Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003229
(1352 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015575.1| E3 ubiquitin-protein ligase RNF25 [Bos tauru... 607 e-174
Alignment gi|XP_002690831.1| PREDICTED: Gcn2-like [Bos taurus]. 62 9e-10
Alignment gi|XP_001787713.1| PREDICTED: Gcn2-like [Bos taurus]. 62 9e-10
>ref|NP_001015575.1| E3 ubiquitin-protein ligase RNF25 [Bos taurus].
Length = 458
Score = 607 bits (1565), Expect = e-174
Identities = 299/352 (84%), Positives = 308/352 (87%)
Frame = +2
Query: 77 WVLPSEVEVLESIYLDELQVVKGNSRSSPWEISITLHPATAEDQDSQYVCFTLVLQVPAQ 256
WVLPSEVEVLESIYLDELQVVKGN RSSPWEI ITLHPATAEDQDSQYVCFTLVLQVP Q
Sbjct: 14 WVLPSEVEVLESIYLDELQVVKGNGRSSPWEIYITLHPATAEDQDSQYVCFTLVLQVPTQ 73
Query: 257 YPHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHG 436
YPHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHG
Sbjct: 74 YPHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHG 133
Query: 437 QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELXXXXXXXXXXXXXXXXXXXX 616
QCVICLYGFQEKEAFTKTPCYHYF CHCLARYIQHMEHEL
Sbjct: 134 QCVICLYGFQEKEAFTKTPCYHYFRCHCLARYIQHMEHEL-QAQGREREQERQHAAPEQA 192
Query: 617 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAERKRLYQRQQERGGIID 796
VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQ ERKRLYQRQQERGGIID
Sbjct: 193 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQEERKRLYQRQQERGGIID 252
Query: 797 LEAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVSSTAQTTLSPPLPVTSQ 976
LEAERNRYFISLQQPPAPLEPESA+D SRGSH PS LAT+PS +S T LS LP+ SQ
Sbjct: 253 LEAERNRYFISLQQPPAPLEPESAIDVSRGSHQPSTLATKPSTTSATHTALSVSLPLASQ 312
Query: 977 YTCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKGGECSVLKG 1132
YTCEK PG GP+ KLGETQ+A+ +P RASRGPWRQ ERRHLKGGEC+ LKG
Sbjct: 313 YTCEKTPGAGPHLPKLGETQKAVLDPRRASRGPWRQPERRHLKGGECNTLKG 364
Score = 100 bits (248), Expect = 4e-21
Identities = 50/79 (63%), Positives = 56/79 (70%)
Frame = +1
Query: 1033 PESYARTPPGQSRPLETGRTEAPKGRGMQCPQRTRDCARWERSKGRTPASSYPRLPRGRG 1212
PES+ + G + G + P P+RTRDCA WER+K RTPASSYPRLPRGRG
Sbjct: 386 PESHNQGGKGPPQDKGPGEWQGPP------PRRTRDCAHWERAKNRTPASSYPRLPRGRG 439
Query: 1213 AYRPGTRREPVSLESEDGS 1269
AYRPG RREPVSLESEDGS
Sbjct: 440 AYRPGPRREPVSLESEDGS 458
>ref|XP_002690831.1| PREDICTED: Gcn2-like [Bos taurus].
Length = 1649
Score = 62.4 bits (150), Expect = 9e-10
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +2
Query: 92 EVEVLESIYLDELQVVKGNSRS---SPWEISITLHPATAEDQDSQYVCFTLVLQVPAQYP 262
E++ LE+IY + Q ++ ++R P EI++ L+P ++ YV L ++ P YP
Sbjct: 26 ELQALEAIYGADFQDLRPDARGRVKEPPEINLVLYPQGLTGEEV-YVKVDLRVKCPPTYP 84
Query: 263 HEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIP 430
VP+I ++N +GLS+E ++ + L VA+ G M++EL + L ++N P
Sbjct: 85 DVVPEIELKNAKGLSNESVNLLKSRLEEVAKKHCGEVMIFELAYYVQSFLCEHNKP 140
>ref|XP_001787713.1| PREDICTED: Gcn2-like [Bos taurus].
Length = 1570
Score = 62.4 bits (150), Expect = 9e-10
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +2
Query: 92 EVEVLESIYLDELQVVKGNSRS---SPWEISITLHPATAEDQDSQYVCFTLVLQVPAQYP 262
E++ LE+IY + Q ++ ++R P EI++ L+P ++ YV L ++ P YP
Sbjct: 26 ELQALEAIYGADFQDLRPDARGRVKEPPEINLVLYPQGLTGEEV-YVKVDLRVKCPPTYP 84
Query: 263 HEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIP 430
VP+I ++N +GLS+E ++ + L VA+ G M++EL + L ++N P
Sbjct: 85 DVVPEIELKNAKGLSNESVNLLKSRLEEVAKKHCGEVMIFELAYYVQSFLCEHNKP 140
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,159,294
Number of extensions: 1667252
Number of successful extensions: 9084
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8989
Number of HSP's successfully gapped: 4
Length of query: 450
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 344
Effective length of database: 14,174,046
Effective search space: 4875871824
Effective search space used: 4875871824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003229
(1352 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536071.2| PREDICTED: similar to RING finger protein 25 [C... 615 e-176
Alignment gi|XP_535431.2| PREDICTED: similar to Eukaryotic translation in... 69 1e-11
>ref|XP_536071.2| PREDICTED: similar to RING finger protein 25 [Canis familiaris].
Length = 459
Score = 615 bits (1587), Expect = e-176
Identities = 311/385 (80%), Positives = 320/385 (83%), Gaps = 5/385 (1%)
Frame = +2
Query: 77 WVLPSEVEVLESIYLDELQVVKGNSRSSPWEISITLHPATAEDQDSQYVCFTLVLQVPAQ 256
WVLPSEVEVLESIYLDELQVVKGN RSSPWEI ITLHPATAEDQ+SQYVCFTLVLQVP Q
Sbjct: 14 WVLPSEVEVLESIYLDELQVVKGNGRSSPWEIYITLHPATAEDQNSQYVCFTLVLQVPTQ 73
Query: 257 YPHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHG 436
YP+EVPQISIRNPRGLSDEQIHKISQALSHVA AGLGTAMLYELIEKGKEILTDNNIPHG
Sbjct: 74 YPNEVPQISIRNPRGLSDEQIHKISQALSHVANAGLGTAMLYELIEKGKEILTDNNIPHG 133
Query: 437 QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELXXXXXXXXXXXXXXXXXXXX 616
QCVICLY FQEKEAFTKTPCYHYFHCHCLARYIQHME EL
Sbjct: 134 QCVICLYDFQEKEAFTKTPCYHYFHCHCLARYIQHMERELQAQGQEQEQERQHAATKQKA 193
Query: 617 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAERKRLYQRQQERGGIID 796
VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQP AESLRQQ ERKRLYQRQQERGGIID
Sbjct: 194 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEERKRLYQRQQERGGIID 253
Query: 797 LEAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVSSTAQTTLSPPLPVTSQ 976
LEAERNRYFISLQQPPAP+EPESAVDASRGS PPSALA+E S SSTAQ LS PLPV SQ
Sbjct: 254 LEAERNRYFISLQQPPAPVEPESAVDASRGSQPPSALASELSTSSTAQPNLSAPLPVASQ 313
Query: 977 YTCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKGGECSVLKGLGTVLAGS 1156
YTCEKIPG GPNQQ+LGETQ+AM +PPRASRGPW+Q ERRHLKGGEC KG
Sbjct: 314 YTCEKIPGAGPNQQRLGETQKAMIDPPRASRGPWKQPERRHLKGGECHAHKGTSDTQELP 373
Query: 1157 AP----RVGHQLLPTPACPG-EGEP 1216
P + L P P G EG P
Sbjct: 374 PPEGPLKEPMDLKPEPCSQGVEGPP 398
Score = 98.6 bits (244), Expect = 1e-20
Identities = 59/126 (46%), Positives = 71/126 (56%)
Frame = +1
Query: 892 PTQCPCHRTIRLINCSNHPVTSSACDLPVHV*EDSRAWAKSAKAGRDPESYARTPPGQSR 1071
P + P R ++ C H TS +LP E K PE ++ G +
Sbjct: 346 PWKQPERRHLKGGECHAHKGTSDTQELPPP--EGPLKEPMDLK----PEPCSQGVEGPPQ 399
Query: 1072 PLETGRTEAPKGRGMQCPQRTRDCARWERSKGRTPASSYPRLPRGRGAYRPGTRREPVSL 1251
G + P P+RTRDCARWERSK RTP SSYPRLPRGRGA+RPGTRREP+S+
Sbjct: 400 EKGPGNWQGPP------PRRTRDCARWERSKARTPGSSYPRLPRGRGAFRPGTRREPLSM 453
Query: 1252 ESEDGS 1269
ESEDGS
Sbjct: 454 ESEDGS 459
>ref|XP_535431.2| PREDICTED: similar to Eukaryotic translation initiation factor
2-alpha kinase 4 (GCN2-like protein) [Canis familiaris].
Length = 1633
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Frame = +2
Query: 92 EVEVLESIYLDELQVVKGNSRSS---PWEISITLHPATAEDQDSQYVCFTLVLQVPAQYP 262
E++ LE+IY + Q ++ ++R S P EI++ L+P ++ YV L ++ P YP
Sbjct: 26 ELQALEAIYGADFQDLRPDARKSVNEPPEINLVLYPQGLTGEEV-YVQVDLRVKCPPTYP 84
Query: 263 HEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIP 430
VP+I ++N +GLS+E +H + L VA+ G M++EL + + L+++N P
Sbjct: 85 DVVPEIELKNAKGLSNESVHLLKSHLEKVAKKHCGEVMIFELADHVQSFLSEHNKP 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,463,459
Number of extensions: 1706625
Number of successful extensions: 9532
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9449
Number of HSP's successfully gapped: 3
Length of query: 450
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 344
Effective length of database: 15,340,888
Effective search space: 5277265472
Effective search space used: 5277265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003229
(1352 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071898.2| E3 ubiquitin-protein ligase RNF25 [Homo sapiens]. 591 e-169
Alignment gi|NP_001013725.2| eukaryotic translation initiation factor 2-a... 59 8e-09
>ref|NP_071898.2| E3 ubiquitin-protein ligase RNF25 [Homo sapiens].
Length = 459
Score = 591 bits (1523), Expect = e-169
Identities = 288/352 (81%), Positives = 300/352 (85%)
Frame = +2
Query: 77 WVLPSEVEVLESIYLDELQVVKGNSRSSPWEISITLHPATAEDQDSQYVCFTLVLQVPAQ 256
WVLPSEVEVLESIYLDELQV+KGN R+SPWEI ITLHPATAEDQDSQYVCFTLVLQVPA+
Sbjct: 14 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAE 73
Query: 257 YPHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHG 436
YPHEVPQISIRNPRGLSDEQIH I Q L HVA+AGLGTAMLYELIEKGKEILTDNNIPHG
Sbjct: 74 YPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILTDNNIPHG 133
Query: 437 QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELXXXXXXXXXXXXXXXXXXXX 616
QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHME EL
Sbjct: 134 QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQELKAQGQEQEQERQHATTKQKA 193
Query: 617 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAERKRLYQRQQERGGIID 796
VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQP AESLRQQ ERKRLYQRQQERGGIID
Sbjct: 194 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEERKRLYQRQQERGGIID 253
Query: 797 LEAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVSSTAQTTLSPPLPVTSQ 976
LEAERNRYFISLQQPPAP EPESAVD S+GS PPS LA E S S Q+TL PPLPV +Q
Sbjct: 254 LEAERNRYFISLQQPPAPAEPESAVDVSKGSQPPSTLAAELSTSPAVQSTLPPPLPVATQ 313
Query: 977 YTCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKGGECSVLKG 1132
+ CEKIPG NQQ+LGETQ+AM +PP+ SRGPWRQ ERRH KGGEC KG
Sbjct: 314 HICEKIPGTRSNQQRLGETQKAMLDPPKPSRGPWRQPERRHPKGGECHAPKG 365
Score = 94.7 bits (234), Expect = 2e-19
Identities = 46/79 (58%), Positives = 55/79 (69%)
Frame = +1
Query: 1033 PESYARTPPGQSRPLETGRTEAPKGRGMQCPQRTRDCARWERSKGRTPASSYPRLPRGRG 1212
PE +++ G + G + P P+RTRDC RWERSKGRTP SSYPRLPRG+G
Sbjct: 387 PEPHSQGVEGPPQEKGPGSWQGPP------PRRTRDCVRWERSKGRTPGSSYPRLPRGQG 440
Query: 1213 AYRPGTRREPVSLESEDGS 1269
AYRPGTRRE + LES+DGS
Sbjct: 441 AYRPGTRRESLGLESKDGS 459
>ref|NP_001013725.2| eukaryotic translation initiation factor 2-alpha kinase 4 [Homo
sapiens].
Length = 1649
Score = 59.3 bits (142), Expect = 8e-09
Identities = 34/116 (29%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +2
Query: 92 EVEVLESIYLDELQVVKGNSRS---SPWEISITLHPATAEDQDSQYVCFTLVLQVPAQYP 262
E++ LE+IY + Q ++ ++ P EI++ L+P ++ YV L ++ P YP
Sbjct: 26 ELQALEAIYGADFQDLRPDACGPVKEPPEINLVLYPQGLTGEEV-YVKVDLRVKCPPTYP 84
Query: 263 HEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIP 430
VP+I ++N +GLS+E ++ + L +A+ G M++EL + L+++N P
Sbjct: 85 DVVPEIELKNAKGLSNESVNLLKSRLEELAKKHCGEVMIFELAYHVQSFLSEHNKP 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,243,100
Number of extensions: 1664026
Number of successful extensions: 8902
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8779
Number of HSP's successfully gapped: 3
Length of query: 450
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 344
Effective length of database: 14,802,980
Effective search space: 5092225120
Effective search space used: 5092225120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003229
(1352 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067288.2| E3 ubiquitin-protein ligase RNF25 [Mus musculus]. 550 e-157
Alignment gi|NP_038747.2| eukaryotic translation initiation factor 2-alph... 64 4e-10
>ref|NP_067288.2| E3 ubiquitin-protein ligase RNF25 [Mus musculus].
Length = 456
Score = 550 bits (1418), Expect = e-157
Identities = 275/356 (77%), Positives = 293/356 (82%)
Frame = +2
Query: 77 WVLPSEVEVLESIYLDELQVVKGNSRSSPWEISITLHPATAEDQDSQYVCFTLVLQVPAQ 256
WVLPSEVEVLESIYLDELQV+KGN RS PWEI ITLHPATAE QDSQ+VCFTLVL++P Q
Sbjct: 14 WVLPSEVEVLESIYLDELQVMKGNGRS-PWEIFITLHPATAEVQDSQFVCFTLVLRIPVQ 72
Query: 257 YPHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHG 436
YPHEVPQISIRNPRGLSDEQIHKISQAL HVA+ GLGTAMLYELIEKGKEILTDNNIPHG
Sbjct: 73 YPHEVPQISIRNPRGLSDEQIHKISQALGHVAKEGLGTAMLYELIEKGKEILTDNNIPHG 132
Query: 437 QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELXXXXXXXXXXXXXXXXXXXX 616
QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHME EL
Sbjct: 133 QCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQEL--TTQEQEQERQHVVTKQKA 190
Query: 617 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAERKRLYQRQQERGGIID 796
VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQP AESLRQQ E K LYQRQQE+GGIID
Sbjct: 191 VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPSAESLRQQEELKLLYQRQQEKGGIID 250
Query: 797 LEAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVSSTAQTTLSPPLPVTSQ 976
LEAERNRYFISLQQPPA LEPESAVD SR PP+AL+ E S S Q+TL LP+T+Q
Sbjct: 251 LEAERNRYFISLQQPPAALEPESAVDVSREPQPPNALSAEQSTSLADQSTLPTSLPMTTQ 310
Query: 977 YTCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKGGECSVLKGLGTV 1144
YT EK G GPNQQ+ GETQ+++ +PPR RG WRQ +RRH KGGEC KG +
Sbjct: 311 YTYEKTSGAGPNQQRPGETQKSVLDPPRHGRGSWRQYDRRHPKGGECCTPKGTSEI 366
Score = 88.6 bits (218), Expect = 1e-17
Identities = 45/74 (60%), Positives = 53/74 (71%), Gaps = 5/74 (6%)
Frame = +1
Query: 1063 QSRPLETGRTEAPKGRG---MQCP--QRTRDCARWERSKGRTPASSYPRLPRGRGAYRPG 1227
++ P G T P+ +G Q P +RTRDCARWERSK RTP S YP LPRG+GAYR G
Sbjct: 383 KAEPRNKGLTGHPQEKGPGSWQGPSARRTRDCARWERSKNRTPGSCYPHLPRGQGAYRSG 442
Query: 1228 TRREPVSLESEDGS 1269
TRREP+ LESE+GS
Sbjct: 443 TRREPLGLESEEGS 456
>ref|NP_038747.2| eukaryotic translation initiation factor 2-alpha kinase 4 isoform 1
[Mus musculus].
Length = 1648
Score = 63.5 bits (153), Expect = 4e-10
Identities = 35/116 (30%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = +2
Query: 92 EVEVLESIYLDELQVVKGNSRS---SPWEISITLHPATAEDQDSQYVCFTLVLQVPAQYP 262
E++ LE+IY + Q ++ ++R P EI++ L+P ++ YV L ++ P YP
Sbjct: 26 ELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEV-YVQVELRVKCPPTYP 84
Query: 263 HEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIP 430
VP+I ++N +GLS+E ++ + L +A+ G M++EL + L+++N P
Sbjct: 85 DVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKP 140
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,513,239
Number of extensions: 1372638
Number of successful extensions: 7316
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7259
Number of HSP's successfully gapped: 3
Length of query: 450
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 345
Effective length of database: 12,463,779
Effective search space: 4300003755
Effective search space used: 4300003755
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003229
(1352 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360706.1| PREDICTED: e3 ubiquitin-protein ligase RNF25... 665 0.0
Alignment gi|XP_003133712.1| PREDICTED: e3 ubiquitin-protein ligase RNF25... 467 e-132
>ref|XP_003360706.1| PREDICTED: e3 ubiquitin-protein ligase RNF25-like [Sus scrofa].
Length = 468
Score = 665 bits (1717), Expect = 0.0
Identities = 328/351 (93%), Positives = 328/351 (93%)
Frame = +2
Query: 80 VLPSEVEVLESIYLDELQVVKGNSRSSPWEISITLHPATAEDQDSQYVCFTLVLQVPAQY 259
VLPSEVEVLESIYLDELQVVKGNSRSSPWEISITLHPATAEDQDSQYVCFTLVLQVP Y
Sbjct: 10 VLPSEVEVLESIYLDELQVVKGNSRSSPWEISITLHPATAEDQDSQYVCFTLVLQVPXXY 69
Query: 260 PHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHGQ 439
PHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLG AMLYELIEKGKEILTDNNIPHGQ
Sbjct: 70 PHEVPQISIRNPRGLSDEQIHKISQALSHVAEAGLGAAMLYELIEKGKEILTDNNIPHGQ 129
Query: 440 CVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELXXXXXXXXXXXXXXXXXXXXV 619
CVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHEL V
Sbjct: 130 CVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELQAQGREQEQQRQHAAAKQKAV 189
Query: 620 GVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAERKRLYQRQQERGGIIDL 799
GVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAERKRLYQRQQERGGIIDL
Sbjct: 190 GVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAERKRLYQRQQERGGIIDL 249
Query: 800 EAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVSSTAQTTLSPPLPVTSQY 979
EAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVSSTAQTTLSPPLPVTSQY
Sbjct: 250 EAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVSSTAQTTLSPPLPVTSQY 309
Query: 980 TCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKGGECSVLKG 1132
TCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKGGECSVLKG
Sbjct: 310 TCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKGGECSVLKG 360
Score = 105 bits (262), Expect = 6e-23
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +1
Query: 1123 PQRTRDCARWERSKGRTPASSYPRLPRGRGAYRPGTRREPVSLESEDGS 1269
P+RTRDCARWERSKGRTPASSYPRLPRGRGAYRPGTRREPVSLESEDGS
Sbjct: 406 PRRTRDCARWERSKGRTPASSYPRLPRGRGAYRPGTRREPVSLESEDGS 454
>ref|XP_003133712.1| PREDICTED: e3 ubiquitin-protein ligase RNF25-like [Sus scrofa].
Length = 342
Score = 467 bits (1202), Expect = e-132
Identities = 225/248 (90%), Positives = 228/248 (91%)
Frame = +2
Query: 389 IEKGKEILTDNNIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELXXXX 568
++KGKEILTDNNIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHEL
Sbjct: 1 MKKGKEILTDNNIPHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEHELQAQG 60
Query: 569 XXXXXXXXXXXXXXXXVGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAE 748
VGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAE
Sbjct: 61 REQEQQRQHAAAKQKAVGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPDAESLRQQAE 120
Query: 749 RKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSVS 928
RKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPS+S
Sbjct: 121 RKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPLEPESAVDASRGSHPPSALATEPSIS 180
Query: 929 STAQTTLSPPLPVTSQYTCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKG 1108
STAQTTLSPPLPVTSQYTCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKG
Sbjct: 181 STAQTTLSPPLPVTSQYTCEKIPGLGPNQQKLGETQRAMPEPPRASRGPWRQAERRHLKG 240
Query: 1109 GECSVLKG 1132
GECSVLKG
Sbjct: 241 GECSVLKG 248
Score = 105 bits (262), Expect = 6e-23
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +1
Query: 1123 PQRTRDCARWERSKGRTPASSYPRLPRGRGAYRPGTRREPVSLESEDGS 1269
P+RTRDCARWERSKGRTPASSYPRLPRGRGAYRPGTRREPVSLESEDGS
Sbjct: 294 PRRTRDCARWERSKGRTPASSYPRLPRGRGAYRPGTRREPVSLESEDGS 342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,187,827
Number of extensions: 1102413
Number of successful extensions: 5804
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5744
Number of HSP's successfully gapped: 4
Length of query: 450
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,804,438
Effective search space: 3063944424
Effective search space used: 3063944424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003229
(1352 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118457.1| Sus scrofa unplaced genomic scaffold ChrUScaf441 543 e-152
Sscrofa_Chr15 535 e-149
>gb|JH118457.1| Sus scrofa unplaced genomic scaffold ChrUScaf441
Length = 88551
Score = 543 bits (274), Expect = e-152
Identities = 288/295 (97%)
Strand = Plus / Minus
Query: 837 agcctcctgcccctttggaacctgagtcagctgtagatgcctctagaggatcccacccac 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42976 agcctcctgcccctttggaacctgagtcagctgtagatgcctctagaggatcccacccac 42917
Query: 897 ccagtgcccttgccacagaaccatccgtctcatcaactgctcaaaccaccctgtcacctc 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42916 ccagtgcccttgccacagaaccatccgtctcatcaactgctcaaaccaccctgtcacctc 42857
Query: 957 ctctgcctgtgacctcccagtacacgtgtgagaagattccagggcttgggccaaatcagc 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42856 ctctgcctgtgacctcccagtacacgtgtgagaagattccagggcttgggccaaatcagc 42797
Query: 1017 aaaagctgggcgagacccagagagctatgccagaannnnnnngggccagtcgaggcccct 1076
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 42796 aaaagctgggcgagacccagagagctatgccagaacccccccgggccagtcgaggcccct 42737
Query: 1077 ggagacaggccgaacggaggcacctaaagggaggggaatgcagtgtcctcaaagg 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42736 ggagacaggccgaacggaggcacctaaagggaggggaatgcagtgtcctcaaagg 42682
Score = 379 bits (191), Expect = e-102
Identities = 200/202 (99%), Gaps = 2/202 (0%)
Strand = Plus / Minus
Query: 1129 aggactcgggactgtgctcgctgggagcgctccaagggtcggacaccagcttcttcctac 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42539 aggactcgggactgtgctcgctgggagcgctccaagggtcggacaccagcttcttcctac 42480
Query: 1189 ccccgcctgccccggggaaggggagcctatcggcctggtactcgaagggagcccgtgagc 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42479 ccccgcctgccccggggaaggggagcctatcggcctggtactcgaagggagcccgtgagc 42420
Query: 1249 cttgaatctgaagatggttcct--agcagtacctggaggggacagggaagtgggaggggg 1306
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 42419 cttgaatctgaagatggttcctanagcagtacctggaggggacagggaagtgggaggggg 42360
Query: 1307 caataaagagatttggcctggt 1328
||||||||||||||||||||||
Sbjct: 42359 caataaagagatttggcctggt 42338
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 462 tccaggagaaggaagcctttaccaaaacaccctgttaccactacttccactgccactgcc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44213 tccaggagaaggaagcctttaccaaaacaccctgttaccactacttccactgccactgcc 44154
Query: 522 tggcccggtacatccagcacatggagcacgagctgcaggcccagggacgggaacaggaac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44153 tggcccggtacatccagcacatggagcacgagctgcaggcccagggacgggaacaggaac 44094
Query: 582 agcaacggcagcacgccgcagctaaacag 610
|||||||||||||||||||||||||||||
Sbjct: 44093 agcaacggcagcacgccgcagctaaacag 44065
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 703 ggagctgtaccaacctgatgcagagagcctgcgccagcaagcagaacgcaagaggctgta 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43346 ggagctgtaccaacctgatgcagagagcctgcgccagcaagcagaacgcaagaggctgta 43287
Query: 763 ccagagacagcaggagagagggggcatcattgaccttgaggctgagcgtaaccggtactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43286 ccagagacagcaggagagagggggcatcattgaccttgaggctgagcgtaaccggtactt 43227
Query: 823 cattagcctccagcag 838
||||||||||||||||
Sbjct: 43226 cattagcctccagcag 43211
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 150 gcagatcgtcaccgtgggagatctccatcaccctgcaccccgccactgccgaagaccagg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46496 gcagatcgtcaccgtgggagatctccatcaccctgcaccccgccactgccgaagaccagg 46437
Query: 210 attcgcagtatgtctgcttcactctggtgcttcaggttcc 249
||||||||||||||||||||||||||||||||||||||||
Sbjct: 46436 attcgcagtatgtctgcttcactctggtgcttcaggttcc 46397
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 608 cagaaggccgtgggtgtgcagtgcccagtgtgcagagagccgctcgtgtacgatctcgcc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43710 cagaaggccgtgggtgtgcagtgcccagtgtgcagagagccgctcgtgtacgatctcgcc 43651
Query: 668 tcactgaaagcagcccccgaaccccaacagcccatgg 704
|||||||||||||||||||||||||||||||||||||
Sbjct: 43650 tcactgaaagcagcccccgaaccccaacagcccatgg 43614
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 78 gggtccttccctctgaagttgaagtgttagagtcaatctacctggatgaactacaggtgg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46808 gggtccttccctctgaagttgaagtgttagagtcaatctacctggatgaactacaggtgg 46749
Query: 138 ttaaaggaaatagcag 153
||||||||||||||||
Sbjct: 46748 ttaaaggaaatagcag 46733
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 393 agaaagggaaggaaatccttacagataacaacatcccccacggccagtgcgtcatctgcc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44364 agaaagggaaggaaatccttacagataacaacatcccccacggccagtgcgtcatctgcc 44305
Query: 453 tctatggtttccagg 467
|||||||||||||||
Sbjct: 44304 tctatggtttccagg 44290
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 255 agtatccccatgaggtgccacagatctctatccgtaacccccgaggactctcagatgaac 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46219 agtatccccatgaggtgccacagatctctatccgtaacccccgaggactctcagatgaac 46160
Query: 315 agatccacaag 325
|||||||||||
Sbjct: 46159 agatccacaag 46149
Score = 131 bits (66), Expect = 1e-27
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 325 gatctcacaggcgctgagccatgtggctgaggctggactgggtacggccatgctctatga 384
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 46045 gatctcacaggcgctgagccatgtggctgaggctggactgggtgcggccatgctctatga 45986
Query: 385 gctcatcgag 394
||||||||||
Sbjct: 45985 gctcatcgag 45976
>Sscrofa_Chr15
|| Length = 157681621
Score = 535 bits (270), Expect = e-149
Identities = 287/295 (97%)
Strand = Plus / Plus
Query: 837 agcctcctgcccctttggaacctgagtcagctgtagatgcctctagaggatcccacccac 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133836568 agcctcctgcccctttggaacctgagtcagctgtagatgcctctagaggatcccacccac 133836627
Query: 897 ccagtgcccttgccacagaaccatccgtctcatcaactgctcaaaccaccctgtcacctc 956
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 133836628 ccagtgcccttgccacagaaccatccatctcatcaactgctcaaaccaccctgtcacctc 133836687
Query: 957 ctctgcctgtgacctcccagtacacgtgtgagaagattccagggcttgggccaaatcagc 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133836688 ctctgcctgtgacctcccagtacacgtgtgagaagattccagggcttgggccaaatcagc 133836747
Query: 1017 aaaagctgggcgagacccagagagctatgccagaannnnnnngggccagtcgaggcccct 1076
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 133836748 aaaagctgggcgagacccagagagctatgccagaacccccccgggccagtcgaggcccct 133836807
Query: 1077 ggagacaggccgaacggaggcacctaaagggaggggaatgcagtgtcctcaaagg 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133836808 ggagacaggccgaacggaggcacctaaagggaggggaatgcagtgtcctcaaagg 133836862
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 1129 aggactcgggactgtgctcgctgggagcgctccaagggtcggacaccagcttcttcctac 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133837005 aggactcgggactgtgctcgctgggagcgctccaagggtcggacaccagcttcttcctac 133837064
Query: 1189 ccccgcctgccccggggaaggggagcctatcggcctggtactcgaagggagcccgtgagc 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133837065 ccccgcctgccccggggaaggggagcctatcggcctggtactcgaagggagcccgtgagc 133837124
Query: 1249 cttgaatctgaagatggttcctagcagtacctggaggggacagggaagtgggagggggca 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133837125 cttgaatctgaagatggttcctagcagtacctggaggggacagggaagtgggagggggca 133837184
Query: 1309 ataaagagatttggcctggt 1328
||||||||||||||||||||
Sbjct: 133837185 ataaagagatttggcctggt 133837204
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 462 tccaggagaaggaagcctttaccaaaacaccctgttaccactacttccactgccactgcc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133835362 tccaggagaaggaagcctttaccaaaacaccctgttaccactacttccactgccactgcc 133835421
Query: 522 tggcccggtacatccagcacatggagcacgagctgcaggcccagggacgggaacaggaac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133835422 tggcccggtacatccagcacatggagcacgagctgcaggcccagggacgggaacaggaac 133835481
Query: 582 agcaacggcagcacgccgcagctaaacag 610
|||||||||||||||||||||||||||||
Sbjct: 133835482 agcaacggcagcacgccgcagctaaacag 133835510
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 703 ggagctgtaccaacctgatgcagagagcctgcgccagcaagcagaacgcaagaggctgta 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133836229 ggagctgtaccaacctgatgcagagagcctgcgccagcaagcagaacgcaagaggctgta 133836288
Query: 763 ccagagacagcaggagagagggggcatcattgaccttgaggctgagcgtaaccggtactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133836289 ccagagacagcaggagagagggggcatcattgaccttgaggctgagcgtaaccggtactt 133836348
Query: 823 cattagcctccagcag 838
||||||||||||||||
Sbjct: 133836349 cattagcctccagcag 133836364
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 608 cagaaggccgtgggtgtgcagtgcccagtgtgcagagagccgctcgtgtacgatctcgcc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133835865 cagaaggccgtgggtgtgcagtgcccagtgtgcagagagccgctcgtgtacgatctcgcc 133835924
Query: 668 tcactgaaagcagcccccgaaccccaacagcccatgg 704
|||||||||||||||||||||||||||||||||||||
Sbjct: 133835925 tcactgaaagcagcccccgaaccccaacagcccatgg 133835961
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 393 agaaagggaaggaaatccttacagataacaacatcccccacggccagtgcgtcatctgcc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133835211 agaaagggaaggaaatccttacagataacaacatcccccacggccagtgcgtcatctgcc 133835270
Query: 453 tctatggtttccagg 467
|||||||||||||||
Sbjct: 133835271 tctatggtttccagg 133835285
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,000,352
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 16
Length of query: 1352
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1331
Effective length of database: 2,808,413,156
Effective search space: 3737997910636
Effective search space used: 3737997910636
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)