Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003221
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076919.1| leucine-rich repeat and calponin homology do... 627 e-180
Alignment gi|XP_002684845.1| PREDICTED: leucine-rich repeats and calponin... 338 7e-93
Alignment gi|XP_001254205.2| PREDICTED: leucine-rich repeats and calponin... 338 7e-93
Alignment gi|XP_002699984.1| PREDICTED: leucine-rich repeats and calponin... 276 2e-74
Alignment gi|XP_618181.3| PREDICTED: leucine-rich repeats and calponin ho... 276 2e-74
Alignment gi|XP_581598.5| PREDICTED: leucine-rich repeats and calponin ho... 275 5e-74
Alignment gi|XP_002691876.1| PREDICTED: leucine-rich repeats and calponin... 264 1e-70
Alignment gi|NP_001178416.1| leucine-rich repeat and death domain-contain... 92 6e-19
Alignment gi|XP_002699454.1| PREDICTED: leucine-rich repeats and death do... 92 6e-19
Alignment gi|XP_002684988.1| PREDICTED: leucine-rich repeats and IQ motif... 90 3e-18
>ref|NP_001076919.1| leucine-rich repeat and calponin homology domain-containing protein 4
[Bos taurus].
Length = 658
Score = 627 bits (1617), Expect = e-180
Identities = 316/344 (91%), Positives = 317/344 (92%)
Frame = +3
Query: 96 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 275
VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP
Sbjct: 22 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 81
Query: 276 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 455
EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL
Sbjct: 82 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 141
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
IVSNNKLGALPPDISALG LRQLDVSSN RDLNVRRNQLSTLPDEL
Sbjct: 142 IVSNNKLGALPPDISALGCLRQLDVSSNELQSLPTELCSLPTLRDLNVRRNQLSTLPDEL 201
Query: 636 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 815
GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQ+CLKGKLHIFKYLSTE
Sbjct: 202 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQICLKGKLHIFKYLSTE 261
Query: 816 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE
Sbjct: 262 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 321
Query: 996 FSELSFRISELAXXXXXXXXXXXDGSADGDPEQIDFIDSHVPGE 1127
FSELSFRISELA DGSADGDPEQIDFIDSHVPGE
Sbjct: 322 FSELSFRISELAREPRGPRERKEDGSADGDPEQIDFIDSHVPGE 365
>ref|XP_002684845.1| PREDICTED: leucine-rich repeats and calponin homology (CH) domain
containing 3 [Bos taurus].
Length = 773
Score = 338 bits (866), Expect = 7e-93
Identities = 189/356 (53%), Positives = 240/356 (67%), Gaps = 18/356 (5%)
Frame = +3
Query: 99 PGSPGLPGS--RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRF 272
PG PG PGS RS +RALEEA TG L+LS R+L+ FPRGAA ++DL+D T+ADLSRNR
Sbjct: 38 PG-PG-PGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAA-NHDLTDTTRADLSRNRL 94
Query: 273 PEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRV 452
E+P AC VSLE L+LY NC+R + A+ NL ALT+LN+SRNQLS+LP ++C+LPL+V
Sbjct: 95 SEIPIEACHFVSLENLNLYQNCIRYVPEAILNLQALTFLNISRNQLSTLPVHLCELPLKV 154
Query: 453 LIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDE 632
LI SNNKL +LP +I L L +LDVS N RDLNVRRN L LP+E
Sbjct: 155 LIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEE 214
Query: 633 LGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLST 812
L +LPL+RLDFSCN+++ IPV + LRHLQ+I LD+NPLQSPPAQ+C+KGK+HIFKYL+
Sbjct: 215 LAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKIHIFKYLNM 274
Query: 813 EAGRRGGSALGDLAPS------RPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWS 974
+A + +AP RP F C E+L+ GR Y G LDSGF+SVDSG KRWS
Sbjct: 275 QACK--------IAPDLPDYDRRPMGFGSC-HEELYSGRPY-GALDSGFNSVDSGDKRWS 324
Query: 975 GNESTDEFSELSFRISELA----------XXXXXXXXXXXDGSADGDPEQIDFIDS 1112
GNE TDEFS+L R++E+ +G + + +QID+IDS
Sbjct: 325 GNEPTDEFSDLPLRVAEITKEQRLRRENQYQENHSSLVVTNGGVEHELDQIDYIDS 380
>ref|XP_001254205.2| PREDICTED: leucine-rich repeats and calponin homology (CH) domain
containing 3 [Bos taurus].
Length = 737
Score = 338 bits (866), Expect = 7e-93
Identities = 189/356 (53%), Positives = 240/356 (67%), Gaps = 18/356 (5%)
Frame = +3
Query: 99 PGSPGLPGS--RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRF 272
PG PG PGS RS +RALEEA TG L+LS R+L+ FPRGAA ++DL+D T+ADLSRNR
Sbjct: 38 PG-PG-PGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAA-NHDLTDTTRADLSRNRL 94
Query: 273 PEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRV 452
E+P AC VSLE L+LY NC+R + A+ NL ALT+LN+SRNQLS+LP ++C+LPL+V
Sbjct: 95 SEIPIEACHFVSLENLNLYQNCIRYVPEAILNLQALTFLNISRNQLSTLPVHLCELPLKV 154
Query: 453 LIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDE 632
LI SNNKL +LP +I L L +LDVS N RDLNVRRN L LP+E
Sbjct: 155 LIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEE 214
Query: 633 LGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLST 812
L +LPL+RLDFSCN+++ IPV + LRHLQ+I LD+NPLQSPPAQ+C+KGK+HIFKYL+
Sbjct: 215 LAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKIHIFKYLNM 274
Query: 813 EAGRRGGSALGDLAPS------RPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWS 974
+A + +AP RP F C E+L+ GR Y G LDSGF+SVDSG KRWS
Sbjct: 275 QACK--------IAPDLPDYDRRPMGFGSC-HEELYSGRPY-GALDSGFNSVDSGDKRWS 324
Query: 975 GNESTDEFSELSFRISELA----------XXXXXXXXXXXDGSADGDPEQIDFIDS 1112
GNE TDEFS+L R++E+ +G + + +QID+IDS
Sbjct: 325 GNEPTDEFSDLPLRVAEITKEQRLRRENQYQENHSSLVVTNGGVEHELDQIDYIDS 380
>ref|XP_002699984.1| PREDICTED: leucine-rich repeats and calponin homology (CH) domain
containing 2 [Bos taurus].
Length = 453
Score = 276 bits (706), Expect = 2e-74
Identities = 162/342 (47%), Positives = 211/342 (61%), Gaps = 12/342 (3%)
Frame = +3
Query: 126 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLV 305
RS +RALEEA +G L+LS R+L+ FP YDL+D TQADLSRNRF E+P
Sbjct: 79 RSLDRALEEAGNSGILSLSGRKLRDFP---GSGYDLTDTTQADLSRNRFTEIPSEVWLFA 135
Query: 306 SLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGAL 485
LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+ LPL+VL++SNNKL ++
Sbjct: 136 PLETLNLYHNCIKIIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVLSNNKLVSI 195
Query: 486 PPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVRLDF 665
P +I L L +LD+S N R+LN+RRN L LPDELGDLPLV+LDF
Sbjct: 196 PEEIGKLKDLMELDISCNEIQVLPQQMGKLQSLRELNIRRNNLQALPDELGDLPLVKLDF 255
Query: 666 SCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGS--- 836
SCN+V+ IPV + +L HLQVI+LD+NPLQ PPAQ+CLKGK+HIFKYL+ +A R
Sbjct: 256 SCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPD 315
Query: 837 -----ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNE-STDEF 998
+L PS+P + S ED +P + + G DSG S D+G KR S E S D+
Sbjct: 316 SLDLPSLSKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS-DNGEKRLSTTEPSDDDT 369
Query: 999 SELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFIDSH 1115
L ++SE GS + D E DF D++
Sbjct: 370 ISLHSQVSESNREQTSRNDSHSTGSKPDSQKDQEVYDFTDAN 411
>ref|XP_618181.3| PREDICTED: leucine-rich repeats and calponin homology (CH) domain
containing 2 [Bos taurus].
Length = 766
Score = 276 bits (706), Expect = 2e-74
Identities = 162/342 (47%), Positives = 211/342 (61%), Gaps = 12/342 (3%)
Frame = +3
Query: 126 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLV 305
RS +RALEEA +G L+LS R+L+ FP YDL+D TQADLSRNRF E+P
Sbjct: 79 RSLDRALEEAGNSGILSLSGRKLRDFP---GSGYDLTDTTQADLSRNRFTEIPSEVWLFA 135
Query: 306 SLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGAL 485
LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+ LPL+VL++SNNKL ++
Sbjct: 136 PLETLNLYHNCIKIIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVLSNNKLVSI 195
Query: 486 PPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVRLDF 665
P +I L L +LD+S N R+LN+RRN L LPDELGDLPLV+LDF
Sbjct: 196 PEEIGKLKDLMELDISCNEIQVLPQQMGKLQSLRELNIRRNNLQALPDELGDLPLVKLDF 255
Query: 666 SCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGS--- 836
SCN+V+ IPV + +L HLQVI+LD+NPLQ PPAQ+CLKGK+HIFKYL+ +A R
Sbjct: 256 SCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPD 315
Query: 837 -----ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNE-STDEF 998
+L PS+P + S ED +P + + G DSG S D+G KR S E S D+
Sbjct: 316 SLDLPSLSKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS-DNGEKRLSTTEPSDDDT 369
Query: 999 SELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFIDSH 1115
L ++SE GS + D E DF D++
Sbjct: 370 ISLHSQVSESNREQTSRNDSHSTGSKPDSQKDQEVYDFTDAN 411
>ref|XP_581598.5| PREDICTED: leucine-rich repeats and calponin homology (CH) domain
containing 1 [Bos taurus].
Length = 773
Score = 275 bits (703), Expect = 5e-74
Identities = 157/298 (52%), Positives = 193/298 (64%)
Frame = +3
Query: 102 GSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEV 281
G LP +R ERALEEA +G LNLS R+LK FPR AA ++DLSD QADLS+NR EV
Sbjct: 63 GGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPAHDLSDTVQADLSKNRLVEV 122
Query: 282 PEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIV 461
P C VSLE L+LYHNC+R + A+ NL LTYLNLSRNQLS+LP +C LPL+VLI
Sbjct: 123 PMELCHFVSLEILNLYHNCIRVIPEAIINLQMLTYLNLSRNQLSALPACLCGLPLKVLIA 182
Query: 462 SNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGD 641
SNNKLG+LP +I L L +LDVS N R+LNVRRN L LP EL D
Sbjct: 183 SNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVD 242
Query: 642 LPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAG 821
LPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK+HIFKYLS +A
Sbjct: 243 LPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQAC 302
Query: 822 RRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
+ + L P + + G++ DSG S D+G KR S E +DE
Sbjct: 303 QIKTTDSLYLHTMERPHLH----QQVEDGKK---DSDSGVGS-DNGDKRLSATEPSDE 352
>ref|XP_002691876.1| PREDICTED: leucine-rich repeats and calponin homology (CH) domain
containing 1 [Bos taurus].
Length = 827
Score = 264 bits (674), Expect = 1e-70
Identities = 156/310 (50%), Positives = 191/310 (61%), Gaps = 15/310 (4%)
Frame = +3
Query: 111 GLPGSRSAERALEE---------------AVATGTLNLSNRRLKHFPRGAARSYDLSDIT 245
G G RS ERA EE A +G LNLS R+LK FPR AA ++DLSD
Sbjct: 105 GSAGRRSRERAAEEGESRREEGAGAGGDTAANSGGLNLSARKLKEFPRTAAPAHDLSDTV 164
Query: 246 QADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPP 425
QADLS+NR EVP C VSLE L+LYHNC+R + A+ NL LTYLNLSRNQLS+LP
Sbjct: 165 QADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIINLQMLTYLNLSRNQLSALPA 224
Query: 426 YICQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRR 605
+C LPL+VLI SNNKLG+LP +I L L +LDVS N R+LNVRR
Sbjct: 225 CLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRR 284
Query: 606 NQLSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGK 785
N L LP EL DLPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK
Sbjct: 285 NYLKVLPQELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGK 344
Query: 786 LHIFKYLSTEAGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSK 965
+HIFKYLS +A + + L P + + G++ DSG S D+G K
Sbjct: 345 VHIFKYLSIQACQIKTTDSLYLHTMERPHLH----QQVEDGKK---DSDSGVGS-DNGDK 396
Query: 966 RWSGNESTDE 995
R S E +DE
Sbjct: 397 RLSATEPSDE 406
>ref|NP_001178416.1| leucine-rich repeat and death domain-containing protein [Bos
taurus].
Length = 913
Score = 92.4 bits (228), Expect = 6e-19
Identities = 65/179 (36%), Positives = 92/179 (51%), Gaps = 2/179 (1%)
Frame = +3
Query: 231 LSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQL 410
L+ + DLS N +P Q+ L+ L L NCL L ALG L ALT+L ++ N+L
Sbjct: 127 LARLAHLDLSFNSLETLPACVPQMCGLDALLLSRNCLSELPAALGALPALTFLAVTHNRL 186
Query: 411 SSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXR 587
+LPP + L L+ L +S N L ALPP+I LGSL +L+++SN R
Sbjct: 187 RTLPPALGALSSLQRLDLSGNLLEALPPEIGGLGSLAELNLASNRLQSLPSSLAGLRALR 246
Query: 588 DLNVRRNQLSTLPDELGDLPLV-RLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPP 761
+ N L+++P L LPL+ RLD N++ +P L + L NPL PP
Sbjct: 247 LFILHSNLLASVPASLARLPLLTRLDLRDNQLRDVPP---ELLDAPFVRLQGNPLGRPP 302
Score = 55.5 bits (132), Expect = 9e-08
Identities = 76/262 (29%), Positives = 100/262 (38%), Gaps = 32/262 (12%)
Frame = +3
Query: 108 PGLPGSRSAERALEEAVATGT----LNLSNRRLKHFPRGAARSY---------DLSDITQ 248
P A R EA G L NR H G R L ++
Sbjct: 10 PATLAQEDAARDASEAAGAGPEAPLLPAGNRLSLHLHPGGCRRLLRLCAQQAPQLLEVDF 69
Query: 249 ADLSRNRFPEVPEAAC-----QLVSLEGLSLYHN--------CLR----CLNPALGNLTA 377
LS + P++ EAA L L L L CLR L +L +L
Sbjct: 70 LQLSGHEDPQLLEAALARLPWSLPRLRSLVLKGGQRREALGACLRGSLATLPASLSSLAR 129
Query: 378 LTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXX 554
L +L+LS N L +LP + Q+ L L++S N L LP + AL +L L V+
Sbjct: 130 LAHLDLSFNSLETLPACVPQMCGLDALLLSRNCLSELPAALGALPALTFLAVT------- 182
Query: 555 XXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFCRLRHLQVIL 731
N+L TLP LG L L RLD S N + +P L L +
Sbjct: 183 ----------------HNRLRTLPPALGALSSLQRLDLSGNLLEALPPEIGGLGSLAELN 226
Query: 732 LDSNPLQSPPAQVCLKGKLHIF 797
L SN LQS P+ + L +F
Sbjct: 227 LASNRLQSLPSSLAGLRALRLF 248
>ref|XP_002699454.1| PREDICTED: leucine-rich repeats and death domain containing [Bos
taurus].
Length = 913
Score = 92.4 bits (228), Expect = 6e-19
Identities = 65/179 (36%), Positives = 92/179 (51%), Gaps = 2/179 (1%)
Frame = +3
Query: 231 LSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQL 410
L+ + DLS N +P Q+ L+ L L NCL L ALG L ALT+L ++ N+L
Sbjct: 127 LARLAHLDLSFNSLETLPACVPQMCGLDALLLSRNCLSELPAALGALPALTFLAVTHNRL 186
Query: 411 SSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXR 587
+LPP + L L+ L +S N L ALPP+I LGSL +L+++SN R
Sbjct: 187 RTLPPALGALSSLQRLDLSGNLLEALPPEIGGLGSLAELNLASNRLQSLPSSLAGLRALR 246
Query: 588 DLNVRRNQLSTLPDELGDLPLV-RLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPP 761
+ N L+++P L LPL+ RLD N++ +P L + L NPL PP
Sbjct: 247 LFILHSNLLASVPASLARLPLLTRLDLRDNQLRDVPP---ELLDAPFVRLQGNPLGRPP 302
Score = 55.5 bits (132), Expect = 9e-08
Identities = 76/262 (29%), Positives = 100/262 (38%), Gaps = 32/262 (12%)
Frame = +3
Query: 108 PGLPGSRSAERALEEAVATGT----LNLSNRRLKHFPRGAARSY---------DLSDITQ 248
P A R EA G L NR H G R L ++
Sbjct: 10 PATLAQEDAARDASEAAGAGPEAPLLPAGNRLSLHLHPGGCRRLLRLCAQQAPQLLEVDF 69
Query: 249 ADLSRNRFPEVPEAAC-----QLVSLEGLSLYHN--------CLR----CLNPALGNLTA 377
LS + P++ EAA L L L L CLR L +L +L
Sbjct: 70 LQLSGHEDPQLLEAALARLPWSLPRLRSLVLKGGQRREALGACLRGSLATLPASLSSLAR 129
Query: 378 LTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXX 554
L +L+LS N L +LP + Q+ L L++S N L LP + AL +L L V+
Sbjct: 130 LAHLDLSFNSLETLPACVPQMCGLDALLLSRNCLSELPAALGALPALTFLAVT------- 182
Query: 555 XXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFCRLRHLQVIL 731
N+L TLP LG L L RLD S N + +P L L +
Sbjct: 183 ----------------HNRLRTLPPALGALSSLQRLDLSGNLLEALPPEIGGLGSLAELN 226
Query: 732 LDSNPLQSPPAQVCLKGKLHIF 797
L SN LQS P+ + L +F
Sbjct: 227 LASNRLQSLPSSLAGLRALRLF 248
>ref|XP_002684988.1| PREDICTED: leucine-rich repeats and IQ motif containing 4 [Bos
taurus].
Length = 506
Score = 90.1 bits (222), Expect = 3e-18
Identities = 75/287 (26%), Positives = 119/287 (41%), Gaps = 55/287 (19%)
Frame = +3
Query: 111 GLPGS--RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDL--SDITQADLSRNRFPE 278
GL G+ +S + + ++L + + FP Y+L S +T+ LS N +
Sbjct: 148 GLAGNHLKSLPKEIVNQTKLREIHLKHNQFAAFPLELCDLYNLXLSQMTEVGLSGNHLEK 207
Query: 279 VPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVL 455
+P C+ SL L L++ LR L + L L +L+LS+N L P IC L L VL
Sbjct: 208 IPRLLCRWTSLFLLYLHNTGLRVLRRSFRRLVNLQFLDLSQNFLEHCPLQICSLKNLEVL 267
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXX----------------- 584
+ +NK+ LP D +L L+ L ++ N
Sbjct: 268 ALDDNKICQLPSDFGSLSKLKILGLTGNQFSSFPKEILSLASLEKLYIGQDEGAKLTHLP 327
Query: 585 ---------RDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFCR--------- 707
++L + N L LP LG +P L LD CN + ++P + C+
Sbjct: 328 ECIKRLQNLKELYIENNHLEYLPVSLGSMPNLEILDCHCNLIKQLPDAICQAQALKELRF 387
Query: 708 --------------LRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYL 806
L +L+V+ L NP++ PP VC KG +++YL
Sbjct: 388 EDNLITYLPENLDSLVNLEVLTLTGNPMEEPPMSVCAKGTEAVWEYL 434
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,775,209
Number of extensions: 1422956
Number of successful extensions: 10978
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 10472
Number of HSP's successfully gapped: 116
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003221
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546954.2| PREDICTED: similar to leucine-rich repeats and ... 581 e-166
Alignment gi|XP_851476.1| PREDICTED: similar to leucine-rich repeats and ... 276 3e-74
Alignment gi|XP_549199.2| PREDICTED: similar to leucine-rich repeats and ... 276 3e-74
Alignment gi|XP_534123.2| PREDICTED: similar to leucine-rich repeats and ... 221 1e-57
Alignment gi|XP_545276.2| PREDICTED: similar to Leucine-rich repeat prote... 94 3e-19
Alignment gi|XP_532819.2| PREDICTED: similar to malignant fibrous histioc... 89 6e-18
Alignment gi|XP_536176.1| PREDICTED: similar to leucine rich repeat conta... 86 8e-17
Alignment gi|XP_849199.1| PREDICTED: similar to leucine rich repeat conta... 86 8e-17
Alignment gi|XP_535443.2| PREDICTED: similar to CG3040-PA [Canis familiar... 85 1e-16
Alignment gi|XP_535177.1| PREDICTED: similar to Ras suppressor protein 1 ... 85 1e-16
>ref|XP_546954.2| PREDICTED: similar to leucine-rich repeats and calponin homology (CH)
domain containing 4 [Canis familiaris].
Length = 669
Score = 581 bits (1498), Expect = e-166
Identities = 292/312 (93%), Positives = 295/312 (94%)
Frame = +3
Query: 96 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 275
VPG+PGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP
Sbjct: 22 VPGAPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 81
Query: 276 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 455
EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL
Sbjct: 82 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 141
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
IVSNNKLGALPPDISALGSLRQLDVS N RDL+VRRNQLSTLPDEL
Sbjct: 142 IVSNNKLGALPPDISALGSLRQLDVSGNELQALPAELCSLPSLRDLSVRRNQLSTLPDEL 201
Query: 636 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 815
GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQ+CLKGKLHIFKYLSTE
Sbjct: 202 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQICLKGKLHIFKYLSTE 261
Query: 816 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
AGRRGGSALGDLA SRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE
Sbjct: 262 AGRRGGSALGDLASSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 321
Query: 996 FSELSFRISELA 1031
FSELSFRISELA
Sbjct: 322 FSELSFRISELA 333
>ref|XP_851476.1| PREDICTED: similar to leucine-rich repeats and calponin homology (CH)
domain containing 2 isoform 2 [Canis familiaris].
Length = 742
Score = 276 bits (705), Expect = 3e-74
Identities = 163/340 (47%), Positives = 210/340 (61%), Gaps = 12/340 (3%)
Frame = +3
Query: 126 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLV 305
RS +RALEEA +G L+LS R+L+ FP YDL+D TQADLSRNRF E+P
Sbjct: 78 RSLDRALEEAGNSGILSLSGRKLRDFP---GSGYDLTDTTQADLSRNRFTEIPSDVWLFA 134
Query: 306 SLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGAL 485
LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+ LPL+VL+VSNNKL ++
Sbjct: 135 PLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSI 194
Query: 486 PPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVRLDF 665
P +I L L +LD+S N R+LN+RRN L LPDELGDLPLV+LDF
Sbjct: 195 PEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHVLPDELGDLPLVKLDF 254
Query: 666 SCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGS--- 836
SCN+V+ IPV + +L HLQV++LD+NPLQ PPAQ+CLKGK+HIFKYL+ +A R
Sbjct: 255 SCNKVTEIPVCYRKLHHLQVMILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPD 314
Query: 837 -----ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNE-STDEF 998
+L PS+P + S ED +P + + G DSG S D+G KR S E S D+
Sbjct: 315 SLDLPSLSKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS-DNGEKRLSTTEPSDDDT 368
Query: 999 SELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFID 1109
L ++SE GS + D E DFID
Sbjct: 369 ISLHSQVSESNREQTSRNDSHSIGSKPDSQKDQEVYDFID 408
>ref|XP_549199.2| PREDICTED: similar to leucine-rich repeats and calponin homology (CH)
domain containing 2 isoform 1 [Canis familiaris].
Length = 765
Score = 276 bits (705), Expect = 3e-74
Identities = 163/340 (47%), Positives = 210/340 (61%), Gaps = 12/340 (3%)
Frame = +3
Query: 126 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLV 305
RS +RALEEA +G L+LS R+L+ FP YDL+D TQADLSRNRF E+P
Sbjct: 78 RSLDRALEEAGNSGILSLSGRKLRDFP---GSGYDLTDTTQADLSRNRFTEIPSDVWLFA 134
Query: 306 SLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGAL 485
LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+ LPL+VL+VSNNKL ++
Sbjct: 135 PLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSI 194
Query: 486 PPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVRLDF 665
P +I L L +LD+S N R+LN+RRN L LPDELGDLPLV+LDF
Sbjct: 195 PEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHVLPDELGDLPLVKLDF 254
Query: 666 SCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGS--- 836
SCN+V+ IPV + +L HLQV++LD+NPLQ PPAQ+CLKGK+HIFKYL+ +A R
Sbjct: 255 SCNKVTEIPVCYRKLHHLQVMILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPD 314
Query: 837 -----ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNE-STDEF 998
+L PS+P + S ED +P + + G DSG S D+G KR S E S D+
Sbjct: 315 SLDLPSLSKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS-DNGEKRLSTTEPSDDDT 368
Query: 999 SELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFID 1109
L ++SE GS + D E DFID
Sbjct: 369 ISLHSQVSESNREQTSRNDSHSIGSKPDSQKDQEVYDFID 408
>ref|XP_534123.2| PREDICTED: similar to leucine-rich repeats and calponin homology
(CH) domain containing 1 [Canis familiaris].
Length = 767
Score = 221 bits (563), Expect = 1e-57
Identities = 126/248 (50%), Positives = 155/248 (62%)
Frame = +3
Query: 252 DLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYI 431
DLS+NR EVP C VSLE L+LYHNC+R + + NL LTYLNLSRNQLS+LP +
Sbjct: 173 DLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPETIINLQMLTYLNLSRNQLSALPACL 232
Query: 432 CQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQ 611
C LPL+VLI SNNKLG+LP +I L L +LDVS N R+LNVRRN
Sbjct: 233 CGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNY 292
Query: 612 LSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLH 791
L LP EL DLPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK+H
Sbjct: 293 LKVLPQELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVH 352
Query: 792 IFKYLSTEAGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRW 971
IFKYLS +A + + L P ED + D G+ S D+G KR
Sbjct: 353 IFKYLSIQACQIKTTDSLYLQTMERPHLQQ-HVED--SKKDSDSGVGS-----DNGDKRL 404
Query: 972 SGNESTDE 995
S E +DE
Sbjct: 405 SATEPSDE 412
>ref|XP_545276.2| PREDICTED: similar to Leucine-rich repeat protein SHOC-2 (Ras-binding
protein Sur-8) [Canis familiaris].
Length = 648
Score = 93.6 bits (231), Expect = 3e-19
Identities = 79/293 (26%), Positives = 121/293 (41%), Gaps = 51/293 (17%)
Frame = +3
Query: 102 GSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEV 281
G GLP AL L+LS RL+ PRG A+ L+ +T+ LS N +
Sbjct: 293 GLAGLP------EALGLCAGLAVLDLSRNRLRSLPRGLAQ---LAALTEVGLSGNHLERL 343
Query: 282 PEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLI 458
P C+ S+ L L LR L + L L L+LS+N L P +C L L+VL
Sbjct: 344 PRLVCRWSSVHLLYLRDTGLRALRRSFRRLVHLRLLDLSQNHLERGPAELCALRHLQVLA 403
Query: 459 VSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXX------------------ 584
+ +N++ LP D S+L L+ L ++ N
Sbjct: 404 LDDNRIRQLPSDFSSLSKLKMLGLTGNQFPSFPEEILSLESLEKLYIGQDQGMKLTYIPE 463
Query: 585 --------RDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFCRLRHLQVILLD 737
++L V N L LP LG +P L LD N + ++P S C+ + L+ +LL+
Sbjct: 464 HISKLQSLKELYVENNHLEYLPTSLGSMPNLEILDCRHNWLKKLPNSICQAQALKELLLE 523
Query: 738 SN-----------------------PLQSPPAQVCLKGKLHIFKYLSTEAGRR 827
N P++ PP +VC++G I+ YL + ++
Sbjct: 524 DNLITCLPENLDNLVNLKVLTLMDNPMEDPPKEVCIEGSQAIWTYLKIKRNKK 576
Score = 77.4 bits (189), Expect = 2e-14
Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 2/208 (0%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L L+ L+ P+ L +I L N+F P C L +LE + L N L +
Sbjct: 218 LGLTGNHLRSLPKEIVNQTQLREIY---LGHNQFAVFPPELCVLCNLEIIDLDENQLTAI 274
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYI-CQLPLRVLIVSNNKLGALPPDISALGSLRQLD 527
+GNL L ++ N L+ LP + L VL +S N+L +LP ++ L +L ++
Sbjct: 275 PEEIGNLARLQKFYVADNGLAGLPEALGLCAGLAVLDLSRNRLRSLPRGLAQLAALTEVG 334
Query: 528 VSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVR-LDFSCNRVSRIPVSFC 704
+S N L +R L L L +R LD S N + R P C
Sbjct: 335 LSGNHLERLPRLVCRWSSVHLLYLRDTGLRALRRSFRRLVHLRLLDLSQNHLERGPAELC 394
Query: 705 RLRHLQVILLDSNPLQSPPAQVCLKGKL 788
LRHLQV+ LD N ++ P+ KL
Sbjct: 395 ALRHLQVLALDDNRIRQLPSDFSSLSKL 422
Score = 70.9 bits (172), Expect = 2e-12
Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 37/241 (15%)
Frame = +3
Query: 183 NRRLKHFPRGAARSYDLSDITQ----------ADLSRNRFPEVPEAACQLVSLEGLSLYH 332
+ RL+ R A+ + +I Q L++NR ++ +L SLEGL L H
Sbjct: 115 DHRLRRIRRSASEKNQIEEIPQDIQHLKNLRILYLNKNRLGKLCPELGRLGSLEGLDLSH 174
Query: 333 NCLRCLN-PALGNLTALTYLNLSRNQLSSLPPYICQL--PLRVLIVSNNKLGALPPDISA 503
N L + P LG L L L L L +P +C+L L +L ++ N L +LP +I
Sbjct: 175 NPLLSSSLPVLGGLRRLRELRLYHTHLGEIPNVLCKLLHHLELLGLTGNHLRSLPKEIVN 234
Query: 504 LGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP------------ 647
LR++ + N +++ NQL+ +P+E+G+L
Sbjct: 235 QTQLREIYLGHNQFAVFPPELCVLCNLEIIDLDENQLTAIPEEIGNLARLQKFYVADNGL 294
Query: 648 ------------LVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLH 791
L LD S NR+ +P +L L + L N L+ P VC +H
Sbjct: 295 AGLPEALGLCAGLAVLDLSRNRLRSLPRGLAQLAALTEVGLSGNHLERLPRLVCRWSSVH 354
Query: 792 I 794
+
Sbjct: 355 L 355
>ref|XP_532819.2| PREDICTED: similar to malignant fibrous histiocytoma amplified
sequence 1 [Canis familiaris].
Length = 1074
Score = 89.4 bits (220), Expect = 6e-18
Identities = 79/257 (30%), Positives = 111/257 (43%), Gaps = 25/257 (9%)
Frame = +3
Query: 108 PGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPE 287
P LP A LEE L++S RL H P + L + D+ N+ P
Sbjct: 180 PALPAQLGALAHLEE------LDVSFNRLAHLPDSLSCLLRLRTL---DVDHNQLTAFPR 230
Query: 288 AACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVS 464
QL +LE L + N LR L + L AL L LS +L +LP C+L L L++
Sbjct: 231 QLLQLAALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPSGFCELASLESLMLD 290
Query: 465 NNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL 644
NN L ALP S L L+ L++SSN +L + RNQL+++P + L
Sbjct: 291 NNGLRALPAQFSRLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSLISGL 350
Query: 645 -PLVRLDFSCNRVSRIPVSFCRLRHLQVILLD-----------------------SNPLQ 752
L+ L NR+ +P S L L+ ++L NPL
Sbjct: 351 GRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDNFGQLSRVGLWKIKDNPLI 410
Query: 753 SPPAQVCLKGKLHIFKY 803
PP +VC+KG +I Y
Sbjct: 411 QPPYEVCMKGIPYIAAY 427
Score = 79.0 bits (193), Expect = 8e-15
Identities = 75/258 (29%), Positives = 108/258 (41%), Gaps = 13/258 (5%)
Frame = +3
Query: 138 RALEEAVATGTLNLSNRRLKHFPR--GAARSYDLSDITQADLSRNRFPEVPEAACQLVSL 311
R L + A L++S+ RL+ P A R+ + ++ A+L +P C+L SL
Sbjct: 230 RQLLQLAALEELDVSSNRLRGLPEDISALRALKILWLSGAELGT-----LPSGFCELASL 284
Query: 312 EGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGALP 488
E L L +N LR L L L LNLS N P + L L L +S N+L ++P
Sbjct: 285 ESLMLDNNGLRALPAQFSRLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVP 344
Query: 489 PDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVRL-DF 665
IS LG L L + +N +L ++ NQ++ LPD G L V L
Sbjct: 345 SLISGLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDNFGQLSRVGLWKI 404
Query: 666 SCNRVSRIPVSFCR-----LRHLQVILLDSNPLQSPPAQVCLKGK----LHIFKYLSTEA 818
N + + P C + Q L S P P ++ L G + ++ TE
Sbjct: 405 KDNPLIQPPYEVCMKGIPYIAAYQKELAHSQPAVQPRLKLLLMGHKAAGKTLLRHCLTEE 464
Query: 819 GRRGGSALGDLAPSRPPS 872
G GD S PPS
Sbjct: 465 RAEGNQGGGDKEKSSPPS 482
Score = 71.2 bits (173), Expect = 2e-12
Identities = 75/241 (31%), Positives = 103/241 (42%), Gaps = 15/241 (6%)
Frame = +3
Query: 96 VPGSPGLPGSRSAERAL-----EEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQ---- 248
+P PG G A A + G + R+ RG R DL+ I
Sbjct: 41 LPPEPGRSGDEEAPPAAPALRPQHGPPAGARGAAAARVAGRERG--RLVDLAAIAPRRRR 98
Query: 249 -ADLSRNRFPEVPEA-ACQLVSLEGLSLYHNCLRCLNPALGNL-TALTYLNLSRNQLSSL 419
A + + EVP+ L SL L L N L A+ L LT L++S N+LS+L
Sbjct: 99 GAQPGQQQGDEVPDGLGAALCSLRVLVLRRNRFARLPAAVAELGPRLTELDVSHNRLSAL 158
Query: 420 PPYICQL--PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDL 593
LR L +S+N+L ALP + AL L +LDVS N R L
Sbjct: 159 GAEAVSALRELRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLLRLRTL 218
Query: 594 NVRRNQLSTLPDELGDL-PLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQV 770
+V NQL+ P +L L L LD S NR+ +P LR L+++ L L + P+
Sbjct: 219 DVDHNQLTAFPRQLLQLAALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPSGF 278
Query: 771 C 773
C
Sbjct: 279 C 279
>ref|XP_536176.1| PREDICTED: similar to leucine rich repeat containing 28 isoform 1
[Canis familiaris].
Length = 312
Score = 85.5 bits (210), Expect = 8e-17
Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQ-LVSLEGLSLYHNCLRC 347
L L+ R L HFP + L + + + RN +PE Q L +L L L+ N +
Sbjct: 20 LFLNYRNLHHFPLELLKDEGLQYLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVV 79
Query: 348 LNPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQL 524
+ A+G+L L L+LS N L + P I +L LR L ++NN+L LPP++ L L+ L
Sbjct: 80 VPEAIGSLVKLQCLDLSDNALQIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTL 139
Query: 525 DVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSF 701
D+S+N + L V RN+L +P L LP L L + NR++ +P+
Sbjct: 140 DISTNRLLTLPERLHLCLSLQYLTVDRNRLWCVPRHLCQLPSLNELSMAGNRLAFLPLDL 199
Query: 702 CRLRHLQVILLDSN 743
R R LQ + +D+N
Sbjct: 200 GRSRELQYVYVDNN 213
Score = 61.2 bits (147), Expect = 2e-09
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Frame = +3
Query: 321 SLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQ-LPLRV-LIVSNNKLGALPPD 494
+L+H L L L L L + RN L++LP + Q LP V L + +N + +P
Sbjct: 26 NLHHFPLELLKDE--GLQYLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVVVPEA 83
Query: 495 ISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSC 671
I +L L+ LD+S N R L + NQL LP E+GDL L LD S
Sbjct: 84 IGSLVKLQCLDLSDNALQIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDIST 143
Query: 672 NRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVC 773
NR+ +P LQ + +D N L P +C
Sbjct: 144 NRLLTLPERLHLCLSLQYLTVDRNRLWCVPRHLC 177
>ref|XP_849199.1| PREDICTED: similar to leucine rich repeat containing 28 isoform 2
[Canis familiaris].
Length = 367
Score = 85.5 bits (210), Expect = 8e-17
Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQ-LVSLEGLSLYHNCLRC 347
L L+ R L HFP + L + + + RN +PE Q L +L L L+ N +
Sbjct: 20 LFLNYRNLHHFPLELLKDEGLQYLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVV 79
Query: 348 LNPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQL 524
+ A+G+L L L+LS N L + P I +L LR L ++NN+L LPP++ L L+ L
Sbjct: 80 VPEAIGSLVKLQCLDLSDNALQIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTL 139
Query: 525 DVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSF 701
D+S+N + L V RN+L +P L LP L L + NR++ +P+
Sbjct: 140 DISTNRLLTLPERLHLCLSLQYLTVDRNRLWCVPRHLCQLPSLNELSMAGNRLAFLPLDL 199
Query: 702 CRLRHLQVILLDSN 743
R R LQ + +D+N
Sbjct: 200 GRSRELQYVYVDNN 213
Score = 61.2 bits (147), Expect = 2e-09
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Frame = +3
Query: 321 SLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQ-LPLRV-LIVSNNKLGALPPD 494
+L+H L L L L L + RN L++LP + Q LP V L + +N + +P
Sbjct: 26 NLHHFPLELLKDE--GLQYLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVVVPEA 83
Query: 495 ISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSC 671
I +L L+ LD+S N R L + NQL LP E+GDL L LD S
Sbjct: 84 IGSLVKLQCLDLSDNALQIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDIST 143
Query: 672 NRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVC 773
NR+ +P LQ + +D N L P +C
Sbjct: 144 NRLLTLPERLHLCLSLQYLTVDRNRLWCVPRHLC 177
>ref|XP_535443.2| PREDICTED: similar to CG3040-PA [Canis familiaris].
Length = 264
Score = 85.1 bits (209), Expect = 1e-16
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 2/213 (0%)
Frame = +3
Query: 120 GSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAAC- 296
G+ + +E A TG L +R L FP + S++ DLS N+ +P
Sbjct: 27 GNSALRAHVETAQKTGVFQLKDRGLTEFPPELQKL--TSNLRTIDLSNNKIESLPPVIIG 84
Query: 297 QLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNK 473
+ L+ LSL +N L L L NL L L+L+ N L LP QL L+ L +S N+
Sbjct: 85 KFTLLKSLSLNNNKLTVLPEELCNLKKLEMLSLNNNHLRELPSTFGQLAALKTLSLSGNQ 144
Query: 474 LGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLV 653
L ALPP + SLR LDV +++ +NQ+ ++PD +G+L ++
Sbjct: 145 LQALPPQLC---SLRHLDV--------------------VDLSKNQIRSIPDTVGELQVI 181
Query: 654 RLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQ 752
L+ + N++S+I V L+V+ L+ N L+
Sbjct: 182 ELNLNQNQISQISVKISCCPRLKVLRLEENCLE 214
Score = 58.2 bits (139), Expect = 1e-08
Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Frame = +3
Query: 354 PALGNLTA-LTYLNLSRNQLSSLPPYICQ--LPLRVLIVSNNKLGALPPDISALGSLRQL 524
P L LT+ L ++LS N++ SLPP I L+ L ++NNKL LP ++ L L L
Sbjct: 56 PELQKLTSNLRTIDLSNNKIESLPPVIIGKFTLLKSLSLNNNKLTVLPEELCNLKKLEML 115
Query: 525 DVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVR-LDFSCNRVSRIPVSF 701
+++N L LP G L ++ L S N++ +P
Sbjct: 116 SLNNN-----------------------HLRELPSTFGQLAALKTLSLSGNQLQALPPQL 152
Query: 702 CRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFK 800
C LRHL V+ L N ++S P V G+L + +
Sbjct: 153 CSLRHLDVVDLSKNQIRSIPDTV---GELQVIE 182
>ref|XP_535177.1| PREDICTED: similar to Ras suppressor protein 1 [Canis familiaris].
Length = 277
Score = 84.7 bits (208), Expect = 1e-16
Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 7/204 (3%)
Frame = +3
Query: 225 YDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRN 404
+ LS ITQ LS N+ VP +L +LE L+ ++N + L + +L L +LNL N
Sbjct: 37 FSLSHITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMN 96
Query: 405 QLSSLPPYICQLP-LRVLIVSNNKL--GALPPDISALGSLRQLDVSSNXXXXXXXXXXXX 575
+L++LP LP L VL ++ N L +LP + L +LR L +S N
Sbjct: 97 RLNTLPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKL 156
Query: 576 XXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSCNRVSRIPVSFCRL---RHLQVILLDSN 743
+ L++R N L +LP E+G+L L L NR++ +P L QV ++N
Sbjct: 157 TKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENN 216
Query: 744 PLQSPPAQVCLKGKLHIFKYLSTE 815
P +P A G H+F+Y+ +E
Sbjct: 217 PWVTPIADQFQLGVSHVFEYIRSE 240
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,746,110
Number of extensions: 1462270
Number of successful extensions: 10674
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 10274
Number of HSP's successfully gapped: 106
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003221
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002310.2| leucine-rich repeat and calponin homology domai... 607 e-174
Alignment gi|NP_116162.1| leucine-rich repeat and calponin homology domai... 335 6e-92
Alignment gi|NP_065922.3| leucine-rich repeat and calponin homology domai... 280 2e-75
Alignment gi|NP_001230892.1| leucine-rich repeat and calponin homology do... 280 2e-75
Alignment gi|NP_001157685.1| leucine-rich repeat and calponin homology do... 275 6e-74
Alignment gi|NP_001157683.1| leucine-rich repeat and calponin homology do... 275 6e-74
Alignment gi|NP_055931.1| leucine-rich repeat and calponin homology domai... 275 6e-74
Alignment gi|NP_004216.2| malignant fibrous histiocytoma-amplified sequen... 94 3e-19
Alignment gi|NP_665894.2| p53-induced protein with a death domain isoform... 92 9e-19
Alignment gi|NP_665893.2| p53-induced protein with a death domain isoform... 92 9e-19
>ref|NP_002310.2| leucine-rich repeat and calponin homology domain-containing protein 4
[Homo sapiens].
Length = 683
Score = 607 bits (1566), Expect = e-174
Identities = 309/344 (89%), Positives = 311/344 (90%)
Frame = +3
Query: 96 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 275
VPGSPGLPG RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP
Sbjct: 22 VPGSPGLPGRRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 81
Query: 276 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 455
EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLS LPPYICQLPLRVL
Sbjct: 82 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSLLPPYICQLPLRVL 141
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
IVSNNKLGALPPDI LGSLRQLDVSSN RDLNVRRNQLSTLP+EL
Sbjct: 142 IVSNNKLGALPPDIGTLGSLRQLDVSSNELQSLPSELCGLSSLRDLNVRRNQLSTLPEEL 201
Query: 636 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 815
GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE
Sbjct: 202 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 261
Query: 816 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
AG+R GSALGDLAPSRPPSFSPCPAEDLFPG RYDGGLDSGFHSVDSGSKRWSGNESTDE
Sbjct: 262 AGQR-GSALGDLAPSRPPSFSPCPAEDLFPGHRYDGGLDSGFHSVDSGSKRWSGNESTDE 320
Query: 996 FSELSFRISELAXXXXXXXXXXXDGSADGDPEQIDFIDSHVPGE 1127
FSELSFRISELA DGSADGDP QIDFIDSHVPGE
Sbjct: 321 FSELSFRISELAREPRGPRERKEDGSADGDPVQIDFIDSHVPGE 364
>ref|NP_116162.1| leucine-rich repeat and calponin homology domain-containing protein 3
[Homo sapiens].
Length = 712
Score = 335 bits (858), Expect = 6e-92
Identities = 187/354 (52%), Positives = 235/354 (66%), Gaps = 19/354 (5%)
Frame = +3
Query: 108 PGL-PGS--RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPE 278
PG PGS RS +RALEEA TG L+LS R+L+ FPRGAA ++DL+D T+ADLSRNR E
Sbjct: 38 PGFGPGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAA-NHDLTDTTRADLSRNRLSE 96
Query: 279 VPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLI 458
+P AC VSLE L+LY NC+R + A+ NL ALT+LN+SRNQLS+LP ++C LPL+VLI
Sbjct: 97 IPIEACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLI 156
Query: 459 VSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELG 638
SNNKL +LP +I L L +LDVS N RDLNVRRN L LP+EL
Sbjct: 157 ASNNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPEELA 216
Query: 639 DLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEA 818
+LPL+RLDFSCN+++ IPV + LRHLQ I LD+NPLQSPPAQ+C+KGK+HIFKYL+ +A
Sbjct: 217 ELPLIRLDFSCNKITTIPVCYRNLRHLQTITLDNNPLQSPPAQICIKGKVHIFKYLNIQA 276
Query: 819 GRRGGSALGDLAPS------RPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGN 980
+ +AP RP F C E+L+ R Y G LDSGF+SVDSG KRWSGN
Sbjct: 277 CK--------IAPDLPDYDRRPLGFGSC-HEELYSSRPY-GALDSGFNSVDSGDKRWSGN 326
Query: 981 ESTDEFSELSFRISELA----------XXXXXXXXXXXDGSADGDPEQIDFIDS 1112
E TDEFS+L R++E+ +G + D +QID+IDS
Sbjct: 327 EPTDEFSDLPLRVAEITKEQRLRRESQYQENRGSLVVTNGGVEHDLDQIDYIDS 380
>ref|NP_065922.3| leucine-rich repeat and calponin homology domain-containing protein 2
isoform 1 [Homo sapiens].
Length = 765
Score = 280 bits (716), Expect = 2e-75
Identities = 168/355 (47%), Positives = 216/355 (60%), Gaps = 19/355 (5%)
Frame = +3
Query: 102 GSPGLPGS-------RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLS 260
G P PGS RS +RALEEA ++G L+LS R+L+ FP YDL+D TQADLS
Sbjct: 63 GPPWNPGSLQPQHTVRSLDRALEEAGSSGILSLSGRKLRDFP---GSGYDLTDTTQADLS 119
Query: 261 RNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQL 440
RNRF E+P LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+ L
Sbjct: 120 RNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDL 179
Query: 441 PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLST 620
PL+VL+VSNNKL ++P +I L L +LD+S N R+LN+RRN L
Sbjct: 180 PLKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHV 239
Query: 621 LPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFK 800
LPDELGDLPLV+LDFSCN+V+ IPV + +L HLQVI+LD+NPLQ PPAQ+CLKGK+HIFK
Sbjct: 240 LPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFK 299
Query: 801 YLSTEAGRRGGS--------ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDS 956
YL+ +A R +L PS+P + S ED +P + + G DSG S D+
Sbjct: 300 YLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS-DN 353
Query: 957 GSKRWSGNE-STDEFSELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFID 1109
G KR S E S D+ L ++SE GS + D E DF+D
Sbjct: 354 GEKRLSTTEPSDDDTVSLHSQVSESNREQTSRNDSHIIGSKTDSQKDQEVYDFVD 408
>ref|NP_001230892.1| leucine-rich repeat and calponin homology domain-containing protein 2
isoform 2 [Homo sapiens].
Length = 748
Score = 280 bits (716), Expect = 2e-75
Identities = 168/355 (47%), Positives = 216/355 (60%), Gaps = 19/355 (5%)
Frame = +3
Query: 102 GSPGLPGS-------RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLS 260
G P PGS RS +RALEEA ++G L+LS R+L+ FP YDL+D TQADLS
Sbjct: 63 GPPWNPGSLQPQHTVRSLDRALEEAGSSGILSLSGRKLRDFP---GSGYDLTDTTQADLS 119
Query: 261 RNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQL 440
RNRF E+P LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+ L
Sbjct: 120 RNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDL 179
Query: 441 PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLST 620
PL+VL+VSNNKL ++P +I L L +LD+S N R+LN+RRN L
Sbjct: 180 PLKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHV 239
Query: 621 LPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFK 800
LPDELGDLPLV+LDFSCN+V+ IPV + +L HLQVI+LD+NPLQ PPAQ+CLKGK+HIFK
Sbjct: 240 LPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFK 299
Query: 801 YLSTEAGRRGGS--------ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDS 956
YL+ +A R +L PS+P + S ED +P + + G DSG S D+
Sbjct: 300 YLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS-DN 353
Query: 957 GSKRWSGNE-STDEFSELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFID 1109
G KR S E S D+ L ++SE GS + D E DF+D
Sbjct: 354 GEKRLSTTEPSDDDTVSLHSQVSESNREQTSRNDSHIIGSKTDSQKDQEVYDFVD 408
>ref|NP_001157685.1| leucine-rich repeat and calponin homology domain-containing protein
1 isoform 3 [Homo sapiens].
Length = 696
Score = 275 bits (703), Expect = 6e-74
Identities = 158/299 (52%), Positives = 194/299 (64%), Gaps = 1/299 (0%)
Frame = +3
Query: 102 GSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEV 281
G LP +R ERALEEA +G LNLS R+LK FPR AA +DLSD QADLS+NR EV
Sbjct: 53 GGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEV 112
Query: 282 PEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIV 461
P C VSLE L+LYHNC+R + A+ NL LTYLNLSRNQLS+LP +C LPL+VLI
Sbjct: 113 PMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIA 172
Query: 462 SNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGD 641
SNNKLG+LP +I L L +LDVS N R+LNVRRN L LP EL D
Sbjct: 173 SNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVD 232
Query: 642 LPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAG 821
LPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK+HIFKYLS +A
Sbjct: 233 LPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQAC 292
Query: 822 R-RGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
+ + +L RP + + G++ DSG S D+G KR S E +DE
Sbjct: 293 QIKTADSLYLHTMERPHLH-----QHVEDGKK---DSDSGVGS-DNGDKRLSATEPSDE 342
>ref|NP_001157683.1| leucine-rich repeat and calponin homology domain-containing protein
1 isoform 1 [Homo sapiens].
Length = 763
Score = 275 bits (703), Expect = 6e-74
Identities = 158/299 (52%), Positives = 194/299 (64%), Gaps = 1/299 (0%)
Frame = +3
Query: 102 GSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEV 281
G LP +R ERALEEA +G LNLS R+LK FPR AA +DLSD QADLS+NR EV
Sbjct: 53 GGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEV 112
Query: 282 PEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIV 461
P C VSLE L+LYHNC+R + A+ NL LTYLNLSRNQLS+LP +C LPL+VLI
Sbjct: 113 PMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIA 172
Query: 462 SNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGD 641
SNNKLG+LP +I L L +LDVS N R+LNVRRN L LP EL D
Sbjct: 173 SNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVD 232
Query: 642 LPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAG 821
LPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK+HIFKYLS +A
Sbjct: 233 LPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQAC 292
Query: 822 R-RGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
+ + +L RP + + G++ DSG S D+G KR S E +DE
Sbjct: 293 QIKTADSLYLHTMERPHLH-----QHVEDGKK---DSDSGVGS-DNGDKRLSATEPSDE 342
>ref|NP_055931.1| leucine-rich repeat and calponin homology domain-containing protein
1 isoform 2 [Homo sapiens].
Length = 728
Score = 275 bits (703), Expect = 6e-74
Identities = 158/299 (52%), Positives = 194/299 (64%), Gaps = 1/299 (0%)
Frame = +3
Query: 102 GSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEV 281
G LP +R ERALEEA +G LNLS R+LK FPR AA +DLSD QADLS+NR EV
Sbjct: 53 GGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEV 112
Query: 282 PEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIV 461
P C VSLE L+LYHNC+R + A+ NL LTYLNLSRNQLS+LP +C LPL+VLI
Sbjct: 113 PMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIA 172
Query: 462 SNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGD 641
SNNKLG+LP +I L L +LDVS N R+LNVRRN L LP EL D
Sbjct: 173 SNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVD 232
Query: 642 LPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAG 821
LPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK+HIFKYLS +A
Sbjct: 233 LPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQAC 292
Query: 822 R-RGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
+ + +L RP + + G++ DSG S D+G KR S E +DE
Sbjct: 293 QIKTADSLYLHTMERPHLH-----QHVEDGKK---DSDSGVGS-DNGDKRLSATEPSDE 342
>ref|NP_004216.2| malignant fibrous histiocytoma-amplified sequence 1 [Homo sapiens].
Length = 1052
Score = 93.6 bits (231), Expect = 3e-19
Identities = 81/257 (31%), Positives = 113/257 (43%), Gaps = 25/257 (9%)
Frame = +3
Query: 108 PGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPE 287
P LP A LEE L++S RL H P + LS + D+ N+ P
Sbjct: 148 PALPAQLGALAHLEE------LDVSFNRLAHLPDSLSC---LSRLRTLDVDHNQLTAFPR 198
Query: 288 AACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVS 464
QLV+LE L + N LR L + L AL L LS +L +LP C+L L L++
Sbjct: 199 QLLQLVALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPAGFCELASLESLMLD 258
Query: 465 NNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL 644
NN L ALP S L L+ L++SSN +L + RNQL+++P + L
Sbjct: 259 NNGLQALPAQFSCLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSLISGL 318
Query: 645 -PLVRLDFSCNRVSRIPVSFCRLRHLQVILLD-----------------------SNPLQ 752
L+ L NR+ +P S L L+ ++L NPL
Sbjct: 319 GRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDHFGQLSRVGLWKIKDNPLI 378
Query: 753 SPPAQVCLKGKLHIFKY 803
PP +VC+KG +I Y
Sbjct: 379 QPPYEVCMKGIPYIAAY 395
Score = 82.4 bits (202), Expect = 7e-16
Identities = 73/213 (34%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Frame = +3
Query: 228 DLSDITQADLSRNRFPEVPEA-ACQLVSLEGLSLYHNCLRCLNPALGNLTA-LTYLNLSR 401
+L DI +L N EVPE L SL L L N L PA+ L LT L++S
Sbjct: 61 NLGDIEALNLGNNGLEEVPEGLGSALGSLRVLVLRRNRFARLPPAVAELGHHLTELDVSH 120
Query: 402 NQLSSLPPYICQL--PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXX 575
N+L++L + LR L +S+N+L ALP + AL L +LDVS N
Sbjct: 121 NRLTALGAEVVSALRELRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCL 180
Query: 576 XXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSCNR-----------------------VS 683
R L+V NQL+ P +L L L LD S NR +
Sbjct: 181 SRLRTLDVDHNQLTAFPRQLLQLVALEELDVSSNRLRGLPEDISALRALKILWLSGAELG 240
Query: 684 RIPVSFCRLRHLQVILLDSNPLQSPPAQV-CLK 779
+P FC L L+ ++LD+N LQ+ PAQ CL+
Sbjct: 241 TLPAGFCELASLESLMLDNNGLQALPAQFSCLQ 273
>ref|NP_665894.2| p53-induced protein with a death domain isoform 3 [Homo sapiens].
Length = 893
Score = 92.0 bits (227), Expect = 9e-19
Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 2/188 (1%)
Frame = +3
Query: 192 LKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNL 371
L + P G + L+ + DLS N +P Q+ L L L HNCL L ALG L
Sbjct: 114 LTNLPAGLS---GLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALGAL 170
Query: 372 TALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXX 548
ALT+L ++ N+L +LPP + L L+ L +S N L LPP+I LGSL +L+++SN
Sbjct: 171 PALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQ 230
Query: 549 XXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLV-RLDFSCNRVSRIPVSFCRLRHLQV 725
R L + N L+++P +L LPL+ RLD N++ +P L
Sbjct: 231 SLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPP---ELLDAPF 287
Query: 726 ILLDSNPL 749
+ L NPL
Sbjct: 288 VRLQGNPL 295
Score = 55.8 bits (133), Expect = 7e-08
Identities = 53/151 (35%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Frame = +3
Query: 345 CLNPALGNLTA-------LTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGALPPDIS 500
CL AL NL A L +L+LS N L +LP + Q+ L L++S+N L LP +
Sbjct: 109 CLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALG 168
Query: 501 ALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNR 677
AL +L L V+ N+L TLP LG L L RLD S N
Sbjct: 169 ALPALTFLTVT-----------------------HNRLQTLPPALGALSTLQRLDLSQNL 205
Query: 678 VSRIPVSFCRLRHLQVILLDSNPLQSPPAQV 770
+ +P L L + L SN LQS PA +
Sbjct: 206 LDTLPPEIGGLGSLLELNLASNRLQSLPASL 236
>ref|NP_665893.2| p53-induced protein with a death domain isoform 1 [Homo sapiens].
Length = 910
Score = 92.0 bits (227), Expect = 9e-19
Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 2/188 (1%)
Frame = +3
Query: 192 LKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNL 371
L + P G + L+ + DLS N +P Q+ L L L HNCL L ALG L
Sbjct: 114 LTNLPAGLS---GLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALGAL 170
Query: 372 TALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXX 548
ALT+L ++ N+L +LPP + L L+ L +S N L LPP+I LGSL +L+++SN
Sbjct: 171 PALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQ 230
Query: 549 XXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLV-RLDFSCNRVSRIPVSFCRLRHLQV 725
R L + N L+++P +L LPL+ RLD N++ +P L
Sbjct: 231 SLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPP---ELLDAPF 287
Query: 726 ILLDSNPL 749
+ L NPL
Sbjct: 288 VRLQGNPL 295
Score = 55.8 bits (133), Expect = 7e-08
Identities = 53/151 (35%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Frame = +3
Query: 345 CLNPALGNLTA-------LTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGALPPDIS 500
CL AL NL A L +L+LS N L +LP + Q+ L L++S+N L LP +
Sbjct: 109 CLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALG 168
Query: 501 ALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNR 677
AL +L L V+ N+L TLP LG L L RLD S N
Sbjct: 169 ALPALTFLTVT-----------------------HNRLQTLPPALGALSTLQRLDLSQNL 205
Query: 678 VSRIPVSFCRLRHLQVILLDSNPLQSPPAQV 770
+ +P L L + L SN LQS PA +
Sbjct: 206 LDTLPPEIGGLGSLLELNLASNRLQSLPASL 236
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,628,187
Number of extensions: 1416930
Number of successful extensions: 10331
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 9888
Number of HSP's successfully gapped: 108
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003221
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001162123.1| leucine-rich repeat and calponin homology do... 603 e-173
Alignment gi|NP_666276.1| leucine-rich repeat and calponin homology domai... 603 e-173
Alignment gi|NP_001074724.1| leucine-rich repeat and calponin homology do... 338 6e-93
Alignment gi|NP_001074642.1| leucine-rich repeat and calponin homology do... 277 9e-75
Alignment gi|NP_001028611.2| leucine-rich repeat and calponin homology do... 271 9e-73
Alignment gi|NP_001074748.1| malignant fibrous histiocytoma-amplified seq... 92 1e-18
Alignment gi|NP_080944.2| leucine-rich repeat and IQ domain-containing pr... 88 1e-17
Alignment gi|NP_780333.3| leucine-rich repeat-containing protein 28 isofo... 87 3e-17
Alignment gi|NP_598850.1| protein scribble homolog [Mus musculus]. 86 5e-17
Alignment gi|NP_001153082.1| leucine-rich repeat-containing protein 57 is... 85 9e-17
>ref|NP_001162123.1| leucine-rich repeat and calponin homology domain-containing protein 4
isoform 2 [Mus musculus].
Length = 649
Score = 603 bits (1555), Expect = e-173
Identities = 302/344 (87%), Positives = 312/344 (90%)
Frame = +3
Query: 96 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 275
+PGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP
Sbjct: 22 LPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 81
Query: 276 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 455
EVPEAACQLVSLEGLSLYHNCL+CLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL
Sbjct: 82 EVPEAACQLVSLEGLSLYHNCLKCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 141
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
I+SNNKLGALPPDIS LGSLRQLDVSSN RDLNVRRNQLSTLPDEL
Sbjct: 142 IISNNKLGALPPDISTLGSLRQLDVSSNELQSLPVELCSLRSLRDLNVRRNQLSTLPDEL 201
Query: 636 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 815
GDLPLVRLDFSCNR+SRIPVSFCRLRHLQV+LLDSNPLQSPPAQ+CLKGKLHIFKYL+ E
Sbjct: 202 GDLPLVRLDFSCNRISRIPVSFCRLRHLQVVLLDSNPLQSPPAQICLKGKLHIFKYLTME 261
Query: 816 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
AGRR G+ALGDL PSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTD+
Sbjct: 262 AGRR-GAALGDLVPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDD 320
Query: 996 FSELSFRISELAXXXXXXXXXXXDGSADGDPEQIDFIDSHVPGE 1127
FSELSFRISELA DG+ DGD EQIDFIDSHVPGE
Sbjct: 321 FSELSFRISELARDPRGPRQPREDGAGDGDLEQIDFIDSHVPGE 364
>ref|NP_666276.1| leucine-rich repeat and calponin homology domain-containing protein 4
isoform 1 [Mus musculus].
Length = 680
Score = 603 bits (1555), Expect = e-173
Identities = 302/344 (87%), Positives = 312/344 (90%)
Frame = +3
Query: 96 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 275
+PGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP
Sbjct: 22 LPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 81
Query: 276 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 455
EVPEAACQLVSLEGLSLYHNCL+CLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL
Sbjct: 82 EVPEAACQLVSLEGLSLYHNCLKCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 141
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
I+SNNKLGALPPDIS LGSLRQLDVSSN RDLNVRRNQLSTLPDEL
Sbjct: 142 IISNNKLGALPPDISTLGSLRQLDVSSNELQSLPVELCSLRSLRDLNVRRNQLSTLPDEL 201
Query: 636 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 815
GDLPLVRLDFSCNR+SRIPVSFCRLRHLQV+LLDSNPLQSPPAQ+CLKGKLHIFKYL+ E
Sbjct: 202 GDLPLVRLDFSCNRISRIPVSFCRLRHLQVVLLDSNPLQSPPAQICLKGKLHIFKYLTME 261
Query: 816 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
AGRR G+ALGDL PSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTD+
Sbjct: 262 AGRR-GAALGDLVPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDD 320
Query: 996 FSELSFRISELAXXXXXXXXXXXDGSADGDPEQIDFIDSHVPGE 1127
FSELSFRISELA DG+ DGD EQIDFIDSHVPGE
Sbjct: 321 FSELSFRISELARDPRGPRQPREDGAGDGDLEQIDFIDSHVPGE 364
>ref|NP_001074724.1| leucine-rich repeat and calponin homology domain-containing protein 3
precursor [Mus musculus].
Length = 778
Score = 338 bits (866), Expect = 6e-93
Identities = 189/359 (52%), Positives = 238/359 (66%), Gaps = 23/359 (6%)
Frame = +3
Query: 105 SPGL-----PGS--RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSR 263
SPGL PGS RS +RALEEA TG L+LS R+L+ FPRGAA ++DL+D T+ADLSR
Sbjct: 33 SPGLGPGPGPGSWSRSVDRALEEAAVTGVLSLSGRKLREFPRGAA-NHDLTDTTRADLSR 91
Query: 264 NRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP 443
NR E+P AC VSLE L+LY NC+R + A+ NL ALT+LN+SRNQLS+LP ++C LP
Sbjct: 92 NRLSEIPMEACHFVSLESLNLYQNCIRYIPEAVLNLQALTFLNISRNQLSTLPVHLCNLP 151
Query: 444 LRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTL 623
L+VLI SNNKL +LP +I L L +LDVS N RD NVRRN L L
Sbjct: 152 LKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLLRL 211
Query: 624 PDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKY 803
P+EL ++PL+RLDFSCN+++ IPV + LRHLQVI LD+NPLQSPPAQ+C+KGK+HIFKY
Sbjct: 212 PEELAEVPLIRLDFSCNKITVIPVCYRNLRHLQVITLDNNPLQSPPAQICIKGKIHIFKY 271
Query: 804 LSTEAGRRGGSALGDLAPS------RPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSK 965
L+ +A + +AP RP F C E+L+ GR Y G LDSGF+SVDSG K
Sbjct: 272 LNIQACK--------IAPDLPDYERRPLGFGSC-HEELYSGRPY-GALDSGFNSVDSGDK 321
Query: 966 RWSGNESTDEFSELSFRISELA----------XXXXXXXXXXXDGSADGDPEQIDFIDS 1112
RWSGNE TDEFS+L R++E+ +G + D +QID+IDS
Sbjct: 322 RWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRSSVAVTNGGVEHDLDQIDYIDS 380
>ref|NP_001074642.1| leucine-rich repeat and calponin homology domain-containing protein 2
[Mus musculus].
Length = 773
Score = 277 bits (709), Expect = 9e-75
Identities = 164/340 (48%), Positives = 210/340 (61%), Gaps = 12/340 (3%)
Frame = +3
Query: 126 RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLV 305
RS +RALEEA +G L+LS R+L+ FP YDL+D TQADLSRNRF E+P
Sbjct: 86 RSLDRALEEAGNSGILSLSGRKLREFP---GSGYDLTDTTQADLSRNRFTEIPSDVWLFA 142
Query: 306 SLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGAL 485
LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+ LPL+VL+VSNNKL ++
Sbjct: 143 PLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSI 202
Query: 486 PPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVRLDF 665
P +I L L +LDVS N ++LN+RRN L LPDELGDLPLV+LDF
Sbjct: 203 PEEIGKLKDLMELDVSCNEIQVLPQQMGKLHSLKELNIRRNNLHVLPDELGDLPLVKLDF 262
Query: 666 SCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGGS--- 836
SCN+V+ IPV + +L HLQVI+LD+NPLQ PPAQ+CLKGK+HIFKYL+ +A R
Sbjct: 263 SCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPD 322
Query: 837 -----ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNE-STDEF 998
+L PS+P + S ED +P + + G DSG S D+G KR S E S D+
Sbjct: 323 SLDLPSLNKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS-DNGEKRLSTTEPSDDDT 376
Query: 999 SELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFID 1109
L ++SE GS + D E DFID
Sbjct: 377 ISLHSQVSESNREQTSRNDSHITGSKPDSQKDQEVYDFID 416
>ref|NP_001028611.2| leucine-rich repeat and calponin homology domain-containing protein
1 [Mus musculus].
Length = 709
Score = 271 bits (692), Expect = 9e-73
Identities = 156/294 (53%), Positives = 189/294 (64%)
Frame = +3
Query: 114 LPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAA 293
LP +R ERALEEA +G LNLS R+LK FPR A +DLSD +ADLS+NR EVP
Sbjct: 47 LPLNRGLERALEEAANSGGLNLSARKLKEFPRTTAPGHDLSDTVRADLSKNRLVEVPMEL 106
Query: 294 CQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNK 473
CQ VSLE L+LYHNC+R + A+ NL LT+LNLSRNQLS+LP +C LPL+VLI SNNK
Sbjct: 107 CQFVSLEILNLYHNCIRVIPEAIVNLQMLTHLNLSRNQLSALPACLCGLPLKVLIASNNK 166
Query: 474 LGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLV 653
LG+LP +I L L +LDVS N R+LNVRRN L LP EL DLPLV
Sbjct: 167 LGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPPELVDLPLV 226
Query: 654 RLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTEAGRRGG 833
+ DFSCN+V IPV F ++ LQV+LL++NPLQSPPAQ+C KGK+HIFKYLS +A +
Sbjct: 227 KFDFSCNKVLVIPVCFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKT 286
Query: 834 SALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
S L P ED + D G+ S D+G KR S E +DE
Sbjct: 287 SDSLYLPTIERPHLHQ-HVED--SKKDSDSGVGS-----DNGDKRLSATEPSDE 332
>ref|NP_001074748.1| malignant fibrous histiocytoma-amplified sequence 1 homolog [Mus
musculus].
Length = 1048
Score = 91.7 bits (226), Expect = 1e-18
Identities = 79/257 (30%), Positives = 114/257 (44%), Gaps = 25/257 (9%)
Frame = +3
Query: 108 PGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPE 287
P LP A LEE L++S RL H P + L+ + D+ N+ P+
Sbjct: 144 PALPAQLGALAHLEE------LDVSFNRLAHLPDSFSC---LNHLRTLDVDHNQLTAFPQ 194
Query: 288 AACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVS 464
QL +LE L + N LR L + L AL L LS +L +LP C+L L L++
Sbjct: 195 QLLQLAALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPRGFCELASLESLMLD 254
Query: 465 NNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL 644
NN L ALP + S L L+ L++SSN +L + RNQL+++P + L
Sbjct: 255 NNGLQALPDEFSRLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSLIAGL 314
Query: 645 -PLVRLDFSCNRVSRIPVSFCRLRHLQVILLD-----------------------SNPLQ 752
L+ L NR+ +P S L L+ ++L NPL
Sbjct: 315 GRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDNFGQLSRVGLWKIKDNPLI 374
Query: 753 SPPAQVCLKGKLHIFKY 803
PP +VC+KG +I Y
Sbjct: 375 QPPYEVCMKGIPYIAAY 391
Score = 76.6 bits (187), Expect = 3e-14
Identities = 64/187 (34%), Positives = 88/187 (47%), Gaps = 5/187 (2%)
Frame = +3
Query: 228 DLSDITQADLSRNRFPEVPEA-ACQLVSLEGLSLYHNCLRCLNPALGNLTA-LTYLNLSR 401
++ DI +L N +VPE L SL L L N L PA+ L LT L++S
Sbjct: 57 NIGDIEVLNLGNNGLEDVPEGLGSALGSLRVLVLRRNRFARLPPAVAELGHHLTELDVSH 116
Query: 402 NQLSSLPPYICQL--PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXX 575
N+L+ L + LR L +S+N+L ALP + AL L +LDVS N
Sbjct: 117 NRLTILGAEVVSALRELRKLNLSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSFSCL 176
Query: 576 XXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQ 752
R L+V NQL+ P +L L L LD S NR+ +P LR L+++ L L
Sbjct: 177 NHLRTLDVDHNQLTAFPQQLLQLAALEELDVSSNRLRGLPEDISALRALKILWLSGAELG 236
Query: 753 SPPAQVC 773
+ P C
Sbjct: 237 TLPRGFC 243
>ref|NP_080944.2| leucine-rich repeat and IQ domain-containing protein 4 [Mus
musculus].
Length = 596
Score = 87.8 bits (216), Expect = 1e-17
Identities = 74/284 (26%), Positives = 118/284 (41%), Gaps = 51/284 (17%)
Frame = +3
Query: 129 SAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVS 308
S +L + L+L++ + P L+++T+ LS NR +VP C VS
Sbjct: 261 SLPESLSQCSKLSVLDLTHNSIHSLPSSLEL---LTELTEVGLSGNRLEKVPRLLCSWVS 317
Query: 309 LEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGAL 485
L L L + L L + L L +L+LS+N + P IC L L +L + +NK+ L
Sbjct: 318 LHLLYLRNTSLHGLRDSFKRLINLRFLDLSQNHIEHFPVQICALKNLEILALDDNKVRQL 377
Query: 486 PPDISALGSLRQLDVSSN--------------------------XXXXXXXXXXXXXXXR 587
PP IS L +L+ L ++ N +
Sbjct: 378 PPSISLLSNLKILGLTGNDLLSFPEEIFSLISLEKLYIGQDQGSKLSSLPENIKRLMNLK 437
Query: 588 DLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFCRLRHLQVILLD--------- 737
+L + N+L LP LG +P L LD N + ++P + CR R+L+ +LL+
Sbjct: 438 ELYIENNRLEQLPASLGLMPNLEVLDCRHNLLKQLPDAICRTRNLRELLLEDNLLCCLPE 497
Query: 738 --------------SNPLQSPPAQVCLKGKLHIFKYLSTEAGRR 827
+NP+ PP VC +G I+K+L R+
Sbjct: 498 NLDHLVNLKVLTLMNNPMVDPPIYVCNQGNEAIWKHLKENRIRK 541
Score = 58.9 bits (141), Expect = 7e-09
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 28/236 (11%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
++L +LK P L A N +PE+ Q L L L HN + L
Sbjct: 229 IDLDENKLKSIPGDIGHLVRLQKFYVAS---NHLMSLPESLSQCSKLSVLDLTHNSIHSL 285
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYICQ------------------------LPLRVLI 458
+L LT LT + LS N+L +P +C + LR L
Sbjct: 286 PSSLELLTELTEVGLSGNRLEKVPRLLCSWVSLHLLYLRNTSLHGLRDSFKRLINLRFLD 345
Query: 459 VSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELG 638
+S N + P I AL +L L + N + L + N L + P+E+
Sbjct: 346 LSQNHIEHFPVQICALKNLEILALDDNKVRQLPPSISLLSNLKILGLTGNDLLSFPEEIF 405
Query: 639 DL-PLVRL---DFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHI 794
L L +L +++S +P + RL +L+ + +++N L+ PA + L L +
Sbjct: 406 SLISLEKLYIGQDQGSKLSSLPENIKRLMNLKELYIENNRLEQLPASLGLMPNLEV 461
>ref|NP_780333.3| leucine-rich repeat-containing protein 28 isoform 1 [Mus musculus].
Length = 367
Score = 86.7 bits (213), Expect = 3e-17
Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQ-LVSLEGLSLYHNCLRC 347
L L+ R L HFP + L + + + RN +PE Q L +L L L+ N +
Sbjct: 20 LFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVV 79
Query: 348 LNPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQL 524
+ A+G+L L L+LS N L + P I L LR L ++NN+L LPP++ L L+ L
Sbjct: 80 VPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLANNQLQFLPPEVGDLKELQTL 139
Query: 525 DVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSF 701
D+SSN + L V RN+L +P L LP L L + N ++ +P+
Sbjct: 140 DISSNRLLALPERLHLCLSLQYLTVDRNRLCCVPRHLCQLPSLNELSMAGNHLASLPIDL 199
Query: 702 CRLRHLQVILLDSN 743
R R LQ + +D+N
Sbjct: 200 GRSRELQYVYVDNN 213
Score = 60.8 bits (146), Expect = 2e-09
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Frame = +3
Query: 321 SLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQ-LPLRV-LIVSNNKLGALPPD 494
+L+H L L L L L + RN L++LP + Q LP V L + +N + +P
Sbjct: 26 NLHHFPLELLKDE--GLQHLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVVVPEA 83
Query: 495 ISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSC 671
I +L L+ LD+S N R L + NQL LP E+GDL L LD S
Sbjct: 84 IGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLANNQLQFLPPEVGDLKELQTLDISS 143
Query: 672 NRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVC 773
NR+ +P LQ + +D N L P +C
Sbjct: 144 NRLLALPERLHLCLSLQYLTVDRNRLCCVPRHLC 177
>ref|NP_598850.1| protein scribble homolog [Mus musculus].
Length = 1665
Score = 85.9 bits (211), Expect = 5e-17
Identities = 73/212 (34%), Positives = 99/212 (46%), Gaps = 2/212 (0%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L LS+ ++ P A L ++ D+SRN PE+PE+ +LE N L L
Sbjct: 64 LGLSDNEIQRLPPEVANFMQLVEL---DVSRNDIPEIPESIKFCKALEIADFSGNPLSRL 120
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGALPPDISALGSLRQLD 527
L +L +L L+ L +LP + L L L + N L +LP +S L L QLD
Sbjct: 121 PDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLPASLSFLVKLEQLD 180
Query: 528 VSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFC 704
+ N R+L + RNQLS LP ELG+L LV LD S NR+ +PV
Sbjct: 181 LGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRRLVCLDVSENRLEELPVELG 240
Query: 705 RLRHLQVILLDSNPLQSPPAQVCLKGKLHIFK 800
L L +LL N LQ P + +L I K
Sbjct: 241 GLALLTDLLLSQNLLQRLPEGIGQLKQLSILK 272
Score = 69.7 bits (169), Expect = 4e-12
Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 2/183 (1%)
Frame = +3
Query: 228 DLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQ 407
+L+++ +L N +P + LV LE L L N L L LG L L L L RNQ
Sbjct: 149 NLANLVTLELRENLLKSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQ 208
Query: 408 LSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXX 584
LS+LPP + L L L VS N+L LP ++ L L L +S N
Sbjct: 209 LSALPPELGNLRRLVCLDVSENRLEELPVELGGLALLTDLLLSQNLLQRLPEGIGQLKQL 268
Query: 585 RDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPP 761
L V +N+L + + +GD L L + N ++ +P S +L L + +D N L+ P
Sbjct: 269 SILKVDQNRLCEVTEAIGDCENLSELILTENLLTALPHSLGKLTKLTNLNVDRNHLEVLP 328
Query: 762 AQV 770
++
Sbjct: 329 PEI 331
Score = 68.9 bits (167), Expect = 7e-12
Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L LS L+ P G + LS + + +NR EV EA +L L L N L L
Sbjct: 248 LLLSQNLLQRLPEGIGQLKQLSILK---VDQNRLCEVTEAIGDCENLSELILTENLLTAL 304
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYI--CQLPLRVLIVSNNKLGALPPDISALGSLRQL 524
+LG LT LT LN+ RN L LPP I C + L VL + +N+L LPP+++ L L
Sbjct: 305 PHSLGKLTKLTNLNVDRNHLEVLPPEIGGC-VALSVLSLRDNRLAVLPPELAHTAELHVL 363
Query: 525 DVSSN 539
DV+ N
Sbjct: 364 DVAGN 368
Score = 65.5 bits (158), Expect = 7e-11
Identities = 67/223 (30%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Frame = +3
Query: 168 TLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRC 347
TL L LK P A+ S+ L + Q DL N +P+ L +L L L N L
Sbjct: 155 TLELRENLLKSLP--ASLSF-LVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSA 211
Query: 348 LNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRV-LIVSNNKLGALPPDISALG----- 509
L P LGNL L L++S N+L LP + L L L++S N L LP I L
Sbjct: 212 LPPELGNLRRLVCLDVSENRLEELPVELGGLALLTDLLLSQNLLQRLPEGIGQLKQLSIL 271
Query: 510 ------------------SLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
+L +L ++ N +LNV RN L LP E+
Sbjct: 272 KVDQNRLCEVTEAIGDCENLSELILTENLLTALPHSLGKLTKLTNLNVDRNHLEVLPPEI 331
Query: 636 GD-LPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPP 761
G + L L NR++ +P L V+ + N L+S P
Sbjct: 332 GGCVALSVLSLRDNRLAVLPPELAHTAELHVLDVAGNRLRSLP 374
Score = 52.8 bits (125), Expect = 5e-07
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Frame = +3
Query: 375 ALTYLNLSRNQLSSLP-PYICQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXX 551
+L L L NQL LP P+ L LR L +S+N++ LPP+++ L +LDVS
Sbjct: 37 SLEELLLDANQLRELPKPFFRLLNLRKLGLSDNEIQRLPPEVANFMQLVELDVS------ 90
Query: 552 XXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVRL-DFSCNRVSRIPVSFCRLRHLQVI 728
RN + +P+ + + + DFS N +SR+P F +LR L +
Sbjct: 91 -----------------RNDIPEIPESIKFCKALEIADFSGNPLSRLPDGFTQLRSLAHL 133
Query: 729 LLDSNPLQSPPAQV 770
L+ LQ+ P V
Sbjct: 134 ALNDVSLQALPGDV 147
Score = 49.3 bits (116), Expect = 5e-06
Identities = 47/154 (30%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Frame = +3
Query: 306 SLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQ-LPLRVLIVSNNKLGA 482
SLE L L N LR L L L L LS N++ LPP + + L L VS N +
Sbjct: 37 SLEELLLDANQLRELPKPFFRLLNLRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPE 96
Query: 483 LPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRL 659
+P I +L D S N L + L LP ++G+L LV L
Sbjct: 97 IPESIKFCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTL 156
Query: 660 DFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPP 761
+ N + +P S L L+ + L N L+ P
Sbjct: 157 ELRENLLKSLPASLSFLVKLEQLDLGGNDLEVLP 190
>ref|NP_001153082.1| leucine-rich repeat-containing protein 57 isoform a [Mus musculus].
Length = 281
Score = 85.1 bits (209), Expect = 9e-17
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 3/219 (1%)
Frame = +3
Query: 105 SPGLPGSRSAERA-LEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEV 281
S G SA RA +E A TG L +R L FP + S++ DLS N+ +
Sbjct: 38 SRGARMGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKL--TSNLRTIDLSNNKIDSL 95
Query: 282 PEAAC-QLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVL 455
P + L+ LSL +N L L L NL L L+L+ N L LP QL L+ L
Sbjct: 96 PPLIIGKFTLLKSLSLNNNKLTVLPDELCNLKKLETLSLNNNHLRELPSTFGQLSALKTL 155
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
+S N+LGALPP + L R LDV +++ +NQ+ ++PD +
Sbjct: 156 SLSGNQLGALPPQLCCL---RHLDV--------------------VDLSKNQIRSIPDTV 192
Query: 636 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQ 752
G+L + L+ + N++S++ V L+V+ L+ N L+
Sbjct: 193 GELQAIELNLNQNQISQLSVKISCCPRLKVLRLEENCLE 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,048,659
Number of extensions: 1162275
Number of successful extensions: 8234
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 7807
Number of HSP's successfully gapped: 108
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003221
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124415.2| PREDICTED: leucine-rich repeat and calponin ... 629 0.0
Alignment gi|XP_003132664.2| PREDICTED: leucine-rich repeat and calponin ... 338 2e-93
Alignment gi|XP_001924728.3| PREDICTED: leucine-rich repeat and calponin ... 236 2e-62
Alignment gi|XP_003358823.1| PREDICTED: leucine-rich repeat and calponin ... 162 4e-40
Alignment gi|XP_003131023.2| PREDICTED: leucine-rich repeat and calponin ... 122 5e-28
Alignment gi|XP_003131024.2| PREDICTED: leucine-rich repeat and calponin ... 96 3e-20
Alignment gi|XP_003127976.1| PREDICTED: leucine-rich repeat-containing pr... 86 3e-17
Alignment gi|XP_003121620.2| PREDICTED: leucine-rich repeat-containing pr... 82 4e-16
Alignment gi|XP_003130183.2| PREDICTED: leucine-rich repeat and death dom... 81 1e-15
Alignment gi|XP_001927723.2| PREDICTED: leucine-rich repeat-containing pr... 79 4e-15
>ref|XP_003124415.2| PREDICTED: leucine-rich repeat and calponin homology
domain-containing protein 4 [Sus scrofa].
Length = 690
Score = 629 bits (1623), Expect = 0.0
Identities = 318/344 (92%), Positives = 318/344 (92%)
Frame = +3
Query: 96 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 275
VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP
Sbjct: 22 VPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFP 81
Query: 276 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 455
EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL
Sbjct: 82 EVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVL 141
Query: 456 IVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDEL 635
IVSNNKLGALPPDISALGSLRQLDVSSN RDLNVRRNQLSTLPDEL
Sbjct: 142 IVSNNKLGALPPDISALGSLRQLDVSSNELQSLPSELCSLPSLRDLNVRRNQLSTLPDEL 201
Query: 636 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 815
GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE
Sbjct: 202 GDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 261
Query: 816 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 995
AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE
Sbjct: 262 AGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDE 321
Query: 996 FSELSFRISELAXXXXXXXXXXXDGSADGDPEQIDFIDSHVPGE 1127
FSELSFRISELA DGSADGDPEQIDFIDSHVPGE
Sbjct: 322 FSELSFRISELAREPRGPRERREDGSADGDPEQIDFIDSHVPGE 365
>ref|XP_003132664.2| PREDICTED: leucine-rich repeat and calponin homology
domain-containing protein 3 isoform 1 [Sus scrofa].
Length = 722
Score = 338 bits (868), Expect = 2e-93
Identities = 190/356 (53%), Positives = 239/356 (67%), Gaps = 18/356 (5%)
Frame = +3
Query: 99 PGSPGLPGS--RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRF 272
PG PG PGS RS +RALEEA TG L+LS R+L+ FPRGAA ++DL+D T+ADLSRNR
Sbjct: 38 PG-PG-PGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAA-NHDLTDTTRADLSRNRL 94
Query: 273 PEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRV 452
E+P AC VSLE L+LY NC+R + A+ NL ALT+LN+SRNQLS+LP ++C LPL+V
Sbjct: 95 SEIPIEACHFVSLESLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKV 154
Query: 453 LIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDE 632
LI SNNKL +LP +I L L +LDVS N RDLNVRRN L LP+E
Sbjct: 155 LIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEE 214
Query: 633 LGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLST 812
L +LPL+RLDFSCN+++ IPV + LRHLQ+I LD+NPLQSPPAQ+C+KGK+HIFKYL+
Sbjct: 215 LAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNI 274
Query: 813 EAGRRGGSALGDLAPS------RPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWS 974
+A + +AP RP F C E+L+ GR Y G LDSGF+SVDSG KRWS
Sbjct: 275 QACK--------IAPDLPDYDRRPMGFGSC-HEELYSGRPY-GALDSGFNSVDSGDKRWS 324
Query: 975 GNESTDEFSELSFRISELA----------XXXXXXXXXXXDGSADGDPEQIDFIDS 1112
GNE TDEFS+L R++E+ +G + D +QID+IDS
Sbjct: 325 GNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDS 380
>ref|XP_001924728.3| PREDICTED: leucine-rich repeat and calponin homology
domain-containing protein 2 [Sus scrofa].
Length = 698
Score = 236 bits (602), Expect = 2e-62
Identities = 139/298 (46%), Positives = 181/298 (60%), Gaps = 12/298 (4%)
Frame = +3
Query: 252 DLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYI 431
+LSRNRF E+P LE L+LYHNC++ + A+ NL LTYLN+SRN LS+LP Y+
Sbjct: 51 NLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYL 110
Query: 432 CQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQ 611
LPL+VL++SNNKL ++P +I L L +LD+S N R+LN+RRN
Sbjct: 111 FDLPLKVLVLSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNN 170
Query: 612 LSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLH 791
L LPDELGDLPLV+LDFSCN+V+ IPV + +L HLQVI+LD+NPLQ PPAQ+CLKGK+H
Sbjct: 171 LHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVH 230
Query: 792 IFKYLSTEAGRRGGS--------ALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHS 947
IFKYL+ +A R +L PS+P + S ED +P + + G DSG S
Sbjct: 231 IFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDS---MEDFYPNKNH--GPDSGIGS 285
Query: 948 VDSGSKRWSGNE-STDEFSELSFRISELAXXXXXXXXXXXDGS---ADGDPEQIDFID 1109
D+G KR S E S D+ L ++SE GS + D E DFID
Sbjct: 286 -DNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHSIGSKLDSQKDQEVYDFID 342
>ref|XP_003358823.1| PREDICTED: leucine-rich repeat and calponin homology
domain-containing protein 3 isoform 2 [Sus scrofa].
Length = 620
Score = 162 bits (409), Expect = 4e-40
Identities = 88/177 (49%), Positives = 114/177 (64%), Gaps = 16/177 (9%)
Frame = +3
Query: 630 ELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLS 809
EL +LPL+RLDFSCN+++ IPV + LRHLQ+I LD+NPLQSPPAQ+C+KGK+HIFKYL+
Sbjct: 88 ELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLN 147
Query: 810 TEAGRRGGSALGDLAPS------RPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRW 971
+A + +AP RP F C E+L+ GR Y G LDSGF+SVDSG KRW
Sbjct: 148 IQACK--------IAPDLPDYDRRPMGFGSC-HEELYSGRPY-GALDSGFNSVDSGDKRW 197
Query: 972 SGNESTDEFSELSFRISELA----------XXXXXXXXXXXDGSADGDPEQIDFIDS 1112
SGNE TDEFS+L R++E+ +G + D +QID+IDS
Sbjct: 198 SGNEPTDEFSDLPLRVAEITKEQRLRREGQYQENRSSLVVTNGGVEHDLDQIDYIDS 254
Score = 63.5 bits (153), Expect = 2e-10
Identities = 49/114 (42%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Frame = +3
Query: 99 PGSPGLPGS--RSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRF 272
PG PG PGS RS +RALEEA TG L+LS R+L+ FPRGAA ++DL+D T+A+L+
Sbjct: 38 PG-PG-PGSWSRSLDRALEEAAVTGVLSLSGRKLREFPRGAA-NHDLTDTTRAELA---- 90
Query: 273 PEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYIC 434
E+P L L N + + NL L + L N L S P IC
Sbjct: 91 -ELP--------LIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQIC 135
>ref|XP_003131023.2| PREDICTED: leucine-rich repeat and calponin homology
domain-containing protein 1 [Sus scrofa].
Length = 535
Score = 122 bits (305), Expect = 5e-28
Identities = 80/187 (42%), Positives = 105/187 (56%), Gaps = 1/187 (0%)
Frame = +3
Query: 438 LPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLS 617
LP R L+ ++ A + S G L DVS N R+LNVRRN L
Sbjct: 5 LPFRFLLCAHKPFLAWDLETSRKGDLP--DVSCNEITALPQQIGQLKSLRELNVRRNYLK 62
Query: 618 TLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIF 797
LP EL DLPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK+HIF
Sbjct: 63 VLPQELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIF 122
Query: 798 KYLSTEAGR-RGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWS 974
KYLS +A + + +L RP + + G++ DSG S D+G KR S
Sbjct: 123 KYLSIQACQIKTADSLYLHTMERPHLH-----QHVEDGKK---DSDSGVGS-DNGDKRLS 173
Query: 975 GNESTDE 995
E +DE
Sbjct: 174 ATEPSDE 180
>ref|XP_003131024.2| PREDICTED: leucine-rich repeat and calponin homology
domain-containing protein 1-like [Sus scrofa].
Length = 335
Score = 96.3 bits (238), Expect = 3e-20
Identities = 58/123 (47%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Frame = +3
Query: 630 ELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLS 809
EL DLPLV+ DFSCN+V IP+ F ++ LQV+LL++NPLQSPPAQ+C KGK+HIFKYLS
Sbjct: 146 ELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLS 205
Query: 810 TEAGR-RGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNES 986
+A + + +L RP + + G++ DSG S D+G KR S E
Sbjct: 206 IQACQIKTADSLYLHTMERPHLH-----QHVEDGKK---DSDSGVGS-DNGDKRLSATEP 256
Query: 987 TDE 995
+DE
Sbjct: 257 SDE 259
>ref|XP_003127976.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Sus
scrofa].
Length = 602
Score = 86.3 bits (212), Expect = 3e-17
Identities = 65/218 (29%), Positives = 110/218 (50%), Gaps = 3/218 (1%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L L + L P G + ++L D+ DLS NR +P + L S+ L++ N L+ L
Sbjct: 156 LYLQHNELTCIPEGFEQLFNLEDL---DLSNNRLSSIPASFSSLSSVVRLNISSNQLKSL 212
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGALPPDISALGSLRQLD 527
+ + L +L+ + N L ++PP + + L +L + NKL LP + + L++L
Sbjct: 213 PAEISGMKRLKHLDCNSNLLETIPPELASMESLELLYLRRNKLRFLP-EFPSCKLLKELH 271
Query: 528 VSSNXXXXXXXXXXXXXXX-RDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSF 701
V N L++R N+L ++PDE+ L L RLD S N +S +P S
Sbjct: 272 VGENQIEMLGAEHLKHLNSILVLDLRDNKLKSVPDEITLLQSLERLDLSNNDISSLPCSL 331
Query: 702 CRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYLSTE 815
+L HL+ + L+ NPL++ ++ KG + KYL ++
Sbjct: 332 GKL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSK 368
Score = 81.3 bits (199), Expect = 9e-16
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 3/220 (1%)
Frame = +3
Query: 144 LEEAVATGTLNLSNRRLKHFPRGAAR-SYDLSDITQADLSRNRFPEVPEAACQLVSLEGL 320
L+ A +G LNLS R L P+ R + D+ + +LS + E + L L
Sbjct: 32 LKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFS----ATERWWEQTDLTKL 87
Query: 321 SLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGALPPDI 497
+ +N L+ L+ L L ALT L++ NQL+SLP I +L L+ L VS+NKL LP +I
Sbjct: 88 IISNNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEI 147
Query: 498 SALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSCN 674
+ L +L+ L + N DL++ N+LS++P L +VRL+ S N
Sbjct: 148 TNLRNLKGLYLQHNELTCIPEGFEQLFNLEDLDLSNNRLSSIPASFSSLSSVVRLNISSN 207
Query: 675 RVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHI 794
++ +P ++ L+ + +SN L++ P ++ L +
Sbjct: 208 QLKSLPAEISGMKRLKHLDCNSNLLETIPPELASMESLEL 247
Score = 62.4 bits (150), Expect = 4e-10
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 3/216 (1%)
Frame = +3
Query: 168 TLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRC 347
TL+ S+++ P + + IT + S+N+ E+P+ ++ +
Sbjct: 403 TLDYSDKQTALIPDEVFDAVKSNVITSVNFSKNQLCEIPKRIVEMKEM------------ 450
Query: 348 LNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNKLGALPPDISALGSLRQL 524
++ +NLS N+LS + +C L L L + NN L +LP ++ +L L+ +
Sbjct: 451 ----------VSDVNLSFNKLSFISLELCMLQKLTFLDLRNNFLNSLPEEMESLVRLQTI 500
Query: 525 DVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTL-PDELGDLP-LVRLDFSCNRVSRIPVS 698
++S N + + NQ+ ++ P ++ + L+ LD N + +IP
Sbjct: 501 NLSFNRFKILPEVLYRIPTLETILISNNQVGSVDPQKMKTMENLITLDLQNNDLLQIPPE 560
Query: 699 FCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYL 806
+L+ +LLD NP + P A + +KG I +YL
Sbjct: 561 LGNCVNLRTLLLDGNPFRVPRAAILMKGTAAILEYL 596
>ref|XP_003121620.2| PREDICTED: leucine-rich repeat-containing protein 57-like [Sus
scrofa].
Length = 239
Score = 82.4 bits (202), Expect = 4e-16
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 2/213 (0%)
Frame = +3
Query: 120 GSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAAC- 296
G+ + +E A TG L +R L FP + S++ DLS N+ +P
Sbjct: 2 GNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKL--TSNLRTIDLSSNKIESLPPMIIG 59
Query: 297 QLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVSNNK 473
+ L+ LSL +N L L L +L L L+L+ N L LP QL L+ L +S N+
Sbjct: 60 KFTLLKSLSLNNNRLTVLPDELCHLKKLETLSLNNNHLRELPSTFGQLSALKTLSISGNQ 119
Query: 474 LGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLV 653
L ALPP + SLR LDV +++ +NQ+ ++PD +G+L ++
Sbjct: 120 LRALPPQLC---SLRHLDV--------------------VDLSKNQIRSIPDIVGELQVI 156
Query: 654 RLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQ 752
L+ + N++S+I V L+V+ L+ N L+
Sbjct: 157 ELNLNQNQISQISVKISCCPRLKVLRLEENCLE 189
Score = 52.8 bits (125), Expect = 4e-07
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Frame = +3
Query: 378 LTYLNLSRNQLSSLPPYICQ--LPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXX 551
L ++LS N++ SLPP I L+ L ++NN+L LP ++ L L L +++N
Sbjct: 40 LRTIDLSSNKIESLPPMIIGKFTLLKSLSLNNNRLTVLPDELCHLKKLETLSLNNN---- 95
Query: 552 XXXXXXXXXXXRDLNVRRNQLSTLPDELGDLPLVR-LDFSCNRVSRIPVSFCRLRHLQVI 728
L LP G L ++ L S N++ +P C LRHL V+
Sbjct: 96 -------------------HLRELPSTFGQLSALKTLSISGNQLRALPPQLCSLRHLDVV 136
Query: 729 LLDSNPLQSPP 761
L N ++S P
Sbjct: 137 DLSKNQIRSIP 147
>ref|XP_003130183.2| PREDICTED: leucine-rich repeat and death domain-containing protein
LOC401387 [Sus scrofa].
Length = 855
Score = 80.9 bits (198), Expect = 1e-15
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 5/210 (2%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L+L ++K P + L + L N+ P C L +L+ L L N ++ +
Sbjct: 534 LDLGKNKIKKIPPSISNMVSLHVLI---LCCNKLETFPIEVCTLENLQVLDLSENQIQNI 590
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYICQLP----LRVLIVSNNKLGALPPDISALGSLR 518
P + NL + LN+S NQ P +CQL L + ++ KL LP ++ + L+
Sbjct: 591 PPEICNLKGIQKLNISSNQFIYFPIELCQLQSLEELNISQINGRKLTRLPEELCNMIQLK 650
Query: 519 QLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSCNRVSRIPV 695
+LD+S+N L NQ+ LP L L +L+ S N ++ +P
Sbjct: 651 ELDISNNAIREMPRSIGELRSLVSLKAYNNQIRYLPPSXLSLNALQQLNLSGNNLTALPS 710
Query: 696 SFCRLRHLQVILLDSNPLQSPPAQVCLKGK 785
L L+ I D NPL PP ++C KGK
Sbjct: 711 GIYNLFSLKEINFDDNPLLRPPMEIC-KGK 739
Score = 78.6 bits (192), Expect = 6e-15
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 2/211 (0%)
Frame = +3
Query: 123 SRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQL 302
S +++ + T+NL + L+ FP+ ++ + + + F V + L
Sbjct: 126 SEESQKGFALGLDNFTVNLKAKGLQEFPKDILKTNYVKYLNLDENKIKSFKGVDPS--DL 183
Query: 303 VSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLG 479
+ LE LS+ N L L + L L LN+S NQ+S +P + QL +R L ++NN +
Sbjct: 184 LGLEILSMKENGLSSLPSEIQLLHNLKTLNVSHNQISHIPKELSQLGNIRQLFLNNNCIE 243
Query: 480 ALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVR 656
P + +LG+L L+++ N R LN+ NQL+ P L LP L+
Sbjct: 244 GSPSGLESLGNLEILNLAKNKLRHIPDTLSSLKKLRGLNLEYNQLTIFPKALCFLPKLIS 303
Query: 657 LDFSCNRVSRIPVSFCRLRHLQVILLDSNPL 749
L+ + N +S +P L++L+ +LLD N L
Sbjct: 304 LNLTGNLISSLPKEIKELKNLEKLLLDHNKL 334
Score = 74.7 bits (182), Expect = 9e-14
Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 5/213 (2%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L+LS+ +L P+ + L ++ + ++RN ++PE L ++ L N +
Sbjct: 396 LSLSDNKLTELPKNI---HKLKNLRKLHINRNNIIKIPEDISHLNNMFSLEFAGNIITDF 452
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLD 527
+ N +T + LS N++ P +C L L L + N + +P DIS L L+
Sbjct: 453 PIEIKNCRKITKVELSYNKIIYFPLGLCALESLYYLSFNGNYISEIPEDISFSKQLLHLE 512
Query: 528 VSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSCNRVSRIPVSFC 704
+ N L++ +N++ +P + ++ L L CN++ P+ C
Sbjct: 513 FNENKLLIFSEHLCSLINLEYLDLGKNKIKKIPPSISNMVSLHVLILCCNKLETFPIEVC 572
Query: 705 RLRHLQVILLDSNPLQSPPAQVC-LKG--KLHI 794
L +LQV+ L N +Q+ P ++C LKG KL+I
Sbjct: 573 TLENLQVLDLSENQIQNIPPEICNLKGIQKLNI 605
Score = 69.3 bits (168), Expect = 4e-12
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 22/223 (9%)
Frame = +3
Query: 168 TLNLSNRRLKHFPR-----GAARSY---------------DLSDITQADLSRNRFPEVPE 287
TLN+S+ ++ H P+ G R L ++ +L++N+ +P+
Sbjct: 211 TLNVSHNQISHIPKELSQLGNIRQLFLNNNCIEGSPSGLESLGNLEILNLAKNKLRHIPD 270
Query: 288 AACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLP-LRVLIVS 464
L L GL+L +N L AL L L LNL+ N +SSLP I +L L L++
Sbjct: 271 TLSSLKKLRGLNLEYNQLTIFPKALCFLPKLISLNLTGNLISSLPKEIKELKNLEKLLLD 330
Query: 465 NNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL 644
+NKL L +I L +++L ++ N R L + +N L +P+ +
Sbjct: 331 HNKLTFLAVEIFRLLRMKELQLTDNKLEVISHKIENFRELRILVLDKNLLKDVPENISHC 390
Query: 645 PLVR-LDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQV 770
++ L S N+++ +P + +L++L+ + ++ N + P +
Sbjct: 391 VMLEFLSLSDNKLTELPKNIHKLKNLRKLHINRNNIIKIPEDI 433
Score = 69.3 bits (168), Expect = 4e-12
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 5/205 (2%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
+ LS ++ +FP G L + + N E+PE L L N L
Sbjct: 465 VELSYNKIIYFPLGLCA---LESLYYLSFNGNYISEIPEDISFSKQLLHLEFNENKLLIF 521
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLD 527
+ L +L L YL+L +N++ +PP I + L VLI+ NKL P ++ L +L+ LD
Sbjct: 522 SEHLCSLINLEYLDLGKNKIKKIPPSISNMVSLHVLILCCNKLETFPIEVCTLENLQVLD 581
Query: 528 VSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFS---CNRVSRIPV 695
+S N + LN+ NQ P EL L L L+ S +++R+P
Sbjct: 582 LSENQIQNIPPEICNLKGIQKLNISSNQFIYFPIELCQLQSLEELNISQINGRKLTRLPE 641
Query: 696 SFCRLRHLQVILLDSNPLQSPPAQV 770
C + L+ + + +N ++ P +
Sbjct: 642 ELCNMIQLKELDISNNAIREMPRSI 666
Score = 57.4 bits (137), Expect = 1e-08
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Frame = +3
Query: 231 LSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQL 410
L ++ ++S N+ +P+ QL ++ L L +NC+ L +L L LNL++N+L
Sbjct: 206 LHNLKTLNVSHNQISHIPKELSQLGNIRQLFLNNNCIEGSPSGLESLGNLEILNLAKNKL 265
Query: 411 SSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXR 587
+P + L LR L + N+L P + L L L+++ N
Sbjct: 266 RHIPDTLSSLKKLRGLNLEYNQLTIFPKALCFLPKLISLNLTGNLISSLPKEIKELKNLE 325
Query: 588 DLNVRRNQLSTLPDELGD-LPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPA 764
L + N+L+ L E+ L + L + N++ I R L++++LD N L+ P
Sbjct: 326 KLLLDHNKLTFLAVEIFRLLRMKELQLTDNKLEVISHKIENFRELRILVLDKNLLKDVPE 385
Query: 765 QV 770
+
Sbjct: 386 NI 387
>ref|XP_001927723.2| PREDICTED: leucine-rich repeat-containing protein 1 [Sus scrofa].
Length = 524
Score = 79.3 bits (194), Expect = 4e-15
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 2/212 (0%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L LS+ ++ P A L ++ D+SRN PE+PE+ +L+ N L L
Sbjct: 64 LGLSDNEIQRLPPEIANFMQLVEL---DVSRNDIPEIPESISFCKALQIADFSGNPLTRL 120
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQLD 527
+ L LT L+++ L SLP I L L L + N L LP ++ L L +LD
Sbjct: 121 PESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELD 180
Query: 528 VSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDLP-LVRLDFSCNRVSRIPVSFC 704
+ +N +DL + NQLS LP E+G+L L+ LD S NR+ R+P
Sbjct: 181 LGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEIS 240
Query: 705 RLRHLQVILLDSNPLQSPPAQVCLKGKLHIFK 800
L L +++ N L+ P + KL I K
Sbjct: 241 GLTSLTDLVISQNLLEMLPDGIGKLKKLSILK 272
Score = 72.8 bits (177), Expect = 3e-13
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = +3
Query: 255 LSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYI- 431
L N+ E+PE QLV L L L N ++ L P + N L L++SRN + +P I
Sbjct: 43 LDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESIS 102
Query: 432 -CQLPLRVLIVSNNKLGALPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRN 608
C+ L++ S N L LP L +L L V+ L +R N
Sbjct: 103 FCK-ALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELREN 161
Query: 609 QLSTLPDELGDL-PLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQV 770
L+ LPD L L L LD N + +P S L HL+ + LD N L P ++
Sbjct: 162 LLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEI 216
Score = 69.3 bits (168), Expect = 4e-12
Identities = 63/211 (29%), Positives = 90/211 (42%), Gaps = 2/211 (0%)
Frame = +3
Query: 168 TLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRC 347
+L L L + P + L + + DL N +PE+ L+ L+ L L N L
Sbjct: 155 SLELRENLLTYLPDSLTQ---LRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSE 211
Query: 348 LNPALGNLTALTYLNLSRNQLSSLPPYICQL-PLRVLIVSNNKLGALPPDISALGSLRQL 524
L +GNL L L++S N+L LP I L L L++S N L LP I L L L
Sbjct: 212 LPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLEMLPDGIGKLKKLSIL 271
Query: 525 DVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRLDFSCNRVSRIPVSF 701
V N +L + N+L TLP +G L L L+ N++ +P
Sbjct: 272 KVDQNRLTQLPEAIGDCESLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEI 331
Query: 702 CRLRHLQVILLDSNPLQSPPAQVCLKGKLHI 794
L V + N L PA+V +LH+
Sbjct: 332 GGCCSLTVFCVRDNRLTRIPAEVSQATELHV 362
Score = 57.4 bits (137), Expect = 1e-08
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Frame = +3
Query: 306 SLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQ-LPLRVLIVSNNKLGA 482
SLE L L N LR L L L L LS N++ LPP I + L L VS N +
Sbjct: 37 SLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPE 96
Query: 483 LPPDISALGSLRQLDVSSNXXXXXXXXXXXXXXXRDLNVRRNQLSTLPDELGDL-PLVRL 659
+P IS +L+ D S N L+V L +LP+ +G+L L L
Sbjct: 97 IPESISFCKALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASL 156
Query: 660 DFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQV 770
+ N ++ +P S +LR L+ + L +N + + P +
Sbjct: 157 ELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESI 193
Score = 56.6 bits (135), Expect = 2e-08
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Frame = +3
Query: 171 LNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCL 350
L +S L+ P G + LS + + +NR ++PEA SL L L N L L
Sbjct: 248 LVISQNLLEMLPDGIGKLKKLSILK---VDQNRLTQLPEAIGDCESLTELVLTENRLLTL 304
Query: 351 NPALGNLTALTYLNLSRNQLSSLPPYI--CQLPLRVLIVSNNKLGALPPDISALGSLRQL 524
++G L L+ LN RN+L SLP I C L V V +N+L +P ++S L L
Sbjct: 305 PKSIGKLKKLSNLNADRNKLVSLPKEIGGC-CSLTVFCVRDNRLTRIPAEVSQATELHVL 363
Query: 525 DVSSN 539
DV+ N
Sbjct: 364 DVAGN 368
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,651,016
Number of extensions: 925210
Number of successful extensions: 6868
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 6580
Number of HSP's successfully gapped: 74
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003221
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 500 e-139
>Sscrofa_Chr03
|| Length = 144787322
Score = 500 bits (252), Expect = e-139
Identities = 252/252 (100%)
Strand = Plus / Minus
Query: 1 gtcagtcaggcagcgggagccgccaggagcggatggcggcggtggtagcggcctcactcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7906079 gtcagtcaggcagcgggagccgccaggagcggatggcggcggtggtagcggcctcactcg 7906020
Query: 61 ccgctgggggtgaggaggcggcggccacaacctccgtcccaggatctccgggtctgcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7906019 ccgctgggggtgaggaggcggcggccacaacctccgtcccaggatctccgggtctgcccg 7905960
Query: 121 ggagccgcagtgcagagcgggctctagaggaggccgtggccaccgggaccctgaacctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7905959 ggagccgcagtgcagagcgggctctagaggaggccgtggccaccgggaccctgaacctgt 7905900
Query: 181 ctaaccggcgtttgaagcacttcccccggggcgcggcccgcagctacgacctgtcagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7905899 ctaaccggcgtttgaagcacttcccccggggcgcggcccgcagctacgacctgtcagaca 7905840
Query: 241 tcacccaggctg 252
||||||||||||
Sbjct: 7905839 tcacccaggctg 7905828
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 252 gacctgtcccggaaccggttccccgaggtgccagaggcagcgtgccagctggtgtccctg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7902374 gacctgtcccggaaccggttccccgaggtgccagaggcagcgtgccagctggtgtccctg 7902315
Query: 312 gagggcctgagcctgtaccacaattgcctgagatgcctgaacccagccttggggaatctc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7902314 gagggcctgagcctgtaccacaattgcctgagatgcctgaacccagccttggggaatctc 7902255
Query: 372 acagctctcacctacctcaacctcag 397
||||||||||||||||||||||||||
Sbjct: 7902254 acagctctcacctacctcaacctcag 7902229
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 630 gagctgggggaccttcctcttgtccgcctggatttctcctgtaaccgtgtctcccgcatc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7847192 gagctgggggaccttcctcttgtccgcctggatttctcctgtaaccgtgtctcccgcatc 7847133
Query: 690 ccggtctccttctgccgcctcaggcacctgcaggtcattctgctggacagcaaccccctg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7847132 ccggtctccttctgccgcctcaggcacctgcaggtcattctgctggacagcaaccccctg 7847073
Query: 750 caaagcccacctgctcaggt 769
||||||||||||||||||||
Sbjct: 7847072 caaagcccacctgctcaggt 7847053
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 630 gagctgggggaccttcctcttgtccgcctggatttctcctgtaaccgtgtctcccgcatc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7898923 gagctgggggaccttcctcttgtccgcctggatttctcctgtaaccgtgtctcccgcatc 7898864
Query: 690 ccggtctccttctgccgcctcaggcacctgcaggtcattctgctggacagcaaccccctg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7898863 ccggtctccttctgccgcctcaggcacctgcaggtcattctgctggacagcaaccccctg 7898804
Query: 750 caaagcccacctgctcaggt 769
||||||||||||||||||||
Sbjct: 7898803 caaagcccacctgctcaggt 7898784
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 395 cagccgaaaccagctgtcatcgctgccaccctatatctgccagctgcccctgcgagtgct 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7902072 cagccgaaaccagctgtcatcgctgccaccctatatctgccagctgcccctgcgagtgct 7902013
Query: 455 cattgtcagcaacaacaaactgggagccctgcctcccgacatcagcgccctgggaagcct 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7902012 cattgtcagcaacaacaaactgggagccctgcctcccgacatcagcgccctgggaagcct 7901953
Query: 515 gcgacagcttg 525
|||||||||||
Sbjct: 7901952 gcgacagcttg 7901942
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 766 aggtctgcctgaaggggaaacttcacatcttcaagtatttgtcaacggaggctgggcggc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846914 aggtctgcctgaaggggaaacttcacatcttcaagtatttgtcaacggaggctgggcggc 7846855
Query: 826 gcggggggtctgcactgggagacctggccccttcccgccccccgagtttcagtccctg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846854 gcggggggtctgcactgggagacctggccccttcccgccccccgagtttcagtccctg 7846797
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 766 aggtctgcctgaaggggaaacttcacatcttcaagtatttgtcaacggaggctgggcggc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7898645 aggtctgcctgaaggggaaacttcacatcttcaagtatttgtcaacggaggctgggcggc 7898586
Query: 826 gcggggggtctgcactgggagacctggccccttcccgccccccgagtttcagtccctg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7898585 gcggggggtctgcactgggagacctggccccttcccgccccccgagtttcagtccctg 7898528
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 525 gatgtgagcagcaatgagttgcagtctctgccctcagagctgtgcagtctcccttccctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7901758 gatgtgagcagcaatgagttgcagtctctgccctcagagctgtgcagtctcccttccctg 7901699
Query: 585 cgggatctcaatgttcgcaggaaccagctgagcaccctgccggatg 630
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7901698 cgggatctcaatgttcgcaggaaccagctgagcaccctgccggatg 7901653
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 883 gcccagctgaggacttgtttccgggacgtcggtacgacggtgggctggactcaggcttcc 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846664 gcccagctgaggacttgtttccgggacgtcggtacgacggtgggctggactcaggcttcc 7846605
Query: 943 acagcgttgacagtggcagcaagaggtggtctggaaatgag 983
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846604 acagcgttgacagtggcagcaagaggtggtctggaaatgag 7846564
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 883 gcccagctgaggacttgtttccgggacgtcggtacgacggtgggctggactcaggcttcc 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7898395 gcccagctgaggacttgtttccgggacgtcggtacgacggtgggctggactcaggcttcc 7898336
Query: 943 acagcgttgacagtggcagcaagaggtggtctggaaatgag 983
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7898335 acagcgttgacagtggcagcaagaggtggtctggaaatgag 7898295
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 982 agtcgacggatgagttttctgagctgtcgttccggatctcggagctggcccgggagcctc 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846321 agtcgacggatgagttttctgagctgtcgttccggatctcggagctggcccgggagcctc 7846262
Query: 1042 ggggacccagggagcggagggaggatggctctg 1074
|||||||||||||||||||||||||||||||||
Sbjct: 7846261 ggggacccagggagcggagggaggatggctctg 7846229
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 1074 gccgacggagaccccgagcagattgacttcatcgacagccacgtccctggggagg 1128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846142 gccgacggagaccccgagcagattgacttcatcgacagccacgtccctggggagg 7846088
Score = 75.8 bits (38), Expect = 5e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 982 agtcgacggatgagttttctgagctgtcgttccggatc 1019
||||||||||||||||||||||||||||||||||||||
Sbjct: 7898052 agtcgacggatgagttttctgagctgtcgttccggatc 7898015
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,366,387
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 13
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)