Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003206
(1044 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069242.1| G protein pathway suppressor 2 [Bos taurus]. 509 e-144
>ref|NP_001069242.1| G protein pathway suppressor 2 [Bos taurus].
Length = 327
Score = 509 bits (1312), Expect = e-144
Identities = 259/306 (84%), Positives = 259/306 (84%)
Frame = +1
Query: 127 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 307 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
QILKLQEKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL
Sbjct: 61 SLEETKEQILKLQEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 120
Query: 487 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180
Query: 667 QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ
Sbjct: 181 QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 240
Query: 847 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
TGFLQP GALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241 TGFLQPDGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300
Query: 1027 SGFATT 1044
SGFATT
Sbjct: 301 SGFATT 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,445,913
Number of extensions: 1296731
Number of successful extensions: 8910
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8512
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003206
(1044 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849607.1| PREDICTED: similar to G protein pathway suppres... 498 e-141
>ref|XP_849607.1| PREDICTED: similar to G protein pathway suppressor 2 [Canis
familiaris].
Length = 327
Score = 498 bits (1283), Expect = e-141
Identities = 253/306 (82%), Positives = 253/306 (82%)
Frame = +1
Query: 127 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 307 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
QILKLQEKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61 SLEETKEQILKLQEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120
Query: 487 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAF GTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFPGTPEHGQF 180
Query: 667 QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
QGSP AYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPY VH HFQPTQ
Sbjct: 181 QGSPGSAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYTVHGHFQPTQ 240
Query: 847 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
TGFLQPGGALSLQKQMEHANQQT FSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241 TGFLQPGGALSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300
Query: 1027 SGFATT 1044
SGFA T
Sbjct: 301 SGFAAT 306
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,116,629
Number of extensions: 1333519
Number of successful extensions: 9607
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8827
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003206
(1044 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004480.1| G protein pathway suppressor 2 [Homo sapiens]. 505 e-143
>ref|NP_004480.1| G protein pathway suppressor 2 [Homo sapiens].
Length = 327
Score = 505 bits (1301), Expect = e-143
Identities = 256/306 (83%), Positives = 257/306 (83%)
Frame = +1
Query: 127 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 307 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
QILKL+EKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61 SLEETKEQILKLEEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120
Query: 487 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180
Query: 667 QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVH HFQPTQ
Sbjct: 181 QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQ 240
Query: 847 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300
Query: 1027 SGFATT 1044
SGFA T
Sbjct: 301 SGFAAT 306
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,188,297
Number of extensions: 1299389
Number of successful extensions: 8672
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8382
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003206
(1044 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062700.2| G protein pathway suppressor 2 [Mus musculus]. 500 e-142
>ref|NP_062700.2| G protein pathway suppressor 2 [Mus musculus].
Length = 327
Score = 500 bits (1287), Expect = e-142
Identities = 254/306 (83%), Positives = 255/306 (83%)
Frame = +1
Query: 127 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 307 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
QILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61 SLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120
Query: 487 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180
Query: 667 QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVH HFQPTQ
Sbjct: 181 QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHGHFQPTQ 240
Query: 847 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
TGFLQPG LSLQKQMEHANQQT FSDSSSLRPMHPQALHPAPGLLASPQLPVQ+Q AGK
Sbjct: 241 TGFLQPGSTLSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQLPVQIQAAGK 300
Query: 1027 SGFATT 1044
SGFATT
Sbjct: 301 SGFATT 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,471,491
Number of extensions: 1069577
Number of successful extensions: 6827
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6567
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003206
(1044 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358288.1| PREDICTED: G protein pathway suppressor 2-li... 517 e-147
Alignment gi|XP_003131982.1| PREDICTED: G protein pathway suppressor 2-li... 517 e-147
>ref|XP_003358288.1| PREDICTED: G protein pathway suppressor 2-like [Sus scrofa].
Length = 327
Score = 517 bits (1331), Expect = e-147
Identities = 262/306 (85%), Positives = 262/306 (85%)
Frame = +1
Query: 127 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 307 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
QILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL
Sbjct: 61 SLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 120
Query: 487 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 180
Query: 667 QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ
Sbjct: 181 QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 240
Query: 847 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300
Query: 1027 SGFATT 1044
SGFATT
Sbjct: 301 SGFATT 306
>ref|XP_003131982.1| PREDICTED: G protein pathway suppressor 2-like [Sus scrofa].
Length = 327
Score = 517 bits (1331), Expect = e-147
Identities = 262/306 (85%), Positives = 262/306 (85%)
Frame = +1
Query: 127 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 307 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 486
QILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL
Sbjct: 61 SLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 120
Query: 487 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 666
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 180
Query: 667 QGSPSGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 846
QGSP GAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ
Sbjct: 181 QGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPYAVHSHFQPTQ 240
Query: 847 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 1026
TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK
Sbjct: 241 TGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGK 300
Query: 1027 SGFATT 1044
SGFATT
Sbjct: 301 SGFATT 306
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,814,628
Number of extensions: 839693
Number of successful extensions: 5483
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5376
Number of HSP's successfully gapped: 4
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003206
(1044 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 757 0.0
Sscrofa_Chr06 96 5e-17
>Sscrofa_Chr03
|| Length = 144787322
Score = 757 bits (382), Expect = 0.0
Identities = 713/821 (86%), Gaps = 20/821 (2%)
Strand = Plus / Minus
Query: 209 gcaagcggcaggaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagc 268
||||| |||||||||| |||||||||||||||||||||| | | ||||||||||||| |
Sbjct: 115385701 gcaagtggcaggaggaggaagaggtggacaagatgatgggaaagaagatgaaggaagcac 115385642
Query: 269 aggagagaaggnnnnnnnn--ggaaatggaagagagaatgtcactagaggagaccaagga 326
||||||||||| |||||| | |||| ||||||||||||||||||||||||
Sbjct: 115385641 aggagagaagggggagaaaaaggaaatagcagagcaaatgtcactagaggagaccaagga 115385582
Query: 327 acaaatcctgaagttgcaggagaagctttcggccctccaggaagagaagcaccagctttt 386
||||||||| |||||||||||| | ||||||||||| ||||||||||||| ||||||||
Sbjct: 115385581 acaaatccttaagttgcaggaggaactttcggccctataggaagagaagcagcagctttt 115385522
Query: 387 cctgcagctcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagagtga 446
||||||||||||||||||||||||||||||||||| || ||| | ||||||||| ||||
Sbjct: 115385521 cctgcagctcaagaaagttttacatgaggaagaaagacagagcc--aaggagcagggtga 115385464
Query: 447 cctgaccactctgacatcggcagcataccagcaaggcctgactgttcacacaggaactca 506
|||||||||| || |||| | |||||||||||||||||||||||||||||||||| |||
Sbjct: 115385463 cctgaccactgtgccatcagaggcataccagcaaggcctgactgttcacacaggaagtca 115385404
Query: 507 cctcctcagcatgcaggggagccccggaggacacaatcggccaggcaccctcatggcagc 566
|||||||| |||||||||| |||| ||||||| ||| ||||||||||||| || ||||||
Sbjct: 115385403 cctcctcatcatgcaggggcgccctggaggacccaagcggccaggcaccc-cacggcagc 115385345
Query: 567 tgacagagccaaacagatgttcggcccccaagtgcttacaaaccgacactacgtgggctc 626
|||| ||||||| |||||||||| | |||||||||||| | | | |||| ||||||||
Sbjct: 115385344 agacaaagccaaagagatgttcggactccaagtgcttacgagctggtactaggtgggctc 115385285
Query: 627 agcagctgctttcgcagggaccccggagcatgggcagttccaaggcagccccagcggcgc 686
||||||||||||| | |||||||| ||||| ||||| |||| ||||||||| || ||||
Sbjct: 115385284 agcagctgctttcacggggacccctgagca-gggcaattccgaggcagcccaggcagcgc 115385226
Query: 687 ctatgggactgctcagcccccacctcactatggacccacccagcctgcctatagtcctag 746
|||| | |||||||||||| |||||||||||||||||| |||||| |||||||||||
Sbjct: 115385225 ctattgaactgctcagccctcacctcactatggaccca-gcagcctccctatagtcct-- 115385169
Query: 747 tcagcagctcagagcaccttcggcatttcctgcagtgcagtacctgtctcagccacagcc 806
|||||||||| ||||||| ||||||||||| |||||||||||| |||||
Sbjct: 115385168 -----agctcagagcgtcttcggcgtttcctgcagtacagtacctgtct------cagcc 115385120
Query: 807 acagccctatgctgtgcacagccactttcagcccacccagacaggcttcctccagcccgg 866
||||| |||||||| |||||| || | |||||||||||||||||||||||||||||||||
Sbjct: 115385119 acagctctatgctgggcacaggcattctcagcccacccagacaggcttcctccagcccgg 115385060
Query: 867 tggcgccctgtccttacaaaagcagatggaacacgctaaccaacaaactggcttctctga 926
||| |||||||||||||||||||||| |||||||| | |||| || ||| ||||||||||
Sbjct: 115385059 tggtgccctgtccttacaaaagcagagggaacacgttcaccagcagactagcttctctga 115385000
Query: 927 ctcatcctccctacgccccatgcatccccaagctctgcatccagcccctggactgcttgc 986
||||||||| || | |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 115384999 ctcatcctcgctgagtcccatgcatccccaagctctgcatccagcccctgcactgcctgc 115384940
Query: 987 ctcaccccagctccctgtgcagatgcaaccagcaggaaagt 1027
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 115384939 ctcaccccagctccctgtacagatgcaaccagcaggaaagt 115384899
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 57 ggcccggtctgaggtctggcagccagtgacagagccgggcgtccacggcccgagcgcccc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943136 ggcccggtctgaggtctggcagccagtgacagagccgggcgtccacggcccgagcgcccc 139943077
Query: 117 cagcagcaccatgcctgcgctcctggagcgccccaagctttccaacgccatggccagggc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943076 cagcagcaccatgcctgcgctcctggagcgccccaagctttccaacgccatggccagggc 139943017
Query: 177 gttgcaccggcacatcatgatggagcgggagcgcaagcggcagg 220
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943016 gttgcaccggcacatcatgatggagcgggagcgcaagcggcagg 139942973
Score = 297 bits (150), Expect = 6e-78
Identities = 153/154 (99%)
Strand = Plus / Minus
Query: 607 aaccgacactacgtgggctcagcagctgctttcgcagggaccccggagcatgggcagttc 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941739 aaccgacactacgtgggctcagcagctgctttcgcagggaccccggagcatgggcagttc 139941680
Query: 667 caaggcagccccagcggcgcctatgggactgctcagcccccacctcactatggacccacc 726
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941679 caaggcagccccggcggcgcctatgggactgctcagcccccacctcactatggacccacc 139941620
Query: 727 cagcctgcctatagtcctagtcagcagctcagag 760
||||||||||||||||||||||||||||||||||
Sbjct: 139941619 cagcctgcctatagtcctagtcagcagctcagag 139941586
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 331 atcctgaagttgcaggagaagctttcggccctccaggaagagaagcaccagcttttcctg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942413 atcctgaagttgcaggagaagctttcggccctccaggaagagaagcaccagcttttcctg 139942354
Query: 391 cagctcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagag 443
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942353 cagctcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagag 139942301
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 931 tcctccctacgccccatgcatccccaagctctgcatccagcccctggactgcttgcctca 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941120 tcctccctacgccccatgcatccccaagctctgcatccagcccctggactgcttgcctca 139941061
Query: 991 ccccagctccctgtgcagatgcaaccagcaggaaag 1026
||||||||||||||||||||||||||||||||||||
Sbjct: 139941060 ccccagctccctgtgcagatgcaaccagcaggaaag 139941025
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 759 agcaccttcggcatttcctgcagtgcagtacctgtctcagccacagccacagccctatgc 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941480 agcaccttcggcatttcctgcagtgcagtacctgtctcagccacagccacagccctatgc 139941421
Query: 819 tgtgcacagccactttcagcccacccagacagg 851
|||||||||||||||||||||||||||||||||
Sbjct: 139941420 tgtgcacagccactttcagcccacccagacagg 139941388
Score = 172 bits (87), Expect = 2e-40
Identities = 103/111 (92%)
Strand = Plus / Minus
Query: 220 gaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagcaggagagaagg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942601 gaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagcaggagagaagg 139942542
Query: 280 nnnnnnnnggaaatggaagagagaatgtcactagaggagaccaaggaacaa 330
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942541 aaaaaaaaggaaatggaagagagaatgtcactagaggagaccaaggaacaa 139942491
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 523 gggagccccggaggacacaatcggccaggcaccctcatggcagctgacagagccaaacag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941998 gggagccccggaggacacaatcggccaggcaccctcatggcagctgacagagccaaacag 139941939
Query: 583 atgttcggcccccaagtgcttaca 606
||||||||||||||||||||||||
Sbjct: 139941938 atgttcggcccccaagtgcttaca 139941915
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 442 agtgacctgaccactctgacatcggcagcataccagcaaggcctgactgttcacacagga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139942166 agtgacctgaccactctgacatcggcagcataccagcaaggcctgactgttcacacagga 139942107
Query: 502 actcacctcctcagcatgcaggg 524
|||||||||||||||||||||||
Sbjct: 139942106 actcacctcctcagcatgcaggg 139942084
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 849 aggcttcctccagcccggtggcgccctgtccttacaaaagcagatggaacacgctaacca 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139941288 aggcttcctccagcccggtggcgccctgtccttacaaaagcagatggaacacgctaacca 139941229
Query: 909 acaaactggcttctctgactca 930
||||||||||||||||||||||
Sbjct: 139941228 acaaactggcttctctgactca 139941207
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1 atgtgacgccacggcccaggcgctcgggaggccgcggagaaagcgacgagaagacggg 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139943378 atgtgacgccacggcccaggcgctcgggaggccgcggagaaagcgacgagaagacggg 139943321
>Sscrofa_Chr06
|| Length = 157765593
Score = 95.6 bits (48), Expect = 5e-17
Identities = 391/510 (76%), Gaps = 26/510 (5%)
Strand = Plus / Plus
Query: 216 gcaggaggaagaagaggtggacaagatgatggaacaaaagatgaaggaagagcaggagag 275
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 144957605 gcagaaggaagaagaggtggacaagacaatggaacagaagatgaaggaagagcaggaagt 144957664
Query: 276 aaggnnnnnnnnggaa-atggaagagagaatgtcactagaggagaccaaggaacaaatcc 334
|||| ||| || | |||||| ||| |||| | |||||||| |||||||||
Sbjct: 144957665 aaggaaaaaaagagaagattggagagagcatgccactgggggagaccagggaacaaatat 144957724
Query: 335 tgaagttgcaggagaagctttcggccctccaggaagagaagcaccagcttttcctgcagc 394
||| ||||||||||||||| |||| |||||||| ||||||| ||||||||||||
Sbjct: 144957725 tgacactgcaggagaagctttgagccccacaggaagaaaagcacccagttttcctgcagc 144957784
Query: 395 tcaagaaagttttacatgaggaagaaaaacggaggcggaaggagcagagtgacctgacca 454
| |||||| | || | |||||||| | |||| |||||||||| |||||||||||
Sbjct: 144957785 ttgagaaagctctatgt---gaagaaaatcaaaggcaaaaggagcagaatgacctgacca 144957841
Query: 455 ctctgacatcggcagcataccagcaaggcctgactgttcacacaggaactcacctcctca 514
|||||||||| | |||| ||| ||||| |||||||||||
Sbjct: 144957842 ctctgacatcag---------------------ctgtgcacccaggagctcacctcctcc 144957880
Query: 515 gcatgcaggggagccccggaggacacaatcggccaggcaccctcatggcagctgacagag 574
|||| | ||||| | | ||||||||||||| ||||||| ||||||| | ||||||||||
Sbjct: 144957881 gcatcctggggaccactggaggacacaatcacccaggcatcctcatgcccgctgacagag 144957940
Query: 575 ccaaacagatgttcggcccccaagtgcttacaaaccgacactacgtgggctcagcagctg 634
|||| ||||| || || ||||| ||| || | | |||||||||||| |||| | ||
Sbjct: 144957941 ccaagcagatatttggaccccagatgcatatgacttgccactacgtgggcccagctgttg 144958000
Query: 635 ctttcgcagggaccccggagcatgggcagttccaaggcagccccagcggcgcctatggga 694
||| | |||| ||||| || ||||| || |||||| ||||||| || || ||||||| |
Sbjct: 144958001 cttccacaggaaccccagaacatggacaattccaa-gcagcccaggcagcacctatggaa 144958059
Query: 695 ctgctcagcccccacctcactatggaccca 724
||| ||||| ||||||||||||||||||||
Sbjct: 144958060 ctgttcagctcccacctcactatggaccca 144958089
Score = 71.9 bits (36), Expect = 7e-10
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 917 gcttctctgactcatcctccctacgccccatgcatccccaagctctgc 964
||||||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct: 144958276 gcttctctgactcatcctccccatgccccattcatccccaagctctgc 144958323
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,977,186
Number of extensions: 669
Number of successful extensions: 669
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 19
Length of query: 1044
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1023
Effective length of database: 2,808,413,156
Effective search space: 2873006658588
Effective search space used: 2873006658588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)