Animal-Genome cDNA 20110601C-003233


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003233
         (1256 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030548.1| spermine synthase [Bos taurus].                   660   0.0  

>ref|NP_001030548.1| spermine synthase [Bos taurus].
          Length = 365

 Score =  660 bits (1702), Expect = 0.0
 Identities = 332/365 (90%), Positives = 334/365 (91%)
 Frame = +1

Query: 115  MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
            MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN
Sbjct: 1    MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 60

Query: 295  LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
            LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID
Sbjct: 61   LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 120

Query: 475  RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
            RYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI
Sbjct: 121  RYWPTADGRLVEYDIDKVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 180

Query: 655  MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
            MGSGKEDY+GKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 181  MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 240

Query: 835  DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 1014
            DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL
Sbjct: 241  DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 300

Query: 1015 LMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTVG 1194
             MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP  L   VFYTV 
Sbjct: 301  SMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVW 360

Query: 1195 KEAKP 1209
            K+AKP
Sbjct: 361  KKAKP 365


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,859,289
Number of extensions: 1078422
Number of successful extensions: 3376
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3374
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 313
Effective length of database: 14,207,134
Effective search space: 4446832942
Effective search space used: 4446832942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003233
         (1256 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849539.1| PREDICTED: similar to spermine synthase isoform...   530   e-151
Alignment   gi|XP_859139.1| PREDICTED: similar to spermine synthase isoform...   511   e-145
Alignment   gi|XP_537978.2| PREDICTED: similar to spermine synthase isoform...   466   e-131
Alignment   gi|XP_859101.1| PREDICTED: similar to spermine synthase isoform...   437   e-122
Alignment   gi|XP_534157.1| PREDICTED: similar to spermine synthase [Canis ...   275   7e-74
Alignment   gi|XP_853586.1| PREDICTED: similar to spermine synthase [Canis ...   231   8e-61
Alignment   gi|XP_853122.1| PREDICTED: similar to spermine synthase [Canis ...   194   2e-49
Alignment   gi|XP_853131.1| PREDICTED: similar to Spermine synthase (Spermi...   183   3e-46

>ref|XP_849539.1| PREDICTED: similar to spermine synthase isoform 2 [Canis familiaris].
          Length = 313

 Score =  530 bits (1366), Expect = e-151
 Identities = 277/365 (75%), Positives = 281/365 (76%)
 Frame = +1

Query: 115  MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
            MAAARHSTLDF LGA+ADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNG    
Sbjct: 1    MAAARHSTLDFKLGARADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNG---- 56

Query: 295  LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
                                                            RLPPIVRGGAID
Sbjct: 57   ------------------------------------------------RLPPIVRGGAID 68

Query: 475  RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
            RYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYT+AI
Sbjct: 69   RYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTQAI 128

Query: 655  MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
            MGSGKEDY+GKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 129  MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 188

Query: 835  DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 1014
            DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL
Sbjct: 189  DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 248

Query: 1015 LMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTVG 1194
             MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP  L   VFYTV 
Sbjct: 249  SMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVW 308

Query: 1195 KEAKP 1209
            K+AKP
Sbjct: 309  KKAKP 313


>ref|XP_859139.1| PREDICTED: similar to spermine synthase isoform 4 [Canis
           familiaris].
          Length = 311

 Score =  511 bits (1315), Expect = e-145
 Identities = 256/287 (89%), Positives = 261/287 (90%)
 Frame = +1

Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
           MAAARHSTLDF LGA+ADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN
Sbjct: 1   MAAARHSTLDFKLGARADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 60

Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
           LRIYPHGLVLLDLQSYDGD+QG+EVDSLLNKVEERMKELSQDST RVKRLPPIVRGGAID
Sbjct: 61  LRIYPHGLVLLDLQSYDGDSQGQEVDSLLNKVEERMKELSQDSTGRVKRLPPIVRGGAID 120

Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
           RYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYT+AI
Sbjct: 121 RYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTQAI 180

Query: 655 MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
           MGSGKEDY+GKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 181 MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 240

Query: 835 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE 975
           DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE
Sbjct: 241 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE 287


>ref|XP_537978.2| PREDICTED: similar to spermine synthase isoform 1 [Canis familiaris].
          Length = 270

 Score =  466 bits (1199), Expect = e-131
 Identities = 235/270 (87%), Positives = 238/270 (88%)
 Frame = +1

Query: 400  MKELSQDSTERVKRLPPIVRGGAIDRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSK 579
            MKELSQDST RVKRLPPIVRGGAIDRYWPTADGRL             SPYQNIKILHSK
Sbjct: 1    MKELSQDSTGRVKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSK 60

Query: 580  QFGNILILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMV 759
            QFGNILILSGDVNLAESDLAYT+AIMGSGKEDY+GKDV           CEIVKLKPKMV
Sbjct: 61   QFGNILILSGDVNLAESDLAYTQAIMGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMV 120

Query: 760  TMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVIND 939
            TMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVIND
Sbjct: 121  TMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVIND 180

Query: 940  LTAVPISTSPEEDSTWEFLRLILDLLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY 1119
            LTAVPISTSPEEDSTWEFLRLILDL MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY
Sbjct: 181  LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY 240

Query: 1120 CPVEFSKEIVCVPXILXFVVFYTVGKEAKP 1209
            CPVEFSKEIVCVP  L   VFYTV K+AKP
Sbjct: 241  CPVEFSKEIVCVPSYLELWVFYTVWKKAKP 270


>ref|XP_859101.1| PREDICTED: similar to spermine synthase isoform 3 [Canis
           familiaris].
          Length = 257

 Score =  437 bits (1123), Expect = e-122
 Identities = 218/250 (87%), Positives = 224/250 (89%)
 Frame = +1

Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
           MAAARHSTLDF LGA+ADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN
Sbjct: 1   MAAARHSTLDFKLGARADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 60

Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
           LRIYPHGLVLLDLQSYDGD+QG+EVDSLLNKVEERMKELSQDST RVKRLPPIVRGGAID
Sbjct: 61  LRIYPHGLVLLDLQSYDGDSQGQEVDSLLNKVEERMKELSQDSTGRVKRLPPIVRGGAID 120

Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
           RYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYT+AI
Sbjct: 121 RYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTQAI 180

Query: 655 MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
           MGSGKEDY+GKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 181 MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 240

Query: 835 DNLKGDCYQV 864
           DNLKGDCYQ+
Sbjct: 241 DNLKGDCYQI 250


>ref|XP_534157.1| PREDICTED: similar to spermine synthase [Canis familiaris].
          Length = 152

 Score =  275 bits (703), Expect = 7e-74
 Identities = 135/152 (88%), Positives = 141/152 (92%)
 Frame = +1

Query: 754  MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVI 933
            MVTMVEIDQMVIDGCKKYMRKT GDVLD+LKGDCYQVLIEDCIPVL RYA++ REFDYVI
Sbjct: 1    MVTMVEIDQMVIDGCKKYMRKTWGDVLDDLKGDCYQVLIEDCIPVLGRYAEQRREFDYVI 60

Query: 934  NDLTAVPISTSPEEDSTWEFLRLILDLLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGR 1113
            NDLTAVPISTSPEEDSTWEFLRLILDL M+VLKQDG+YFTQGNC NLTEALSLYEEQLGR
Sbjct: 61   NDLTAVPISTSPEEDSTWEFLRLILDLSMRVLKQDGEYFTQGNCANLTEALSLYEEQLGR 120

Query: 1114 LYCPVEFSKEIVCVPXILXFVVFYTVGKEAKP 1209
            LYCPVEFSKEIVCVP  L   VFYTV K+AKP
Sbjct: 121  LYCPVEFSKEIVCVPSYLELWVFYTVWKKAKP 152


>ref|XP_853586.1| PREDICTED: similar to spermine synthase [Canis familiaris].
          Length = 132

 Score =  231 bits (590), Expect = 8e-61
 Identities = 111/130 (85%), Positives = 120/130 (92%)
 Frame = +1

Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
           MAAAR STLDF LGA+ADGETILKGL+S+FQEQGMTESVHTW DHGYLATY+NKNG FAN
Sbjct: 1   MAAARRSTLDFQLGARADGETILKGLRSVFQEQGMTESVHTWPDHGYLATYVNKNGGFAN 60

Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
           LRIYP GLVLLDLQS DGD+QG+EVDSLLNKVEE +KELS+D T RVKRLPPIVRGGA+D
Sbjct: 61  LRIYPRGLVLLDLQSCDGDSQGQEVDSLLNKVEEGLKELSEDGTGRVKRLPPIVRGGAVD 120

Query: 475 RYWPTADGRL 504
           RYWP ADGRL
Sbjct: 121 RYWPAADGRL 130


>ref|XP_853122.1| PREDICTED: similar to spermine synthase [Canis familiaris].
          Length = 110

 Score =  194 bits (492), Expect = 2e-49
 Identities = 96/101 (95%), Positives = 97/101 (96%)
 Frame = +1

Query: 754  MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVI 933
            MVTMVEIDQMVID  KKYMRKTCGDVL+NLKGD YQVLIEDCIPVLKRYAKEGREFDYVI
Sbjct: 1    MVTMVEIDQMVIDEYKKYMRKTCGDVLNNLKGDSYQVLIEDCIPVLKRYAKEGREFDYVI 60

Query: 934  NDLTAVPISTSPEEDSTWEFLRLILDLLMKVLKQDGKYFTQ 1056
            NDLTAVPISTSPEEDSTWEFLRLILDL MKVLKQDGKYFTQ
Sbjct: 61   NDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 101


>ref|XP_853131.1| PREDICTED: similar to Spermine synthase (Spermidine
           aminopropyltransferase) (SPMSY) [Canis familiaris].
          Length = 156

 Score =  183 bits (465), Expect = 3e-46
 Identities = 109/193 (56%), Positives = 117/193 (60%)
 Frame = +1

Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
           MAAARHS LDF LGA+ADGETILKGLQ IFQEQGMTE V+         T   KN     
Sbjct: 1   MAAARHSMLDFKLGARADGETILKGLQFIFQEQGMTELVY---------TCRRKN----- 46

Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
                                               + LSQDSTERVK+LPPI+RGGAID
Sbjct: 47  ------------------------------------ERLSQDSTERVKQLPPILRGGAID 70

Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
           RYWPTA GRL             SPYQN KILHSKQFG ILILSGDVNLAESDLA+T+ I
Sbjct: 71  RYWPTAHGRLVEYDIDEVVYDEDSPYQNTKILHSKQFGYILILSGDVNLAESDLAFTQDI 130

Query: 655 MGSGKEDYTGKDV 693
            GSGKEDY+GKDV
Sbjct: 131 KGSGKEDYSGKDV 143


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,757,057
Number of extensions: 1108154
Number of successful extensions: 3373
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3372
Number of HSP's successfully gapped: 10
Length of query: 418
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 313
Effective length of database: 15,374,224
Effective search space: 4812132112
Effective search space used: 4812132112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003233
         (1256 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004586.2| spermine synthase [Homo sapiens].                    649   0.0  

>ref|NP_004586.2| spermine synthase [Homo sapiens].
          Length = 366

 Score =  649 bits (1674), Expect = 0.0
 Identities = 328/366 (89%), Positives = 331/366 (90%), Gaps = 1/366 (0%)
 Frame = +1

Query: 115  MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
            MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGM ESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1    MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMAESVHTWQDHGYLATYTNKNGSFAN 60

Query: 295  LRIYPHGLVLLDLQSYDGDAQGKE-VDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
            LRIYPHGLVLLDLQSYDGDAQGKE +DS+LNKVEERMKELSQDST RVKRLPPIVRGGAI
Sbjct: 61   LRIYPHGLVLLDLQSYDGDAQGKEEIDSILNKVEERMKELSQDSTGRVKRLPPIVRGGAI 120

Query: 472  DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
            DRYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121  DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180

Query: 652  IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
            IMGSGKEDYTGKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV
Sbjct: 181  IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 240

Query: 832  LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
            LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD
Sbjct: 241  LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 300

Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
            L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP  L   VFYTV
Sbjct: 301  LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360

Query: 1192 GKEAKP 1209
             K+AKP
Sbjct: 361  WKKAKP 366


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,011,121
Number of extensions: 1099542
Number of successful extensions: 3277
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3273
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 313
Effective length of database: 14,835,944
Effective search space: 4643650472
Effective search space used: 4643650472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003233
         (1256 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033240.3| spermine synthase [Mus musculus].                    635   0.0  
Alignment   gi|XP_001473484.1| PREDICTED: spermine synthase-like [Mus muscu...   635   0.0  
Alignment   gi|XP_001473196.1| PREDICTED: spermine synthase-like [Mus muscu...   635   0.0  

>ref|NP_033240.3| spermine synthase [Mus musculus].
          Length = 366

 Score =  635 bits (1638), Expect = 0.0
 Identities = 320/366 (87%), Positives = 326/366 (89%), Gaps = 1/366 (0%)
 Frame = +1

Query: 115  MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
            MAAARHSTLDF LGAKADGE ILKGLQSIFQEQGMTESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1    MAAARHSTLDFKLGAKADGEAILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFAN 60

Query: 295  LRIYPHGLVLLDLQSYDGDAQGK-EVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
            LRIYPHGLVLLDLQSYD D QGK E DSLLNK+EE+MKELSQDST RVKRLPPIVRGGAI
Sbjct: 61   LRIYPHGLVLLDLQSYDSDVQGKQETDSLLNKIEEKMKELSQDSTGRVKRLPPIVRGGAI 120

Query: 472  DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
            DRYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121  DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180

Query: 652  IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
            IMGSGKEDYTGKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMR+TCGDV
Sbjct: 181  IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRRTCGDV 240

Query: 832  LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
            LDNL+GDCYQVLIEDCIPVLK YAKEGREFDYVINDLTAVPISTSPEEDSTW+FLRLILD
Sbjct: 241  LDNLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAVPISTSPEEDSTWDFLRLILD 300

Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
            L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP  L   VFYTV
Sbjct: 301  LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360

Query: 1192 GKEAKP 1209
             K+AKP
Sbjct: 361  WKKAKP 366


>ref|XP_001473484.1| PREDICTED: spermine synthase-like [Mus musculus].
          Length = 366

 Score =  635 bits (1638), Expect = 0.0
 Identities = 320/366 (87%), Positives = 326/366 (89%), Gaps = 1/366 (0%)
 Frame = +1

Query: 115  MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
            MAAARHSTLDF LGAKADGE ILKGLQSIFQEQGMTESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1    MAAARHSTLDFKLGAKADGEAILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFAN 60

Query: 295  LRIYPHGLVLLDLQSYDGDAQGK-EVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
            LRIYPHGLVLLDLQSYD D QGK E DSLLNK+EE+MKELSQDST RVKRLPPIVRGGAI
Sbjct: 61   LRIYPHGLVLLDLQSYDSDVQGKQETDSLLNKIEEKMKELSQDSTGRVKRLPPIVRGGAI 120

Query: 472  DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
            DRYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121  DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180

Query: 652  IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
            IMGSGKEDYTGKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMR+TCGDV
Sbjct: 181  IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRRTCGDV 240

Query: 832  LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
            LDNL+GDCYQVLIEDCIPVLK YAKEGREFDYVINDLTAVPISTSPEEDSTW+FLRLILD
Sbjct: 241  LDNLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAVPISTSPEEDSTWDFLRLILD 300

Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
            L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP  L   VFYTV
Sbjct: 301  LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360

Query: 1192 GKEAKP 1209
             K+AKP
Sbjct: 361  WKKAKP 366


>ref|XP_001473196.1| PREDICTED: spermine synthase-like [Mus musculus].
          Length = 366

 Score =  635 bits (1638), Expect = 0.0
 Identities = 320/366 (87%), Positives = 326/366 (89%), Gaps = 1/366 (0%)
 Frame = +1

Query: 115  MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
            MAAARHSTLDF LGAKADGE ILKGLQSIFQEQGMTESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1    MAAARHSTLDFKLGAKADGEAILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFAN 60

Query: 295  LRIYPHGLVLLDLQSYDGDAQGK-EVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
            LRIYPHGLVLLDLQSYD D QGK E DSLLNK+EE+MKELSQDST RVKRLPPIVRGGAI
Sbjct: 61   LRIYPHGLVLLDLQSYDSDVQGKQETDSLLNKIEEKMKELSQDSTGRVKRLPPIVRGGAI 120

Query: 472  DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
            DRYWPTADGRL             SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121  DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180

Query: 652  IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
            IMGSGKEDYTGKDV           CEIVKLKPKMVTMVEIDQMVIDGCKKYMR+TCGDV
Sbjct: 181  IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRRTCGDV 240

Query: 832  LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
            LDNL+GDCYQVLIEDCIPVLK YAKEGREFDYVINDLTAVPISTSPEEDSTW+FLRLILD
Sbjct: 241  LDNLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAVPISTSPEEDSTWDFLRLILD 300

Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
            L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP  L   VFYTV
Sbjct: 301  LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360

Query: 1192 GKEAKP 1209
             K+AKP
Sbjct: 361  WKKAKP 366


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,315,047
Number of extensions: 935027
Number of successful extensions: 2757
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2750
Number of HSP's successfully gapped: 3
Length of query: 418
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 314
Effective length of database: 12,493,815
Effective search space: 3923057910
Effective search space used: 3923057910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003233
         (1256 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,186,374
Number of extensions: 690716
Number of successful extensions: 2149
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2149
Number of HSP's successfully gapped: 0
Length of query: 418
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 316
Effective length of database: 8,804,438
Effective search space: 2782202408
Effective search space used: 2782202408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003233
         (1256 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr11                                                         846   0.0  
Sscrofa_Chr16                                                         601   e-169
Sscrofa_ChrX                                                          351   6e-94

>Sscrofa_Chr11 
||          Length = 87690581

 Score =  846 bits (427), Expect = 0.0
 Identities = 996/1170 (85%), Gaps = 34/1170 (2%)
 Strand = Plus / Plus

                                                                            
Query: 104      ctcgcctcactatggcagcagcacggcacagcacgctcgacttcatgctcggcgccaaag 163
                |||||||| |||  |||||||||| || |||||| ||| ||||||||||| | ||||  |
Sbjct: 64227592 ctcgcctccctacagcagcagcactgcccagcaccctcaacttcatgctctgtgccagcg 64227651

                                                                            
Query: 164      ctgatggtgagaccattctgaaaggcctccagtccattttccaggagcaggggatgacag 223
                |||||||  |||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 64227652 ctgatggcaagaccattctgaaaggcctccaatccattttgcaggagcaggggatgacag 64227711

                                                                            
Query: 224      agtcggtgcacacctggcaggatcatggctatttagcgacctacatcaacaaaaac--gg 281
                |||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||   ||
Sbjct: 64227712 agtcagtgcacacctggcaggaccatggctatttagtgacctacataaacaaaaaaatgg 64227771

                                                                            
Query: 282      cagctttgccaatttgagaattta-tccacatggattggtgttgctggaccttcagagtt 340
                |||||||| |||| | |||||||| | ||||  |||||||| ||||||||||||||||||
Sbjct: 64227772 cagctttgtcaatataagaatttaatgcaca--gattggtgatgctggaccttcagagtt 64227829

                                                                            
Query: 341      acgacggtgatgcacaaggcaaagaagttgacagtcttttgaacaaagtagaagaaagaa 400
                | || | |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 64227830 atgatgatgatgcacaaggcaaagaggttgatagtcttttgaacaaagtagaagaaagaa 64227889

                                                                            
Query: 401      tgaaagaactgagtcaggacagtactgagcgagtgaagcgattaccacccatcgttcgag 460
                 ||||||| |||||||||||||||||||||   |||||| | |||||| ||| ||| |||
Sbjct: 64227890 ggaaagaattgagtcaggacagtactgagcagatgaagccactaccactcatagtttgag 64227949

                                                                            
Query: 461      gaggggccatcgacagatactggcccactgccgatggccgcctggtggagtacgacatag 520
                || ||| |||| |||| |||||| |||| ||||| ||| |||||||||| || |||||||
Sbjct: 64227950 gaagggtcatccacagctactggaccacagccgacggctgcctggtggaatatgacatag 64228009

                                                                            
Query: 521      atgaggtggtatatgatgaagactcgccttaccagaacattaaaattttacactcgaaac 580
                ||||||| |||||||||||  |||| |||||| ||| |||| ||||||||||  ||||||
Sbjct: 64228010 atgaggttgtatatgatgagcactcaccttacaagagcattcaaattttacatgcgaaac 64228069

                                                                            
Query: 581      agtttggaaatatcctcatcctcagtggggatgttaatttggcggaaagtgatttggcat 640
                |||||||||| || ||| |||||||| |||||||||||||||||||| || || |   ||
Sbjct: 64228070 agtttggaaacattctcttcctcagtagggatgttaatttggcggaacgtaatgt-taat 64228128

                                                                            
Query: 641      acacccgggccatcatgggcagcggcaaagaagattacactggcaaagatgtactgattc 700
                   |   |     ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 64228129 cttctttg--ttgcatgggcagtggcaaagaagattacactggcaaagatgtactgattc 64228186

                                                                            
Query: 701      tgggaggtggagatgggggcatattatgtgaaatagtcaaactaaaaccaaagatggtca 760
                |  |||   ||| |||||||||| ||||||||  ||||||||| |||| |||||||||||
Sbjct: 64228187 tatgag--agagctgggggcatagtatgtgaa--agtcaaactgaaactaaagatggtca 64228242

                                                                            
Query: 761      ctatggtagagattgaccaaatggtgattgacggatgtaagaaatacatgagaaaaacgt 820
                ||| ||||||||||||||||| ||||| |||  |||||||||||||||||  | ||||||
Sbjct: 64228243 ctagggtagagattgaccaaagggtgactgatagatgtaagaaatacatgcaagaaacgt 64228302

                                                                            
Query: 821      gtggtgacgtcttagacaatcttaaaggagactgctat----------caggttctaata 870
                ||  |||| |||||||| |||||||||||| ||||| |           |||||||||||
Sbjct: 64228303 gtcatgacctcttagaccatcttaaaggaggctgctctagaacatggctaggttctaata 64228362

                                                                            
Query: 871      gaagactgcattccagtactgaagaggtacgccaaagaagggagagagtttgattatgtg 930
                 ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct: 64228363 aaagactg-attccagtactgaagaggtacgccagagaagggagagaatttgattacgtg 64228421

                                                                            
Query: 931      attaatgatttgacagccgttccaatctccacatctccggaagaagattccacgtgg--g 988
                |||| ||||| ||| ||| |||| ||||   |||||| ||||||| ||||||  |||  |
Sbjct: 64228422 attagtgattcgacggccattcccatct---catctcgggaagaatattccatatgggag 64228478

                                                                            
Query: 989      agtttctcagactgattcttgaccttctc-atgaaagtattgaaacaggatggaaaatat 1047
                |||| ||||| ||||||||||||| |||| ||||||||| |||| |||||||| ||| ||
Sbjct: 64228479 agttcctcagtctgattcttgacc-tctcaatgaaagtactgaagcaggatgggaaa-at 64228536

                                                                            
Query: 1048     tttacacaggggaactgtgtcaatttgacggaggccctgtcactctatgaagaacagctg 1107
                ||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 64228537 tttacacaggggagctgtgtcaatttgaggaaagccctgtcactctatgaagaacagctg 64228596

                                                                            
Query: 1108     gggcgcctgtattgtcctgtggaattctcgaaggagatcgtctgtgtccccntcatactg 1167
                ||| |||||||||||||||||||||| || ||||||||| ||||||| ||| ||||||| 
Sbjct: 64228597 gggtgcctgtattgtcctgtggaattttcaaaggagatcttctgtgt-cccttcatactt 64228655

                                                                            
Query: 1168     gnatttgt-ggtattttacactgttggnaaagaagctaaaccttgnaaatcagtttcccc 1226
                | | |||| ||||||||||  |||| | ||  ||||||| ||||| ||||||||||||||
Sbjct: 64228656 ggaattgtgggtattttacggtgtttggaagaaagctaagccttgaaaatcagtttcccc 64228715

                                              
Query: 1227     -aatcacgtgtgctgcaaatagccttcctg 1255
                  |||| |||||||||||||||||||||||
Sbjct: 64228716 tgatcaagtgtgctgcaaatagccttcctg 64228745


>Sscrofa_Chr16 
||          Length = 86898991

 Score =  601 bits (303), Expect = e-169
 Identities = 605/695 (87%), Gaps = 24/695 (3%)
 Strand = Plus / Plus

                                                                            
Query: 565      attttacactcgaaacagtttggaaatatcctcatcctcagtggggatgttaatttggcg 624
                |||||||||||  |||||||||||||| | |  |||||||||| ||||||||||||||| 
Sbjct: 74164336 attttacactcagaacagtttggaaatgttcctatcctcagtgaggatgttaatttggca 74164395

                                                                            
Query: 625      gaaagtgatttggcatacacccgggccatcatgggcagcggcaaagaagattacactggc 684
                |||||||||||||| || | ||  |||||||||||||| ||||||||   ||||||||||
Sbjct: 74164396 gaaagtgatttggcgtatatccatgccatcatgggcagtggcaaaga---ttacactggc 74164452

                                                                            
Query: 685      aaagatgtactgattctgggaggtggagatgggggcatattatgtgaaatagtcaaacta 744
                 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||  | 
Sbjct: 74164453 caagatgtactgattctgggaggtggacatgggggcatattatgt-aaatagtcaagatg 74164511

                                                                            
Query: 745      aaaccaaagatggtcactatggtagagattgaccaaatggtgattgacggatgtaagaaa 804
                |||||||||||||||||||||||||| |  ||| |||||||||||||| || ||||||||
Sbjct: 74164512 aaaccaaagatggtcactatggtagacagcgac-aaatggtgattgacagaggtaagaaa 74164570

                                                                            
Query: 805      tacatgagaaaaacgtgtggtgacgtcttagacaatcttaaaggagactgctatcaggtt 864
                 || |||||||||   |        |||||||| ||||||||||||||||||||| ||||
Sbjct: 74164571 cacctgagaaaaaaaaga-------tcttagacgatcttaaaggagactgctatcgggtt 74164623

                                                                            
Query: 865      ctaatagaagactgcattccagtactgaagaggtacgccaaagaagggagagagtttgat 924
                ||||||  |||||| |||||||| |||||||  || ||||||||||||||||||||||||
Sbjct: 74164624 ctaatattagactgtattccagttctgaagaactatgccaaagaagggagagagtttgat 74164683

                                                                            
Query: 925      tatgtgattaatgatttgacagccgttccaatctccacatctccggaagaagattccacg 984
                ||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| 
Sbjct: 74164684 tatgtgattaatgatttgacagctgttccaatcgccacatctccacaagaagattccaca 74164743

                                                                            
Query: 985      tgggagtttctcagactgattcttgaccttctc-atgaaagtattgaaacaggatggaaa 1043
                ||||||||||||  | |||||||||||| |||| ||||||||||| ||||||||||| ||
Sbjct: 74164744 tgggagtttctc--attgattcttgacc-tctcaatgaaagtattaaaacaggatgggaa 74164800

                                                                            
Query: 1044     atattttacacaggggaactgtgtcaatttgacggaggccctgtcactctatgaagaaca 1103
                ||||||  |||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct: 74164801 atattt--cacaggggaactgtgtcaatttgacggaagctctgtcactctatgaagaata 74164858

                                                                            
Query: 1104     gctggggcgcctgtattgtcctgtggaattctcgaaggagatcgtctgtgtccccntcat 1163
                |||||||| ||||||||||||||||||||||||||   ||||| ||||||| ||| ||||
Sbjct: 74164859 gctggggcacctgtattgtcctgtggaattctcga---agatcatctgtgt-cccttcat 74164914

                                                                            
Query: 1164     actggnatttgt-ggtattttacactgttggnaaagaagctaaaccttgnaaatcagttt 1222
                | | | |  ||| |||||||||||||||| | ||  ||||| ||||||| ||||||||||
Sbjct: 74164915 atttggaactgtgggtattttacactgtttggaagaaagctcaaccttgaaaatcagttt 74164974

                                                   
Query: 1223     ccc-caatcacgtgtgctgcaaatagccttcctga 1256
                |||  |||||||||||||||||| |||||||||||
Sbjct: 74164975 cccataatcacgtgtgctgcaaagagccttcctga 74165009



 Score =  258 bits (130), Expect = 7e-66
 Identities = 263/312 (84%), Gaps = 19/312 (6%)
 Strand = Plus / Plus

                                                                            
Query: 88       aggcatggcacagggcctcgcctcactatggcagcagcacggcacagcacgctcgacttc 147
                ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 74163855 aggcatggcacaggggctcgcctcactatggcagcagcacagcacagcaccctcgacttc 74163914

                                                                            
Query: 148      atgctcggcgccaaagctgatggtgagaccattctgaaaggcctccagtccattttccag 207
                | ||| |||||||||||||||||  ||||||||||||||||||||||||||||| |||| 
Sbjct: 74163915 acgcttggcgccaaagctgatggcaagaccattctgaaaggcctccagtccattctccaa 74163974

                                                                            
Query: 208      gagcaggggatgacagagtcggtgcacacctggcaggatcatggctatttagcgacctac 267
                |||||||||||||||||||| |                   ||| ||||||| |||| ||
Sbjct: 74163975 gagcaggggatgacagagtcag-------------------tgggtatttagtgaccaac 74164015

                                                                            
Query: 268      atcaacaaaaacggcagctttgccaatttgagaatttatccacatggattggtgttgctg 327
                |||||||||||  |||  || ||||||||||||||||| ||||||||||||||||||| |
Sbjct: 74164016 atcaacaaaaatagcacgttcgccaatttgagaatttagccacatggattggtgttgccg 74164075

                                                                            
Query: 328      gaccttcagagttacgacggtgatgcacaaggcaaagaagttgacagtcttttgaacaaa 387
                ||||||| | |||||||| || |||  ||||||||||| |  ||||| ||||||||||||
Sbjct: 74164076 gaccttcggggttacgacagtaatgtgcaaggcaaagaggccgacaggcttttgaacaaa 74164135

                            
Query: 388      gtagaagaaaga 399
                ||||||||||||
Sbjct: 74164136 gtagaagaaaga 74164147


>Sscrofa_ChrX 
||          Length = 144288218

 Score =  351 bits (177), Expect = 6e-94
 Identities = 177/177 (100%)
 Strand = Plus / Plus

                                                                            
Query: 440      gattaccacccatcgttcgaggaggggccatcgacagatactggcccactgccgatggcc 499
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332605 gattaccacccatcgttcgaggaggggccatcgacagatactggcccactgccgatggcc 19332664

                                                                            
Query: 500      gcctggtggagtacgacatagatgaggtggtatatgatgaagactcgccttaccagaaca 559
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332665 gcctggtggagtacgacatagatgaggtggtatatgatgaagactcgccttaccagaaca 19332724

                                                                         
Query: 560      ttaaaattttacactcgaaacagtttggaaatatcctcatcctcagtggggatgtta 616
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332725 ttaaaattttacactcgaaacagtttggaaatatcctcatcctcagtggggatgtta 19332781



 Score =  311 bits (157), Expect = 5e-82
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                            
Query: 617      atttggcggaaagtgatttggcatacacccgggccatcatgggcagcggcaaagaagatt 676
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19333710 atttggcggaaagtgatttggcatacacccgggccatcatgggcagcggcaaagaagatt 19333769

                                                                            
Query: 677      acactggcaaagatgtactgattctgggaggtggagatgggggcatattatgtgaaatag 736
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19333770 acactggcaaagatgtactgattctgggaggtggagatgggggcatattatgtgaaatag 19333829

                                                     
Query: 737      tcaaactaaaaccaaagatggtcactatggtagagat 773
                |||||||||||||||||||||||||||||||||||||
Sbjct: 19333830 tcaaactaaaaccaaagatggtcactatggtagagat 19333866



 Score =  244 bits (123), Expect = 1e-61
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                            
Query: 162      agctgatggtgagaccattctgaaaggcctccagtccattttccaggagcaggggatgac 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19324466 agctgatggtgagaccattctgaaaggcctccagtccattttccaggagcaggggatgac 19324525

                                                                            
Query: 222      agagtcggtgcacacctggcaggatcatggctatttagcgacctacatcaacaaaaacgg 281
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19324526 agagtcggtgcacacctggcaggatcatggctatttagcgacctacatcaacaaaaacgg 19324585

                   
Query: 282      cag 284
                |||
Sbjct: 19324586 cag 19324588



 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 860      aggttctaatagaagactgcattccagtactgaagaggtacgccaaagaagggagagagt 919
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19344526 aggttctaatagaagactgcattccagtactgaagaggtacgccaaagaagggagagagt 19344585

                                                                         
Query: 920      ttgattatgtgattaatgatttgacagccgttccaatctccacatctccggaagaag 976
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19344586 ttgattatgtgattaatgatttgacagccgttccaatctccacatctccggaagaag 19344642



 Score =  204 bits (103), Expect = 8e-50
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1055     aggggaactgtgtcaatttgacggaggccctgtcactctatgaagaacagctggggcgcc 1114
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19351773 aggggaactgtgtcaatttgacggaggccctgtcactctatgaagaacagctggggcgcc 19351832

                                                           
Query: 1115     tgtattgtcctgtggaattctcgaaggagatcgtctgtgtccc 1157
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19351833 tgtattgtcctgtggaattctcgaaggagatcgtctgtgtccc 19351875



 Score =  184 bits (93), Expect = 8e-44
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                            
Query: 283      agctttgccaatttgagaatttatccacatggattggtgttgctggaccttcagagttac 342
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19326726 agctttgccaatttgagaatttatccacatggattggtgttgctggaccttcagagttac 19326785

                                                 
Query: 343      gacggtgatgcacaaggcaaagaagttgacagt 375
                |||||||||||||||||||||||||||||||||
Sbjct: 19326786 gacggtgatgcacaaggcaaagaagttgacagt 19326818



 Score =  182 bits (92), Expect = 3e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                            
Query: 772      attgaccaaatggtgattgacggatgtaagaaatacatgagaaaaacgtgtggtgacgtc 831
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19334301 attgaccaaatggtgattgacggatgtaagaaatacatgagaaaaacgtgtggtgacgtc 19334360

                                                
Query: 832      ttagacaatcttaaaggagactgctatcaggt 863
                ||||||||||||||||||||||||||||||||
Sbjct: 19334361 ttagacaatcttaaaggagactgctatcaggt 19334392



 Score =  135 bits (68), Expect = 6e-29
 Identities = 82/84 (97%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                            
Query: 975      agattccacgtgggagtttctcagactgattcttgaccttctca-tgaaagtattgaaac 1033
                ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 19345862 agattccacgtgggagtttctcagactgattcttgacct-ctcaatgaaagtattgaaac 19345920

                                        
Query: 1034     aggatggaaaatattttacacagg 1057
                ||||||||||||||||||||||||
Sbjct: 19345921 aggatggaaaatattttacacagg 19345944



 Score =  129 bits (65), Expect = 4e-27
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                            
Query: 376      cttttgaacaaagtagaagaaagaatgaaagaactgagtcaggacagtactgagcgagtg 435
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19327331 cttttgaacaaagtagaagaaagaatgaaagaactgagtcaggacagtactgagcgagtg 19327390

                     
Query: 436      aagcg 440
                |||||
Sbjct: 19327391 aagcg 19327395



 Score =  125 bits (63), Expect = 6e-26
 Identities = 76/81 (93%)
 Strand = Plus / Plus

                                                                            
Query: 1176     ggtattttacactgttggnaaagaagctaaaccttgnaaatcagtttccccaatcacgtg 1235
                |||||||||||||||| | ||  ||||||||||||| |||||||||||||||||||||||
Sbjct: 19353308 ggtattttacactgtttggaagaaagctaaaccttgaaaatcagtttccccaatcacgtg 19353367

                                     
Query: 1236     tgctgcaaatagccttcctga 1256
                |||||||||||||||||||||
Sbjct: 19353368 tgctgcaaatagccttcctga 19353388


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,886,238
Number of extensions: 259
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 18
Length of query: 1256
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1235
Effective length of database: 2,808,413,156
Effective search space: 3468390247660
Effective search space used: 3468390247660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)