Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003212
(1056 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029572.1| actin-related protein 10 [Bos taurus]. 611 e-175
Alignment gi|NP_001028790.1| actin, cytoplasmic 2 [Bos taurus]. 99 6e-21
Alignment gi|NP_001029757.1| actin, alpha cardiac muscle 1 [Bos taurus]. 99 8e-21
Alignment gi|NP_776650.1| actin, alpha skeletal muscle [Bos taurus]. 98 1e-20
Alignment gi|NP_776404.2| actin, cytoplasmic 1 [Bos taurus]. 98 1e-20
Alignment gi|NP_001013610.1| actin, gamma-enteric smooth muscle [Bos taur... 98 1e-20
Alignment gi|NP_001029674.1| actin, aortic smooth muscle [Bos taurus]. 97 2e-20
Alignment gi|XP_002696363.1| PREDICTED: beta actin-like [Bos taurus]. 95 9e-20
Alignment gi|XP_001249299.2| PREDICTED: beta actin [Bos taurus]. 95 9e-20
Alignment gi|XP_002699559.1| PREDICTED: actin-related protein T1-like [Bo... 86 6e-17
>ref|NP_001029572.1| actin-related protein 10 [Bos taurus].
Length = 417
Score = 611 bits (1575), Expect = e-175
Identities = 305/312 (97%), Positives = 308/312 (98%)
Frame = +3
Query: 120 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN 299
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPI+VVQYNIN
Sbjct: 1 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIRVVQYNIN 60
Query: 300 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 479
TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL
Sbjct: 61 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 120
Query: 480 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 659
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
Sbjct: 121 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 180
Query: 660 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP 839
EQCTVDTGAAKEQSLPSVMGSIPEG+LEDIKVRTCFVSDL RGL IQAAKFNIDGNTERP
Sbjct: 181 EQCTVDTGAAKEQSLPSVMGSIPEGILEDIKVRTCFVSDLKRGLNIQAAKFNIDGNTERP 240
Query: 840 SPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QDNEEKSVATLILDSLMQCPIDTRKALA 1019
SPPPNVDYPLDGEKILHVLGSIRDSVVEILF QDNEEKSVATLILDSLMQCPIDTRK LA
Sbjct: 241 SPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQCPIDTRKQLA 300
Query: 1020 ENLVIIGGTSML 1055
ENLV+IGGTSML
Sbjct: 301 ENLVVIGGTSML 312
>ref|NP_001028790.1| actin, cytoplasmic 2 [Bos taurus].
Length = 375
Score = 99.0 bits (245), Expect = 6e-21
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E A+VID G K GFAG+ PR + PS++ + A +
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ DIK + C+V+ D + + A
Sbjct: 184 DLTDYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAA 231
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 232 SSSSLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GGT+M
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_001029757.1| actin, alpha cardiac muscle 1 [Bos taurus].
Length = 377
Score = 98.6 bits (244), Expect = 8e-21
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|NP_776650.1| actin, alpha skeletal muscle [Bos taurus].
Length = 377
Score = 98.2 bits (243), Expect = 1e-20
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVMSGGTTM 307
>ref|NP_776404.2| actin, cytoplasmic 1 [Bos taurus].
Length = 375
Score = 97.8 bits (242), Expect = 1e-20
Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 26/323 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIKV 281
A+V+D G K GFAG+ PR + PS++ + A + I
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 282 VQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F P++ +A +++L G + +V+D G + +PIYEG + + L L G+ L
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKF 812
L L E+ T A+ + ++ DIK + C+V+ D + + A+
Sbjct: 187 DYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAASSS 234
Query: 813 NIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLILDSL 983
+++ + E P DG+ I +G+ R E LF E + +S+
Sbjct: 235 SLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTFNSI 282
Query: 984 MQCPIDTRKALAENLVIIGGTSM 1052
M+C +D RK L N V+ GGT+M
Sbjct: 283 MKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_001013610.1| actin, gamma-enteric smooth muscle [Bos taurus].
Length = 376
Score = 97.8 bits (242), Expect = 1e-20
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 5 ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 65 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 124
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 125 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 184
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 185 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 232
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 233 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 280
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 281 NSIMKCDIDIRKDLYANNVLSGGTTM 306
>ref|NP_001029674.1| actin, aortic smooth muscle [Bos taurus].
Length = 377
Score = 97.1 bits (240), Expect = 2e-20
Identities = 84/326 (25%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
+ TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 DSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|XP_002696363.1| PREDICTED: beta actin-like [Bos taurus].
Length = 376
Score = 95.1 bits (235), Expect = 9e-20
Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 26/329 (7%)
Frame = +3
Query: 144 SGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGM 263
S E +A+V+D G K GF G+ PR + PS++ + A
Sbjct: 2 SDDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQS 61
Query: 264 PKPIKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLT 437
+ I ++Y I + ++ +++ H ++ L V P + +++ E+ L P RE +T
Sbjct: 62 KRGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMT 121
Query: 438 RVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPL 617
+++F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L
Sbjct: 122 QIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 618 GGKALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLK 794
G+ L L L E+ T A+ + ++ D+K + C+V+ D + +
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAERE------------IVRDVKEKLCYVALDFEQEMV 229
Query: 795 IQAAKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVAT 965
AA +++ + E P DG+ I +G+ R E +F E +
Sbjct: 230 STAASSSLERSYELP----------DGQVI--TIGNERFRCPEAIFQPSFLGIESSGIHE 277
Query: 966 LILDSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GG++M
Sbjct: 278 TTFNSIMKCDVDIRKDLYANTVLSGGSTM 306
>ref|XP_001249299.2| PREDICTED: beta actin [Bos taurus].
Length = 376
Score = 95.1 bits (235), Expect = 9e-20
Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 26/329 (7%)
Frame = +3
Query: 144 SGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGM 263
S E +A+V+D G K GF G+ PR + PS++ + A
Sbjct: 2 SDDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQS 61
Query: 264 PKPIKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLT 437
+ I ++Y I + ++ +++ H ++ L V P + +++ E+ L P RE +T
Sbjct: 62 KRGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMT 121
Query: 438 RVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPL 617
+++F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L
Sbjct: 122 QIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 618 GGKALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLK 794
G+ L L L E+ T A+ + ++ D+K + C+V+ D + +
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAERE------------IVRDVKEKLCYVALDFEQEMV 229
Query: 795 IQAAKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVAT 965
AA +++ + E P DG+ I +G+ R E +F E +
Sbjct: 230 STAASSSLERSYELP----------DGQVI--TIGNERFRCPEAIFQPSFLGIESSGIHE 277
Query: 966 LILDSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GG++M
Sbjct: 278 TTFNSIMKCDVDIRKDLYANTVLSGGSTM 306
>ref|XP_002699559.1| PREDICTED: actin-related protein T1-like [Bos taurus].
Length = 377
Score = 85.9 bits (211), Expect = 6e-17
Identities = 82/324 (25%), Positives = 139/324 (42%), Gaps = 27/324 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVI--KKAGMPKP-IKVVQYNINTEELYSY---- 320
AV+ D G K G +GE GPR +I SV+ K M P Y + L+ Y
Sbjct: 11 AVIFDNGSGLCKVGMSGEIGPRHVISSVVGHPKFNMALPEANQKNYVVGENALFKYEALQ 70
Query: 321 ---------------LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
+++ L+ L V P R V++ E L P RE T V+F+
Sbjct: 71 LYYPIERGLVTRWDDMEKLWKYLFEWELGVKPCQRPVLMTEPSLNPRETREKTTEVMFET 130
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F VP+ L+ ++AL + +V+D G + +PI+EG + + L + G+ +
Sbjct: 131 FNVPAFYLSNHAVVALYASAAVTGLVVDSGDGITCTVPIFEGYSLPHAVTKLYVAGRDIT 190
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFN 815
+ L LL A + P ++ + +++DIK C+V+
Sbjct: 191 EHLTRLLL---------ASGCNYPCILN---KALVDDIKETLCYVA-------------- 224
Query: 816 IDGNTERPSPPPNV--DYPLDGEKILHVLGSIRDSVVEILF*QDN---EEKSVATLILDS 980
++ E P + +Y L ++H LG V EILF D+ ++ ++ S
Sbjct: 225 LEPEKELCKKPEEIMKEYKLPDGNVIH-LGDQLYQVPEILFAPDHLGVHNPGLSKMVSSS 283
Query: 981 LMQCPIDTRKALAENLVIIGGTSM 1052
+M+C D +K L +V+ GGT++
Sbjct: 284 IMKCDTDIQKNLFAEIVLSGGTTL 307
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,745,550
Number of extensions: 972650
Number of successful extensions: 2864
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 2820
Number of HSP's successfully gapped: 28
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003212
(1056 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851943.1| PREDICTED: similar to Actin-related protein 10 ... 608 e-174
Alignment gi|XP_864725.1| PREDICTED: similar to Actin-related protein 10 ... 524 e-149
Alignment gi|XP_537459.2| PREDICTED: similar to Actin-related protein 10 ... 214 1e-55
Alignment gi|XP_848940.1| PREDICTED: similar to Actin, alpha skeletal mus... 99 7e-21
Alignment gi|XP_535424.1| PREDICTED: similar to Actin, alpha cardiac (Alp... 99 9e-21
Alignment gi|NP_001182774.1| actin, cytoplasmic 1 [Canis lupus familiaris]. 98 2e-20
Alignment gi|XP_533002.2| PREDICTED: similar to Actin, gamma-enteric smoo... 98 2e-20
Alignment gi|XP_861856.1| PREDICTED: similar to cytoplasmic beta-actin is... 97 2e-20
Alignment gi|XP_534781.2| PREDICTED: similar to Actin, aortic smooth musc... 97 3e-20
Alignment gi|XP_533132.2| PREDICTED: hypothetical protein XP_533132 [Cani... 96 4e-20
>ref|XP_851943.1| PREDICTED: similar to Actin-related protein 10 (hARP11) isoform 2
[Canis familiaris].
Length = 417
Score = 608 bits (1568), Expect = e-174
Identities = 304/312 (97%), Positives = 308/312 (98%)
Frame = +3
Query: 120 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN 299
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIK+AG+PKPIKVVQYNIN
Sbjct: 1 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGLPKPIKVVQYNIN 60
Query: 300 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 479
TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL
Sbjct: 61 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 120
Query: 480 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 659
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
Sbjct: 121 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 180
Query: 660 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP 839
EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDL RGLKIQAAKFNIDGNTERP
Sbjct: 181 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLKRGLKIQAAKFNIDGNTERP 240
Query: 840 SPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QDNEEKSVATLILDSLMQCPIDTRKALA 1019
PPPNVDYPLDGEKILHVLGSIRDSVVEILF QDNEEKSVATLILDSL+QCPIDTRK LA
Sbjct: 241 LPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLIQCPIDTRKQLA 300
Query: 1020 ENLVIIGGTSML 1055
ENLV+IGGTSML
Sbjct: 301 ENLVVIGGTSML 312
>ref|XP_864725.1| PREDICTED: similar to Actin-related protein 10 (hARP11) isoform 3
[Canis familiaris].
Length = 263
Score = 524 bits (1350), Expect = e-149
Identities = 259/263 (98%), Positives = 261/263 (99%)
Frame = +3
Query: 120 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN 299
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIK+AG+PKPIKVVQYNIN
Sbjct: 1 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGLPKPIKVVQYNIN 60
Query: 300 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 479
TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL
Sbjct: 61 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 120
Query: 480 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 659
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
Sbjct: 121 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 180
Query: 660 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP 839
EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDL RGLKIQAAKFNIDGNTERP
Sbjct: 181 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLKRGLKIQAAKFNIDGNTERP 240
Query: 840 SPPPNVDYPLDGEKILHVLGSIR 908
PPPNVDYPLDGEKILHVLGSIR
Sbjct: 241 LPPPNVDYPLDGEKILHVLGSIR 263
>ref|XP_537459.2| PREDICTED: similar to Actin-related protein 10 (hARP11) isoform 1
[Canis familiaris].
Length = 219
Score = 214 bits (545), Expect = 1e-55
Identities = 108/114 (94%), Positives = 110/114 (96%)
Frame = +3
Query: 714 MGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERPSPPPNVDYPLDGEKILHV 893
MGSIPEGVLEDIKVRTCFVSDL RGLKIQAAKFNIDGNTERP PPPNVDYPLDGEKILHV
Sbjct: 1 MGSIPEGVLEDIKVRTCFVSDLKRGLKIQAAKFNIDGNTERPLPPPNVDYPLDGEKILHV 60
Query: 894 LGSIRDSVVEILF*QDNEEKSVATLILDSLMQCPIDTRKALAENLVIIGGTSML 1055
LGSIRDSVVEILF QDNEEKSVATLILDSL+QCPIDTRK LAENLV+IGGTSML
Sbjct: 61 LGSIRDSVVEILFEQDNEEKSVATLILDSLIQCPIDTRKQLAENLVVIGGTSML 114
>ref|XP_848940.1| PREDICTED: similar to Actin, alpha skeletal muscle (Alpha-actin 1)
isoform 2 [Canis familiaris].
Length = 342
Score = 99.0 bits (245), Expect = 7e-21
Identities = 87/304 (28%), Positives = 138/304 (45%), Gaps = 4/304 (1%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNINTEELYSYLKEF 332
E TA+V D G K GFAG+ PR + PS++ G P+ V+ + E+++
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIV---GRPRHQGVM---VGMEKIW------ 53
Query: 333 IHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTL 512
H ++ L V P + ++ E+ L P RE +T+++F+ F VP++ +A +++L
Sbjct: 54 -HHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS 112
Query: 513 GINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAK 692
G + +VLD G + +PIYEG + + L L G+ L T L + + G
Sbjct: 113 GRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL-----TDYLMKILTERGY-- 165
Query: 693 EQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERPSPPPNVDYPL- 869
S + + + DIK + C+V A F T S Y L
Sbjct: 166 -----SFVTTAEREIARDIKEKLCYV----------ALDFENKMATAASSSSQEKSYKLS 210
Query: 870 DGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLILDSLMQCPIDTRKALAENLVIIG 1040
DG+ I +G+ R E LF E + +S+M+C ID RK L N V+ G
Sbjct: 211 DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSG 268
Query: 1041 GTSM 1052
GT+M
Sbjct: 269 GTTM 272
>ref|XP_535424.1| PREDICTED: similar to Actin, alpha cardiac (Alpha-cardiac actin)
isoform 3 [Canis familiaris].
Length = 377
Score = 98.6 bits (244), Expect = 9e-21
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|NP_001182774.1| actin, cytoplasmic 1 [Canis lupus familiaris].
Length = 375
Score = 97.8 bits (242), Expect = 2e-20
Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 26/323 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIKV 281
A+V+D G K GFAG+ PR + PS++ + A + I
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 282 VQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F P++ +A +++L G + +V+D G + +PIYEG + + L L G+ L
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKF 812
L L E+ T A+ + ++ DIK + C+V+ D + + A+
Sbjct: 187 DYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAASSS 234
Query: 813 NIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*Q---DNEEKSVATLILDSL 983
+++ + E P DG+ I +G+ R E LF E + +S+
Sbjct: 235 SLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLSMESCGIHETTFNSI 282
Query: 984 MQCPIDTRKALAENLVIIGGTSM 1052
M+C +D RK L N V+ GGT+M
Sbjct: 283 MKCDVDIRKDLYANTVLSGGTTM 305
>ref|XP_533002.2| PREDICTED: similar to Actin, gamma-enteric smooth muscle (Smooth
muscle gamma actin) (Alpha-actin 3) [Canis familiaris].
Length = 376
Score = 97.8 bits (242), Expect = 2e-20
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 5 ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 65 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 124
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 125 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 184
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 185 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 232
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 233 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 280
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 281 NSIMKCDIDIRKDLYANNVLSGGTTM 306
>ref|XP_861856.1| PREDICTED: similar to cytoplasmic beta-actin isoform 9 [Canis
familiaris].
Length = 376
Score = 97.4 bits (241), Expect = 2e-20
Identities = 80/324 (24%), Positives = 149/324 (45%), Gaps = 27/324 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIKV 281
A+V+D G K GFAG+ PR + PS++ + A + I
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 282 VQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F P++ +A +++L G + +V+D G + +PIYEG + + L L G+ L
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKF 812
L L E+ T A+ + ++ DIK + C+V+ D + + A+
Sbjct: 187 DYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAASSS 234
Query: 813 NIDGNTERPSPPPNVDYPLDGEKILHVLGSIR----DSVVEILF*QDNEEKSVATLILDS 980
+++ + E P DG+ I +G+ R +++ F E + +S
Sbjct: 235 SLEKSYELP----------DGQVI--TIGNERFRCPEALFHFCFLPGMESCGIHETTFNS 282
Query: 981 LMQCPIDTRKALAENLVIIGGTSM 1052
+M+C +D RK L N V+ GGT+M
Sbjct: 283 IMKCDVDIRKDLYANTVLSGGTTM 306
>ref|XP_534781.2| PREDICTED: similar to Actin, aortic smooth muscle (Alpha-actin 2)
[Canis familiaris].
Length = 377
Score = 97.1 bits (240), Expect = 3e-20
Identities = 84/326 (25%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
+ TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 DSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|XP_533132.2| PREDICTED: hypothetical protein XP_533132 [Canis familiaris].
Length = 375
Score = 96.3 bits (238), Expect = 4e-20
Identities = 83/326 (25%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E A+VID G K GFAG+ PR + PS++ + A +
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + V++ E+ L P E +T+++
Sbjct: 64 ILTLKYPIEHGIVTNWEDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKTNGEKMTQIM 123
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ DIK + C+V+ D + + A
Sbjct: 184 DLTDYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAA 231
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 232 SSSSLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GGT+M
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGTTM 305
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,418,044
Number of extensions: 1009668
Number of successful extensions: 3079
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 3034
Number of HSP's successfully gapped: 36
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003212
(1056 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060947.1| actin-related protein 10 [Homo sapiens]. 600 e-172
Alignment gi|NP_001186883.1| actin, cytoplasmic 2 [Homo sapiens]. 99 7e-21
Alignment gi|NP_001186822.1| actin, gamma-enteric smooth muscle isoform 2... 99 7e-21
Alignment gi|NP_001605.1| actin, cytoplasmic 2 [Homo sapiens]. 99 7e-21
Alignment gi|NP_005150.1| actin, alpha cardiac muscle 1 proprotein [Homo ... 99 9e-21
Alignment gi|NP_001091.1| actin, alpha skeletal muscle [Homo sapiens]. 98 1e-20
Alignment gi|NP_001092.1| actin, cytoplasmic 1 [Homo sapiens]. 98 1e-20
Alignment gi|NP_001606.1| actin, gamma-enteric smooth muscle isoform 1 pr... 98 1e-20
Alignment gi|NP_001604.1| actin, aortic smooth muscle [Homo sapiens]. 97 2e-20
Alignment gi|NP_001135417.1| actin, aortic smooth muscle [Homo sapiens]. 97 2e-20
>ref|NP_060947.1| actin-related protein 10 [Homo sapiens].
Length = 417
Score = 600 bits (1547), Expect = e-172
Identities = 296/312 (94%), Positives = 305/312 (97%)
Frame = +3
Query: 120 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN 299
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIK+AGMPKP++VVQYNIN
Sbjct: 1 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMPKPVRVVQYNIN 60
Query: 300 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 479
TEELYSYLKEFIHILYFRHLLVNPRDRRVV+IESVLCPSHFRETLTRVLFKYFEVPSVLL
Sbjct: 61 TEELYSYLKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLL 120
Query: 480 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 659
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
Sbjct: 121 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 180
Query: 660 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP 839
EQCTVDT AKEQSLPSVMGS+PEGVLEDIK RTCFVSDL RGLKIQAAKFNIDGN ERP
Sbjct: 181 EQCTVDTSVAKEQSLPSVMGSVPEGVLEDIKARTCFVSDLKRGLKIQAAKFNIDGNNERP 240
Query: 840 SPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QDNEEKSVATLILDSLMQCPIDTRKALA 1019
SPPPNVDYPLDGEKILH+LGSIRDSVVEILF QDNEE+SVATLILDSL+QCPIDTRK LA
Sbjct: 241 SPPPNVDYPLDGEKILHILGSIRDSVVEILFEQDNEEQSVATLILDSLIQCPIDTRKQLA 300
Query: 1020 ENLVIIGGTSML 1055
ENLV+IGGTSML
Sbjct: 301 ENLVVIGGTSML 312
>ref|NP_001186883.1| actin, cytoplasmic 2 [Homo sapiens].
Length = 375
Score = 99.0 bits (245), Expect = 7e-21
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E A+VID G K GFAG+ PR + PS++ + A +
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ DIK + C+V+ D + + A
Sbjct: 184 DLTDYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAA 231
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 232 SSSSLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GGT+M
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_001186822.1| actin, gamma-enteric smooth muscle isoform 2 precursor [Homo
sapiens].
Length = 333
Score = 99.0 bits (245), Expect = 7e-21
Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 4/304 (1%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNINTEELYSYLKEF 332
E TA+V D G K GFAG+ PR + PS++ G P+ +
Sbjct: 5 ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIV---GRPR------------------HQI 43
Query: 333 IHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTL 512
H ++ L V P + ++ E+ L P RE +T+++F+ F VP++ +A +++L
Sbjct: 44 WHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS 103
Query: 513 GINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAK 692
G + +VLD G + +PIYEG + + L L G+ L T L + + G
Sbjct: 104 GRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL-----TDYLMKILTERGY-- 156
Query: 693 EQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKFNIDGNTERPSPPPNVDYPL 869
S + + ++ DIK + C+V+ D + A+ +++ + E P
Sbjct: 157 -----SFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP---------- 201
Query: 870 DGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLILDSLMQCPIDTRKALAENLVIIG 1040
DG+ I +G+ R E LF E + +S+M+C ID RK L N V+ G
Sbjct: 202 DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 259
Query: 1041 GTSM 1052
GT+M
Sbjct: 260 GTTM 263
>ref|NP_001605.1| actin, cytoplasmic 2 [Homo sapiens].
Length = 375
Score = 99.0 bits (245), Expect = 7e-21
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E A+VID G K GFAG+ PR + PS++ + A +
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ DIK + C+V+ D + + A
Sbjct: 184 DLTDYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAA 231
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 232 SSSSLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GGT+M
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_005150.1| actin, alpha cardiac muscle 1 proprotein [Homo sapiens].
Length = 377
Score = 98.6 bits (244), Expect = 9e-21
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|NP_001091.1| actin, alpha skeletal muscle [Homo sapiens].
Length = 377
Score = 98.2 bits (243), Expect = 1e-20
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVMSGGTTM 307
>ref|NP_001092.1| actin, cytoplasmic 1 [Homo sapiens].
Length = 375
Score = 97.8 bits (242), Expect = 1e-20
Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 26/323 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIKV 281
A+V+D G K GFAG+ PR + PS++ + A + I
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 282 VQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F P++ +A +++L G + +V+D G + +PIYEG + + L L G+ L
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKF 812
L L E+ T A+ + ++ DIK + C+V+ D + + A+
Sbjct: 187 DYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAASSS 234
Query: 813 NIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLILDSL 983
+++ + E P DG+ I +G+ R E LF E + +S+
Sbjct: 235 SLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTFNSI 282
Query: 984 MQCPIDTRKALAENLVIIGGTSM 1052
M+C +D RK L N V+ GGT+M
Sbjct: 283 MKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_001606.1| actin, gamma-enteric smooth muscle isoform 1 precursor [Homo
sapiens].
Length = 376
Score = 97.8 bits (242), Expect = 1e-20
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 5 ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 65 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 124
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 125 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 184
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 185 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 232
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 233 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 280
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 281 NSIMKCDIDIRKDLYANNVLSGGTTM 306
>ref|NP_001604.1| actin, aortic smooth muscle [Homo sapiens].
Length = 377
Score = 97.1 bits (240), Expect = 2e-20
Identities = 84/326 (25%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
+ TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 DSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|NP_001135417.1| actin, aortic smooth muscle [Homo sapiens].
Length = 377
Score = 97.1 bits (240), Expect = 2e-20
Identities = 84/326 (25%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
+ TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 DSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,777,431
Number of extensions: 995755
Number of successful extensions: 2963
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 2922
Number of HSP's successfully gapped: 33
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003212
(1056 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062759.2| actin-related protein 10 [Mus musculus]. 601 e-172
Alignment gi|XP_003084637.1| PREDICTED: actin, cytoplasmic 2-like [Mus mu... 99 6e-21
Alignment gi|NP_033739.1| actin, cytoplasmic 2 [Mus musculus]. 99 6e-21
Alignment gi|NP_033738.1| actin, alpha cardiac muscle 1 [Mus musculus]. 99 7e-21
Alignment gi|NP_033736.1| actin, alpha skeletal muscle [Mus musculus]. 98 9e-21
Alignment gi|NP_031419.1| actin, cytoplasmic 1 [Mus musculus]. 98 1e-20
Alignment gi|NP_033740.2| actin, gamma-enteric smooth muscle [Mus musculu... 98 1e-20
Alignment gi|NP_031418.1| actin, aortic smooth muscle [Mus musculus]. 97 2e-20
Alignment gi|NP_780706.1| beta-actin-like protein 2 [Mus musculus]. 94 1e-19
Alignment gi|NP_033741.1| actin-like protein 7A [Mus musculus]. 91 1e-18
>ref|NP_062759.2| actin-related protein 10 [Mus musculus].
Length = 417
Score = 601 bits (1550), Expect = e-172
Identities = 300/312 (96%), Positives = 306/312 (98%)
Frame = +3
Query: 120 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN 299
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIK+AGM KPIKVVQYNIN
Sbjct: 1 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMSKPIKVVQYNIN 60
Query: 300 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 479
TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL
Sbjct: 61 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 120
Query: 480 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 659
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIP+LNCWGALPLGGKALHKELETQLL
Sbjct: 121 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPILNCWGALPLGGKALHKELETQLL 180
Query: 660 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP 839
EQCTVDTGAAK QSLPSVMGS+PEGVLEDIKVRTCFVSDL RGL+IQAAKFNIDGN ERP
Sbjct: 181 EQCTVDTGAAKGQSLPSVMGSVPEGVLEDIKVRTCFVSDLKRGLQIQAAKFNIDGNNERP 240
Query: 840 SPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QDNEEKSVATLILDSLMQCPIDTRKALA 1019
+PPPNVDYPLDGEKILHVLGSIRDSVVEILF QDNEEKSVATLILDSL+QCPIDTRK LA
Sbjct: 241 TPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLLQCPIDTRKQLA 300
Query: 1020 ENLVIIGGTSML 1055
ENLVIIGGTSML
Sbjct: 301 ENLVIIGGTSML 312
>ref|XP_003084637.1| PREDICTED: actin, cytoplasmic 2-like [Mus musculus].
Length = 389
Score = 99.0 bits (245), Expect = 6e-21
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E A+VID G K GFAG+ PR + PS++ + A +
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ DIK + C+V+ D + + A
Sbjct: 184 DLTDYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAA 231
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 232 SSSSLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GGT+M
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_033739.1| actin, cytoplasmic 2 [Mus musculus].
Length = 375
Score = 99.0 bits (245), Expect = 6e-21
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E A+VID G K GFAG+ PR + PS++ + A +
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ DIK + C+V+ D + + A
Sbjct: 184 DLTDYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAA 231
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 232 SSSSLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GGT+M
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_033738.1| actin, alpha cardiac muscle 1 [Mus musculus].
Length = 377
Score = 98.6 bits (244), Expect = 7e-21
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|NP_033736.1| actin, alpha skeletal muscle [Mus musculus].
Length = 377
Score = 98.2 bits (243), Expect = 9e-21
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVMSGGTTM 307
>ref|NP_031419.1| actin, cytoplasmic 1 [Mus musculus].
Length = 375
Score = 97.8 bits (242), Expect = 1e-20
Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 26/323 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIKV 281
A+V+D G K GFAG+ PR + PS++ + A + I
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 282 VQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F P++ +A +++L G + +V+D G + +PIYEG + + L L G+ L
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKF 812
L L E+ T A+ + ++ DIK + C+V+ D + + A+
Sbjct: 187 DYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAASSS 234
Query: 813 NIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLILDSL 983
+++ + E P DG+ I +G+ R E LF E + +S+
Sbjct: 235 SLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTFNSI 282
Query: 984 MQCPIDTRKALAENLVIIGGTSM 1052
M+C +D RK L N V+ GGT+M
Sbjct: 283 MKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_033740.2| actin, gamma-enteric smooth muscle [Mus musculus].
Length = 376
Score = 97.8 bits (242), Expect = 1e-20
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 5 ETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 65 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 124
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 125 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 184
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 185 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 232
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 233 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 280
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 281 NSIMKCDIDIRKDLYANNVLSGGTTM 306
>ref|NP_031418.1| actin, aortic smooth muscle [Mus musculus].
Length = 377
Score = 97.1 bits (240), Expect = 2e-20
Identities = 84/326 (25%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
+ TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 DSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|NP_780706.1| beta-actin-like protein 2 [Mus musculus].
Length = 376
Score = 94.4 bits (233), Expect = 1e-19
Identities = 79/326 (24%), Positives = 150/326 (46%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V+D G K GF G+ PR + PS++ + A +
Sbjct: 5 ELTALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRG 64
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ + ++ L V P + +++ E+ L P RE +T+++
Sbjct: 65 ILTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIM 124
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 125 FEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ D+K + C+V+ D + + A
Sbjct: 185 DLTDYLMKILTERGYNFTTTAERE------------IVRDVKEKLCYVALDFEQEMVTAA 232
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
A +++ + E P DG+ I +G+ R E +F E + +
Sbjct: 233 ASSSLERSYELP----------DGQVI--TIGNERFRCPEAIFQPSFLGIESRGIHETTF 280
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GG++M
Sbjct: 281 NSIMKCDVDIRKDLFANTVLSGGSTM 306
>ref|NP_033741.1| actin-like protein 7A [Mus musculus].
Length = 440
Score = 91.3 bits (225), Expect = 1e-18
Identities = 86/327 (26%), Positives = 143/327 (43%), Gaps = 29/327 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMP------------------------K 269
AVV+DLG F KCGFAG P I + + K M K
Sbjct: 76 AVVVDLGTGFCKCGFAGLPKPTHKISTTVGKPYMETAKTGDNRKETFVGHELFNPDIHLK 135
Query: 270 PIKVVQYNINTEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLF 449
+ +++ I + + +++ L+ + + + P + V+V + L P RE +LF
Sbjct: 136 LVNPLRHGIIVD--WDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLF 193
Query: 450 KYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKA 629
+ F P++ +A +++ + G S +V++ G+ S V+PIYEG P+ + G L G
Sbjct: 194 ETFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAG-- 251
Query: 630 LHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAA 806
+L T L+ E L G++EDIK R CFV+ D KI
Sbjct: 252 --SDLTTYLMNLMNNSGKHFSEDHL---------GIVEDIKTRCCFVALDPIEEKKI--- 297
Query: 807 KFNIDGNTERPSPPPNVDYPL-DGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
P+P + Y L DG++I LG R E+ F + + + T +
Sbjct: 298 ----------PAPEHEIHYTLPDGKEIR--LGQERFLCSEMFFKPSLIKSMQLGLHTQTV 345
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSML 1055
L +C I ++ L N+++ GG++ML
Sbjct: 346 SCLNKCDIALKRDLMGNILLCGGSTML 372
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,037,985
Number of extensions: 840018
Number of successful extensions: 2354
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 2323
Number of HSP's successfully gapped: 24
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003212
(1056 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353540.1| PREDICTED: actin-related protein 10-like [Su... 617 e-177
Alignment gi|XP_003357976.1| PREDICTED: actin, cytoplasmic 2 [Sus scrofa]. 99 4e-21
Alignment gi|NP_001163988.1| actin, alpha cardiac muscle 1 [Sus scrofa]. 99 5e-21
Alignment gi|NP_001161267.1| actin, alpha skeletal muscle [Sus scrofa]. 98 7e-21
Alignment gi|XP_003353462.1| PREDICTED: actin, alpha cardiac muscle 1-lik... 98 7e-21
Alignment gi|XP_003124328.1| PREDICTED: actin, cytoplasmic 1 [Sus scrofa]. 98 9e-21
Alignment gi|NP_001158122.1| actin, aortic smooth muscle [Sus scrofa]. 97 1e-20
Alignment gi|XP_003121682.1| PREDICTED: actin, alpha cardiac muscle 1-lik... 97 1e-20
Alignment gi|XP_001924348.1| PREDICTED: actin-like protein 7A-like [Sus s... 84 1e-16
Alignment gi|XP_003358492.1| PREDICTED: hypothetical protein LOC100626209... 84 2e-16
>ref|XP_003353540.1| PREDICTED: actin-related protein 10-like [Sus scrofa].
Length = 417
Score = 617 bits (1591), Expect = e-177
Identities = 310/312 (99%), Positives = 310/312 (99%)
Frame = +3
Query: 120 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN 299
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN
Sbjct: 1 MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNIN 60
Query: 300 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 479
TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL
Sbjct: 61 TEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLL 120
Query: 480 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 659
APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL
Sbjct: 121 APSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLL 180
Query: 660 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP 839
EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP
Sbjct: 181 EQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDGNTERP 240
Query: 840 SPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QDNEEKSVATLILDSLMQCPIDTRKALA 1019
SPPPNVDYPLDGEKILHVLGSIRDSVVEILF QDNEEKSVATLILDSLMQCPIDTRK LA
Sbjct: 241 SPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQCPIDTRKQLA 300
Query: 1020 ENLVIIGGTSML 1055
ENLVIIGGTSML
Sbjct: 301 ENLVIIGGTSML 312
>ref|XP_003357976.1| PREDICTED: actin, cytoplasmic 2 [Sus scrofa].
Length = 375
Score = 99.0 bits (245), Expect = 4e-21
Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E A+VID G K GFAG+ PR + PS++ + A +
Sbjct: 4 EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++
Sbjct: 64 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 123
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F P++ +A +++L G + +V+D G + +PIYEG + + L L G+
Sbjct: 124 FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR 183
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L L L E+ T A+ + ++ DIK + C+V+ D + + A
Sbjct: 184 DLTDYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAA 231
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 232 SSSSLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTF 279
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C +D RK L N V+ GGT+M
Sbjct: 280 NSIMKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_001163988.1| actin, alpha cardiac muscle 1 [Sus scrofa].
Length = 377
Score = 98.6 bits (244), Expect = 5e-21
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|NP_001161267.1| actin, alpha skeletal muscle [Sus scrofa].
Length = 377
Score = 98.2 bits (243), Expect = 7e-21
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVMSGGTTM 307
>ref|XP_003353462.1| PREDICTED: actin, alpha cardiac muscle 1-like isoform 2 [Sus scrofa].
Length = 334
Score = 98.2 bits (243), Expect = 7e-21
Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 4/304 (1%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIKVVQYNINTEELYSYLKEF 332
E TA+V D G K GFAG+ PR + PS++ G P+ +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIV---GRPR------------------HQI 44
Query: 333 IHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTL 512
H ++ L V P + ++ E+ L P RE +T+++F+ F VP++ +A +++L
Sbjct: 45 WHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS 104
Query: 513 GINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAK 692
G + +VLD G + +PIYEG + + L L G+ L T L + + G
Sbjct: 105 GRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL-----TDYLMKILTERGY-- 157
Query: 693 EQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKFNIDGNTERPSPPPNVDYPL 869
S + + ++ DIK + C V+ D + A+ +++ + E P
Sbjct: 158 -----SFVTTAEREIVRDIKEKLCHVALDFENEMATAASSSSLEKSYELP---------- 202
Query: 870 DGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLILDSLMQCPIDTRKALAENLVIIG 1040
DG+ I +G+ R E LF E + +S+M+C ID RK L N V+ G
Sbjct: 203 DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 260
Query: 1041 GTSM 1052
GT+M
Sbjct: 261 GTTM 264
>ref|XP_003124328.1| PREDICTED: actin, cytoplasmic 1 [Sus scrofa].
Length = 375
Score = 97.8 bits (242), Expect = 9e-21
Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 26/323 (8%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIKV 281
A+V+D G K GFAG+ PR + PS++ + A + I
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 282 VQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
++Y I + ++ +++ H ++ L V P + V++ E+ L P RE +T+++F+
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F P++ +A +++L G + +V+D G + +PIYEG + + L L G+ L
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKF 812
L L E+ T A+ + ++ DIK + C+V+ D + + A+
Sbjct: 187 DYLMKILTERGYSFTTTAERE------------IVRDIKEKLCYVALDFEQEMATAASSS 234
Query: 813 NIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLILDSL 983
+++ + E P DG+ I +G+ R E LF E + +S+
Sbjct: 235 SLEKSYELP----------DGQVI--TIGNERFRCPEALFQPSFLGMESCGIHETTFNSI 282
Query: 984 MQCPIDTRKALAENLVIIGGTSM 1052
M+C +D RK L N V+ GGT+M
Sbjct: 283 MKCDVDIRKDLYANTVLSGGTTM 305
>ref|NP_001158122.1| actin, aortic smooth muscle [Sus scrofa].
Length = 377
Score = 97.1 bits (240), Expect = 1e-20
Identities = 84/326 (25%), Positives = 148/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
+ TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 DSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C+V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|XP_003121682.1| PREDICTED: actin, alpha cardiac muscle 1-like isoform 1 [Sus scrofa].
Length = 377
Score = 97.1 bits (240), Expect = 1e-20
Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 26/326 (7%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKP 272
E TA+V D G K GFAG+ PR + PS++ + A +
Sbjct: 6 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65
Query: 273 IKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVL 446
I ++Y I + ++ +++ H ++ L V P + ++ E+ L P RE +T+++
Sbjct: 66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 125
Query: 447 FKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGK 626
F+ F VP++ +A +++L G + +VLD G + +PIYEG + + L L G+
Sbjct: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGR 185
Query: 627 ALHKELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQA 803
L T L + + G S + + ++ DIK + C V+ D + A
Sbjct: 186 DL-----TDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCHVALDFENEMATAA 233
Query: 804 AKFNIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QD---NEEKSVATLIL 974
+ +++ + E P DG+ I +G+ R E LF E +
Sbjct: 234 SSSSLEKSYELP----------DGQVI--TIGNERFRCPETLFQPSFIGMESAGIHETTY 281
Query: 975 DSLMQCPIDTRKALAENLVIIGGTSM 1052
+S+M+C ID RK L N V+ GGT+M
Sbjct: 282 NSIMKCDIDIRKDLYANNVLSGGTTM 307
>ref|XP_001924348.1| PREDICTED: actin-like protein 7A-like [Sus scrofa].
Length = 439
Score = 84.0 bits (206), Expect = 1e-16
Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 23/321 (7%)
Frame = +3
Query: 162 AVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMP--------KPIKVVQYNINTEELYS 317
AVV+DLG + KCGFAG P I S + K M K V IN E
Sbjct: 75 AVVVDLGTGYCKCGFAGLPKPTHRISSTVGKPYMETAKTGDNRKETFVGHELINPEVRLK 134
Query: 318 YLKEFIH--------------ILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKY 455
+ H L+ + + + P + V+V + L P RE +LF+
Sbjct: 135 LMNPLRHGIIVDWDTVQDIWEYLFHQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFET 194
Query: 456 FEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALH 635
F+ P++ +A +++ + G S +V++ G+ S V+PIYEG P+ + G L G
Sbjct: 195 FKTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAG---- 250
Query: 636 KELETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVS-DLTRGLKIQAAKF 812
+L T L+ E L +V EDIK + CFV+ D I+ K
Sbjct: 251 SDLTTYLMSLMNSSGKHFTEDQLCTV---------EDIKKKCCFVALD-----PIEEKKV 296
Query: 813 NIDGNTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QDNEEKSVATLILDSLMQC 992
+ +T + + P L E+ L + S+++ + + + T + L +C
Sbjct: 297 PANEHTIQYTLPDGQQIYLCQERFLCSEMFFKPSLIKSM------QLGLHTQTVSCLNKC 350
Query: 993 PIDTRKALAENLVIIGGTSML 1055
+ ++ L N+++ GG++ML
Sbjct: 351 DVALKRDLMGNILLCGGSTML 371
>ref|XP_003358492.1| PREDICTED: hypothetical protein LOC100626209 [Sus scrofa].
Length = 844
Score = 83.6 bits (205), Expect = 2e-16
Identities = 89/321 (27%), Positives = 140/321 (43%), Gaps = 20/321 (6%)
Frame = +3
Query: 153 EKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMP---KPIKVVQYNINTEELYSYL 323
+ AVVID G FTKCG AGE ++PS ++ P +P V N E YS L
Sbjct: 494 DMAAVVIDTGTGFTKCGLAGEDHVLSVVPSRVQLLQHPVQGQPRYAVPEN--REGSYSVL 551
Query: 324 KEFI------------HILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVP 467
+ H+ Y R L V P + V+V +S + P RE + +LF+ F VP
Sbjct: 552 NRGVVSDWDALEVLWQHLFYCR-LGVQPEELAVLVADSPISPRTNREKVAEILFERFHVP 610
Query: 468 SVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEG-IPVLNCWGALPLGGKALHKEL 644
++ L+AL G + +VL G+ S V PI G + L+ + L + G L
Sbjct: 611 AMQTVHQALLALYAYGRTTGLVLGSGHGTSYVAPIITGDLAPLDTY-RLDVAGADL---- 665
Query: 645 ETQLLEQCTVDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLTRGLKIQAAKFNIDG 824
T+ L Q + +G + + G++ IK C+V+ ++
Sbjct: 666 -TEYLAQLLLASGHS----------PLKAGLVNQIKEACCYVA------------MDMTA 702
Query: 825 NTERPSPPPNVDYPLDGEKILHVLGSIRDSVVEILF*QDN----EEKSVATLILDSLMQC 992
R VD+ L ++++ LGS R E LF Q N + + L L S+ +
Sbjct: 703 EMARAQAQARVDFVLPDKQVI-TLGSERFCCPEALF-QPNLLGLNQPGLPQLALLSMSRL 760
Query: 993 PIDTRKALAENLVIIGGTSML 1055
R+ L N+V+ GG+++L
Sbjct: 761 EAKQREQLLANVVLDGGSTLL 781
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,269,880
Number of extensions: 622658
Number of successful extensions: 1864
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 1835
Number of HSP's successfully gapped: 24
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003212
(1056 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 232 3e-58
Sscrofa_Chr02 137 1e-29
>Sscrofa_Chr01
|| Length = 315321322
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 347 tttcaggcatctattggtgaatcccagagaccgaagagttgtggttattgagtctgtatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208217443 tttcaggcatctattggtgaatcccagagaccgaagagttgtggttattgagtctgtatt 208217502
Query: 407 atgcccttcccacttcagagagacgcttactcgtgttcttttcaagtattttgaggt 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208217503 atgcccttcccacttcagagagacgcttactcgtgttcttttcaagtattttgaggt 208217559
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 84 agtccgcgtcctctttgcaccagcttgtttacaaccatgccgctctacgagggcctgggg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208211374 agtccgcgtcctctttgcaccagcttgtttacaaccatgccgctctacgagggcctgggg 208211433
Query: 144 agcggcggggagaaaacggcggtcgtgatagacctgggagaggcttttaccaagtg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208211434 agcggcggggagaaaacggcggtcgtgatagacctgggagaggcttttaccaagtg 208211489
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 460 aggttccatctgttttgcttgctccaagtcatctaatggctcttcttacacttgggataa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208219317 aggttccatctgttttgcttgctccaagtcatctaatggctcttcttacacttgggataa 208219376
Query: 520 attctgccatggtcctggattgtggatatagggaaagcctggtgttacct 569
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208219377 attctgccatggtcctggattgtggatatagggaaagcctggtgttacct 208219426
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 268 agcctatcaaagttgtacaatataatatcaatacagaagaattatattcctacctaaagg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208216820 agcctatcaaagttgtacaatataatatcaatacagaagaattatattcctacctaaagg 208216879
Query: 328 aattcatccacatactatatttcagg 353
||||||||||||||||||||||||||
Sbjct: 208216880 aattcatccacatactatatttcagg 208216905
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 751 aagtgcgtacttgctttgttagtgatctgacgcgtggactaaaaatccaagcagcaaaat 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208231632 aagtgcgtacttgctttgttagtgatctgacgcgtggactaaaaatccaagcagcaaaat 208231691
Query: 811 ttaatattgatgggaatactgag 833
|||||||||||||||||||||||
Sbjct: 208231692 ttaatattgatgggaatactgag 208231714
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 638 ggagttggaaactcaactattggaacaatgtactgttgacacaggtgctgctaaagaaca 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208222667 ggagttggaaactcaactattggaacaatgtactgttgacacaggtgctgctaaagaaca 208222726
Query: 698 gagccttccgtctgtgatgggt 719
||||||||||||||||||||||
Sbjct: 208222727 gagccttccgtctgtgatgggt 208222748
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 832 agcgtccctcaccacccccaaatgttgactacccgttagatggagaaaagattttacatg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208231791 agcgtccctcaccacccccaaatgttgactacccgttagatggagaaaagattttacatg 208231850
Query: 892 tccttggatcaatcag 907
||||||||||||||||
Sbjct: 208231851 tccttggatcaatcag 208231866
Score = 151 bits (76), Expect = 9e-34
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 906 agagattcggttgtggaaattcttttttgacaagataatgaagagaaatcagtggccact 965
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 208234984 agagattcggttgtggaaattctttttgaacaagataatgaagagaaatcagtggccact 208235043
Query: 966 ttaatattggattcccttatgcag 989
||||||||||||||||||||||||
Sbjct: 208235044 ttaatattggattcccttatgcag 208235067
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 570 atatatgaaggaatcccagtactaaattgttggggagcactccccctaggaggaaaggct 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208222019 atatatgaaggaatcccagtactaaattgttggggagcactccccctaggaggaaaggct 208222078
Query: 630 cttcacaag 638
|||||||||
Sbjct: 208222079 cttcacaag 208222087
Score = 115 bits (58), Expect = 5e-23
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 987 cagtgcccaatagataccaggaaagcactagcagagaatttggtcatcataggtggcaca 1046
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 208236003 cagtgcccaatagataccaggaagcaactagcagagaatttggtcatcataggtggcaca 208236062
Query: 1047 tctatgttgc 1056
||||||||||
Sbjct: 208236063 tctatgttgc 208236072
Score = 103 bits (52), Expect = 2e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 197 gtgtggatttgctggagaaactggtccaagatgtataattcctagtgtaatnnnnnnngc 256
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 208214721 gtgtggatttgctggagaaactggtccaagatgtataattcctagtgtaataaaaaaagc 208214780
Query: 257 cggcatgcctaag 269
|||||||||||||
Sbjct: 208214781 cggcatgcctaag 208214793
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 717 ggttcaattccagaaggtgtcttagaggacattaaag 753
|||||||||||||||||||||||||||||||||||||
Sbjct: 208227388 ggttcaattccagaaggtgtcttagaggacattaaag 208227424
>Sscrofa_Chr02
|| Length = 162569375
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 570 atatatgaaggaatcccagtactaaattgttggggagcactccccctaggaggaaaggct 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39769282 atatatgaaggaatcccagtactaaattgttggggagcactccccctaggaggaaaggct 39769223
Query: 630 cttcacaag 638
|||||||||
Sbjct: 39769222 cttcacaag 39769214
Score = 121 bits (61), Expect = 8e-25
Identities = 75/77 (97%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 643 tggaaactcaactattggaacaatgtactgttgacacaggtgctgctaaagaacagagcc 702
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 39768628 tggaaactcaactattggaacaatgtactgttgacacaggtgctgctaaag-acagagcc 39768570
Query: 703 ttccgtctgtgatgggt 719
||||||||||||||||
Sbjct: 39768569 -tccgtctgtgatgggt 39768554
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,823,301
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 14
Length of query: 1056
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1035
Effective length of database: 2,808,413,156
Effective search space: 2906707616460
Effective search space used: 2906707616460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)