Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003211
(1560 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192978.1| cytochrome b reductase 1 [Bos taurus]. 482 e-136
Alignment gi|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bo... 482 e-136
Alignment gi|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [... 191 2e-48
Alignment gi|NP_777262.1| cytochrome b561 [Bos taurus]. 134 2e-31
Alignment gi|XP_002685344.1| PREDICTED: hypothetical protein [Bos taurus]. 108 2e-23
Alignment gi|XP_002703649.1| PREDICTED: hypothetical protein [Bos taurus]. 108 2e-23
>ref|NP_001192978.1| cytochrome b reductase 1 [Bos taurus].
Length = 285
Score = 482 bits (1240), Expect = e-136
Identities = 236/285 (82%), Positives = 250/285 (87%)
Frame = +2
Query: 272 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF 451
MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLH+REGLGWDGTALEFNWHPVL+VTGFVF
Sbjct: 1 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVF 60
Query: 452 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLH 631
I GIAIIVYRLPWTWKCSKLLMKSIHAGLNT FDFHNA+KIPNMYSLH
Sbjct: 61 ILGIAIIVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLH 120
Query: 632 SWVGLAAVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTE 811
SWVGL AVILY+ PWAPLSLRALLMPIHVYSGL IFGTVIATVLMG+TE
Sbjct: 121 SWVGLTAVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTE 180
Query: 812 KLIFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNRG 991
KLIFAL++P+YS+LPPEG+FTNT GLL+LVFGALIFWIVTRPQWKRPKEPNSVLL PN G
Sbjct: 181 KLIFALKNPSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPKEPNSVLLQPNGG 240
Query: 992 APEGAEGTMAVNFGNMDKSDSELNSEAAARKRNFALDEAGQRSTM 1126
APEG E +MA+NFGN+DKSDSELNSEAAARKRN LDEAGQRSTM
Sbjct: 241 APEGVESSMAMNFGNVDKSDSELNSEAAARKRNITLDEAGQRSTM 285
>ref|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bos taurus].
Length = 285
Score = 482 bits (1240), Expect = e-136
Identities = 236/285 (82%), Positives = 250/285 (87%)
Frame = +2
Query: 272 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF 451
MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLH+REGLGWDGTALEFNWHPVL+VTGFVF
Sbjct: 1 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVF 60
Query: 452 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLH 631
I GIAIIVYRLPWTWKCSKLLMKSIHAGLNT FDFHNA+KIPNMYSLH
Sbjct: 61 ILGIAIIVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLH 120
Query: 632 SWVGLAAVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTE 811
SWVGL AVILY+ PWAPLSLRALLMPIHVYSGL IFGTVIATVLMG+TE
Sbjct: 121 SWVGLTAVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTE 180
Query: 812 KLIFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNRG 991
KLIFAL++P+YS+LPPEG+FTNT GLL+LVFGALIFWIVTRPQWKRPKEPNSVLL PN G
Sbjct: 181 KLIFALKNPSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPKEPNSVLLQPNGG 240
Query: 992 APEGAEGTMAVNFGNMDKSDSELNSEAAARKRNFALDEAGQRSTM 1126
APEG E +MA+NFGN+DKSDSELNSEAAARKRN LDEAGQRSTM
Sbjct: 241 APEGVESSMAMNFGNVDKSDSELNSEAAARKRNITLDEAGQRSTM 285
>ref|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [Bos taurus].
Length = 265
Score = 191 bits (484), Expect = 2e-48
Identities = 100/244 (40%), Positives = 138/244 (56%), Gaps = 8/244 (3%)
Frame = +2
Query: 293 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 469
G+ L V AL +G + ++FT+ W+ ++ G WDG+ L FNWHPVL+VTG V + A
Sbjct: 4 GWFYLSVLALCSLGSMCILFTIYWMRYWHGGFAWDGSMLMFNWHPVLMVTGMVVLYSAAS 63
Query: 470 IVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLA 649
+VYRLP +W +L KS HA ++ F+FHN KIP++YSLHSW+G+
Sbjct: 64 LVYRLPQSWVGPRLPWKSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWLGIT 123
Query: 650 AVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFAL 829
V L+ PWA + LR+LL PIHV+ G I IA+V+ G+ EKL F+L
Sbjct: 124 TVFLFACQWFLGFSVFLLPWASMWLRSLLKPIHVFFGASILSLAIASVVSGINEKLFFSL 183
Query: 830 Q--SPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNR----- 988
+ + YS LP E VF N G+LV+VFG L+ +I+ WKRP+ P R
Sbjct: 184 KNGTKTYSNLPSEAVFANCAGMLVVVFGLLVLYILLASSWKRPEPGMQAEREPTRTRGRA 243
Query: 989 GAPE 1000
G PE
Sbjct: 244 GTPE 247
>ref|NP_777262.1| cytochrome b561 [Bos taurus].
Length = 273
Score = 134 bits (338), Expect = 2e-31
Identities = 76/210 (36%), Positives = 109/210 (51%)
Frame = +2
Query: 323 LVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKC 502
L+G + V T W+ YR G+ W+ +AL+FN HP+ ++ G VF+QG A++VYR+
Sbjct: 44 LLGLIVVAMTGAWLGMYRGGIAWE-SALQFNVHPLCMIIGLVFLQGDALLVYRV--FRNE 100
Query: 503 SKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXX 682
+K K +H L+ F+ H + ++YSLHSW G+ L+
Sbjct: 101 AKRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLV 160
Query: 683 XXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPAYSTLPPE 862
P A SLR+ P HV+ G IF +AT L+G+ E L+F L YS PE
Sbjct: 161 GFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFEL-GTKYSMFEPE 219
Query: 863 GVFTNTFGLLVLVFGALIFWIVTRPQWKRP 952
GV N GLL+ F +I +I+TR WKRP
Sbjct: 220 GVLANVLGLLLATFATVILYILTRADWKRP 249
>ref|XP_002685344.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 337
Score = 108 bits (269), Expect = 2e-23
Identities = 51/63 (80%), Positives = 54/63 (85%)
Frame = -3
Query: 430 EHWVPVKLQRSPVPAEPLSVVEDPNEGEDHGQEADEQSRHQQRQETPVTFHGHQCPILRT 251
EH VPVKL+R PVPAEPLSVVEDP+EGEDH QEAD+Q RHQQRQE PV HGHQ PILR
Sbjct: 254 EHRVPVKLERGPVPAEPLSVVEDPDEGEDHRQEADQQRRHQQRQEAPVALHGHQRPILRA 313
Query: 250 VAA 242
VAA
Sbjct: 314 VAA 316
>ref|XP_002703649.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 337
Score = 108 bits (269), Expect = 2e-23
Identities = 51/63 (80%), Positives = 54/63 (85%)
Frame = -3
Query: 430 EHWVPVKLQRSPVPAEPLSVVEDPNEGEDHGQEADEQSRHQQRQETPVTFHGHQCPILRT 251
EH VPVKL+R PVPAEPLSVVEDP+EGEDH QEAD+Q RHQQRQE PV HGHQ PILR
Sbjct: 254 EHRVPVKLERGPVPAEPLSVVEDPDEGEDHRQEADQQRRHQQRQEAPVALHGHQRPILRA 313
Query: 250 VAA 242
VAA
Sbjct: 314 VAA 316
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,785,606
Number of extensions: 1583534
Number of successful extensions: 8942
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8854
Number of HSP's successfully gapped: 6
Length of query: 520
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,140,958
Effective search space: 5840215654
Effective search space used: 5840215654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003211
(1560 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 ... 428 e-120
Alignment gi|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate d... 170 4e-42
Alignment gi|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochro... 142 1e-33
>ref|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris].
Length = 280
Score = 428 bits (1101), Expect = e-120
Identities = 209/283 (73%), Positives = 235/283 (83%)
Frame = +2
Query: 278 MEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQ 457
M+GYRGFL LLVSALLVGFL+V+F+L+WVLHYREGLGWDGTALEFNWHPV +VTGFVFIQ
Sbjct: 1 MDGYRGFLGLLVSALLVGFLAVVFSLVWVLHYREGLGWDGTALEFNWHPVFMVTGFVFIQ 60
Query: 458 GIAIIVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSW 637
GIAIIVYRLPWTWKCSKLLMKSIHAGL+T FD+HNA IPNMYSLHSW
Sbjct: 61 GIAIIVYRLPWTWKCSKLLMKSIHAGLHTVAAILVIISLVSVFDYHNAGNIPNMYSLHSW 120
Query: 638 VGLAAVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKL 817
VGL VILY+ PWAPLSLRAL+MP+HVYSGLLIFGTVIATVLMGVTEKL
Sbjct: 121 VGLTVVILYILQLLLGVLVFLLPWAPLSLRALVMPMHVYSGLLIFGTVIATVLMGVTEKL 180
Query: 818 IFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNRGAP 997
IF + YS+ PPEGVF NT GLL +VFGALIFWIVTRPQW+RPKEPN +L PN GA
Sbjct: 181 IFGVS--GYSSFPPEGVFANTLGLLNVVFGALIFWIVTRPQWQRPKEPNPILFQPNGGAR 238
Query: 998 EGAEGTMAVNFGNMDKSDSELNSEAAARKRNFALDEAGQRSTM 1126
EGAEG+ A+NF ++D+SDS+LN+E AA+KRNF++DEAGQRSTM
Sbjct: 239 EGAEGS-AINFSHVDQSDSKLNNEVAAKKRNFSVDEAGQRSTM 280
>ref|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein
[Canis familiaris].
Length = 242
Score = 170 bits (430), Expect = 4e-42
Identities = 86/222 (38%), Positives = 121/222 (54%), Gaps = 2/222 (0%)
Frame = +2
Query: 296 FLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIV 475
F S +G + +I T+ WV + G WDGT L FN+HPV +V G V + A ++
Sbjct: 6 FYLSFYSLWFLGLMCIILTIYWVQLWHGGFAWDGTLLMFNYHPVFMVVGSVVLYSAASLL 65
Query: 476 YRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAV 655
YRLP +W KL K HA L+ F H +I N+YSLHSW+G+ V
Sbjct: 66 YRLPQSWVGPKLPWKIGHAMLHLLAFILTVLGLVAVFQLHRRSRITNLYSLHSWLGIVTV 125
Query: 656 ILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQS 835
L+ PW + LR+LL PIHV+ G++I IA+V+ G+ EKL F+L +
Sbjct: 126 FLFACQWFLGFVVFLLPWMSVWLRSLLKPIHVFFGVVILSLSIASVISGINEKLFFSLNN 185
Query: 836 PA--YSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 955
YS LP E +F N+ G+LV+VFG L+ +I+ WKRP+
Sbjct: 186 ATQPYSNLPSEAIFANSLGMLVVVFGLLVLYILLVSSWKRPE 227
>ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis
familiaris].
Length = 252
Score = 142 bits (357), Expect = 1e-33
Identities = 83/244 (34%), Positives = 121/244 (49%)
Frame = +2
Query: 323 LVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKC 502
L+G V T W+ YR G+ W+G AL+FN HP+ +V G +F+QG A++VYR+
Sbjct: 23 LLGLTVVAMTGAWLGLYRGGIAWEG-ALQFNVHPLCMVIGLIFLQGDALLVYRV--FRNE 79
Query: 503 SKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXX 682
+K K +H L+ FD+H + ++YSLHSW G+ +LY
Sbjct: 80 AKRTTKVLHGLLHVLALIIALVGLVAVFDYHRQKGYADLYSLHSWCGILVFVLYFMQWLV 139
Query: 683 XXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPAYSTLPPE 862
P A SLR+ P HV+ G IF + T L+G+ E L+F L YST E
Sbjct: 140 GFSFFLFPGASFSLRSRYRPQHVFFGATIFVLSLGTALLGLKEALLFKL-GAKYSTFEAE 198
Query: 863 GVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNRGAPEGAEGTMAVNFGNMD 1042
GV N GLL+ FG + +I+TR WKRP P+ E ++++F +
Sbjct: 199 GVLANVLGLLLASFGVTVLYILTRADWKRP--------------PQAEEQALSMDFKTLT 244
Query: 1043 KSDS 1054
+ DS
Sbjct: 245 EGDS 248
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,370,063
Number of extensions: 1636285
Number of successful extensions: 9782
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9675
Number of HSP's successfully gapped: 3
Length of query: 520
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 413
Effective length of database: 15,307,552
Effective search space: 6322018976
Effective search space used: 6322018976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003211
(1560 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapien... 437 e-122
Alignment gi|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 i... 179 8e-45
Alignment gi|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isof... 179 8e-45
Alignment gi|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 i... 179 8e-45
Alignment gi|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sap... 150 4e-36
Alignment gi|NP_001017916.1| cytochrome b561 [Homo sapiens]. 135 8e-32
Alignment gi|NP_001017917.1| cytochrome b561 [Homo sapiens]. 135 8e-32
Alignment gi|NP_001906.3| cytochrome b561 [Homo sapiens]. 135 8e-32
>ref|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapiens].
Length = 286
Score = 437 bits (1123), Expect = e-122
Identities = 217/286 (75%), Positives = 232/286 (81%), Gaps = 1/286 (0%)
Frame = +2
Query: 272 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF 451
MAMEGY FLALL SALLVGFLSVIF L+WVLHYREGLGWDG+ALEFNWHPVL+VTGFVF
Sbjct: 1 MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF 60
Query: 452 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLH 631
IQGIAIIVYRLPWTWKCSKLLMKSIHAGLN F+ HN I NMYSLH
Sbjct: 61 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLH 120
Query: 632 SWVGLAAVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTE 811
SWVGL AVI Y+ PWAPLSLRA LMPIHVYSG++IFGTVIAT LMG+TE
Sbjct: 121 SWVGLIAVICYLLQLLSGFSVFLLPWAPLSLRAFLMPIHVYSGIVIFGTVIATALMGLTE 180
Query: 812 KLIFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNRG 991
KLIF+L+ PAYST PPEGVF NT GLL+LVFGALIFWIVTRPQWKRPKEPNS +LHPN G
Sbjct: 181 KLIFSLRDPAYSTFPPEGVFVNTLGLLILVFGALIFWIVTRPQWKRPKEPNSTILHPNGG 240
Query: 992 APEGAEGTM-AVNFGNMDKSDSELNSEAAARKRNFALDEAGQRSTM 1126
+GA G+M A + NMDKSDSELNSE AARKRN ALDEAGQRSTM
Sbjct: 241 TEQGARGSMPAYSGNNMDKSDSELNSEVAARKRNLALDEAGQRSTM 286
>ref|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo
sapiens].
Length = 242
Score = 179 bits (453), Expect = 8e-45
Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 5/220 (2%)
Frame = +2
Query: 311 VSALLVGFLS---VIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYR 481
+S LL+G L ++FT+ W+ ++R G W+G+ FNWHPVL+V G V G A +VYR
Sbjct: 8 LSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYR 67
Query: 482 LPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVIL 661
LP +W KL K +HA L+ F FHN + N+YSLHSW+G+ V L
Sbjct: 68 LPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFL 127
Query: 662 YMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPA 841
+ PWA + LR+LL PIHV+ G I IA+V+ G+ EKL F+L++
Sbjct: 128 FACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTT 187
Query: 842 --YSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 955
Y +LP E VF N+ G+LV+ FG L+ +I+ WKRP+
Sbjct: 188 RPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPE 227
>ref|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo
sapiens].
Length = 242
Score = 179 bits (453), Expect = 8e-45
Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 5/220 (2%)
Frame = +2
Query: 311 VSALLVGFLS---VIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYR 481
+S LL+G L ++FT+ W+ ++R G W+G+ FNWHPVL+V G V G A +VYR
Sbjct: 8 LSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYR 67
Query: 482 LPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVIL 661
LP +W KL K +HA L+ F FHN + N+YSLHSW+G+ V L
Sbjct: 68 LPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFL 127
Query: 662 YMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPA 841
+ PWA + LR+LL PIHV+ G I IA+V+ G+ EKL F+L++
Sbjct: 128 FACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTT 187
Query: 842 --YSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 955
Y +LP E VF N+ G+LV+ FG L+ +I+ WKRP+
Sbjct: 188 RPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPE 227
>ref|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo
sapiens].
Length = 259
Score = 179 bits (453), Expect = 8e-45
Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 5/220 (2%)
Frame = +2
Query: 311 VSALLVGFLS---VIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYR 481
+S LL+G L ++FT+ W+ ++R G W+G+ FNWHPVL+V G V G A +VYR
Sbjct: 25 LSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYR 84
Query: 482 LPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVIL 661
LP +W KL K +HA L+ F FHN + N+YSLHSW+G+ V L
Sbjct: 85 LPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFL 144
Query: 662 YMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPA 841
+ PWA + LR+LL PIHV+ G I IA+V+ G+ EKL F+L++
Sbjct: 145 FACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTT 204
Query: 842 --YSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 955
Y +LP E VF N+ G+LV+ FG L+ +I+ WKRP+
Sbjct: 205 RPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPE 244
>ref|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sapiens].
Length = 157
Score = 150 bits (378), Expect = 4e-36
Identities = 80/120 (66%), Positives = 82/120 (68%), Gaps = 14/120 (11%)
Frame = +1
Query: 634 LGWTGSC-----HP-LHVT--------AASRFFCLSASLGSTFSPSTSHAHTRLFWTSHL 771
LGW GS HP L VT A+ RFF LSAS+GS FSPS SHAHT LFW HL
Sbjct: 38 LGWDGSALEFNWHPVLMVTGFVFIQGIASFRFFSLSASMGSAFSPSISHAHTCLFWNCHL 97
Query: 772 WNSDCNSTYGSDRETDFCPAISCIQYPSTRRCFHKYLRPSGSGVWGSHFLDSHQTAMETS 951
WNSDCNSTYG DRETDF P SCIQY RRCF KY PS GV G HFLDSHQTAMETS
Sbjct: 98 WNSDCNSTYGIDRETDFFPERSCIQYIPARRCFRKYAWPSDPGVRGPHFLDSHQTAMETS 157
Score = 122 bits (305), Expect = 1e-27
Identities = 58/65 (89%), Positives = 61/65 (93%)
Frame = +2
Query: 272 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF 451
MAMEGY FLALL SALLVGFLSVIF L+WVLHYREGLGWDG+ALEFNWHPVL+VTGFVF
Sbjct: 1 MAMEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVF 60
Query: 452 IQGIA 466
IQGIA
Sbjct: 61 IQGIA 65
>ref|NP_001017916.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 135 bits (341), Expect = 8e-32
Identities = 75/212 (35%), Positives = 108/212 (50%)
Frame = +2
Query: 323 LVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKC 502
L+G V T W+ YR G+ W+ L+FN HP+ +V G +F+QG A++VYR+
Sbjct: 22 LLGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRV--FRNE 78
Query: 503 SKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXX 682
+K K +H L+ FD+H + ++YSLHSW G+ +LY
Sbjct: 79 AKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLV 138
Query: 683 XXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPAYSTLPPE 862
P A SLR+ P H++ G IF + T L+G+ E L+F L YS PE
Sbjct: 139 GFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNL-GGKYSAFEPE 197
Query: 863 GVFTNTFGLLVLVFGALIFWIVTRPQWKRPKE 958
GV N GLL+ FG + +I+TR WKRP +
Sbjct: 198 GVLANVLGLLLACFGGAVLYILTRADWKRPSQ 229
>ref|NP_001017917.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 135 bits (341), Expect = 8e-32
Identities = 75/212 (35%), Positives = 108/212 (50%)
Frame = +2
Query: 323 LVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKC 502
L+G V T W+ YR G+ W+ L+FN HP+ +V G +F+QG A++VYR+
Sbjct: 22 LLGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRV--FRNE 78
Query: 503 SKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXX 682
+K K +H L+ FD+H + ++YSLHSW G+ +LY
Sbjct: 79 AKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLV 138
Query: 683 XXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPAYSTLPPE 862
P A SLR+ P H++ G IF + T L+G+ E L+F L YS PE
Sbjct: 139 GFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNL-GGKYSAFEPE 197
Query: 863 GVFTNTFGLLVLVFGALIFWIVTRPQWKRPKE 958
GV N GLL+ FG + +I+TR WKRP +
Sbjct: 198 GVLANVLGLLLACFGGAVLYILTRADWKRPSQ 229
>ref|NP_001906.3| cytochrome b561 [Homo sapiens].
Length = 251
Score = 135 bits (341), Expect = 8e-32
Identities = 75/212 (35%), Positives = 108/212 (50%)
Frame = +2
Query: 323 LVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKC 502
L+G V T W+ YR G+ W+ L+FN HP+ +V G +F+QG A++VYR+
Sbjct: 22 LLGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRV--FRNE 78
Query: 503 SKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXX 682
+K K +H L+ FD+H + ++YSLHSW G+ +LY
Sbjct: 79 AKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLV 138
Query: 683 XXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPAYSTLPPE 862
P A SLR+ P H++ G IF + T L+G+ E L+F L YS PE
Sbjct: 139 GFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNL-GGKYSAFEPE 197
Query: 863 GVFTNTFGLLVLVFGALIFWIVTRPQWKRPKE 958
GV N GLL+ FG + +I+TR WKRP +
Sbjct: 198 GVLANVLGLLLACFGGAVLYILTRADWKRPSQ 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,236,753
Number of extensions: 1603714
Number of successful extensions: 8696
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8584
Number of HSP's successfully gapped: 9
Length of query: 520
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,770,016
Effective search space: 6100016608
Effective search space used: 6100016608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003211
(1560 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082869.2| cytochrome b reductase 1 [Mus musculus]. 399 e-111
Alignment gi|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus... 181 1e-45
Alignment gi|NP_031831.2| cytochrome b561 [Mus musculus]. 139 6e-33
>ref|NP_082869.2| cytochrome b reductase 1 [Mus musculus].
Length = 290
Score = 399 bits (1025), Expect = e-111
Identities = 199/290 (68%), Positives = 226/290 (77%), Gaps = 5/290 (1%)
Frame = +2
Query: 272 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF 451
MAMEGYRGFL LLVSALLVGFLSVIF LIWVLH+REGLGW+G+ LEFNWHPVL VTGFVF
Sbjct: 1 MAMEGYRGFLGLLVSALLVGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVF 60
Query: 452 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLH 631
IQGIAIIVYRLPWTWKCSKLLMKSIHAGLN F++HN +K+P+MYSLH
Sbjct: 61 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLH 120
Query: 632 SWVGLAAVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTE 811
SWVGL A+ILY+ PWAP SLRA++MPIHVYSGLL+FGTVIATVLMGVTE
Sbjct: 121 SWVGLTALILYIQQLVVGFFVFLLPWAPPSLRAIVMPIHVYSGLLLFGTVIATVLMGVTE 180
Query: 812 KLIFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNRG 991
KL F L+ P+Y + PPEGVFTNT GLL+LVFGALIFWIVTRPQWKRP+EP SV L N G
Sbjct: 181 KLFFVLKHPSYHSFPPEGVFTNTLGLLILVFGALIFWIVTRPQWKRPREPGSVPLQLNGG 240
Query: 992 APE-GAEGTMAVNFGN----MDKSDSELNSEAAARKRNFALDEAGQRSTM 1126
E EG +A++ + D +D+E +SE AARKR L ++GQRSTM
Sbjct: 241 NAECRMEGAIAISSAHSMDAADPADAESSSEGAARKRTLGLADSGQRSTM 290
>ref|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus musculus].
Length = 242
Score = 181 bits (460), Expect = 1e-45
Identities = 87/211 (41%), Positives = 123/211 (58%), Gaps = 2/211 (0%)
Frame = +2
Query: 326 VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKCS 505
+G + ++FT W+ ++R G WDGT L FNWHPVL+V G V + G A +VYRLP +W
Sbjct: 16 LGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYGAASLVYRLPSSWVGP 75
Query: 506 KLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXXX 685
+L K +HA L+ F FHN +I ++YSLHSW+G+ V+L+
Sbjct: 76 RLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWLGITTVVLFACQWFLG 135
Query: 686 XXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPA--YSTLPP 859
PWA LR+LL P+HV+ G I I +V+ G+ EKL F L++ YS+LP
Sbjct: 136 FAVFLLPWASQWLRSLLKPLHVFFGACILSLSITSVISGINEKLFFVLKNATKPYSSLPG 195
Query: 860 EGVFTNTFGLLVLVFGALIFWIVTRPQWKRP 952
E VF N+ GLLV+ FG L+ +++ WKRP
Sbjct: 196 EAVFANSTGLLVVAFGLLVLYVLLASSWKRP 226
>ref|NP_031831.2| cytochrome b561 [Mus musculus].
Length = 250
Score = 139 bits (350), Expect = 6e-33
Identities = 75/212 (35%), Positives = 114/212 (53%)
Frame = +2
Query: 323 LVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKC 502
L+G V T W+ YR G+ W+ ++L+FN HP+ +V G +F+QG A++VYR+ +
Sbjct: 21 LLGLTVVAVTGAWLGLYRGGIAWE-SSLQFNVHPLCMVIGMIFLQGDALLVYRV--FRRE 77
Query: 503 SKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXX 682
+K K +H L+ FD+H + ++YSLHSW G+ +LY
Sbjct: 78 AKRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLV 137
Query: 683 XXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPAYSTLPPE 862
P A SLR+ P H++ G IF + T L+G+ E L+F L S YST PE
Sbjct: 138 GFSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKLGS-KYSTFEPE 196
Query: 863 GVFTNTFGLLVLVFGALIFWIVTRPQWKRPKE 958
GV N GLL++ FG ++ +I+ + WKRP +
Sbjct: 197 GVLANVLGLLLVCFGVVVLYILAQADWKRPSQ 228
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,158,085
Number of extensions: 1339485
Number of successful extensions: 7352
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7261
Number of HSP's successfully gapped: 3
Length of query: 520
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 414
Effective length of database: 12,433,743
Effective search space: 5147569602
Effective search space used: 5147569602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003211
(1560 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa]. 517 e-147
Alignment gi|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent ... 189 4e-48
Alignment gi|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent ... 189 4e-48
Alignment gi|NP_001090991.1| cytochrome b561 [Sus scrofa]. 140 2e-33
>ref|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa].
Length = 285
Score = 517 bits (1332), Expect = e-147
Identities = 259/285 (90%), Positives = 259/285 (90%)
Frame = +2
Query: 272 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF 451
MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF
Sbjct: 1 MAMEGYRGFLALLVSALLVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVF 60
Query: 452 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLH 631
IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNT FDFHNARKIPNMYSLH
Sbjct: 61 IQGIAIIVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNARKIPNMYSLH 120
Query: 632 SWVGLAAVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTE 811
SWVGLAAVILYM PWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTE
Sbjct: 121 SWVGLAAVILYMLQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTE 180
Query: 812 KLIFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNRG 991
KLIFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPN G
Sbjct: 181 KLIFALQSPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPKEPNSVLLHPNGG 240
Query: 992 APEGAEGTMAVNFGNMDKSDSELNSEAAARKRNFALDEAGQRSTM 1126
APEGAEGTMAVNFGNMDKSDSELNSEAAARKRNFALDEAGQRSTM
Sbjct: 241 APEGAEGTMAVNFGNMDKSDSELNSEAAARKRNFALDEAGQRSTM 285
>ref|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform
2 [Sus scrofa].
Length = 242
Score = 189 bits (480), Expect = 4e-48
Identities = 94/224 (41%), Positives = 132/224 (58%), Gaps = 3/224 (1%)
Frame = +2
Query: 293 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 469
G+ L AL +G + ++ T+ W+ ++ +G WDGT L FNWHPVL+VTG V + A
Sbjct: 4 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 63
Query: 470 IVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLA 649
+ YRLP +W KL K HA ++ F+FHN KIPN+YSLHSW+G+
Sbjct: 64 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 123
Query: 650 AVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFAL 829
V L+ PWA + LR+LL PIHV+ G I IA+V+ G+ EKL F+L
Sbjct: 124 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLFFSL 183
Query: 830 Q--SPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 955
+ + +YS LP E VF N+ G+LV+VFG L+ +I+ WKRP+
Sbjct: 184 KNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPE 227
>ref|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform
1 [Sus scrofa].
Length = 242
Score = 189 bits (480), Expect = 4e-48
Identities = 94/224 (41%), Positives = 132/224 (58%), Gaps = 3/224 (1%)
Frame = +2
Query: 293 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 469
G+ L AL +G + ++ T+ W+ ++ +G WDGT L FNWHPVL+VTG V + A
Sbjct: 4 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 63
Query: 470 IVYRLPWTWKCSKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLA 649
+ YRLP +W KL K HA ++ F+FHN KIPN+YSLHSW+G+
Sbjct: 64 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 123
Query: 650 AVILYMXXXXXXXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFAL 829
V L+ PWA + LR+LL PIHV+ G I IA+V+ G+ EKL F+L
Sbjct: 124 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLFFSL 183
Query: 830 Q--SPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 955
+ + +YS LP E VF N+ G+LV+VFG L+ +I+ WKRP+
Sbjct: 184 KNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPE 227
>ref|NP_001090991.1| cytochrome b561 [Sus scrofa].
Length = 252
Score = 140 bits (353), Expect = 2e-33
Identities = 77/210 (36%), Positives = 113/210 (53%)
Frame = +2
Query: 323 LVGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAIIVYRLPWTWKC 502
L+G V T W+ YR G+ W+ +AL+FN HP+ ++ G VF+QG A++VYR+
Sbjct: 23 LLGLTVVAVTGAWLGAYRGGIAWE-SALQFNVHPLCMIIGLVFLQGDALLVYRV--FRNE 79
Query: 503 SKLLMKSIHAGLNTXXXXXXXXXXXXXFDFHNARKIPNMYSLHSWVGLAAVILYMXXXXX 682
+K K +H L+ FD+H + I ++YSLHSW G+ +L++
Sbjct: 80 AKRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLV 139
Query: 683 XXXXXXXPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFALQSPAYSTLPPE 862
P A SLR+ P HV+ G IF + T L+G+ E L+F L YS E
Sbjct: 140 GLGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQL-GTKYSAFESE 198
Query: 863 GVFTNTFGLLVLVFGALIFWIVTRPQWKRP 952
GV N GLL++ FGA++ +I+TR WKRP
Sbjct: 199 GVLANVLGLLLVAFGAVVLYILTRADWKRP 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,247,998
Number of extensions: 1020264
Number of successful extensions: 5867
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5793
Number of HSP's successfully gapped: 4
Length of query: 520
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 417
Effective length of database: 8,779,541
Effective search space: 3661068597
Effective search space used: 3661068597
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003211
(1560 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1336 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1336 bits (674), Expect = 0.0
Identities = 716/732 (97%)
Strand = Plus / Plus
Query: 829 gcaatctcctgcatacagtacccttccaccagaaggtgttttcacaaataccttcggcct 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87075641 gcaatctcctgcatacagtacccttccaccagaaggtgttttcacaaataccttcggcct 87075700
Query: 889 tctggttctggtgtttggggctctcattttttggatagtcaccagaccgcaatggaaacg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87075701 tctggttctggtgtttggggctctcattttttggatagtcaccagaccgcaatggaaacg 87075760
Query: 949 tcctaaggaaccaaattctgtccttcttcacccaaatagaggcgctccagagggagccga 1008
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 87075761 tcctaaggaaccaaattctgtccttcttcacccaaatggaggcgctccagagggagccga 87075820
Query: 1009 aggtaccatggcagtgaactttggcaacatggacaaatcagattcagagttaaacagtga 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87075821 aggtaccatggcagtgaactttggcaacatggacaaatcagattcagagttaaacagtga 87075880
Query: 1069 agcagcagcaaggaaaagaaacttcgccctggatgaggctggacagagatccaccatgta 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87075881 agcagcagcaaggaaaagaaacttcgccctggatgaggctggacagagatccaccatgta 87075940
Query: 1129 aatggggtggaggggtaaccaggtaacatggctttttcaaacaagctctagagcttagct 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87075941 aatggggtggaggggtaaccaggtaacatggctttttcaaacaagctctagagcttagct 87076000
Query: 1189 tctcctattcagctgttagatgattgagctccacagagccaatatttattctaatcatga 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87076001 tctcctattcagctgttagatgattgagctccacagagccaatatttattctaatcatga 87076060
Query: 1249 agtaggatttcttggaaatgtttgtattgattgaggcctatgaacttaacctgaattnga 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 87076061 agtaggatttcttggaaatgtttgtattgattgaggcctatgaacttaacctgaattgaa 87076120
Query: 1309 agggagatgatcagtgtaaataacagtggatataaattggggttctgttacctcttnntc 1368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 87076121 agggagatgatcagtgtaaataacagtggatataaattggggttctgttacctctttctt 87076180
Query: 1369 tgtgaggaccaaagcatttagcatcgtgccttgtgtagaaccaatgacgagaatgtttct 1428
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 87076181 gttgaggaccaaagcatttagcatcgtgccttgtgtagaacgaatgacgagaatgtttct 87076240
Query: 1429 atcagtggntaaatgcgantaactgacaccttccccaggctcttgtcacgcagtcattct 1488
|||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 87076241 atcagttggtaaatgcgataaactgacaccttccccaggctcttgtcacgcagtcattct 87076300
Query: 1489 ctgttaattctgggagtctagttctaaaagttcggaatcangtcatgaagatctgggaca 1548
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 87076301 ctgttaattctgggagtctagttctaaagtttcggaatcaggtcatgaagatctgggaca 87076360
Query: 1549 gggtttatgctg 1560
||||||||||||
Sbjct: 87076361 gggtttatgctg 87076372
Score = 920 bits (464), Expect = 0.0
Identities = 464/464 (100%)
Strand = Plus / Plus
Query: 1 gcaaattcagatgctgggccaggaggggcgcagcgagagctctgggcggctacgggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033508 gcaaattcagatgctgggccaggaggggcgcagcgagagctctgggcggctacgggatcc 87033567
Query: 61 cgagggtggggctggtctctgagcgaccgccagctgcgcaccaccgaggccccgcatccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033568 cgagggtggggctggtctctgagcgaccgccagctgcgcaccaccgaggccccgcatccc 87033627
Query: 121 cgacaggcccgcgagaaagcccctcccccgggcggagacagcttcaagaagtcgacgccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033628 cgacaggcccgcgagaaagcccctcccccgggcggagacagcttcaagaagtcgacgccg 87033687
Query: 181 cgtcccgccgcggggccagtacccagaggctgcagcggccgccgcttcgtcgagttcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033688 cgtcccgccgcggggccagtacccagaggctgcagcggccgccgcttcgtcgagttcctg 87033747
Query: 241 cggctgccaccgtgcggagtatggggcactgatggccatggaaggttacaggggtttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033748 cggctgccaccgtgcggagtatggggcactgatggccatggaaggttacaggggtttcct 87033807
Query: 301 ggcgctgctggtgtcggctctgctcgtcggcttcctgtccgtgatcttcaccctcatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033808 ggcgctgctggtgtcggctctgctcgtcggcttcctgtccgtgatcttcaccctcatttg 87033867
Query: 361 ggtcctccactaccgagaggggctcggctgggacgggactgcgctggagtttaactggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033868 ggtcctccactaccgagaggggctcggctgggacgggactgcgctggagtttaactggca 87033927
Query: 421 cccagtgctcatagtcaccggcttcgtcttcatccagggcatcg 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87033928 cccagtgctcatagtcaccggcttcgtcttcatccagggcatcg 87033971
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 464 gccatcatcgtatacagattgccgtggacctggaaatgcagcaagctcctgatgaaatcc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87046947 gccatcatcgtatacagattgccgtggacctggaaatgcagcaagctcctgatgaaatcc 87047006
Query: 524 atccacgcagggttgaatactgttgctgccattcttgcaattatttctctcgtggccgtt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87047007 atccacgcagggttgaatactgttgctgccattcttgcaattatttctctcgtggccgtt 87047066
Query: 584 tttgatttccacaatgccagaaaaatccccaatatgtacagtctgcatagctgggttgga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87047067 tttgatttccacaatgccagaaaaatccccaatatgtacagtctgcatagctgggttgga 87047126
Query: 644 ctggcagctgtcatcctctacatgttacag 673
||||||||||||||||||||||||||||||
Sbjct: 87047127 ctggcagctgtcatcctctacatgttacag 87047156
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 692 gtctttctgcttccttgggctccactttctctccgagcacttctcatgcccatacacgtt 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87074645 gtctttctgcttccttgggctccactttctctccgagcacttctcatgcccatacacgtt 87074704
Query: 752 tattctggacttctcatctttggaacagtgattgcaacagtacttatgggagtgaccgag 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87074705 tattctggacttctcatctttggaacagtgattgcaacagtacttatgggagtgaccgag 87074764
Query: 812 aaactgatttttgccctg 829
||||||||||||||||||
Sbjct: 87074765 aaactgatttttgccctg 87074782
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,073,004
Number of extensions: 175
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 4
Length of query: 1560
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1539
Effective length of database: 2,808,413,156
Effective search space: 4322147847084
Effective search space used: 4322147847084
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)