Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003232
(1829 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039937.1| G-protein coupled receptor 183 [Bos taurus]. 619 e-177
Alignment gi|NP_001094754.1| lysophosphatidic acid receptor 6 [Bos taurus]. 147 3e-35
Alignment gi|NP_001095710.1| cysteinyl leukotriene receptor 2 [Bos taurus]. 143 6e-34
Alignment gi|NP_001075939.1| uracil nucleotide/cysteinyl leukotriene rece... 141 2e-33
Alignment gi|NP_001093196.1| cysteinyl leukotriene receptor 1 [Bos taurus]. 138 1e-32
Alignment gi|NP_001091574.1| lysophosphatidic acid receptor 4 [Bos taurus]. 136 5e-32
Alignment gi|NP_001033622.2| proteinase-activated receptor 3 precursor [B... 134 4e-31
Alignment gi|XP_002700091.1| PREDICTED: pyrimidinergic receptor P2Y4-like... 126 6e-29
Alignment gi|XP_592537.1| PREDICTED: pyrimidinergic receptor P2Y4 [Bos ta... 126 6e-29
Alignment gi|NP_001192380.1| G-protein coupled receptor 87 [Bos taurus]. 126 7e-29
>ref|NP_001039937.1| G-protein coupled receptor 183 [Bos taurus].
Length = 360
Score = 619 bits (1596), Expect = e-177
Identities = 304/359 (84%), Positives = 311/359 (86%)
Frame = +2
Query: 77 DIKMDNFTTPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKK 256
DIKMDNFTTPS A ESDCDLYAHH TARILMPLHYSIVF QNRKK
Sbjct: 2 DIKMDNFTTPSAASLESDCDLYAHHHTARILMPLHYSIVFIIGLVGNLLALIVIIQNRKK 61
Query: 257 INSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFM 436
INSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIG+ALCRITALVFYINTYAGVNFM
Sbjct: 62 INSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGDALCRITALVFYINTYAGVNFM 121
Query: 437 TCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCM 616
TCLSIDRFFAVVHPLRYNKIKRIEHAKCICI VWILVF QTLPLLI PMSKQEA+RTTCM
Sbjct: 122 TCLSIDRFFAVVHPLRYNKIKRIEHAKCICIFVWILVFGQTLPLLINPMSKQEAERTTCM 181
Query: 617 EYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKA 796
EYPNFEET+SLPWILLGACFIGYVLPL+IILICYSQICCKLFKTAKQNPLTEKSGVNKKA
Sbjct: 182 EYPNFEETKSLPWILLGACFIGYVLPLVIILICYSQICCKLFKTAKQNPLTEKSGVNKKA 241
Query: 797 LNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCC 976
LNT CFTPYHVAIIQHMIKKL P LLECS+RHSFQI+LH TVCLMNFNCC
Sbjct: 242 LNTIIFIIVVFVVCFTPYHVAIIQHMIKKLRLPGLLECSQRHSFQISLHFTVCLMNFNCC 301
Query: 977 MDPFIYFFACKGYKRKVMKMLKRQXXXXXXXXXXXXPEENSREMTETQMMIHSKALNGK 1153
MDPFIYFFACKGYKRKVMKMLKRQ PEENSREMTETQMMIHSK+LNGK
Sbjct: 302 MDPFIYFFACKGYKRKVMKMLKRQVSVSISSAVRSAPEENSREMTETQMMIHSKSLNGK 360
>ref|NP_001094754.1| lysophosphatidic acid receptor 6 [Bos taurus].
Length = 341
Score = 147 bits (371), Expect = 3e-35
Identities = 77/248 (31%), Positives = 124/248 (50%), Gaps = 1/248 (0%)
Frame = +2
Query: 260 NSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMT 439
N TT Y NL +SD+LF LP RI Y+A +W G+ LC+I+ + FY N Y + F+T
Sbjct: 50 NETTTYMINLAMSDLLFVFTLPFRIFYFATR-NWPFGDLLCKISVMSFYTNMYGSILFLT 108
Query: 440 CLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCME 619
C+S DRF A+V+P + ++ +AK +CI VW+ V + P + P T
Sbjct: 109 CISADRFLAIVYPFKSKTLRTKRNAKIVCIAVWLTVMGGSAPAVFVPSPGSNTSATCFEN 168
Query: 620 YPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK-KA 796
+P L I++ +G+ +PL++ + C S + +T + +S +NK K
Sbjct: 169 FPAATWKTFLSRIVIFIEIVGFFIPLILNVTCSSMV----LRTLNKPVTLSRSKINKTKV 224
Query: 797 LNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCC 976
L CF PY++ +I + + + + CS + + IT+C+ NCC
Sbjct: 225 LRMIFVHLVIFCFCFVPYNINLILYSLMRTQ--TFVNCSAAIAVRTTYPITLCIAVLNCC 282
Query: 977 MDPFIYFF 1000
DP IY+F
Sbjct: 283 FDPIIYYF 290
>ref|NP_001095710.1| cysteinyl leukotriene receptor 2 [Bos taurus].
Length = 367
Score = 143 bits (360), Expect = 6e-34
Identities = 93/321 (28%), Positives = 144/321 (44%), Gaps = 8/321 (2%)
Frame = +2
Query: 107 SQAPQESDCDLYAHH--------DTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKIN 262
S + E++ HH D R P+ Y ++F Q +K
Sbjct: 13 SASEMETNSTFSDHHSNRNCTAEDFKREFYPIVYLVIFIWGALGNGFSIYVFVQPYRKST 72
Query: 263 STTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTC 442
S ++ NL SD+LFT LP R+ YY G +W G+ CRI + Y+N Y+ + F+T
Sbjct: 73 SVNIFMLNLATSDLLFTATLPFRVDYYLRGSNWIFGDLSCRIMSYSMYVNMYSSIYFLTV 132
Query: 443 LSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEY 622
LS+ RF A VHP R + +A +C +WI + A + LL S+ + T C+E
Sbjct: 133 LSVVRFLATVHPFRLLHATSVRNAWIVCGIIWIFIMASSTTLL-NNGSELKGNVTLCLEL 191
Query: 623 PNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALN 802
N + L + A +G++LP + ICY I L K + P ++KAL
Sbjct: 192 -NRNKAPKLKTMNYIALVVGFLLPFCTLSICYMLIIRALLKA--EVPELGLRLSHRKALT 248
Query: 803 TXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMD 982
T CF PYH+ ++ LH R S A+ IT+ L N C +
Sbjct: 249 TIIIALVIFLLCFLPYHI------LRTLHLLQWTADICRDSLHKAVAITLALAAANSCFN 302
Query: 983 PFIYFFACKGYKRKVMKMLKR 1045
P +Y+FA + +K ++ L++
Sbjct: 303 PLLYYFAGENFKDRLKSALRK 323
>ref|NP_001075939.1| uracil nucleotide/cysteinyl leukotriene receptor [Bos taurus].
Length = 339
Score = 141 bits (355), Expect = 2e-33
Identities = 72/266 (27%), Positives = 132/266 (49%)
Frame = +2
Query: 242 QNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYA 421
++ K ++ +L ++D+ LPTR+ Y+ G W GE CR+T +FY+N YA
Sbjct: 58 RDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGSHWPFGEIPCRLTGFLFYLNMYA 117
Query: 422 GVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAK 601
+ F+TC+S DRF A+VHP++ K++R HA C +W++V PLL+ P + +
Sbjct: 118 SIYFLTCISADRFLAIVHPVKSLKLRRPLHAHLACAFLWVVVAVAMAPLLVSPQTVRTNN 177
Query: 602 RTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSG 781
C++ + +Q L + + + P + + CY I ++ +Q P E+
Sbjct: 178 TVVCLQLYREKASQH----ALASLAVAFTFPFVTTVTCYLLI----IRSLRQGPRVERR- 228
Query: 782 VNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLM 961
+ KA+ CF PYHV ++++ + + C+ + + + IT CL
Sbjct: 229 LKNKAVRMIAAVLAIFLICFVPYHVHRSVYVLR--YRGHRTSCAAQRALALGNRITSCLT 286
Query: 962 NFNCCMDPFIYFFACKGYKRKVMKML 1039
+ N +DP +YFF + ++ + +L
Sbjct: 287 SLNGALDPVMYFFVAEKFRDALCSLL 312
>ref|NP_001093196.1| cysteinyl leukotriene receptor 1 [Bos taurus].
Length = 340
Score = 138 bits (348), Expect = 1e-32
Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 5/262 (1%)
Frame = +2
Query: 272 LYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSI 451
+Y NL ++D+L LP R+ YY W G+ LCR++ Y+N Y + FMT +S
Sbjct: 63 VYMINLAVADLLCVCTLPLRVVYYVHKGIWLFGDFLCRLSTYALYVNLYCSIFFMTAMSF 122
Query: 452 DRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNF 631
R A+V P++ + + A+ +C+ +WI V + P L+ K T C E P
Sbjct: 123 FRCIAIVFPVQNINLVTQKKARFVCVGIWIFVILTSSPFLMSKSYKDAKNNTKCFEPP-- 180
Query: 632 EETQSLPWILL---GACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALN 802
++ Q+ ++L+ + F G+++P +II++CY+ I L K + + L+ + KKA+
Sbjct: 181 QDNQAKYYVLVLHYVSLFFGFIIPFIIIIVCYTMIILTLLKKSMKKNLSSR----KKAIG 236
Query: 803 TXXXXXXXXXXCFTPYHVAIIQHMIKKLHF--PNLLECSERHSFQIALHITVCLMNFNCC 976
F PYH+ H LHF C Q ++ IT+ L NCC
Sbjct: 237 MIIVVTAAFLISFMPYHIQRTIH----LHFLHNETKPCDSVLRMQKSVVITLSLAASNCC 292
Query: 977 MDPFIYFFACKGYKRKVMKMLK 1042
DP +YFF+ ++R++ K
Sbjct: 293 FDPLLYFFSGGNFRRRLSTFRK 314
>ref|NP_001091574.1| lysophosphatidic acid receptor 4 [Bos taurus].
Length = 370
Score = 136 bits (343), Expect = 5e-32
Identities = 80/282 (28%), Positives = 131/282 (46%), Gaps = 2/282 (0%)
Frame = +2
Query: 182 YSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDW 361
YS+VF K + T ++ TNL +SD+LF LP +I +Y W
Sbjct: 46 YSVVFILGLITNSASLFVFCFRMKMRSETAIFITNLALSDLLFVCTLPFKI-FYNFNRHW 104
Query: 362 RIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWI 541
G+ LC+I+ F N Y + F+TC+S+DRF A+V+P R I+ ++ +C VWI
Sbjct: 105 PFGDTLCKISGTAFLTNIYGSMLFLTCISVDRFLAIVYPFRSRTIRTRRNSAIVCAGVWI 164
Query: 542 LVFAQTLPLLIKPMSKQEAKRTTCME-YPNFEETQSLPWILLGACFIGYVLPLLIILICY 718
LV + + + + TTC E + L I + +G+++PL++ + C
Sbjct: 165 LVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEVVGFIIPLILNVSCS 224
Query: 719 SQICCKLFKTAKQNPLTEKSGVN-KKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFP 895
S + KT ++ + G N KK L CF PY+ + + + +
Sbjct: 225 SVV----LKTLRKPATLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYAL--VRSQ 278
Query: 896 NLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKR 1021
+ C +I IT+CL NCC DPFIY+F + +++
Sbjct: 279 AITNCLLERFAKIMYPITLCLATLNCCFDPFIYYFTLESFQK 320
>ref|NP_001033622.2| proteinase-activated receptor 3 precursor [Bos taurus].
Length = 377
Score = 134 bits (336), Expect = 4e-31
Identities = 89/316 (28%), Positives = 142/316 (44%), Gaps = 12/316 (3%)
Frame = +2
Query: 98 TTPSQAPQESDCDLYAHHDT--------ARILMPLHYSIVFXXXXXXXXXXXXXXXQNRK 253
T + P+E D +L+ ++ T + L+P Y +VF + R
Sbjct: 65 TVKIKCPEELDSNLHVNNATMGYLSSPLSTKLIPAIYILVFAVGMPANAVTLWMLFRTRT 124
Query: 254 KINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNF 433
T++ TNL I+D LF LP RIAY+ G +W GE +CR T ++FY N Y +
Sbjct: 125 I--RMTIFYTNLAIADFLFCVTLPFRIAYHLNGNNWVFGEVMCRATTVIFYGNMYCSILL 182
Query: 434 MTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKR--T 607
+ C+SI+R+ A+VHP Y + + +A C VW VF LP I ++ T
Sbjct: 183 LACISINRYLAIVHPFTYRGLPKRTYALLTCGLVWTTVFLYMLPFFILKQEYYLVQQDIT 242
Query: 608 TCMEYPNFEETQS--LPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSG 781
TC + N E+ S + + F G+++P L+I+ CY+ I L ++ K+
Sbjct: 243 TCHDVHNTCESSSPFQLYYFISLAFFGFLIPFLVIIYCYTAIIWTLNAKDRRWLWYIKAS 302
Query: 782 VNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLM 961
+ + T CF P ++ +I H + S + I +CL
Sbjct: 303 LLTFVIFT---------ICFAPSNIILIIHHANYYY-------SNTDALYFVYLIALCLG 346
Query: 962 NFNCCMDPFIYFFACK 1009
+ N C+DPF+YF K
Sbjct: 347 SLNSCLDPFLYFLMSK 362
>ref|XP_002700091.1| PREDICTED: pyrimidinergic receptor P2Y4-like [Bos taurus].
Length = 365
Score = 126 bits (317), Expect = 6e-29
Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 1/314 (0%)
Frame = +2
Query: 104 PSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYST 283
P + E DC + + IL+P+ Y++VF + ++T Y
Sbjct: 18 PDNSEMELDCQF--NEEFKFILLPVTYAVVFLLGLGLNTLTIWLFLFRLRPWDATATYMF 75
Query: 284 NLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFF 463
+L +SD L+ +LPT + YYA W G LC+ +FY N Y + F+TC+S+ R+
Sbjct: 76 HLALSDTLYVLSLPTLVYYYAARNHWPFGTGLCKFIRFLFYWNLYCSILFLTCISVHRYL 135
Query: 464 AVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQ 643
+ HPLR + A +C+ VW++V +P L + + C + EE
Sbjct: 136 GICHPLRALRWGCPRLAGLLCLAVWLVVAGCLVPNLFFVTTSPKGDTILCHDTTRPEEFD 195
Query: 644 SLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXX 823
+ + +P L+ L+CY + +L++ P +S ++L+T
Sbjct: 196 HYVHFSSAIMGLLFGVPCLVTLVCYGLMAQRLYRPL---PGATQSSSRLRSLHTIAVVLT 252
Query: 824 XXXXCFTPYHVA-IIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFF 1000
CF P+H+ I +M + L +C + + +T L + N C+DP +Y
Sbjct: 253 VFAVCFVPFHITRTIYYMARLLE----ADCRVLNIVNLVYKVTRPLASANSCLDPVLYLL 308
Query: 1001 ACKGYKRKVMKMLK 1042
+ Y+R++ ++ +
Sbjct: 309 TGEKYRRQLQQLCR 322
>ref|XP_592537.1| PREDICTED: pyrimidinergic receptor P2Y4 [Bos taurus].
Length = 365
Score = 126 bits (317), Expect = 6e-29
Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 1/314 (0%)
Frame = +2
Query: 104 PSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYST 283
P + E DC + + IL+P+ Y++VF + ++T Y
Sbjct: 18 PDNSEMELDCQF--NEEFKFILLPVTYAVVFLLGLGLNTLTIWLFLFRLRPWDATATYMF 75
Query: 284 NLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFF 463
+L +SD L+ +LPT + YYA W G LC+ +FY N Y + F+TC+S+ R+
Sbjct: 76 HLALSDTLYVLSLPTLVYYYAARNHWPFGTGLCKFIRFLFYWNLYCSILFLTCISVHRYL 135
Query: 464 AVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQ 643
+ HPLR + A +C+ VW++V +P L + + C + EE
Sbjct: 136 GICHPLRALRWGCPRLAGLLCLAVWLVVAGCLVPNLFFVTTSPKGDTILCHDTTRPEEFD 195
Query: 644 SLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXX 823
+ + +P L+ L+CY + +L++ P +S ++L+T
Sbjct: 196 HYVHFSSAIMGLLFGVPCLVTLVCYGLMAQRLYRPL---PGATQSSSRLRSLHTIAVVLT 252
Query: 824 XXXXCFTPYHVA-IIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFF 1000
CF P+H+ I +M + L +C + + +T L + N C+DP +Y
Sbjct: 253 VFAVCFVPFHITRTIYYMARLLE----ADCRVLNIVNLVYKVTRPLASANSCLDPVLYLL 308
Query: 1001 ACKGYKRKVMKMLK 1042
+ Y+R++ ++ +
Sbjct: 309 TGEKYRRQLQQLCR 322
>ref|NP_001192380.1| G-protein coupled receptor 87 [Bos taurus].
Length = 358
Score = 126 bits (316), Expect = 7e-29
Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 4/315 (1%)
Frame = +2
Query: 101 TPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYS 280
TPS S + H++ I++P Y ++F R K S Y
Sbjct: 22 TPSNTSDGSGKNTTVHNEFDTIVLPGLYLVIFVASILLNGLAVWIFFHIRNK-TSFIFYL 80
Query: 281 TNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRF 460
N+V++D++ T P RI + A W LCR ++++FY N Y + F+ +SIDR+
Sbjct: 81 KNIVVADLIMTLTFPFRIVHDAGLGPWYFKFILCRYSSVLFYANMYTSIVFLGLISIDRY 140
Query: 461 FAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEET 640
VV P +++ I K + +CVW+L+ +LP +I ++ + R E +
Sbjct: 141 LKVVKPFGDSRMYSITFTKVLSVCVWVLMAVLSLPNII--LTNVQPTRENIHECTKLKSP 198
Query: 641 QSLPW----ILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTX 808
+ W + +C +V+ L+I++ CY I + K+++Q +S +K +
Sbjct: 199 LGVKWHNAITYVNSCL--FVVVLVILIGCYIAISRYIHKSSRQ--FISQSSRKRKHNQSI 254
Query: 809 XXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPF 988
CF PYH+ I H LL+ S +T+ L N C+DP
Sbjct: 255 RVVVAVFFTCFLPYHLCRIPFTFS--HLDRLLDESAHKILYYCKEMTLFLSACNVCLDPI 312
Query: 989 IYFFACKGYKRKVMK 1033
IYFF C+ + R++ K
Sbjct: 313 IYFFMCRSFSRRLFK 327
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,920,685
Number of extensions: 1603792
Number of successful extensions: 5399
Number of sequences better than 1.0e-05: 201
Number of HSP's gapped: 5069
Number of HSP's successfully gapped: 202
Length of query: 609
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 501
Effective length of database: 14,107,870
Effective search space: 7068042870
Effective search space used: 7068042870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003232
(1829 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542563.2| PREDICTED: similar to Cysteinyl leukotriene rec... 150 4e-36
Alignment gi|XP_549098.2| PREDICTED: similar to G protein-coupled recepto... 137 3e-32
Alignment gi|XP_546059.2| PREDICTED: similar to Proteinase activated rece... 131 2e-30
Alignment gi|XP_542321.2| PREDICTED: similar to P2Y purinoceptor 2 (P2Y2)... 127 3e-29
Alignment gi|XP_850636.1| PREDICTED: similar to pyrimidinergic receptor P... 127 5e-29
Alignment gi|NP_001003365.1| P2Y purinoceptor 12 [Canis lupus familiaris]. 122 1e-27
Alignment gi|XP_548831.2| PREDICTED: similar to G-protein coupled puriner... 122 1e-27
Alignment gi|XP_849866.1| PREDICTED: similar to Proteinase activated rece... 122 1e-27
Alignment gi|XP_542839.2| PREDICTED: similar to Probable G-protein couple... 121 2e-27
Alignment gi|XP_543851.1| PREDICTED: similar to Probable G-protein couple... 121 3e-27
>ref|XP_542563.2| PREDICTED: similar to Cysteinyl leukotriene receptor 2 (CysLTR2)
(HG57) (HPN321) (hGPCR21) [Canis familiaris].
Length = 357
Score = 150 bits (379), Expect = 4e-36
Identities = 90/291 (30%), Positives = 145/291 (49%)
Frame = +2
Query: 173 PLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALG 352
P+ Y ++F Q+ KK S ++ NL ISD LFT+ LP R YY
Sbjct: 55 PIVYLVIFVWGTLGNGFSIYVFLQSYKKSTSVNVFMLNLAISDFLFTSTLPFRADYYIRS 114
Query: 353 FDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICIC 532
+W G+ CRI + Y+N Y+ + F+T LSI RF A VHP R + I+ A +C
Sbjct: 115 SNWIFGDLACRIMSYSMYVNMYSSIYFLTVLSIVRFLATVHPFRLLHVTSIKSAWILCGI 174
Query: 533 VWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILI 712
+WIL+ A ++ +L+K S+Q+ C+E N + L + A +G++LP ++ I
Sbjct: 175 IWILIMASSV-MLLKNGSEQKGSAVLCLEL-NINKIVKLKTMNYIALVMGFLLPFCMLSI 232
Query: 713 CYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF 892
CY I L K + P + S +KKAL T CF PYH+ ++ LH
Sbjct: 233 CYLLIIRALLKV--EVPESGLSVSHKKALITVIIALIIFLLCFLPYHI------LRTLHL 284
Query: 893 PNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKMLKR 1045
+ + A+ +T+ L N C++P +Y+FA + +K ++ +L++
Sbjct: 285 MEWKVNTCKEDLHKAVVVTLALAAANTCLNPLLYYFAGENFKDRLRLILRK 335
>ref|XP_549098.2| PREDICTED: similar to G protein-coupled receptor 23 [Canis
familiaris].
Length = 370
Score = 137 bits (346), Expect = 3e-32
Identities = 81/281 (28%), Positives = 131/281 (46%), Gaps = 1/281 (0%)
Frame = +2
Query: 182 YSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDW 361
YS+VF KK + T ++ TNL +SD+LF LP +I +Y W
Sbjct: 46 YSVVFILGLITNSASLFVFCFRMKKRSETAIFITNLALSDLLFVCTLPFKI-FYNFNRHW 104
Query: 362 RIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWI 541
G+ LC+I+ F N Y + F+TC+S+DRF A+V+P R I+ ++ +C VWI
Sbjct: 105 PFGDTLCKISGTAFLTNIYGSMLFLTCISVDRFLAIVYPFRSRTIRTRRNSAIVCAGVWI 164
Query: 542 LVFAQTLPLLIKPMSKQEAKRTTCME-YPNFEETQSLPWILLGACFIGYVLPLLIILICY 718
LV + + + + TTC E + L I + +G+++PL++ + C
Sbjct: 165 LVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEVVGFIIPLILNVSCS 224
Query: 719 SQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPN 898
S + L K A L++ KK L CF PY+ + + + +
Sbjct: 225 SVVLRTLRKPA---TLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYAL--VRSQA 279
Query: 899 LLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKR 1021
+ C +I IT+CL NCC DPFIY+F + +++
Sbjct: 280 ITNCLLERFAKIMYPITLCLATLNCCFDPFIYYFTLESFQK 320
>ref|XP_546059.2| PREDICTED: similar to Proteinase activated receptor 1 precursor
(PAR-1) (Thrombin receptor) (Coagulation factor II
receptor) [Canis familiaris].
Length = 464
Score = 131 bits (329), Expect = 2e-30
Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 5/249 (2%)
Frame = +2
Query: 272 LYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSI 451
+Y +L ++D+LF + LP +I+YY G DW+ G LCR FY N YA + MT +S+
Sbjct: 178 VYMLHLAVADVLFASVLPFKISYYFSGSDWKFGSELCRFVTAAFYCNMYASIMLMTVISV 237
Query: 452 DRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQ--EAKRTTCMEYP 625
DRF AVV+P++ + + A C+ +W + A +PLL+K + Q TTC +
Sbjct: 238 DRFLAVVYPIQSLSWRTLGRASFTCLAIWAMAIAGVVPLLLKEQTTQVPGLNITTCHDVL 297
Query: 626 N---FEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKA 796
N E + + A F + +PL+I ICY I L + N ++KS +A
Sbjct: 298 NETLLEGYYAYYFSSFSAVF--FFVPLIISTICYVSIIRCLSSSTVAN-RSKKS----RA 350
Query: 797 LNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCC 976
L CF P +V +I LH+ L + S + A + VC+ + +CC
Sbjct: 351 LFLSLAVFCIFIICFGPTNVLLI------LHYSFLSQDSVTEAAYFAYLLCVCVSSISCC 404
Query: 977 MDPFIYFFA 1003
+DP IY++A
Sbjct: 405 LDPLIYYYA 413
>ref|XP_542321.2| PREDICTED: similar to P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1)
(P2U1) (ATP receptor) (Purinergic receptor) [Canis
familiaris].
Length = 377
Score = 127 bits (320), Expect = 3e-29
Identities = 81/294 (27%), Positives = 132/294 (44%), Gaps = 8/294 (2%)
Frame = +2
Query: 146 HHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALP 325
+ D +L+P+ Y +V K N++T Y +L +SD L+ +LP
Sbjct: 28 NEDFKYVLLPVSYGVVCVLGLCLNAVALYIFLCRLKTWNASTTYMFHLAVSDALYAASLP 87
Query: 326 TRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRI 505
+ YY+ G W LC++ +FY N Y + F+TC+S+ R V+ PLR + R
Sbjct: 88 LLVYYYSRGDHWPFSMVLCKLVRFLFYTNLYCSILFLTCISVHRCLGVLRPLRSLRWGRA 147
Query: 506 EHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPN---FEETQSLPWILLGACF 676
+A+ + VW+LV A P+L + R TC + F + + ++LG F
Sbjct: 148 RYARRVAAAVWVLVLACQSPVLYFVTTSVRGSRITCHDTSAPELFGQFVAYSSVMLGLLF 207
Query: 677 IGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSG----VNKKALNTXXXXXXXXXXCFT 844
P +IL+CY+ + +L K P SG +K++ T CF
Sbjct: 208 ---AAPFAVILVCYALMARRLLK-----PAYGASGGLPRAKRKSVRTIAVVLAVFALCFL 259
Query: 845 PYHVA-IIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFA 1003
P+HV + + + L L C ++ +A IT L + N C+DP +YF A
Sbjct: 260 PFHVTRTLYYSFRSLD----LSCHALNAVNVAYKITRPLASANSCLDPVLYFLA 309
>ref|XP_850636.1| PREDICTED: similar to pyrimidinergic receptor P2Y, G-protein coupled,
4-like [Canis familiaris].
Length = 330
Score = 127 bits (318), Expect = 5e-29
Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 4/302 (1%)
Frame = +2
Query: 152 DTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTR 331
D +I + L YSI+ + K+ + T+Y NL+++D+L+ LP
Sbjct: 20 DYKQIYLSLTYSIILMLGMPLNGMVLWLSWRQTKRWSCATIYLVNLMVADLLYVLTLPFL 79
Query: 332 IAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEH 511
I Y+LG W GE LCR+ +FY N Y + +TC+S+ RF V HPLR + H
Sbjct: 80 ITTYSLGDRWPFGELLCRLVRFLFYTNLYGSILLLTCISVHRFLGVCHPLRSLPYRTRRH 139
Query: 512 AKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEY---PNFEETQSLPWILLGACFIG 682
A W LV Q LP L ++ + C + NF++ + +L G
Sbjct: 140 ALLGTATTWALVVLQLLPTLFFSHTEYIDGQMICYDMTGPENFDQFFAYGVVL---TLSG 196
Query: 683 YVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK-KALNTXXXXXXXXXXCFTPYHVA 859
+V P L+IL+CYS + L K + L + V + K++ T CF P+H+
Sbjct: 197 FVFPSLVILVCYSLMVRSLIKPGE--ALMKTGNVTRAKSIRTILLVCGLFTLCFVPFHIT 254
Query: 860 IIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKML 1039
+++ L F +C +A I L++ + C++P +YF + ++ + L
Sbjct: 255 RSFYLM--LRFLPSQDCQLLIVVSLAYKIWRPLVSMSSCLNPILYFLLVGNNRVRLFQEL 312
Query: 1040 KR 1045
++
Sbjct: 313 RQ 314
>ref|NP_001003365.1| P2Y purinoceptor 12 [Canis lupus familiaris].
Length = 339
Score = 122 bits (306), Expect = 1e-27
Identities = 86/322 (26%), Positives = 147/322 (45%), Gaps = 1/322 (0%)
Frame = +2
Query: 86 MDNFTTPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINS 265
MDN T S A S C + ++L PL Y+++F Q R K N
Sbjct: 1 MDNLT--SVAGNGSLCT--RDYKITQVLFPLLYTVLFFVGLITNSLAMRIFFQIRSKSNF 56
Query: 266 TTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCL 445
++ N VISD+L P +I A + +C++T++VFY Y ++F+ +
Sbjct: 57 I-IFLKNTVISDLLMILTFPFKILSDAKLGTGPLRTFVCQVTSVVFYFTMYISISFLGLI 115
Query: 446 SIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYP 625
+IDR+ P + + + AK + + +W +F +LP +I + K +
Sbjct: 116 TIDRYQKTTRPFKTSSPNNLLGAKILSVVIWAFMFLLSLPNMILTNRRPRDKNVKKCSFL 175
Query: 626 NFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNT 805
E I+ C + + + LI+++CY+ I +L+++ + K V KK +N
Sbjct: 176 KSEFGLVWHEIVNYICQVIFWINFLIVIVCYTLITKELYRSYVRTRGVGK--VPKKKVNI 233
Query: 806 XXXXXXXXXX-CFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMD 982
CF P+H A I + + + ++ +CS ++ T+ L + N C+D
Sbjct: 234 KVFIIIAVFFICFVPFHFARIPYTLSQTR--DVFDCSAENTLFYVKESTLWLTSLNACLD 291
Query: 983 PFIYFFACKGYKRKVMKMLKRQ 1048
PFIYFF CK +K +M MLK Q
Sbjct: 292 PFIYFFLCKSFKNSLMNMLKCQ 313
>ref|XP_548831.2| PREDICTED: similar to G-protein coupled purinergic receptor P2Y8
[Canis familiaris].
Length = 670
Score = 122 bits (306), Expect = 1e-27
Identities = 71/300 (23%), Positives = 139/300 (46%), Gaps = 8/300 (2%)
Frame = +2
Query: 164 ILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYY 343
+ +P+ YS+V ++ + + ++ NL ++D++ + LP +I Y+
Sbjct: 335 VALPVVYSLVAVVSIPGNLFSLWVLCRHIGPKSPSVVFMINLSVTDLMLASVLPFQIYYH 394
Query: 344 ALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCI 523
G W GE LC + +VFY N Y+ + MTC+S++RF VV+PL +R +A
Sbjct: 395 RNGNHWVFGEVLCNVVTVVFYANMYSSILTMTCISVERFLGVVYPLASAPWRRRRYAVAA 454
Query: 524 CICVWILVFAQTLPLLIKPM--SKQEAKRTTCMEYPNFEETQSLPWILLGACF------I 679
C W+L+ PL + + +E TC + ++ LP + + A F +
Sbjct: 455 CAAAWLLLLVALSPLARTDLTYAVEELGIVTCFD---VLKSTMLPSVAMWAIFLFTLFIV 511
Query: 680 GYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVA 859
+ +P ++ + CY+ L + + + G ++A++ CF P +
Sbjct: 512 LFFIPFVVTVACYTATILTLLRASD----PQGRGQRRRAVSLAFVVLLAFVTCFAPNNFV 567
Query: 860 IIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKML 1039
++ HM+ +L S+ +T+CL N C+DPF+Y+FA + ++ ++ + L
Sbjct: 568 LLVHMVSRLFL--------GRSYYHVYKLTLCLSCVNNCLDPFVYYFASREFQLRLRRYL 619
>ref|XP_849866.1| PREDICTED: similar to Proteinase activated receptor 3 precursor
(PAR-3) (Thrombin receptor-like 2) (Coagulation factor II
receptor-like 2) [Canis familiaris].
Length = 379
Score = 122 bits (305), Expect = 1e-27
Identities = 91/318 (28%), Positives = 141/318 (44%), Gaps = 14/318 (4%)
Frame = +2
Query: 98 TTPSQAPQESDCDLYAHHDT--------ARILMPLHYSIVFXXXXXXXXXXXXXXXQNRK 253
T + P+ES +L ++ T + L+P Y +VF +
Sbjct: 66 TIKFKCPEESVSNLQVNNATMGYLRSSLSTKLIPAIYILVFVVGVPANVVTLWRLFFRTR 125
Query: 254 KINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNF 433
I T Y TNL I+D LF LP +IAY+ G +W GE +CR T ++FY N Y +
Sbjct: 126 SICMTIFY-TNLAIADFLFCVTLPFKIAYHLNGNNWVFGEVMCRATTVIFYGNMYCSILL 184
Query: 434 MTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKP----MSKQEAK 601
+ C+SI R+ A+VHP Y + + +A C VW VF LP I + +Q+ K
Sbjct: 185 LACISISRYLAIVHPFTYRVLPKRYYAFLTCGFVWATVFLYMLPFFILKQEYYLVQQDIK 244
Query: 602 RTTCMEYPNFEETQS--LPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEK 775
TC + N E+ S + + F G+++P ++I+ CY+ I L N ++
Sbjct: 245 --TCHDVHNTCESSSPFQLYYFISLAFFGFLIPFVVIIYCYTAIIQTL------NAYDDR 296
Query: 776 SGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVC 955
KA CF P ++ +I +H N + + I L I +C
Sbjct: 297 WLCYVKA---SLLVLVIFTICFAPSNIILI------IHHANYYYNNTDGLYFIYL-IALC 346
Query: 956 LMNFNCCMDPFIYFFACK 1009
L + N C+DP +YF K
Sbjct: 347 LGSLNSCLDPLLYFLMSK 364
>ref|XP_542839.2| PREDICTED: similar to Probable G-protein coupled receptor 87 [Canis
familiaris].
Length = 358
Score = 121 bits (304), Expect = 2e-27
Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 4/294 (1%)
Frame = +2
Query: 164 ILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYY 343
I++P+ Y I+F R K S Y N+V++D++ T P RI +
Sbjct: 43 IVLPVLYLIIFVASILLNGLAVWIFFHIRNK-TSFIFYLKNIVVADLIMTLTFPFRIVHD 101
Query: 344 ALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCI 523
A W LCR T+++FY N Y + F+ +SIDR+ VV P +++ + K +
Sbjct: 102 AGFGPWYFKFILCRYTSVLFYANMYTSIVFLGLISIDRYLKVVKPFGDSRMYSVTFTKVL 161
Query: 524 CICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQSLPW----ILLGACFIGYVL 691
ICVW+++ +LP +I ++ + + + + + W I + +C +V
Sbjct: 162 SICVWVIMAVLSLPNII--LTNGQLTKENIHDCMKLKSPLGVKWHQAVIYVNSCL--FVA 217
Query: 692 PLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQH 871
L+I++ CY I + K+++Q +S +K + CF PYH+ I
Sbjct: 218 VLVILIGCYIAISRYIHKSSRQ--FISQSSRKRKHNQSIRVVVAVFFTCFLPYHLCRIPF 275
Query: 872 MIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMK 1033
H LL+ S +T+ L N C+DP IYFF C+ + R++ K
Sbjct: 276 TFS--HLDRLLDESAHKILYYCKEMTLFLSACNVCLDPIIYFFMCRSFSRRLFK 327
>ref|XP_543851.1| PREDICTED: similar to Probable G-protein coupled receptor 92 [Canis
familiaris].
Length = 366
Score = 121 bits (303), Expect = 3e-27
Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 8/258 (3%)
Frame = +2
Query: 269 TLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLS 448
++Y NL SD+LFT +LP RI+YYAL W + LC+ VF N Y F+T ++
Sbjct: 56 SVYMCNLAASDLLFTLSLPVRISYYAL-HHWPFSDLLCQTAGAVFQTNMYGSCIFLTLIN 114
Query: 449 IDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLI----KPMSKQEAKRTTCM 616
+DR+ A+VHPLR ++R A+ +C+ VW L+ +P ++ P S + C
Sbjct: 115 VDRYAAIVHPLRLRHLRRPRVARLLCLGVWALILVFAVPTVLVHRPSPCSYDGGRARLCF 174
Query: 617 EY--PNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK 790
E + LP +LL +G++LPL +L ++ L + P +S +
Sbjct: 175 ESFGDKLWKGGLLPLVLLAEA-LGFLLPLAAMLYSSGRVFWTLAR-----PDATRSRRRR 228
Query: 791 KALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQI--ALHITVCLMN 964
K + CF PY+ + + + + NL+ S ++ L + V L +
Sbjct: 229 KTVRLLLANLVIFLLCFVPYNATLAVYGLLR---GNLVAAGSEASDRVRQVLMVMVLLAS 285
Query: 965 FNCCMDPFIYFFACKGYK 1018
NC +DP +Y+F+ +G++
Sbjct: 286 ANCVLDPLVYYFSAEGFR 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,286,418
Number of extensions: 1433881
Number of successful extensions: 3729
Number of sequences better than 1.0e-05: 142
Number of HSP's gapped: 3545
Number of HSP's successfully gapped: 143
Length of query: 609
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 500
Effective length of database: 15,240,880
Effective search space: 7620440000
Effective search space used: 7620440000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003232
(1829 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004942.1| G-protein coupled receptor 183 [Homo sapiens]. 594 e-170
Alignment gi|NP_065110.1| cysteinyl leukotriene receptor 2 [Homo sapiens]. 144 3e-34
Alignment gi|NP_006630.1| cysteinyl leukotriene receptor 1 [Homo sapiens]. 142 1e-33
Alignment gi|NP_001155970.1| lysophosphatidic acid receptor 6 [Homo sapie... 140 3e-33
Alignment gi|NP_001155969.1| lysophosphatidic acid receptor 6 [Homo sapie... 140 3e-33
Alignment gi|NP_005758.2| lysophosphatidic acid receptor 6 [Homo sapiens]. 140 3e-33
Alignment gi|NP_001154889.1| uracil nucleotide/cysteinyl leukotriene rece... 137 4e-32
Alignment gi|NP_001154888.1| uracil nucleotide/cysteinyl leukotriene rece... 137 4e-32
Alignment gi|NP_005282.1| uracil nucleotide/cysteinyl leukotriene recepto... 137 4e-32
Alignment gi|NP_001154887.1| uracil nucleotide/cysteinyl leukotriene rece... 137 4e-32
>ref|NP_004942.1| G-protein coupled receptor 183 [Homo sapiens].
Length = 361
Score = 594 bits (1532), Expect = e-170
Identities = 291/360 (80%), Positives = 307/360 (85%), Gaps = 1/360 (0%)
Frame = +2
Query: 77 DIKM-DNFTTPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRK 253
DI+M +NFT PS PQ +DCDLYAHH TARI+MPLHYS+VF QNRK
Sbjct: 2 DIQMANNFTPPSATPQGNDCDLYAHHSTARIVMPLHYSLVFIIGLVGNLLALVVIVQNRK 61
Query: 254 KINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNF 433
KINSTTLYSTNLVISDILFTTALPTRIAYYA+GFDWRIG+ALCRITALVFYINTYAGVNF
Sbjct: 62 KINSTTLYSTNLVISDILFTTALPTRIAYYAMGFDWRIGDALCRITALVFYINTYAGVNF 121
Query: 434 MTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTC 613
MTCLSIDRF AVVHPLRYNKIKRIEHAK +CI VWILVFAQTLPLLI PMSKQEA+R TC
Sbjct: 122 MTCLSIDRFIAVVHPLRYNKIKRIEHAKGVCIFVWILVFAQTLPLLINPMSKQEAERITC 181
Query: 614 MEYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKK 793
MEYPNFEET+SLPWILLGACFIGYVLPL+IILICYSQICCKLF+TAKQNPLTEKSGVNKK
Sbjct: 182 MEYPNFEETKSLPWILLGACFIGYVLPLIIILICYSQICCKLFRTAKQNPLTEKSGVNKK 241
Query: 794 ALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNC 973
ALNT CFTPYHVAIIQHMIKKL F N LECS+RHSFQI+LH TVCLMNFNC
Sbjct: 242 ALNTIILIIVVFVLCFTPYHVAIIQHMIKKLRFSNFLECSQRHSFQISLHFTVCLMNFNC 301
Query: 974 CMDPFIYFFACKGYKRKVMKMLKRQXXXXXXXXXXXXPEENSREMTETQMMIHSKALNGK 1153
CMDPFIYFFACKGYKRKVM+MLKRQ PEENSREMTETQMMIHSK+ NGK
Sbjct: 302 CMDPFIYFFACKGYKRKVMRMLKRQVSVSISSAVKSAPEENSREMTETQMMIHSKSSNGK 361
>ref|NP_065110.1| cysteinyl leukotriene receptor 2 [Homo sapiens].
Length = 346
Score = 144 bits (363), Expect = 3e-34
Identities = 92/295 (31%), Positives = 140/295 (47%)
Frame = +2
Query: 161 RILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAY 340
R P+ Y I+F Q KK S ++ NL ISD+LF + LP R Y
Sbjct: 38 REFFPIVYLIIFFWGVLGNGLSIYVFLQPYKKSTSVNVFMLNLAISDLLFISTLPFRADY 97
Query: 341 YALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKC 520
Y G +W G+ CRI + Y+N Y+ + F+T LS+ RF A+VHP R + I A
Sbjct: 98 YLRGSNWIFGDLACRIMSYSLYVNMYSSIYFLTVLSVVRFLAMVHPFRLLHVTSIRSAWI 157
Query: 521 ICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQSLPWILLGACFIGYVLPLL 700
+C +WIL+ A ++ +L+ S+Q T+C+E N + L + A +G +LP
Sbjct: 158 LCGIIWILIMASSI-MLLDSGSEQNGSVTSCLEL-NLYKIAKLQTMNYIALVVGCLLPFF 215
Query: 701 IILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIK 880
+ ICY I L K + P + ++KAL T CF PYH H+
Sbjct: 216 TLSICYLLIIRVLLKV--EVPESGLRVSHRKALTTIIITLIIFFLCFLPYHTLRTVHLTT 273
Query: 881 KLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKMLKR 1045
+ C +R AL IT+ L N C +P +Y+FA + +K ++ L++
Sbjct: 274 W----KVGLCKDR--LHKALVITLALAAANACFNPLLYYFAGENFKDRLKSALRK 322
>ref|NP_006630.1| cysteinyl leukotriene receptor 1 [Homo sapiens].
Length = 337
Score = 142 bits (358), Expect = 1e-33
Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 3/266 (1%)
Frame = +2
Query: 254 KINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNF 433
K ++ +Y NL ++D+L LP R+ YY W G+ LCR++ Y+N Y + F
Sbjct: 54 KKSAFQVYMINLAVADLLCVCTLPLRVVYYVHKGIWLFGDFLCRLSTYALYVNLYCSIFF 113
Query: 434 MTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTC 613
MT +S R A+V P++ + + A+ +C+ +WI V + P L+ K E T C
Sbjct: 114 MTAMSFFRCIAIVFPVQNINLVTQKKARFVCVGIWIFVILTSSPFLMAKPQKDEKNNTKC 173
Query: 614 MEYPNFEETQSLPWIL-LGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK 790
E P +T++ +L + F+G+++P +II++CY+ I L K + + L+ +K
Sbjct: 174 FEPPQDNQTKNHVLVLHYVSLFVGFIIPFVIIIVCYTMIILTLLKKSMKKNLSS----HK 229
Query: 791 KALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF--PNLLECSERHSFQIALHITVCLMN 964
KA+ F PYH+ H LHF C Q ++ IT+ L
Sbjct: 230 KAIGMIMVVTAAFLVSFMPYHIQRTIH----LHFLHNETKPCDSVLRMQKSVVITLSLAA 285
Query: 965 FNCCMDPFIYFFACKGYKRKVMKMLK 1042
NCC DP +YFF+ +++++ K
Sbjct: 286 SNCCFDPLLYFFSGGNFRKRLSTFRK 311
>ref|NP_001155970.1| lysophosphatidic acid receptor 6 [Homo sapiens].
Length = 344
Score = 140 bits (354), Expect = 3e-33
Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 4/251 (1%)
Frame = +2
Query: 260 NSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMT 439
N TT Y NL +SD+LF LP RI Y+ +W G+ LC+I+ ++FY N Y + F+T
Sbjct: 50 NETTTYMINLAMSDLLFVFTLPFRIFYFTTR-NWPFGDLLCKISVMLFYTNMYGSILFLT 108
Query: 440 CLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCME 619
C+S+DRF A+V+P + ++ +AK +C VW+ V + P + + + +
Sbjct: 109 CISVDRFLAIVYPFKSKTLRTKRNAKIVCTGVWLTVIGGSAPAVFVQSTHSQGNNASEAC 168
Query: 620 YPNFEET---QSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK 790
+ NF E L I++ +G+ +PL++ + C S + KT + +S +NK
Sbjct: 169 FENFPEATWKTYLSRIVIFIEIVGFFIPLILNVTCSSMV----LKTLTKPVTLSRSKINK 224
Query: 791 -KALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNF 967
K L CF PY++ +I + + + + CS + + IT+C+
Sbjct: 225 TKVLKMIFVHLIIFCFCFVPYNINLILYSLVRTQ--TFVNCSVVAAVRTMYPITLCIAVS 282
Query: 968 NCCMDPFIYFF 1000
NCC DP +Y+F
Sbjct: 283 NCCFDPIVYYF 293
>ref|NP_001155969.1| lysophosphatidic acid receptor 6 [Homo sapiens].
Length = 344
Score = 140 bits (354), Expect = 3e-33
Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 4/251 (1%)
Frame = +2
Query: 260 NSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMT 439
N TT Y NL +SD+LF LP RI Y+ +W G+ LC+I+ ++FY N Y + F+T
Sbjct: 50 NETTTYMINLAMSDLLFVFTLPFRIFYFTTR-NWPFGDLLCKISVMLFYTNMYGSILFLT 108
Query: 440 CLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCME 619
C+S+DRF A+V+P + ++ +AK +C VW+ V + P + + + +
Sbjct: 109 CISVDRFLAIVYPFKSKTLRTKRNAKIVCTGVWLTVIGGSAPAVFVQSTHSQGNNASEAC 168
Query: 620 YPNFEET---QSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK 790
+ NF E L I++ +G+ +PL++ + C S + KT + +S +NK
Sbjct: 169 FENFPEATWKTYLSRIVIFIEIVGFFIPLILNVTCSSMV----LKTLTKPVTLSRSKINK 224
Query: 791 -KALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNF 967
K L CF PY++ +I + + + + CS + + IT+C+
Sbjct: 225 TKVLKMIFVHLIIFCFCFVPYNINLILYSLVRTQ--TFVNCSVVAAVRTMYPITLCIAVS 282
Query: 968 NCCMDPFIYFF 1000
NCC DP +Y+F
Sbjct: 283 NCCFDPIVYYF 293
>ref|NP_005758.2| lysophosphatidic acid receptor 6 [Homo sapiens].
Length = 344
Score = 140 bits (354), Expect = 3e-33
Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 4/251 (1%)
Frame = +2
Query: 260 NSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMT 439
N TT Y NL +SD+LF LP RI Y+ +W G+ LC+I+ ++FY N Y + F+T
Sbjct: 50 NETTTYMINLAMSDLLFVFTLPFRIFYFTTR-NWPFGDLLCKISVMLFYTNMYGSILFLT 108
Query: 440 CLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCME 619
C+S+DRF A+V+P + ++ +AK +C VW+ V + P + + + +
Sbjct: 109 CISVDRFLAIVYPFKSKTLRTKRNAKIVCTGVWLTVIGGSAPAVFVQSTHSQGNNASEAC 168
Query: 620 YPNFEET---QSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK 790
+ NF E L I++ +G+ +PL++ + C S + KT + +S +NK
Sbjct: 169 FENFPEATWKTYLSRIVIFIEIVGFFIPLILNVTCSSMV----LKTLTKPVTLSRSKINK 224
Query: 791 -KALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNF 967
K L CF PY++ +I + + + + CS + + IT+C+
Sbjct: 225 TKVLKMIFVHLIIFCFCFVPYNINLILYSLVRTQ--TFVNCSVVAAVRTMYPITLCIAVS 282
Query: 968 NCCMDPFIYFF 1000
NCC DP +Y+F
Sbjct: 283 NCCFDPIVYYF 293
>ref|NP_001154889.1| uracil nucleotide/cysteinyl leukotriene receptor isoform b [Homo
sapiens].
Length = 339
Score = 137 bits (344), Expect = 4e-32
Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 1/267 (0%)
Frame = +2
Query: 242 QNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYA 421
++ K ++ +L ++D+ LPTR+ Y+ G W GE CR+T +FY+N YA
Sbjct: 58 RDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIACRLTGFLFYLNMYA 117
Query: 422 GVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAK 601
+ F+TC+S DRF A+VHP++ K++R +A C +W++V PLL+ P + Q
Sbjct: 118 SIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMAPLLVSPQTVQTNH 177
Query: 602 RTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSG 781
C++ + E S L + + + P + + CY I ++ +Q EK
Sbjct: 178 TVVCLQL--YREKAS--HHALVSLAVAFTFPFITTVTCYLLI----IRSLRQGLRVEKR- 228
Query: 782 VNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF-PNLLECSERHSFQIALHITVCL 958
+ KA+ CF PYHV + LH+ + C+ + +A IT CL
Sbjct: 229 LKTKAVRMIAIVLAIFLVCFVPYHV---NRSVYVLHYRSHGASCATQRILALANRITSCL 285
Query: 959 MNFNCCMDPFIYFFACKGYKRKVMKML 1039
+ N +DP +YFF + ++ + +L
Sbjct: 286 TSLNGALDPIMYFFVAEKFRHALCNLL 312
>ref|NP_001154888.1| uracil nucleotide/cysteinyl leukotriene receptor isoform b [Homo
sapiens].
Length = 339
Score = 137 bits (344), Expect = 4e-32
Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 1/267 (0%)
Frame = +2
Query: 242 QNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYA 421
++ K ++ +L ++D+ LPTR+ Y+ G W GE CR+T +FY+N YA
Sbjct: 58 RDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIACRLTGFLFYLNMYA 117
Query: 422 GVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAK 601
+ F+TC+S DRF A+VHP++ K++R +A C +W++V PLL+ P + Q
Sbjct: 118 SIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMAPLLVSPQTVQTNH 177
Query: 602 RTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSG 781
C++ + E S L + + + P + + CY I ++ +Q EK
Sbjct: 178 TVVCLQL--YREKAS--HHALVSLAVAFTFPFITTVTCYLLI----IRSLRQGLRVEKR- 228
Query: 782 VNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF-PNLLECSERHSFQIALHITVCL 958
+ KA+ CF PYHV + LH+ + C+ + +A IT CL
Sbjct: 229 LKTKAVRMIAIVLAIFLVCFVPYHV---NRSVYVLHYRSHGASCATQRILALANRITSCL 285
Query: 959 MNFNCCMDPFIYFFACKGYKRKVMKML 1039
+ N +DP +YFF + ++ + +L
Sbjct: 286 TSLNGALDPIMYFFVAEKFRHALCNLL 312
>ref|NP_005282.1| uracil nucleotide/cysteinyl leukotriene receptor isoform a [Homo
sapiens].
Length = 367
Score = 137 bits (344), Expect = 4e-32
Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 1/267 (0%)
Frame = +2
Query: 242 QNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYA 421
++ K ++ +L ++D+ LPTR+ Y+ G W GE CR+T +FY+N YA
Sbjct: 86 RDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIACRLTGFLFYLNMYA 145
Query: 422 GVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAK 601
+ F+TC+S DRF A+VHP++ K++R +A C +W++V PLL+ P + Q
Sbjct: 146 SIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMAPLLVSPQTVQTNH 205
Query: 602 RTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSG 781
C++ + E S L + + + P + + CY I ++ +Q EK
Sbjct: 206 TVVCLQL--YREKAS--HHALVSLAVAFTFPFITTVTCYLLI----IRSLRQGLRVEKR- 256
Query: 782 VNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF-PNLLECSERHSFQIALHITVCL 958
+ KA+ CF PYHV + LH+ + C+ + +A IT CL
Sbjct: 257 LKTKAVRMIAIVLAIFLVCFVPYHV---NRSVYVLHYRSHGASCATQRILALANRITSCL 313
Query: 959 MNFNCCMDPFIYFFACKGYKRKVMKML 1039
+ N +DP +YFF + ++ + +L
Sbjct: 314 TSLNGALDPIMYFFVAEKFRHALCNLL 340
>ref|NP_001154887.1| uracil nucleotide/cysteinyl leukotriene receptor isoform a [Homo
sapiens].
Length = 367
Score = 137 bits (344), Expect = 4e-32
Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 1/267 (0%)
Frame = +2
Query: 242 QNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYA 421
++ K ++ +L ++D+ LPTR+ Y+ G W GE CR+T +FY+N YA
Sbjct: 86 RDHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIACRLTGFLFYLNMYA 145
Query: 422 GVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAK 601
+ F+TC+S DRF A+VHP++ K++R +A C +W++V PLL+ P + Q
Sbjct: 146 SIYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWVVVAVAMAPLLVSPQTVQTNH 205
Query: 602 RTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSG 781
C++ + E S L + + + P + + CY I ++ +Q EK
Sbjct: 206 TVVCLQL--YREKAS--HHALVSLAVAFTFPFITTVTCYLLI----IRSLRQGLRVEKR- 256
Query: 782 VNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF-PNLLECSERHSFQIALHITVCL 958
+ KA+ CF PYHV + LH+ + C+ + +A IT CL
Sbjct: 257 LKTKAVRMIAIVLAIFLVCFVPYHV---NRSVYVLHYRSHGASCATQRILALANRITSCL 313
Query: 959 MNFNCCMDPFIYFFACKGYKRKVMKML 1039
+ N +DP +YFF + ++ + +L
Sbjct: 314 TSLNGALDPIMYFFVAEKFRHALCNLL 340
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,359,422
Number of extensions: 1419182
Number of successful extensions: 4033
Number of sequences better than 1.0e-05: 238
Number of HSP's gapped: 3680
Number of HSP's successfully gapped: 239
Length of query: 609
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 501
Effective length of database: 14,737,052
Effective search space: 7383263052
Effective search space used: 7383263052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003232
(1829 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_898852.2| G-protein coupled receptor 183 [Mus musculus]. 562 e-160
Alignment gi|NP_780325.1| lysophosphatidic acid receptor 6 [Mus musculus]. 143 5e-34
Alignment gi|NP_001020552.1| uracil nucleotide/cysteinyl leukotriene rece... 139 6e-33
Alignment gi|NP_067451.2| cysteinyl leukotriene receptor 1 [Mus musculus]. 137 4e-32
Alignment gi|NP_780480.2| lysophosphatidic acid receptor 4 [Mus musculus]. 135 1e-31
Alignment gi|NP_001155884.1| cysteinyl leukotriene receptor 2 [Mus muscul... 134 2e-31
Alignment gi|NP_598481.2| cysteinyl leukotriene receptor 2 [Mus musculus]. 134 2e-31
Alignment gi|NP_034300.3| proteinase-activated receptor 3 precursor [Mus ... 133 4e-31
Alignment gi|NP_065646.1| P2Y purinoceptor 4 [Mus musculus]. 133 5e-31
Alignment gi|NP_034299.2| proteinase-activated receptor 1 precursor [Mus ... 133 5e-31
>ref|NP_898852.2| G-protein coupled receptor 183 [Mus musculus].
Length = 357
Score = 562 bits (1448), Expect = e-160
Identities = 271/355 (76%), Positives = 292/355 (82%)
Frame = +2
Query: 89 DNFTTPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINST 268
+NFTTP ++CDLYAHH TAR+LMPLHYS+VF QNRKKINST
Sbjct: 3 NNFTTPLATSHGNNCDLYAHHSTARVLMPLHYSLVFIIGLVGNLLALVVIVQNRKKINST 62
Query: 269 TLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLS 448
TLYS NLVISDILFTTALPTRIAYYALGFDWRIG+ALCR+TALVFYINTYAGVNFMTCLS
Sbjct: 63 TLYSMNLVISDILFTTALPTRIAYYALGFDWRIGDALCRVTALVFYINTYAGVNFMTCLS 122
Query: 449 IDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPN 628
IDRFFAVVHPLRYNKIKRIE+AK +C+ VWILVFAQTLPLL+ PMSK+E +TTCMEYPN
Sbjct: 123 IDRFFAVVHPLRYNKIKRIEYAKGVCLSVWILVFAQTLPLLLTPMSKEEGDKTTCMEYPN 182
Query: 629 FEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTX 808
FE T SLPWILLGAC +GYVLP+ +IL+CYSQICCKLF+TAKQNPLTEKSGVNKKALNT
Sbjct: 183 FEGTASLPWILLGACLLGYVLPITVILLCYSQICCKLFRTAKQNPLTEKSGVNKKALNTI 242
Query: 809 XXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPF 988
CFTPYHVAIIQHMIK L P LEC RHSFQI+LH TVCLMNFNCCMDPF
Sbjct: 243 ILIIVVFILCFTPYHVAIIQHMIKMLCSPGALECGARHSFQISLHFTVCLMNFNCCMDPF 302
Query: 989 IYFFACKGYKRKVMKMLKRQXXXXXXXXXXXXPEENSREMTETQMMIHSKALNGK 1153
IYFFACKGYKRKVMKMLKRQ PEENSREMTE+QMMIHSKA NG+
Sbjct: 303 IYFFACKGYKRKVMKMLKRQVSVSISSAVRSAPEENSREMTESQMMIHSKASNGR 357
>ref|NP_780325.1| lysophosphatidic acid receptor 6 [Mus musculus].
Length = 344
Score = 143 bits (360), Expect = 5e-34
Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 4/251 (1%)
Frame = +2
Query: 260 NSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMT 439
N TT Y NL +SD+LF LP RI Y+A +W G+ LC+I+ ++FY N Y + F+T
Sbjct: 50 NETTTYMINLAMSDLLFVFTLPFRIFYFATR-NWPFGDLLCKISVMLFYTNMYGSILFLT 108
Query: 440 CLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTT--C 613
C+S+DRF A+V+P + ++ +AK +CI VW V + P + + + T+ C
Sbjct: 109 CISVDRFLAIVYPFKSKTLRTKRNAKIVCIAVWFTVMGGSAPAVFFQSTHSQGNNTSEAC 168
Query: 614 ME-YPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK 790
E +P L I++ +G+ +PL++ + C S + +T + +S +NK
Sbjct: 169 FENFPAATWKTYLSRIVIFIEIVGFFIPLILNVTCSSMV----LRTLNKPVTLSRSKMNK 224
Query: 791 -KALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNF 967
K L CF PY++ +I + + + + CS + + IT+C+
Sbjct: 225 TKVLKMIFVHLVIFCFCFVPYNINLILYSLMRTQ--TFVNCSVVAAVRTMYPITLCIAVS 282
Query: 968 NCCMDPFIYFF 1000
NCC DP +Y+F
Sbjct: 283 NCCFDPIVYYF 293
>ref|NP_001020552.1| uracil nucleotide/cysteinyl leukotriene receptor [Mus musculus].
Length = 339
Score = 139 bits (351), Expect = 6e-33
Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 1/266 (0%)
Frame = +2
Query: 245 NRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAG 424
+ K ++ +L ++D+ LPTR+ Y+ G W GE CR+T +FY+N YA
Sbjct: 59 DHKSGTPANVFLMHLAVADLSCVLVLPTRLVYHFSGNHWPFGEIPCRLTGFLFYLNMYAS 118
Query: 425 VNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKR 604
+ F+TC+S DRF A+VHP++ K++R +A C +WI+V PLL+ P + Q
Sbjct: 119 IYFLTCISADRFLAIVHPVKSLKLRRPLYAHLACAFLWIVVAVAMAPLLVSPQTVQTNHT 178
Query: 605 TTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGV 784
C++ + E S L + + + P + + CY I ++ +Q P EK +
Sbjct: 179 VVCLQL--YREKAS--HHALASLAVAFTFPFITTVTCYLLI----IRSLRQGPRIEKH-L 229
Query: 785 NKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF-PNLLECSERHSFQIALHITVCLM 961
KA+ CF PYH I + LH+ C+ + + + IT CL
Sbjct: 230 KNKAVRMIAMVLAIFLICFVPYH---IHRSVYVLHYRGGGTSCAAQRALALGNRITSCLT 286
Query: 962 NFNCCMDPFIYFFACKGYKRKVMKML 1039
+ N +DP +YFF + ++ + +L
Sbjct: 287 SLNGALDPVMYFFVAEKFRHALCNLL 312
>ref|NP_067451.2| cysteinyl leukotriene receptor 1 [Mus musculus].
Length = 352
Score = 137 bits (344), Expect = 4e-32
Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 1/258 (0%)
Frame = +2
Query: 272 LYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSI 451
+Y NL I+D+L LP R+ YY W G+ LCR+T Y+N Y + FMT +S
Sbjct: 75 VYMINLAIADLLCVCTLPLRVVYYVHKGKWLFGDFLCRLTTYALYVNLYCSIFFMTAMSF 134
Query: 452 DRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNF 631
R A+V P++ + + A+ +CI +WI V + P L+ + E T C E P
Sbjct: 135 FRCVAIVFPVQNINLVTQKKARFVCIGIWIFVILTSSPFLMYKSYQDEKNNTKCFEPPQN 194
Query: 632 EETQSLPWIL-LGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTX 808
+ + IL + F G+++P + I++CY+ I L K N + + +KA+
Sbjct: 195 NQAKKYVLILHYVSLFFGFIIPFVTIIVCYTMIILTLLK----NTMKKNMPSRRKAIGMI 250
Query: 809 XXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPF 988
F PYH+ H+ L C Q ++ IT+ L NCC DP
Sbjct: 251 IVVTAAFLVSFMPYHIQRTIHL--HLLHSETRPCDSVLRMQKSVVITLSLAASNCCFDPL 308
Query: 989 IYFFACKGYKRKVMKMLK 1042
+YFF+ ++R++ K
Sbjct: 309 LYFFSGGNFRRRLSTFRK 326
>ref|NP_780480.2| lysophosphatidic acid receptor 4 [Mus musculus].
Length = 370
Score = 135 bits (340), Expect = 1e-31
Identities = 80/281 (28%), Positives = 130/281 (46%), Gaps = 1/281 (0%)
Frame = +2
Query: 182 YSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDW 361
YS+VF K + T ++ TNL +SD+LF LP +I +Y W
Sbjct: 46 YSVVFILGLITNSASLFVFCFRMKMRSETAIFITNLALSDLLFVCTLPFKI-FYNFNRHW 104
Query: 362 RIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWI 541
G+ LC+I+ F N Y + F+TC+S+DRF A+V+P R I+ ++ +C VWI
Sbjct: 105 PFGDTLCKISGTAFLTNIYGSMLFLTCISVDRFLAIVYPFRSRTIRTRRNSAIVCAGVWI 164
Query: 542 LVFAQTLPLLIKPMSKQEAKRTTCME-YPNFEETQSLPWILLGACFIGYVLPLLIILICY 718
LV + + + + TTC E + L I + +G+++PL++ + C
Sbjct: 165 LVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEVVGFIIPLILNVSCS 224
Query: 719 SQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPN 898
S + L K A L++ KK L CF PY+ + + + +
Sbjct: 225 SVVLRTLRKPA---TLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYAL--VRSQA 279
Query: 899 LLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKR 1021
+ C +I IT+CL NCC DPFIY+F + +++
Sbjct: 280 ITNCLLERFAKIMYPITLCLATLNCCFDPFIYYFTLESFQK 320
>ref|NP_001155884.1| cysteinyl leukotriene receptor 2 [Mus musculus].
Length = 309
Score = 134 bits (337), Expect = 2e-31
Identities = 82/291 (28%), Positives = 136/291 (46%)
Frame = +2
Query: 173 PLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALG 352
P+ Y I+F Q KK S ++ NL SD LF + LP R YY G
Sbjct: 26 PIIYLIIFFWGALGNGFSIYVFLQTCKKSTSVNVFMLNLATSDFLFISTLPFRADYYFRG 85
Query: 353 FDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICIC 532
+W G+ CR+ + Y+N Y + F+T LS+ RF A VHP R + + A +C
Sbjct: 86 SNWIFGDLACRVMSYSLYVNMYTSIYFLTVLSVVRFLATVHPFRMFHVTSVRSAWILCGI 145
Query: 533 VWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILI 712
+W+ + A + LL+ +++ +C+E + ++ +SL + A +G++LP L + +
Sbjct: 146 IWVFIMASSALLLVNGQEEKD-NIISCLEL-SPQKFKSLLIMNHIAVAVGFLLPFLTLTV 203
Query: 713 CYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF 892
CY I L K + P + ++KAL T CF PYH ++ LH
Sbjct: 204 CYLLIIRILLKA--EIPESGPRAAHRKALTTIVIAMITFLLCFLPYHA------LRTLHL 255
Query: 893 PNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKMLKR 1045
+ S A IT+ + N C +PF+Y+FA + +K ++ + +
Sbjct: 256 VTWDKDSCGDVLHKATVITLTMAAANSCFNPFLYYFAGENFKARLRAIFSK 306
>ref|NP_598481.2| cysteinyl leukotriene receptor 2 [Mus musculus].
Length = 309
Score = 134 bits (337), Expect = 2e-31
Identities = 82/291 (28%), Positives = 136/291 (46%)
Frame = +2
Query: 173 PLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALG 352
P+ Y I+F Q KK S ++ NL SD LF + LP R YY G
Sbjct: 26 PIIYLIIFFWGALGNGFSIYVFLQTCKKSTSVNVFMLNLATSDFLFISTLPFRADYYFRG 85
Query: 353 FDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICIC 532
+W G+ CR+ + Y+N Y + F+T LS+ RF A VHP R + + A +C
Sbjct: 86 SNWIFGDLACRVMSYSLYVNMYTSIYFLTVLSVVRFLATVHPFRMFHVTSVRSAWILCGI 145
Query: 533 VWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQSLPWILLGACFIGYVLPLLIILI 712
+W+ + A + LL+ +++ +C+E + ++ +SL + A +G++LP L + +
Sbjct: 146 IWVFIMASSALLLVNGQEEKD-NIISCLEL-SPQKFKSLLIMNHIAVAVGFLLPFLTLTV 203
Query: 713 CYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHF 892
CY I L K + P + ++KAL T CF PYH ++ LH
Sbjct: 204 CYLLIIRILLKA--EIPESGPRAAHRKALTTIVIAMITFLLCFLPYHA------LRTLHL 255
Query: 893 PNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKMLKR 1045
+ S A IT+ + N C +PF+Y+FA + +K ++ + +
Sbjct: 256 VTWDKDSCGDVLHKATVITLTMAAANSCFNPFLYYFAGENFKARLRAIFSK 306
>ref|NP_034300.3| proteinase-activated receptor 3 precursor [Mus musculus].
Length = 369
Score = 133 bits (335), Expect = 4e-31
Identities = 88/319 (27%), Positives = 143/319 (44%), Gaps = 15/319 (4%)
Frame = +2
Query: 98 TTPSQAPQESDCDLYAHHDTARIL--------MPLHYSIVFXXXXXXXXXXXXXXXQNRK 253
T ++ P++S L+ ++ T L +P Y ++F K
Sbjct: 64 TIKAECPEDSISTLHVNNATIGYLRSSLSTQVIPAIYILLFVVGVPANIVTLWKLSLRTK 123
Query: 254 KINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNF 433
I S ++ TNL I+D+LF LP +IAY+ G +W GE CRIT +VFY N Y +
Sbjct: 124 SI-SLVIFHTNLAIADLLFCVTLPFKIAYHLNGNNWVFGEVTCRITTVVFYGNMYCAILI 182
Query: 434 MTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQE-----A 598
+TC+ I+R+ A HP Y K+ + + +C VW++VF LP +I KQE +
Sbjct: 183 LTCMGINRYLATAHPFTYQKLPKRSFSMLMCGMVWVMVFLYMLPFVI---LKQEYHLVHS 239
Query: 599 KRTTCMEYPNFEETQS--LPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTE 772
+ TTC + + E+ S + + F G+++P +II+ CY+ + K L
Sbjct: 240 EITTCHDVVDACESPSSFRFYYFVSLAFFGFLIPFVIIIFCYTTLIHK---------LKS 290
Query: 773 KSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITV 952
K + + CF P ++ ++ H + S I +
Sbjct: 291 KDRIWLGYIKAVLLILVIFTICFAPTNIILVIHHANYYY-------HNTDSLYFMYLIAL 343
Query: 953 CLMNFNCCMDPFIYFFACK 1009
CL + N C+DPF+YF K
Sbjct: 344 CLGSLNSCLDPFLYFVMSK 362
>ref|NP_065646.1| P2Y purinoceptor 4 [Mus musculus].
Length = 361
Score = 133 bits (334), Expect = 5e-31
Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 1/317 (0%)
Frame = +2
Query: 95 FTTPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTL 274
FT+ +P D D + + IL+PL Y++VF + ++T
Sbjct: 9 FTSLGPSPSSGDGDCKFNEEFKFILLPLSYAVVFVLGLALNAPTLWLFLFRLRPWDATAT 68
Query: 275 YSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSID 454
Y +L +SD L+ +LPT + YYA W G C+ +FY N Y V F+TC+S+
Sbjct: 69 YMFHLALSDTLYVLSLPTLVYYYAARNHWPFGTGFCKFVRFLFYWNLYCSVLFLTCISVH 128
Query: 455 RFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFE 634
R+ + HPLR + R A +C+ VW++V +P L + C + E
Sbjct: 129 RYMGICHPLRAIRWGRPRFAGLLCLGVWLVVAGCLVPNLFFVTTNANGTTILCHDTTLPE 188
Query: 635 ETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXX 814
E + + + P LI L+CY + +L++ P +S ++L T
Sbjct: 189 EFDHYVYFSSTIMVLLFGFPFLITLVCYGLMARRLYRPL---PGAGQSSSRLRSLRTIAV 245
Query: 815 XXXXXXXCFTPYHVA-IIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFI 991
CF P+H+ I ++ + L+ EC + + +T L + N C+DP +
Sbjct: 246 VLTVFAVCFVPFHITRTIYYLARLLN----AECRVLNIVNVVYKVTRPLASANSCLDPVL 301
Query: 992 YFFACKGYKRKVMKMLK 1042
Y F Y+ ++ ++ +
Sbjct: 302 YLFTGDKYRNQLQQLCR 318
>ref|NP_034299.2| proteinase-activated receptor 1 precursor [Mus musculus].
Length = 430
Score = 133 bits (334), Expect = 5e-31
Identities = 87/323 (26%), Positives = 145/323 (44%), Gaps = 7/323 (2%)
Frame = +2
Query: 92 NFTTPSQAPQ----ESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKI 259
N + P P D Y + MP Y+IVF K
Sbjct: 80 NISLPPHTPPPPFISEDASGYLTSPWLTLFMPSVYTIVFIVSLPLNVLAIAVFVLRMKVK 139
Query: 260 NSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMT 439
+Y +L ++D+LF + LP +I+YY G DW+ G +CR FY N YA + MT
Sbjct: 140 KPAVVYMLHLAMADVLFVSVLPFKISYYFSGTDWQFGSGMCRFATAAFYGNMYASIMLMT 199
Query: 440 CLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQ--EAKRTTC 613
+SIDRF AVV+P++ + + A C+ +W++ +PLL+K + + TTC
Sbjct: 200 VISIDRFLAVVYPIQSLSWRTLGRANFTCVVIWVMAIMGVVPLLLKEQTTRVPGLNITTC 259
Query: 614 MEYPNFEETQSL-PWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNK 790
+ + Q + I +++PL++ +CY+ I L +A N ++KS
Sbjct: 260 HDVLSENLMQGFYSYYFSAFSAIFFLVPLIVSTVCYTSIIRCLSSSAVAN-RSKKS---- 314
Query: 791 KALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFN 970
+AL CF P +V +I +H+ L + + A + VC+ + +
Sbjct: 315 RALFLSAAVFCIFIVCFGPTNVLLI------VHYLFLSDSPGTEAAYFAYLLCVCVSSVS 368
Query: 971 CCMDPFIYFFACKGYKRKVMKML 1039
CC+DP IY++A +R + +L
Sbjct: 369 CCIDPLIYYYASSECQRHLYSIL 391
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,182,444
Number of extensions: 1234020
Number of successful extensions: 4167
Number of sequences better than 1.0e-05: 185
Number of HSP's gapped: 3843
Number of HSP's successfully gapped: 185
Length of query: 609
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 502
Effective length of database: 12,403,707
Effective search space: 6226660914
Effective search space used: 6226660914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003232
(1829 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131111.1| PREDICTED: LOW QUALITY PROTEIN: G-protein co... 648 0.0
Alignment gi|XP_003131113.2| PREDICTED: G-protein coupled receptor 183-li... 224 9e-59
Alignment gi|NP_999295.1| cysteinyl leukotriene receptor 2 [Sus scrofa]. 143 4e-34
Alignment gi|NP_999294.1| cysteinyl leukotriene receptor 1 [Sus scrofa]. 141 1e-33
Alignment gi|XP_001928973.1| PREDICTED: lysophosphatidic acid receptor 4 ... 135 6e-32
Alignment gi|XP_003360424.1| PREDICTED: lysophosphatidic acid receptor 4 ... 135 6e-32
Alignment gi|XP_003123759.1| PREDICTED: proteinase-activated receptor 3-l... 134 2e-31
Alignment gi|XP_003135202.2| PREDICTED: p2Y purinoceptor 4 [Sus scrofa]. 129 7e-30
Alignment gi|XP_003132537.1| PREDICTED: G-protein coupled receptor 87 [Su... 127 2e-29
Alignment gi|XP_003123771.1| PREDICTED: proteinase-activated receptor 1-l... 127 2e-29
>ref|XP_003131111.1| PREDICTED: LOW QUALITY PROTEIN: G-protein coupled receptor 183-like
[Sus scrofa].
Length = 356
Score = 648 bits (1671), Expect = 0.0
Identities = 318/356 (89%), Positives = 318/356 (89%)
Frame = +2
Query: 86 MDNFTTPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINS 265
MDNFTTPSQAPQESDCDLY HHDTARILMPLHYSIVF QNRKKINS
Sbjct: 1 MDNFTTPSQAPQESDCDLYXHHDTARILMPLHYSIVFIIGLLGNLLALTVIIQNRKKINS 60
Query: 266 TTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCL 445
TTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCL
Sbjct: 61 TTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCL 120
Query: 446 SIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYP 625
SIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYP
Sbjct: 121 SIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYP 180
Query: 626 NFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNT 805
NFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNT
Sbjct: 181 NFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNT 240
Query: 806 XXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDP 985
CFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDP
Sbjct: 241 IIFIIVVFVVCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDP 300
Query: 986 FIYFFACKGYKRKVMKMLKRQXXXXXXXXXXXXPEENSREMTETQMMIHSKALNGK 1153
FIYFFACKGYKRKVMKMLKRQ PEENSREMTETQMMIHSKALNGK
Sbjct: 301 FIYFFACKGYKRKVMKMLKRQVSVSISSAVKSAPEENSREMTETQMMIHSKALNGK 356
>ref|XP_003131113.2| PREDICTED: G-protein coupled receptor 183-like [Sus scrofa].
Length = 444
Score = 224 bits (572), Expect = 9e-59
Identities = 115/302 (38%), Positives = 169/302 (55%), Gaps = 2/302 (0%)
Frame = +2
Query: 143 AHHD--TARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTT 316
+HH + + L Y+ + Q KKINST +Y +L +SD+LFT
Sbjct: 109 SHHPPRAVSVALSLFYAALLVFSALGNILALCLAYQKGKKINSTGIYLVHLAVSDLLFTL 168
Query: 317 ALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKI 496
ALP +I YY L F W G A CR+TAL+ Y+NTY+G+ MTC+S+DR AV +
Sbjct: 169 ALPGKIVYYMLDFSWPFGGAFCRLTALILYLNTYSGIYLMTCVSVDRSLAVARARPCPRP 228
Query: 497 KRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQSLPWILLGACF 676
+ A+ C+ VW L QT PLL+ PMSK+ A R TCME+ + E LP ++LG
Sbjct: 229 REPGRARLACVAVWALASLQTAPLLLIPMSKRVAGRLTCMEFESVEPVLGLPVLVLGTSA 288
Query: 677 IGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHV 856
+ + P I+L CY ++ KL +TA+ +PLT ++A CF PYH+
Sbjct: 289 VSFCGPAGILLFCYLKVTLKLCRTAQDSPLTSGKRHYRRACLLTLVVLVAVAVCFVPYHL 348
Query: 857 AIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKM 1036
+IQ M++KL C E+ +F++ L +TVC+MN NC +DP IY FA Y+++++ +
Sbjct: 349 NVIQFMVRKL--LRRPTCPEQRAFKLCLQLTVCIMNLNCGIDPVIYSFASTRYRKRLLGI 406
Query: 1037 LK 1042
LK
Sbjct: 407 LK 408
>ref|NP_999295.1| cysteinyl leukotriene receptor 2 [Sus scrofa].
Length = 345
Score = 143 bits (360), Expect = 4e-34
Identities = 91/295 (30%), Positives = 144/295 (48%)
Frame = +2
Query: 161 RILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAY 340
R P+ Y ++F + KK S ++ NL ISD+LFT LP R+ Y
Sbjct: 39 REFYPIVYLVIFIWGALGNGFSIYVFLKPYKKSTSVNVFMLNLAISDLLFTITLPFRVDY 98
Query: 341 YALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKC 520
Y G + G+ CRI + Y+N Y+ + F+T LS+ RF A VHP R I++A
Sbjct: 99 YLRGSNXIFGDTPCRIMSYSMYVNMYSSIYFLTVLSVVRFLATVHPFRLLHTTSIKNAWI 158
Query: 521 ICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEETQSLPWILLGACFIGYVLPLL 700
+C +WI + A + +L+K S+Q+ T C+E N + L + A +G+VLP
Sbjct: 159 LCGVIWIFIMASS-TVLLKNGSEQKDNVTLCLEL-NSNKVTKLKTMNYVALVVGFVLPFG 216
Query: 701 IILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTXXXXXXXXXXCFTPYHVAIIQHMIK 880
+ ICY I L K + P + ++KAL T CF PYHV H+++
Sbjct: 217 TLSICYLLIIRALLKV--EVPESGLRLSHRKALITVIIALIIFLLCFLPYHVLRTLHLLE 274
Query: 881 KLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKRKVMKMLKR 1045
+C +R A+ +T+ L N C +PF+Y+FA + +K ++ L++
Sbjct: 275 W----KADKCKDR--LHKAVAVTLALAAANSCFNPFLYYFAGENFKDRLKSALRK 323
>ref|NP_999294.1| cysteinyl leukotriene receptor 1 [Sus scrofa].
Length = 340
Score = 141 bits (356), Expect = 1e-33
Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 3/247 (1%)
Frame = +2
Query: 272 LYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSI 451
+Y NL ++D+L LP R+ YY W G+ LCR++ Y+N Y + FMT +S
Sbjct: 63 VYMINLAVADLLCVCTLPLRVVYYVHKGIWLFGDFLCRLSTYALYVNLYCSIFFMTAMSF 122
Query: 452 DRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNF 631
R A+V P++ + + AK +CI +WI V + P L+ K E T C E P
Sbjct: 123 FRCIAIVFPVQNINLITHKKAKIVCIAIWIFVILTSSPFLMSTSYKDEKNNTKCFEPPQX 182
Query: 632 EETQSLPWIL-LGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTX 808
+ + +L + F+G+++P +II++CY+ I L K + + ++ + KKA+
Sbjct: 183 NQAKYHVLVLHYVSLFVGFIIPFVIIIVCYTMIILTLLKNSMKKNISSR----KKAIGMI 238
Query: 809 XXXXXXXXXCFTPYHVAIIQHMIKKLHF--PNLLECSERHSFQIALHITVCLMNFNCCMD 982
F PYH+ H LHF + C Q ++ IT+ L NCC D
Sbjct: 239 IVVTAAFLISFMPYHIQRTIH----LHFLHNDTKHCDSVLRMQKSVXITLSLAASNCCFD 294
Query: 983 PFIYFFA 1003
P +YFF+
Sbjct: 295 PLLYFFS 301
>ref|XP_001928973.1| PREDICTED: lysophosphatidic acid receptor 4 isoform 1 [Sus scrofa].
Length = 408
Score = 135 bits (341), Expect = 6e-32
Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 2/282 (0%)
Frame = +2
Query: 182 YSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDW 361
YS+VF K + T ++ TNL +SD+LF LP +I +Y W
Sbjct: 84 YSVVFILGLITNSASLFVFCFRMKMRSETAIFITNLALSDLLFVCTLPFKI-FYNFNRHW 142
Query: 362 RIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWI 541
G+ LC+I+ F N Y + F+TC+S+DRF A+V+P R I+ ++ +C VWI
Sbjct: 143 PFGDTLCKISGTAFLTNIYGSMLFLTCISVDRFLAIVYPFRSRTIRTRRNSAIVCAGVWI 202
Query: 542 LVFAQTLPLLIKPMSKQEAKRTTCME-YPNFEETQSLPWILLGACFIGYVLPLLIILICY 718
+V + + + + TTC E + L I + +G+++PL++ + C
Sbjct: 203 IVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEVVGFIIPLILNVSCS 262
Query: 719 SQICCKLFKTAKQNPLTEKSGVN-KKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFP 895
S + KT ++ + G N KK L CF PY+ + + + +
Sbjct: 263 SVV----LKTLRKPATLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYAL--VRSQ 316
Query: 896 NLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKR 1021
+ C +I IT+CL NCC DPFIY+F + +++
Sbjct: 317 AITNCLLERFAKIMYPITLCLATLNCCFDPFIYYFTLESFQK 358
>ref|XP_003360424.1| PREDICTED: lysophosphatidic acid receptor 4 [Sus scrofa].
Length = 370
Score = 135 bits (341), Expect = 6e-32
Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 2/282 (0%)
Frame = +2
Query: 182 YSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDW 361
YS+VF K + T ++ TNL +SD+LF LP +I +Y W
Sbjct: 46 YSVVFILGLITNSASLFVFCFRMKMRSETAIFITNLALSDLLFVCTLPFKI-FYNFNRHW 104
Query: 362 RIGEALCRITALVFYINTYAGVNFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWI 541
G+ LC+I+ F N Y + F+TC+S+DRF A+V+P R I+ ++ +C VWI
Sbjct: 105 PFGDTLCKISGTAFLTNIYGSMLFLTCISVDRFLAIVYPFRSRTIRTRRNSAIVCAGVWI 164
Query: 542 LVFAQTLPLLIKPMSKQEAKRTTCME-YPNFEETQSLPWILLGACFIGYVLPLLIILICY 718
+V + + + + TTC E + L I + +G+++PL++ + C
Sbjct: 165 IVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEVVGFIIPLILNVSCS 224
Query: 719 SQICCKLFKTAKQNPLTEKSGVN-KKALNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFP 895
S + KT ++ + G N KK L CF PY+ + + + +
Sbjct: 225 SVV----LKTLRKPATLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYAL--VRSQ 278
Query: 896 NLLECSERHSFQIALHITVCLMNFNCCMDPFIYFFACKGYKR 1021
+ C +I IT+CL NCC DPFIY+F + +++
Sbjct: 279 AITNCLLERFAKIMYPITLCLATLNCCFDPFIYYFTLESFQK 320
>ref|XP_003123759.1| PREDICTED: proteinase-activated receptor 3-like [Sus scrofa].
Length = 378
Score = 134 bits (337), Expect = 2e-31
Identities = 94/321 (29%), Positives = 146/321 (45%), Gaps = 17/321 (5%)
Frame = +2
Query: 98 TTPSQ--APQESDCDLYAHHDT--------ARILMPLHYSIVFXXXXXXXXXXXXXXXQN 247
TTP + P+ES +L+ ++ T + L+P Y +VF
Sbjct: 63 TTPIKIKCPEESVSNLHVNNATMGYLSSSLSTKLIPAIYILVFAVGVPANAVTLWMLFFR 122
Query: 248 RKKINSTTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGV 427
+ I T Y TNL I+D LF LP RIAY+ G +W GE +CR T ++FY N Y +
Sbjct: 123 TRSIRMTIFY-TNLAIADFLFCVTLPFRIAYHLNGNNWVFGEVMCRATTVIFYGNMYCSI 181
Query: 428 NFMTCLSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKR- 604
+ C+SI+R+ A+VHP Y + + +A C VW+ VF LPL I ++
Sbjct: 182 LLLACISINRYLAIVHPFTYRGLPKRTYALLTCGLVWVTVFLYMLPLFILKQEYYLVQQG 241
Query: 605 -TTCMEYPNFEETQS--LPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEK 775
TTC + N E+ S + + F G+++P L+I+ CY+ I L
Sbjct: 242 ITTCHDVHNTCESSSPFQLYYFISLAFFGFLIPFLVIIYCYTAIIRTL------------ 289
Query: 776 SGVNKKAL---NTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHI 946
+ +++ L CF P ++ +I +H N + + I L I
Sbjct: 290 NAYDRRWLWYVRVSLLVLVIFTICFAPSNITLI------IHHANYYYNNTDGLYFIYL-I 342
Query: 947 TVCLMNFNCCMDPFIYFFACK 1009
+CL + N C+DPF+YF K
Sbjct: 343 ALCLGSLNSCLDPFLYFLMSK 363
>ref|XP_003135202.2| PREDICTED: p2Y purinoceptor 4 [Sus scrofa].
Length = 365
Score = 129 bits (323), Expect = 7e-30
Identities = 79/321 (24%), Positives = 143/321 (44%), Gaps = 4/321 (1%)
Frame = +2
Query: 95 FTT--PSQAPQESDC--DLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKIN 262
FTT P P++S+ D + + IL+P+ Y++VF + +
Sbjct: 9 FTTLGPHSDPEDSEVEPDCRFNEEFKFILLPVSYAVVFVLGLGLNGPTIWLFLFRLRPWD 68
Query: 263 STTLYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTC 442
+T +Y +L +SD L+ +LPT + YYA W G LC+ +FY N Y V F+TC
Sbjct: 69 ATAIYMFHLALSDTLYVLSLPTLVYYYAARNHWPFGTGLCKFIRFLFYWNLYCSVLFLTC 128
Query: 443 LSIDRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEY 622
+S+ R+ + HPLR + R A +C+ VW++V +P L + + C +
Sbjct: 129 ISVHRYLGICHPLRALRWGRPRIASLLCLAVWLVVAGCLVPNLFFVTTSTKGDTILCHDT 188
Query: 623 PNFEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALN 802
EE + + +P ++ L+CY + +L++ P +S ++L
Sbjct: 189 TRPEEFDHYVHFSSAVMGLLFGVPCVVTLVCYGLMARRLYQPL---PGAAQSSTRVRSLR 245
Query: 803 TXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMD 982
T CF P+H+ + + +L +C + + +T L + N C+D
Sbjct: 246 TIAVVLTVFAICFVPFHITRTVYYLARL---LEADCWVLNIVNVVYKVTRPLASANSCLD 302
Query: 983 PFIYFFACKGYKRKVMKMLKR 1045
P +Y Y+R++ ++ R
Sbjct: 303 PVLYLLTGDKYRRQLRQLCGR 323
>ref|XP_003132537.1| PREDICTED: G-protein coupled receptor 87 [Sus scrofa].
Length = 358
Score = 127 bits (320), Expect = 2e-29
Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 4/315 (1%)
Frame = +2
Query: 101 TPSQAPQESDCDLYAHHDTARILMPLHYSIVFXXXXXXXXXXXXXXXQNRKKINSTTLYS 280
TPS + +++ I++PL Y ++F R K S Y
Sbjct: 22 TPSNVSDAPGKNATINNEFNTIVLPLLYLVIFVASILLNGLAVWIFFHIRNK-TSFIFYL 80
Query: 281 TNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSIDRF 460
N+V++D++ T P RI + A W LCR T+++FY N Y + F+ +SIDR+
Sbjct: 81 KNIVVADLIMTLTFPFRIVHDAGFGPWYFKFILCRYTSVLFYANMYTSIVFLGLISIDRY 140
Query: 461 FAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSKQEAKRTTCMEYPNFEET 640
VV P +++ + K + ICVW+L+ +LP +I ++ + R E +
Sbjct: 141 LKVVKPFGDSRMYSVTFTKVLSICVWVLMAVLSLPNII--LTNGQPTRENIHECVKLKSP 198
Query: 641 QSLPW----ILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKALNTX 808
+ W I + +C +V L+I++ CY I + K+++Q +S +K +
Sbjct: 199 LGVKWHNAIIYVNSCL--FVAVLVILIGCYIAISRYIHKSSRQ--FISQSSRKRKHNQSI 254
Query: 809 XXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCCMDPF 988
CF PYH+ I H LL+ S +T+ L N C+DP
Sbjct: 255 RVVVAVFFTCFLPYHLCRIPFTFS--HLDRLLDDSAHKILYYCKEMTLFLSACNVCLDPI 312
Query: 989 IYFFACKGYKRKVMK 1033
IYFF C+ + R++ K
Sbjct: 313 IYFFMCRSFSRRLFK 327
>ref|XP_003123771.1| PREDICTED: proteinase-activated receptor 1-like [Sus scrofa].
Length = 697
Score = 127 bits (319), Expect = 2e-29
Identities = 81/261 (31%), Positives = 127/261 (48%), Gaps = 5/261 (1%)
Frame = +2
Query: 272 LYSTNLVISDILFTTALPTRIAYYALGFDWRIGEALCRITALVFYINTYAGVNFMTCLSI 451
+Y +L +D+LF + LP +I+YY G DW G A+CR FY N YA + MT +SI
Sbjct: 411 VYMLHLATADVLFVSVLPFKISYYFSGSDWTFGSAMCRFVTAAFYGNMYASIMLMTVISI 470
Query: 452 DRFFAVVHPLRYNKIKRIEHAKCICICVWILVFAQTLPLLIKPMSK--QEAKRTTCMEYP 625
DRF AVV+P++ + + A C+ +W + A +PLL+K + TTC +
Sbjct: 471 DRFLAVVYPIQSLSWRTLGRASFTCLAIWAMAIAGVVPLLLKEQTTLVPGLNVTTCHDVL 530
Query: 626 N---FEETQSLPWILLGACFIGYVLPLLIILICYSQICCKLFKTAKQNPLTEKSGVNKKA 796
N E + + A F + +PL+I +CY I L + N ++KS +A
Sbjct: 531 NQTLLEGYYAYYFSAFSAVF--FFVPLIISTVCYVSIIRCLSSSTVANQ-SKKS----RA 583
Query: 797 LNTXXXXXXXXXXCFTPYHVAIIQHMIKKLHFPNLLECSERHSFQIALHITVCLMNFNCC 976
L CF P +V +I LH+ L S + A + VC+ + +CC
Sbjct: 584 LFLSAAVFCIFILCFGPTNVLLI------LHYAFLSHNSMTEAAYFAYLLCVCVSSISCC 637
Query: 977 MDPFIYFFACKGYKRKVMKML 1039
+DP IY++A +R + +L
Sbjct: 638 IDPLIYYYASSECQRYLYSIL 658
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,006,779
Number of extensions: 1337096
Number of successful extensions: 3404
Number of sequences better than 1.0e-05: 154
Number of HSP's gapped: 3163
Number of HSP's successfully gapped: 155
Length of query: 609
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 504
Effective length of database: 8,729,747
Effective search space: 4399792488
Effective search space used: 4399792488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003232
(1829 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 2742 0.0
>Sscrofa_Chr11
|| Length = 87690581
Score = 2742 bits (1383), Expect = 0.0
Identities = 1430/1447 (98%), Gaps = 2/1447 (0%)
Strand = Plus / Minus
Query: 54 agagaccctgaacactgccgaaggatataaaaatggacaatttcacgaccccctcgcaag 113
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 75529880 agagaccctgaacactgccgacggatataaaaatggacaatttcacgaccccctcgcaag 75529821
Query: 114 ctcctcaggaaagtgactgtgacctctacgcccaccacgacacagccaggatcctcatgc 173
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 75529820 ctcctcaggaaagtgactgtgacctctac--ccaccatgacacagccaggatcctcatgc 75529763
Query: 174 ctctgcattacagcatcgtcttcataatcgggctcctgggaaacttgttggccctgattg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 75529762 ctctgcattacagcatcgtcttcataatcgggctcctgggaaacttgttggccctgactg 75529703
Query: 234 tcattattcaaaacaggnnnnnnntcaactctaccactctatattcaaccaacttggtga 293
||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 75529702 tcattattcaaaacaggaaaaaaataaactctaccactctatattcaaccaacttggtga 75529643
Query: 294 tttcggatatactgtttaccactgctctgcctacacggatagcctactatgcgctgggct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529642 tttcggatatactgtttaccactgctctgcctacacggatagcctactatgcgctgggct 75529583
Query: 354 ttgactggagaattggcgaggccttgtgcaggataactgctctcgtgttttatatcaaca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529582 ttgactggagaattggcgaggccttgtgcaggataactgctctcgtgttttatatcaaca 75529523
Query: 414 catacgcaggcgtgaacttcatgacctgcctgagtattgaccggttctttgctgtggtgc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529522 catacgcaggcgtgaacttcatgacctgcctgagtattgaccggttctttgctgtggtgc 75529463
Query: 474 accccctgcggtacaacaagataaaaagaattgaacatgcaaagtgcatctgcatatgcg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529462 accccctgcggtacaacaagataaaaagaattgaacatgcaaagtgcatctgcatatgcg 75529403
Query: 534 tctggattcttgtatttgctcaaacactcccgctgctcataaaacccatgtcaaagcagg 593
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 75529402 tctggattcttgtatttgctcaaacactccctctgctcataaaacccatgtcaaagcagg 75529343
Query: 594 aggctaaaaggactacgtgcatggagtatccaaactttgaggaaacacaatccctcccct 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529342 aggctaaaaggactacgtgcatggagtatccaaactttgaggaaacacaatccctcccct 75529283
Query: 654 ggattctgcttggggcctgtttcatagggtatgtacttccgctcttaatcatcctcatct 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529282 ggattctgcttggggcctgtttcatagggtatgtacttccgctcttaatcatcctcatct 75529223
Query: 714 gctactctcagatctgctgcaaactcttcaaaacggccaaacaaaacccgctaaccgaga 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529222 gctactctcagatctgctgcaaactcttcaaaacggccaaacaaaacccgctaaccgaga 75529163
Query: 774 aatctggtgtaaacaaaaaggctctcaacacaatcattttcataattgttgtgtttgttg 833
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529162 aatccggtgtaaacaaaaaggctctcaacacaatcattttcataattgttgtgtttgttg 75529103
Query: 834 tctgtttcacaccttaccacgttgccattatccagcacatgattaagaagcttcattttc 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529102 tctgtttcacaccttaccacgttgccattatccagcacatgattaagaagcttcattttc 75529043
Query: 894 ctaatcttctggaatgtagtgaaagacattcattccagatagctctgcacatcacggtgt 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75529042 ctaatcttctggaatgtagtgaaagacattcattccagatagctctgcacatcacggtgt 75528983
Query: 954 gcctgatgaacttcaactgctgcatggaccctttcatatacttctttgcgtgtaaagggt 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528982 gcctgatgaacttcaactgctgcatggaccctttcatatacttctttgcgtgtaaagggt 75528923
Query: 1014 acaagaggaaggtcatgaagatgctgaaacgtcaagtcagcgtgtcaatttctagtgctg 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528922 acaagaggaaggtcatgaagatgctgaaacgtcaagtcagcgtgtcaatttctagtgctg 75528863
Query: 1074 tgaagtcagcccctgaagaaaactcccgtgaaatgacggaaacgcaaatgatgatccatt 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528862 tgaagtcagcccctgaagaaaactcccgtgaaatgacggaaacgcaaatgatgatccatt 75528803
Query: 1134 cgaaggctttaaatggaaagtaaagaggaatcaaatcttggatttacagcaaaataaact 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528802 cgaaggctttaaatggaaagtaaagaggaatcaaatcttggatttacagcaaaataaact 75528743
Query: 1194 atgtgaggaactttgcaggacttttctcataaagcaaaacagttgttccacttccagtga 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528742 atgtgaggaactttgcaggacttttctcataaagcaaaacagttgttccacttccagtga 75528683
Query: 1254 ggattcggttccattcctttcactcggtaccatttctcacctccaacttggaagtaaaac 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528682 ggattcggttccattcctttcactcggtaccatttctcacctccaacttggaagtaaaac 75528623
Query: 1314 ggtatttatgtatttttcacacttaggagaacaacattaagcaaagttctaattcgtaaa 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528622 ggtatttatgtatttttcacacttaggagaacaacattaagcaaagttctaattcgtaaa 75528563
Query: 1374 tgaagtcctacaccaaagggagagtatgtgaataactctcagcgaaaaaagacaagtttg 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 75528562 tgaagtcctacaccaaagggagagtatgtgaataactctcagcgaaaaaagactagtttg 75528503
Query: 1434 gttttaatgaaaaatttaatcattaatatttcccaccaataatttggcaaaagaaaaaaa 1493
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 75528502 gttttaatgaaaaatttaatcattaatatttcccaccattaatttggcaaaagaaaaaaa 75528443
Query: 1494 gactgtt 1500
|||||||
Sbjct: 75528442 gactgtt 75528436
Score = 129 bits (65), Expect = 6e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1715 cagaagaaagactgttaaaaactgtatattgccaatgtagaaatgttaatattgtaacat 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75528222 cagaagaaagactgttaaaaactgtatattgccaatgtagaaatgttaatattgtaacat 75528163
Query: 1775 ctttc 1779
|||||
Sbjct: 75528162 ctttc 75528158
Score = 109 bits (55), Expect = 5e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 1 agtttgggtgaatactgacggctaccacacagaggccccaacaaggcaccgagag 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75542045 agtttgggtgaatactgacggctaccacacagaggccccaacaaggcaccgagag 75541991
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,956,574
Number of extensions: 352
Number of successful extensions: 352
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 4
Length of query: 1829
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1807
Effective length of database: 2,808,408,574
Effective search space: 5074794293218
Effective search space used: 5074794293218
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)