sbjct: 1    MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60

Query: 307  XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
                   QILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61   SLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120

Query: 487  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
            TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180

Query: 667  QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
            QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVH HFQPTQ
Sbjct: 181  QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQ 240

Query: 847  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
            TGFLQPG  LSLQKQMEHANQQT FSDSSSLRPMHPQALHPAPGLLASPQLPVQ+Q AGK
Sbjct: 241  TGFLQPGSTLSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQIQAAGK 300

Query: 1027 SGFATT 1044
            SGFATT
Sbjct: 301  SGFATT 306


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.316    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,471,491
Number of extensions: 1069577
Number of successful extensions: 6827
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6567
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003206
         (1044 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003358288.1| PREDICTED: G protein pathway suppressor 2-li...   517   e-147
Alignment   gi|XP_003131982.1| PREDICTED: G protein pathway suppressor 2-li...   517   e-147

>ref|XP_003358288.1| PREDICTED: G protein pathway suppressor 2-like [Sus scrofa].
          Length = 327

 Score =  517 bits (1331), Expect = e-147
 Identities = 262/306 (85%), Positives = 262/306 (85%)
 Frame = +1

Query: 127  MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
            MPALLERPKLSNAMARALHRHIMM                                    
Sbjct: 1    MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60

Query: 307  XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
                   QILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL
Sbjct: 61   SLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 120

Query: 487  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
            TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF
Sbjct: 121  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 180

Query: 667  QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
            QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ
Sbjct: 181  QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 240

Query: 847  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
            TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300

Query: 1027 SGFATT 1044
            SGFATT
Sbjct: 301  SGFATT 306


>ref|XP_003131982.1| PREDICTED: G protein pathway suppressor 2-like [Sus scrofa].
          Length = 327

 Score =  517 bits (1331), Expect = e-147
 Identities = 262/306 (85%), Positives = 262/306 (85%)
 Frame = +1

Query: 127  MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
            MPALLERPKLSNAMARALHRHIMM                                    
Sbjct: 1    MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60

Query: 307  XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
                   QILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL
Sbjct: 61   SLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 120

Query: 487  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
            TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF
Sbjct: 121  TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 180

Query: 667  QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
            QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ
Sbjct: 181  QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 240

Query: 847  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
            TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241  TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300

Query: 1027 SGFATT 1044
            SGFATT
Sbjct: 301  SGFATT 306


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.316    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,814,628
Number of extensions: 839693
Number of successful extensions: 5483
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5376
Number of HSP's successfully gapped: 4
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003206
         (1044 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                         757   0.0  
Sscrofa_Chr06                                                          96   5e-17

>Sscrofa_Chr03 
||          Length = 144787322

 Score =  757 bits (382), Expect = 0.0
 Identities = 713/821 (86%), Gaps = 20/821 (2%)
 Strand = Plus / Minus

                                                                             
Query: 209       gcaagcggcaggaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagc 268
                 ||||| |||||||||| |||||||||||||||||||||| | | |||||||||||||  |
Sbjct: 115385701 gcaagtggcaggaggaggaagaggtggacaagatgatgggaaagaagatgaaggaagcac 115385642

                                                                             
Query: 269       aggagagaaggnnnnnnnn--ggaaatggaagagagaatgtcactagaggagaccaagga 326
                 |||||||||||          |||||| | ||||  ||||||||||||||||||||||||
Sbjct: 115385641 aggagagaagggggagaaaaaggaaatagcagagcaaatgtcactagaggagaccaagga 115385582

                                                                             
Query: 327       acaaatcctgaagttgcaggagaagctttcggccctccaggaagagaagcaccagctttt 386
                 ||||||||| |||||||||||| | |||||||||||  ||||||||||||| ||||||||
Sbjct: 115385581 acaaatccttaagttgcaggaggaactttcggccctataggaagagaagcagcagctttt 115385522

                                                                             
Query: 387       cctgcagctcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagagtga 446
                 ||||||||||||||||||||||||||||||||||| || ||| |  ||||||||| ||||
Sbjct: 115385521 cctgcagctcaagaaagttttacatgaggaagaaagacagagcc--aaggagcagggtga 115385464

                                                                             
Query: 447       cctgaccactctgacatcggcagcataccagcaaggcctgactgttcacacaggaactca 506
                 |||||||||| || |||| |  |||||||||||||||||||||||||||||||||| |||
Sbjct: 115385463 cctgaccactgtgccatcagaggcataccagcaaggcctgactgttcacacaggaagtca 115385404

                                                                             
Query: 507       cctcctcagcatgcaggggagccccggaggacacaatcggccaggcaccctcatggcagc 566
                 |||||||| |||||||||| |||| ||||||| ||| ||||||||||||| || ||||||
Sbjct: 115385403 cctcctcatcatgcaggggcgccctggaggacccaagcggccaggcaccc-cacggcagc 115385345

                                                                             
Query: 567       tgacagagccaaacagatgttcggcccccaagtgcttacaaaccgacactacgtgggctc 626
                  |||| ||||||| |||||||||| | |||||||||||| | | |  |||| ||||||||
Sbjct: 115385344 agacaaagccaaagagatgttcggactccaagtgcttacgagctggtactaggtgggctc 115385285

                                                                             
Query: 627       agcagctgctttcgcagggaccccggagcatgggcagttccaaggcagccccagcggcgc 686
                 ||||||||||||| | |||||||| ||||| ||||| |||| |||||||||  || ||||
Sbjct: 115385284 agcagctgctttcacggggacccctgagca-gggcaattccgaggcagcccaggcagcgc 115385226

                                                                             
Query: 687       ctatgggactgctcagcccccacctcactatggacccacccagcctgcctatagtcctag 746
                 |||| | |||||||||||| ||||||||||||||||||  |||||| |||||||||||  
Sbjct: 115385225 ctattgaactgctcagccctcacctcactatggaccca-gcagcctccctatagtcct-- 115385169

                                                                             
Query: 747       tcagcagctcagagcaccttcggcatttcctgcagtgcagtacctgtctcagccacagcc 806
                      ||||||||||  ||||||| ||||||||||| ||||||||||||      |||||
Sbjct: 115385168 -----agctcagagcgtcttcggcgtttcctgcagtacagtacctgtct------cagcc 115385120

                                                                             
Query: 807       acagccctatgctgtgcacagccactttcagcccacccagacaggcttcctccagcccgg 866
                 ||||| |||||||| |||||| || | |||||||||||||||||||||||||||||||||
Sbjct: 115385119 acagctctatgctgggcacaggcattctcagcccacccagacaggcttcctccagcccgg 115385060

                                                                             
Query: 867       tggcgccctgtccttacaaaagcagatggaacacgctaaccaacaaactggcttctctga 926
                 ||| |||||||||||||||||||||| |||||||| | |||| || ||| ||||||||||
Sbjct: 115385059 tggtgccctgtccttacaaaagcagagggaacacgttcaccagcagactagcttctctga 115385000

                                                                             
Query: 927       ctcatcctccctacgccccatgcatccccaagctctgcatccagcccctggactgcttgc 986
                 ||||||||| ||  | |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 115384999 ctcatcctcgctgagtcccatgcatccccaagctctgcatccagcccctgcactgcctgc 115384940

                                                          
Query: 987       ctcaccccagctccctgtgcagatgcaaccagcaggaaagt 1027
                 |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 115384939 ctcaccccagctccctgtacagatgcaaccagcaggaaagt 115384899



 Score =  325 bits (164), Expect = 3e-86
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                             
Query: 57        ggcccggtctgaggtctggcagccagtgacagagccgggcgtccacggcccgagcgcccc 116
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943136 ggcccggtctgaggtctggcagccagtgacagagccgggcgtccacggcccgagcgcccc 139943077

                                                                             
Query: 117       cagcagcaccatgcctgcgctcctggagcgccccaagctttccaacgccatggccagggc 176
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943076 cagcagcaccatgcctgcgctcctggagcgccccaagctttccaacgccatggccagggc 139943017

                                                             
Query: 177       gttgcaccggcacatcatgatggagcgggagcgcaagcggcagg 220
                 ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943016 gttgcaccggcacatcatgatggagcgggagcgcaagcggcagg 139942973



 Score =  297 bits (150), Expect = 6e-78
 Identities = 153/154 (99%)
 Strand = Plus / Minus

                                                                             
Query: 607       aaccgacactacgtgggctcagcagctgctttcgcagggaccccggagcatgggcagttc 666
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941739 aaccgacactacgtgggctcagcagctgctttcgcagggaccccggagcatgggcagttc 139941680

                                                                             
Query: 667       caaggcagccccagcggcgcctatgggactgctcagcccccacctcactatggacccacc 726
                 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941679 caaggcagccccggcggcgcctatgggactgctcagcccccacctcactatggacccacc 139941620

                                                   
Query: 727       cagcctgcctatagtcctagtcagcagctcagag 760
                 ||||||||||||||||||||||||||||||||||
Sbjct: 139941619 cagcctgcctatagtcctagtcagcagctcagag 139941586



 Score =  224 bits (113), Expect = 8e-56
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                             
Query: 331       atcctgaagttgcaggagaagctttcggccctccaggaagagaagcaccagcttttcctg 390
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942413 atcctgaagttgcaggagaagctttcggccctccaggaagagaagcaccagcttttcctg 139942354

                                                                      
Query: 391       cagctcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagag 443
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942353 cagctcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagag 139942301



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                             
Query: 931       tcctccctacgccccatgcatccccaagctctgcatccagcccctggactgcttgcctca 990
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941120 tcctccctacgccccatgcatccccaagctctgcatccagcccctggactgcttgcctca 139941061

                                                     
Query: 991       ccccagctccctgtgcagatgcaaccagcaggaaag 1026
                 ||||||||||||||||||||||||||||||||||||
Sbjct: 139941060 ccccagctccctgtgcagatgcaaccagcaggaaag 139941025



 Score =  184 bits (93), Expect = 6e-44
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                             
Query: 759       agcaccttcggcatttcctgcagtgcagtacctgtctcagccacagccacagccctatgc 818
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941480 agcaccttcggcatttcctgcagtgcagtacctgtctcagccacagccacagccctatgc 139941421

                                                  
Query: 819       tgtgcacagccactttcagcccacccagacagg 851
                 |||||||||||||||||||||||||||||||||
Sbjct: 139941420 tgtgcacagccactttcagcccacccagacagg 139941388



 Score =  172 bits (87), Expect = 2e-40
 Identities = 103/111 (92%)
 Strand = Plus / Minus

                                                                             
Query: 220       gaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagcaggagagaagg 279
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942601 gaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagcaggagagaagg 139942542

                                                                    
Query: 280       nnnnnnnnggaaatggaagagagaatgtcactagaggagaccaaggaacaa 330
                         |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942541 aaaaaaaaggaaatggaagagagaatgtcactagaggagaccaaggaacaa 139942491



 Score =  167 bits (84), Expect = 2e-38
 Identities = 84/84 (100%)
 Strand = Plus / Minus

                                                                             
Query: 523       gggagccccggaggacacaatcggccaggcaccctcatggcagctgacagagccaaacag 582
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941998 gggagccccggaggacacaatcggccaggcaccctcatggcagctgacagagccaaacag 139941939

                                         
Query: 583       atgttcggcccccaagtgcttaca 606
                 ||||||||||||||||||||||||
Sbjct: 139941938 atgttcggcccccaagtgcttaca 139941915



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                             
Query: 442       agtgacctgaccactctgacatcggcagcataccagcaaggcctgactgttcacacagga 501
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942166 agtgacctgaccactctgacatcggcagcataccagcaaggcctgactgttcacacagga 139942107

                                        
Query: 502       actcacctcctcagcatgcaggg 524
                 |||||||||||||||||||||||
Sbjct: 139942106 actcacctcctcagcatgcaggg 139942084



 Score =  163 bits (82), Expect = 2e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                             
Query: 849       aggcttcctccagcccggtggcgccctgtccttacaaaagcagatggaacacgctaacca 908
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941288 aggcttcctccagcccggtggcgccctgtccttacaaaagcagatggaacacgctaacca 139941229

                                       
Query: 909       acaaactggcttctctgactca 930
                 ||||||||||||||||||||||
Sbjct: 139941228 acaaactggcttctctgactca 139941207



 Score =  115 bits (58), Expect = 5e-23
 Identities = 58/58 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1         atgtgacgccacggcccaggcgctcgggaggccgcggagaaagcgacgagaagacggg 58
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943378 atgtgacgccacggcccaggcgctcgggaggccgcggagaaagcgacgagaagacggg 139943321


>Sscrofa_Chr06 
||          Length = 157765593

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 391/510 (76%), Gaps = 26/510 (5%)
 Strand = Plus / Plus

                                                                             
Query: 216       gcaggaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagcaggagag 275
                 |||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||   
Sbjct: 144957605 gcagaaggaagaagaggtggacaagacaatggaacagaagatgaaggaagagcaggaagt 144957664

                                                                             
Query: 276       aaggnnnnnnnnggaa-atggaagagagaatgtcactagaggagaccaaggaacaaatcc 334
                 ||||         ||| || | |||||| ||| |||| | |||||||| |||||||||  
Sbjct: 144957665 aaggaaaaaaagagaagattggagagagcatgccactgggggagaccagggaacaaatat 144957724

                                                                             
Query: 335       tgaagttgcaggagaagctttcggccctccaggaagagaagcaccagcttttcctgcagc 394
                 |||   |||||||||||||||  ||||  |||||||| |||||||   ||||||||||||
Sbjct: 144957725 tgacactgcaggagaagctttgagccccacaggaagaaaagcacccagttttcctgcagc 144957784

                                                                             
Query: 395       tcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagagtgacctgacca 454
                 |  |||||| | ||  |   |||||||| |  ||||  |||||||||| |||||||||||
Sbjct: 144957785 ttgagaaagctctatgt---gaagaaaatcaaaggcaaaaggagcagaatgacctgacca 144957841

                                                                             
Query: 455       ctctgacatcggcagcataccagcaaggcctgactgttcacacaggaactcacctcctca 514
                 |||||||||| |                     |||| ||| ||||| ||||||||||| 
Sbjct: 144957842 ctctgacatcag---------------------ctgtgcacccaggagctcacctcctcc 144957880

                                                                             
Query: 515       gcatgcaggggagccccggaggacacaatcggccaggcaccctcatggcagctgacagag 574
                 |||| | ||||| | | |||||||||||||  ||||||| ||||||| | ||||||||||
Sbjct: 144957881 gcatcctggggaccactggaggacacaatcacccaggcatcctcatgcccgctgacagag 144957940

                                                                             
Query: 575       ccaaacagatgttcggcccccaagtgcttacaaaccgacactacgtgggctcagcagctg 634
                 |||| ||||| || || |||||  ||| ||  |   | |||||||||||| |||| | ||
Sbjct: 144957941 ccaagcagatatttggaccccagatgcatatgacttgccactacgtgggcccagctgttg 144958000

                                                                             
Query: 635       ctttcgcagggaccccggagcatgggcagttccaaggcagccccagcggcgcctatggga 694
                 ||| | |||| ||||| || ||||| || |||||| |||||||  || || ||||||| |
Sbjct: 144958001 cttccacaggaaccccagaacatggacaattccaa-gcagcccaggcagcacctatggaa 144958059

                                               
Query: 695       ctgctcagcccccacctcactatggaccca 724
                 ||| ||||| ||||||||||||||||||||
Sbjct: 144958060 ctgttcagctcccacctcactatggaccca 144958089



 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                 
Query: 917       gcttctctgactcatcctccctacgccccatgcatccccaagctctgc 964
                 ||||||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct: 144958276 gcttctctgactcatcctccccatgccccattcatccccaagctctgc 144958323


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,977,186
Number of extensions: 669
Number of successful extensions: 669
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 19
Length of query: 1044
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1023
Effective length of database: 2,808,413,156
Effective search space: 2873006658588
Effective search space used: 2873006658588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)