Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003233
(1256 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030548.1| spermine synthase [Bos taurus]. 660 0.0
>ref|NP_001030548.1| spermine synthase [Bos taurus].
Length = 365
Score = 660 bits (1702), Expect = 0.0
Identities = 332/365 (90%), Positives = 334/365 (91%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN
Sbjct: 1 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID
Sbjct: 61 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 120
Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
RYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI
Sbjct: 121 RYWPTADGRLVEYDIDKVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 180
Query: 655 MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
MGSGKEDY+GKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 181 MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 240
Query: 835 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 1014
DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL
Sbjct: 241 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 300
Query: 1015 LMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTVG 1194
MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP L VFYTV
Sbjct: 301 SMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVW 360
Query: 1195 KEAKP 1209
K+AKP
Sbjct: 361 KKAKP 365
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,859,289
Number of extensions: 1078422
Number of successful extensions: 3376
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3374
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 313
Effective length of database: 14,207,134
Effective search space: 4446832942
Effective search space used: 4446832942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003233
(1256 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849539.1| PREDICTED: similar to spermine synthase isoform... 530 e-151
Alignment gi|XP_859139.1| PREDICTED: similar to spermine synthase isoform... 511 e-145
Alignment gi|XP_537978.2| PREDICTED: similar to spermine synthase isoform... 466 e-131
Alignment gi|XP_859101.1| PREDICTED: similar to spermine synthase isoform... 437 e-122
Alignment gi|XP_534157.1| PREDICTED: similar to spermine synthase [Canis ... 275 7e-74
Alignment gi|XP_853586.1| PREDICTED: similar to spermine synthase [Canis ... 231 8e-61
Alignment gi|XP_853122.1| PREDICTED: similar to spermine synthase [Canis ... 194 2e-49
Alignment gi|XP_853131.1| PREDICTED: similar to Spermine synthase (Spermi... 183 3e-46
>ref|XP_849539.1| PREDICTED: similar to spermine synthase isoform 2 [Canis familiaris].
Length = 313
Score = 530 bits (1366), Expect = e-151
Identities = 277/365 (75%), Positives = 281/365 (76%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDF LGA+ADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNG
Sbjct: 1 MAAARHSTLDFKLGARADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNG---- 56
Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
RLPPIVRGGAID
Sbjct: 57 ------------------------------------------------RLPPIVRGGAID 68
Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
RYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYT+AI
Sbjct: 69 RYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTQAI 128
Query: 655 MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
MGSGKEDY+GKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 129 MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 188
Query: 835 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 1014
DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL
Sbjct: 189 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL 248
Query: 1015 LMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTVG 1194
MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP L VFYTV
Sbjct: 249 SMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVW 308
Query: 1195 KEAKP 1209
K+AKP
Sbjct: 309 KKAKP 313
>ref|XP_859139.1| PREDICTED: similar to spermine synthase isoform 4 [Canis
familiaris].
Length = 311
Score = 511 bits (1315), Expect = e-145
Identities = 256/287 (89%), Positives = 261/287 (90%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDF LGA+ADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN
Sbjct: 1 MAAARHSTLDFKLGARADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
LRIYPHGLVLLDLQSYDGD+QG+EVDSLLNKVEERMKELSQDST RVKRLPPIVRGGAID
Sbjct: 61 LRIYPHGLVLLDLQSYDGDSQGQEVDSLLNKVEERMKELSQDSTGRVKRLPPIVRGGAID 120
Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
RYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYT+AI
Sbjct: 121 RYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTQAI 180
Query: 655 MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
MGSGKEDY+GKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 181 MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 240
Query: 835 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE 975
DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE
Sbjct: 241 DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE 287
>ref|XP_537978.2| PREDICTED: similar to spermine synthase isoform 1 [Canis familiaris].
Length = 270
Score = 466 bits (1199), Expect = e-131
Identities = 235/270 (87%), Positives = 238/270 (88%)
Frame = +1
Query: 400 MKELSQDSTERVKRLPPIVRGGAIDRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSK 579
MKELSQDST RVKRLPPIVRGGAIDRYWPTADGRL SPYQNIKILHSK
Sbjct: 1 MKELSQDSTGRVKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSK 60
Query: 580 QFGNILILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMV 759
QFGNILILSGDVNLAESDLAYT+AIMGSGKEDY+GKDV CEIVKLKPKMV
Sbjct: 61 QFGNILILSGDVNLAESDLAYTQAIMGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMV 120
Query: 760 TMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVIND 939
TMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVIND
Sbjct: 121 TMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVIND 180
Query: 940 LTAVPISTSPEEDSTWEFLRLILDLLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY 1119
LTAVPISTSPEEDSTWEFLRLILDL MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY
Sbjct: 181 LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY 240
Query: 1120 CPVEFSKEIVCVPXILXFVVFYTVGKEAKP 1209
CPVEFSKEIVCVP L VFYTV K+AKP
Sbjct: 241 CPVEFSKEIVCVPSYLELWVFYTVWKKAKP 270
>ref|XP_859101.1| PREDICTED: similar to spermine synthase isoform 3 [Canis
familiaris].
Length = 257
Score = 437 bits (1123), Expect = e-122
Identities = 218/250 (87%), Positives = 224/250 (89%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDF LGA+ADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN
Sbjct: 1 MAAARHSTLDFKLGARADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
LRIYPHGLVLLDLQSYDGD+QG+EVDSLLNKVEERMKELSQDST RVKRLPPIVRGGAID
Sbjct: 61 LRIYPHGLVLLDLQSYDGDSQGQEVDSLLNKVEERMKELSQDSTGRVKRLPPIVRGGAID 120
Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
RYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYT+AI
Sbjct: 121 RYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTQAI 180
Query: 655 MGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 834
MGSGKEDY+GKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL
Sbjct: 181 MGSGKEDYSGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 240
Query: 835 DNLKGDCYQV 864
DNLKGDCYQ+
Sbjct: 241 DNLKGDCYQI 250
>ref|XP_534157.1| PREDICTED: similar to spermine synthase [Canis familiaris].
Length = 152
Score = 275 bits (703), Expect = 7e-74
Identities = 135/152 (88%), Positives = 141/152 (92%)
Frame = +1
Query: 754 MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVI 933
MVTMVEIDQMVIDGCKKYMRKT GDVLD+LKGDCYQVLIEDCIPVL RYA++ REFDYVI
Sbjct: 1 MVTMVEIDQMVIDGCKKYMRKTWGDVLDDLKGDCYQVLIEDCIPVLGRYAEQRREFDYVI 60
Query: 934 NDLTAVPISTSPEEDSTWEFLRLILDLLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGR 1113
NDLTAVPISTSPEEDSTWEFLRLILDL M+VLKQDG+YFTQGNC NLTEALSLYEEQLGR
Sbjct: 61 NDLTAVPISTSPEEDSTWEFLRLILDLSMRVLKQDGEYFTQGNCANLTEALSLYEEQLGR 120
Query: 1114 LYCPVEFSKEIVCVPXILXFVVFYTVGKEAKP 1209
LYCPVEFSKEIVCVP L VFYTV K+AKP
Sbjct: 121 LYCPVEFSKEIVCVPSYLELWVFYTVWKKAKP 152
>ref|XP_853586.1| PREDICTED: similar to spermine synthase [Canis familiaris].
Length = 132
Score = 231 bits (590), Expect = 8e-61
Identities = 111/130 (85%), Positives = 120/130 (92%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAAR STLDF LGA+ADGETILKGL+S+FQEQGMTESVHTW DHGYLATY+NKNG FAN
Sbjct: 1 MAAARRSTLDFQLGARADGETILKGLRSVFQEQGMTESVHTWPDHGYLATYVNKNGGFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
LRIYP GLVLLDLQS DGD+QG+EVDSLLNKVEE +KELS+D T RVKRLPPIVRGGA+D
Sbjct: 61 LRIYPRGLVLLDLQSCDGDSQGQEVDSLLNKVEEGLKELSEDGTGRVKRLPPIVRGGAVD 120
Query: 475 RYWPTADGRL 504
RYWP ADGRL
Sbjct: 121 RYWPAADGRL 130
>ref|XP_853122.1| PREDICTED: similar to spermine synthase [Canis familiaris].
Length = 110
Score = 194 bits (492), Expect = 2e-49
Identities = 96/101 (95%), Positives = 97/101 (96%)
Frame = +1
Query: 754 MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVI 933
MVTMVEIDQMVID KKYMRKTCGDVL+NLKGD YQVLIEDCIPVLKRYAKEGREFDYVI
Sbjct: 1 MVTMVEIDQMVIDEYKKYMRKTCGDVLNNLKGDSYQVLIEDCIPVLKRYAKEGREFDYVI 60
Query: 934 NDLTAVPISTSPEEDSTWEFLRLILDLLMKVLKQDGKYFTQ 1056
NDLTAVPISTSPEEDSTWEFLRLILDL MKVLKQDGKYFTQ
Sbjct: 61 NDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 101
>ref|XP_853131.1| PREDICTED: similar to Spermine synthase (Spermidine
aminopropyltransferase) (SPMSY) [Canis familiaris].
Length = 156
Score = 183 bits (465), Expect = 3e-46
Identities = 109/193 (56%), Positives = 117/193 (60%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHS LDF LGA+ADGETILKGLQ IFQEQGMTE V+ T KN
Sbjct: 1 MAAARHSMLDFKLGARADGETILKGLQFIFQEQGMTELVY---------TCRRKN----- 46
Query: 295 LRIYPHGLVLLDLQSYDGDAQGKEVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAID 474
+ LSQDSTERVK+LPPI+RGGAID
Sbjct: 47 ------------------------------------ERLSQDSTERVKQLPPILRGGAID 70
Query: 475 RYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAI 654
RYWPTA GRL SPYQN KILHSKQFG ILILSGDVNLAESDLA+T+ I
Sbjct: 71 RYWPTAHGRLVEYDIDEVVYDEDSPYQNTKILHSKQFGYILILSGDVNLAESDLAFTQDI 130
Query: 655 MGSGKEDYTGKDV 693
GSGKEDY+GKDV
Sbjct: 131 KGSGKEDYSGKDV 143
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,757,057
Number of extensions: 1108154
Number of successful extensions: 3373
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3372
Number of HSP's successfully gapped: 10
Length of query: 418
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 313
Effective length of database: 15,374,224
Effective search space: 4812132112
Effective search space used: 4812132112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003233
(1256 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004586.2| spermine synthase [Homo sapiens]. 649 0.0
>ref|NP_004586.2| spermine synthase [Homo sapiens].
Length = 366
Score = 649 bits (1674), Expect = 0.0
Identities = 328/366 (89%), Positives = 331/366 (90%), Gaps = 1/366 (0%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGM ESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMAESVHTWQDHGYLATYTNKNGSFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGKE-VDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
LRIYPHGLVLLDLQSYDGDAQGKE +DS+LNKVEERMKELSQDST RVKRLPPIVRGGAI
Sbjct: 61 LRIYPHGLVLLDLQSYDGDAQGKEEIDSILNKVEERMKELSQDSTGRVKRLPPIVRGGAI 120
Query: 472 DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
DRYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121 DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180
Query: 652 IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
IMGSGKEDYTGKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV
Sbjct: 181 IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 240
Query: 832 LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD
Sbjct: 241 LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 300
Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP L VFYTV
Sbjct: 301 LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360
Query: 1192 GKEAKP 1209
K+AKP
Sbjct: 361 WKKAKP 366
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,011,121
Number of extensions: 1099542
Number of successful extensions: 3277
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3273
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 313
Effective length of database: 14,835,944
Effective search space: 4643650472
Effective search space used: 4643650472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003233
(1256 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033240.3| spermine synthase [Mus musculus]. 635 0.0
Alignment gi|XP_001473484.1| PREDICTED: spermine synthase-like [Mus muscu... 635 0.0
Alignment gi|XP_001473196.1| PREDICTED: spermine synthase-like [Mus muscu... 635 0.0
>ref|NP_033240.3| spermine synthase [Mus musculus].
Length = 366
Score = 635 bits (1638), Expect = 0.0
Identities = 320/366 (87%), Positives = 326/366 (89%), Gaps = 1/366 (0%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDF LGAKADGE ILKGLQSIFQEQGMTESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1 MAAARHSTLDFKLGAKADGEAILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGK-EVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
LRIYPHGLVLLDLQSYD D QGK E DSLLNK+EE+MKELSQDST RVKRLPPIVRGGAI
Sbjct: 61 LRIYPHGLVLLDLQSYDSDVQGKQETDSLLNKIEEKMKELSQDSTGRVKRLPPIVRGGAI 120
Query: 472 DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
DRYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121 DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180
Query: 652 IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
IMGSGKEDYTGKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMR+TCGDV
Sbjct: 181 IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRRTCGDV 240
Query: 832 LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
LDNL+GDCYQVLIEDCIPVLK YAKEGREFDYVINDLTAVPISTSPEEDSTW+FLRLILD
Sbjct: 241 LDNLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAVPISTSPEEDSTWDFLRLILD 300
Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP L VFYTV
Sbjct: 301 LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360
Query: 1192 GKEAKP 1209
K+AKP
Sbjct: 361 WKKAKP 366
>ref|XP_001473484.1| PREDICTED: spermine synthase-like [Mus musculus].
Length = 366
Score = 635 bits (1638), Expect = 0.0
Identities = 320/366 (87%), Positives = 326/366 (89%), Gaps = 1/366 (0%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDF LGAKADGE ILKGLQSIFQEQGMTESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1 MAAARHSTLDFKLGAKADGEAILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGK-EVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
LRIYPHGLVLLDLQSYD D QGK E DSLLNK+EE+MKELSQDST RVKRLPPIVRGGAI
Sbjct: 61 LRIYPHGLVLLDLQSYDSDVQGKQETDSLLNKIEEKMKELSQDSTGRVKRLPPIVRGGAI 120
Query: 472 DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
DRYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121 DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180
Query: 652 IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
IMGSGKEDYTGKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMR+TCGDV
Sbjct: 181 IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRRTCGDV 240
Query: 832 LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
LDNL+GDCYQVLIEDCIPVLK YAKEGREFDYVINDLTAVPISTSPEEDSTW+FLRLILD
Sbjct: 241 LDNLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAVPISTSPEEDSTWDFLRLILD 300
Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP L VFYTV
Sbjct: 301 LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360
Query: 1192 GKEAKP 1209
K+AKP
Sbjct: 361 WKKAKP 366
>ref|XP_001473196.1| PREDICTED: spermine synthase-like [Mus musculus].
Length = 366
Score = 635 bits (1638), Expect = 0.0
Identities = 320/366 (87%), Positives = 326/366 (89%), Gaps = 1/366 (0%)
Frame = +1
Query: 115 MAAARHSTLDFMLGAKADGETILKGLQSIFQEQGMTESVHTWQDHGYLATYINKNGSFAN 294
MAAARHSTLDF LGAKADGE ILKGLQSIFQEQGMTESVHTWQDHGYLATY NKNGSFAN
Sbjct: 1 MAAARHSTLDFKLGAKADGEAILKGLQSIFQEQGMTESVHTWQDHGYLATYTNKNGSFAN 60
Query: 295 LRIYPHGLVLLDLQSYDGDAQGK-EVDSLLNKVEERMKELSQDSTERVKRLPPIVRGGAI 471
LRIYPHGLVLLDLQSYD D QGK E DSLLNK+EE+MKELSQDST RVKRLPPIVRGGAI
Sbjct: 61 LRIYPHGLVLLDLQSYDSDVQGKQETDSLLNKIEEKMKELSQDSTGRVKRLPPIVRGGAI 120
Query: 472 DRYWPTADGRLXXXXXXXXXXXXXSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 651
DRYWPTADGRL SPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA
Sbjct: 121 DRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRA 180
Query: 652 IMGSGKEDYTGKDVXXXXXXXXXXXCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV 831
IMGSGKEDYTGKDV CEIVKLKPKMVTMVEIDQMVIDGCKKYMR+TCGDV
Sbjct: 181 IMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRRTCGDV 240
Query: 832 LDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILD 1011
LDNL+GDCYQVLIEDCIPVLK YAKEGREFDYVINDLTAVPISTSPEEDSTW+FLRLILD
Sbjct: 241 LDNLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAVPISTSPEEDSTWDFLRLILD 300
Query: 1012 LLMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPXILXFVVFYTV 1191
L MKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVP L VFYTV
Sbjct: 301 LSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 360
Query: 1192 GKEAKP 1209
K+AKP
Sbjct: 361 WKKAKP 366
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,315,047
Number of extensions: 935027
Number of successful extensions: 2757
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2750
Number of HSP's successfully gapped: 3
Length of query: 418
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 314
Effective length of database: 12,493,815
Effective search space: 3923057910
Effective search space used: 3923057910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003233
(1256 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,186,374
Number of extensions: 690716
Number of successful extensions: 2149
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2149
Number of HSP's successfully gapped: 0
Length of query: 418
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 316
Effective length of database: 8,804,438
Effective search space: 2782202408
Effective search space used: 2782202408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003233
(1256 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 846 0.0
Sscrofa_Chr16 601 e-169
Sscrofa_ChrX 351 6e-94
>Sscrofa_Chr11
|| Length = 87690581
Score = 846 bits (427), Expect = 0.0
Identities = 996/1170 (85%), Gaps = 34/1170 (2%)
Strand = Plus / Plus
Query: 104 ctcgcctcactatggcagcagcacggcacagcacgctcgacttcatgctcggcgccaaag 163
|||||||| ||| |||||||||| || |||||| ||| ||||||||||| | |||| |
Sbjct: 64227592 ctcgcctccctacagcagcagcactgcccagcaccctcaacttcatgctctgtgccagcg 64227651
Query: 164 ctgatggtgagaccattctgaaaggcctccagtccattttccaggagcaggggatgacag 223
||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 64227652 ctgatggcaagaccattctgaaaggcctccaatccattttgcaggagcaggggatgacag 64227711
Query: 224 agtcggtgcacacctggcaggatcatggctatttagcgacctacatcaacaaaaac--gg 281
|||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||
Sbjct: 64227712 agtcagtgcacacctggcaggaccatggctatttagtgacctacataaacaaaaaaatgg 64227771
Query: 282 cagctttgccaatttgagaattta-tccacatggattggtgttgctggaccttcagagtt 340
|||||||| |||| | |||||||| | |||| |||||||| ||||||||||||||||||
Sbjct: 64227772 cagctttgtcaatataagaatttaatgcaca--gattggtgatgctggaccttcagagtt 64227829
Query: 341 acgacggtgatgcacaaggcaaagaagttgacagtcttttgaacaaagtagaagaaagaa 400
| || | |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 64227830 atgatgatgatgcacaaggcaaagaggttgatagtcttttgaacaaagtagaagaaagaa 64227889
Query: 401 tgaaagaactgagtcaggacagtactgagcgagtgaagcgattaccacccatcgttcgag 460
||||||| ||||||||||||||||||||| |||||| | |||||| ||| ||| |||
Sbjct: 64227890 ggaaagaattgagtcaggacagtactgagcagatgaagccactaccactcatagtttgag 64227949
Query: 461 gaggggccatcgacagatactggcccactgccgatggccgcctggtggagtacgacatag 520
|| ||| |||| |||| |||||| |||| ||||| ||| |||||||||| || |||||||
Sbjct: 64227950 gaagggtcatccacagctactggaccacagccgacggctgcctggtggaatatgacatag 64228009
Query: 521 atgaggtggtatatgatgaagactcgccttaccagaacattaaaattttacactcgaaac 580
||||||| ||||||||||| |||| |||||| ||| |||| |||||||||| ||||||
Sbjct: 64228010 atgaggttgtatatgatgagcactcaccttacaagagcattcaaattttacatgcgaaac 64228069
Query: 581 agtttggaaatatcctcatcctcagtggggatgttaatttggcggaaagtgatttggcat 640
|||||||||| || ||| |||||||| |||||||||||||||||||| || || | ||
Sbjct: 64228070 agtttggaaacattctcttcctcagtagggatgttaatttggcggaacgtaatgt-taat 64228128
Query: 641 acacccgggccatcatgggcagcggcaaagaagattacactggcaaagatgtactgattc 700
| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 64228129 cttctttg--ttgcatgggcagtggcaaagaagattacactggcaaagatgtactgattc 64228186
Query: 701 tgggaggtggagatgggggcatattatgtgaaatagtcaaactaaaaccaaagatggtca 760
| ||| ||| |||||||||| |||||||| ||||||||| |||| |||||||||||
Sbjct: 64228187 tatgag--agagctgggggcatagtatgtgaa--agtcaaactgaaactaaagatggtca 64228242
Query: 761 ctatggtagagattgaccaaatggtgattgacggatgtaagaaatacatgagaaaaacgt 820
||| ||||||||||||||||| ||||| ||| ||||||||||||||||| | ||||||
Sbjct: 64228243 ctagggtagagattgaccaaagggtgactgatagatgtaagaaatacatgcaagaaacgt 64228302
Query: 821 gtggtgacgtcttagacaatcttaaaggagactgctat----------caggttctaata 870
|| |||| |||||||| |||||||||||| ||||| | |||||||||||
Sbjct: 64228303 gtcatgacctcttagaccatcttaaaggaggctgctctagaacatggctaggttctaata 64228362
Query: 871 gaagactgcattccagtactgaagaggtacgccaaagaagggagagagtttgattatgtg 930
||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct: 64228363 aaagactg-attccagtactgaagaggtacgccagagaagggagagaatttgattacgtg 64228421
Query: 931 attaatgatttgacagccgttccaatctccacatctccggaagaagattccacgtgg--g 988
|||| ||||| ||| ||| |||| |||| |||||| ||||||| |||||| ||| |
Sbjct: 64228422 attagtgattcgacggccattcccatct---catctcgggaagaatattccatatgggag 64228478
Query: 989 agtttctcagactgattcttgaccttctc-atgaaagtattgaaacaggatggaaaatat 1047
|||| ||||| ||||||||||||| |||| ||||||||| |||| |||||||| ||| ||
Sbjct: 64228479 agttcctcagtctgattcttgacc-tctcaatgaaagtactgaagcaggatgggaaa-at 64228536
Query: 1048 tttacacaggggaactgtgtcaatttgacggaggccctgtcactctatgaagaacagctg 1107
||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 64228537 tttacacaggggagctgtgtcaatttgaggaaagccctgtcactctatgaagaacagctg 64228596
Query: 1108 gggcgcctgtattgtcctgtggaattctcgaaggagatcgtctgtgtccccntcatactg 1167
||| |||||||||||||||||||||| || ||||||||| ||||||| ||| |||||||
Sbjct: 64228597 gggtgcctgtattgtcctgtggaattttcaaaggagatcttctgtgt-cccttcatactt 64228655
Query: 1168 gnatttgt-ggtattttacactgttggnaaagaagctaaaccttgnaaatcagtttcccc 1226
| | |||| |||||||||| |||| | || ||||||| ||||| ||||||||||||||
Sbjct: 64228656 ggaattgtgggtattttacggtgtttggaagaaagctaagccttgaaaatcagtttcccc 64228715
Query: 1227 -aatcacgtgtgctgcaaatagccttcctg 1255
|||| |||||||||||||||||||||||
Sbjct: 64228716 tgatcaagtgtgctgcaaatagccttcctg 64228745
>Sscrofa_Chr16
|| Length = 86898991
Score = 601 bits (303), Expect = e-169
Identities = 605/695 (87%), Gaps = 24/695 (3%)
Strand = Plus / Plus
Query: 565 attttacactcgaaacagtttggaaatatcctcatcctcagtggggatgttaatttggcg 624
||||||||||| |||||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 74164336 attttacactcagaacagtttggaaatgttcctatcctcagtgaggatgttaatttggca 74164395
Query: 625 gaaagtgatttggcatacacccgggccatcatgggcagcggcaaagaagattacactggc 684
|||||||||||||| || | || |||||||||||||| |||||||| ||||||||||
Sbjct: 74164396 gaaagtgatttggcgtatatccatgccatcatgggcagtggcaaaga---ttacactggc 74164452
Query: 685 aaagatgtactgattctgggaggtggagatgggggcatattatgtgaaatagtcaaacta 744
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct: 74164453 caagatgtactgattctgggaggtggacatgggggcatattatgt-aaatagtcaagatg 74164511
Query: 745 aaaccaaagatggtcactatggtagagattgaccaaatggtgattgacggatgtaagaaa 804
|||||||||||||||||||||||||| | ||| |||||||||||||| || ||||||||
Sbjct: 74164512 aaaccaaagatggtcactatggtagacagcgac-aaatggtgattgacagaggtaagaaa 74164570
Query: 805 tacatgagaaaaacgtgtggtgacgtcttagacaatcttaaaggagactgctatcaggtt 864
|| ||||||||| | |||||||| ||||||||||||||||||||| ||||
Sbjct: 74164571 cacctgagaaaaaaaaga-------tcttagacgatcttaaaggagactgctatcgggtt 74164623
Query: 865 ctaatagaagactgcattccagtactgaagaggtacgccaaagaagggagagagtttgat 924
|||||| |||||| |||||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 74164624 ctaatattagactgtattccagttctgaagaactatgccaaagaagggagagagtttgat 74164683
Query: 925 tatgtgattaatgatttgacagccgttccaatctccacatctccggaagaagattccacg 984
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct: 74164684 tatgtgattaatgatttgacagctgttccaatcgccacatctccacaagaagattccaca 74164743
Query: 985 tgggagtttctcagactgattcttgaccttctc-atgaaagtattgaaacaggatggaaa 1043
|||||||||||| | |||||||||||| |||| ||||||||||| ||||||||||| ||
Sbjct: 74164744 tgggagtttctc--attgattcttgacc-tctcaatgaaagtattaaaacaggatgggaa 74164800
Query: 1044 atattttacacaggggaactgtgtcaatttgacggaggccctgtcactctatgaagaaca 1103
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct: 74164801 atattt--cacaggggaactgtgtcaatttgacggaagctctgtcactctatgaagaata 74164858
Query: 1104 gctggggcgcctgtattgtcctgtggaattctcgaaggagatcgtctgtgtccccntcat 1163
|||||||| |||||||||||||||||||||||||| ||||| ||||||| ||| ||||
Sbjct: 74164859 gctggggcacctgtattgtcctgtggaattctcga---agatcatctgtgt-cccttcat 74164914
Query: 1164 actggnatttgt-ggtattttacactgttggnaaagaagctaaaccttgnaaatcagttt 1222
| | | | ||| |||||||||||||||| | || ||||| ||||||| ||||||||||
Sbjct: 74164915 atttggaactgtgggtattttacactgtttggaagaaagctcaaccttgaaaatcagttt 74164974
Query: 1223 ccc-caatcacgtgtgctgcaaatagccttcctga 1256
||| |||||||||||||||||| |||||||||||
Sbjct: 74164975 cccataatcacgtgtgctgcaaagagccttcctga 74165009
Score = 258 bits (130), Expect = 7e-66
Identities = 263/312 (84%), Gaps = 19/312 (6%)
Strand = Plus / Plus
Query: 88 aggcatggcacagggcctcgcctcactatggcagcagcacggcacagcacgctcgacttc 147
||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 74163855 aggcatggcacaggggctcgcctcactatggcagcagcacagcacagcaccctcgacttc 74163914
Query: 148 atgctcggcgccaaagctgatggtgagaccattctgaaaggcctccagtccattttccag 207
| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 74163915 acgcttggcgccaaagctgatggcaagaccattctgaaaggcctccagtccattctccaa 74163974
Query: 208 gagcaggggatgacagagtcggtgcacacctggcaggatcatggctatttagcgacctac 267
|||||||||||||||||||| | ||| ||||||| |||| ||
Sbjct: 74163975 gagcaggggatgacagagtcag-------------------tgggtatttagtgaccaac 74164015
Query: 268 atcaacaaaaacggcagctttgccaatttgagaatttatccacatggattggtgttgctg 327
||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||| |
Sbjct: 74164016 atcaacaaaaatagcacgttcgccaatttgagaatttagccacatggattggtgttgccg 74164075
Query: 328 gaccttcagagttacgacggtgatgcacaaggcaaagaagttgacagtcttttgaacaaa 387
||||||| | |||||||| || ||| ||||||||||| | ||||| ||||||||||||
Sbjct: 74164076 gaccttcggggttacgacagtaatgtgcaaggcaaagaggccgacaggcttttgaacaaa 74164135
Query: 388 gtagaagaaaga 399
||||||||||||
Sbjct: 74164136 gtagaagaaaga 74164147
>Sscrofa_ChrX
|| Length = 144288218
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 440 gattaccacccatcgttcgaggaggggccatcgacagatactggcccactgccgatggcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332605 gattaccacccatcgttcgaggaggggccatcgacagatactggcccactgccgatggcc 19332664
Query: 500 gcctggtggagtacgacatagatgaggtggtatatgatgaagactcgccttaccagaaca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332665 gcctggtggagtacgacatagatgaggtggtatatgatgaagactcgccttaccagaaca 19332724
Query: 560 ttaaaattttacactcgaaacagtttggaaatatcctcatcctcagtggggatgtta 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19332725 ttaaaattttacactcgaaacagtttggaaatatcctcatcctcagtggggatgtta 19332781
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 617 atttggcggaaagtgatttggcatacacccgggccatcatgggcagcggcaaagaagatt 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19333710 atttggcggaaagtgatttggcatacacccgggccatcatgggcagcggcaaagaagatt 19333769
Query: 677 acactggcaaagatgtactgattctgggaggtggagatgggggcatattatgtgaaatag 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19333770 acactggcaaagatgtactgattctgggaggtggagatgggggcatattatgtgaaatag 19333829
Query: 737 tcaaactaaaaccaaagatggtcactatggtagagat 773
|||||||||||||||||||||||||||||||||||||
Sbjct: 19333830 tcaaactaaaaccaaagatggtcactatggtagagat 19333866
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 162 agctgatggtgagaccattctgaaaggcctccagtccattttccaggagcaggggatgac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19324466 agctgatggtgagaccattctgaaaggcctccagtccattttccaggagcaggggatgac 19324525
Query: 222 agagtcggtgcacacctggcaggatcatggctatttagcgacctacatcaacaaaaacgg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19324526 agagtcggtgcacacctggcaggatcatggctatttagcgacctacatcaacaaaaacgg 19324585
Query: 282 cag 284
|||
Sbjct: 19324586 cag 19324588
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 860 aggttctaatagaagactgcattccagtactgaagaggtacgccaaagaagggagagagt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19344526 aggttctaatagaagactgcattccagtactgaagaggtacgccaaagaagggagagagt 19344585
Query: 920 ttgattatgtgattaatgatttgacagccgttccaatctccacatctccggaagaag 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19344586 ttgattatgtgattaatgatttgacagccgttccaatctccacatctccggaagaag 19344642
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1055 aggggaactgtgtcaatttgacggaggccctgtcactctatgaagaacagctggggcgcc 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19351773 aggggaactgtgtcaatttgacggaggccctgtcactctatgaagaacagctggggcgcc 19351832
Query: 1115 tgtattgtcctgtggaattctcgaaggagatcgtctgtgtccc 1157
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19351833 tgtattgtcctgtggaattctcgaaggagatcgtctgtgtccc 19351875
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 283 agctttgccaatttgagaatttatccacatggattggtgttgctggaccttcagagttac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19326726 agctttgccaatttgagaatttatccacatggattggtgttgctggaccttcagagttac 19326785
Query: 343 gacggtgatgcacaaggcaaagaagttgacagt 375
|||||||||||||||||||||||||||||||||
Sbjct: 19326786 gacggtgatgcacaaggcaaagaagttgacagt 19326818
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 772 attgaccaaatggtgattgacggatgtaagaaatacatgagaaaaacgtgtggtgacgtc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19334301 attgaccaaatggtgattgacggatgtaagaaatacatgagaaaaacgtgtggtgacgtc 19334360
Query: 832 ttagacaatcttaaaggagactgctatcaggt 863
||||||||||||||||||||||||||||||||
Sbjct: 19334361 ttagacaatcttaaaggagactgctatcaggt 19334392
Score = 135 bits (68), Expect = 6e-29
Identities = 82/84 (97%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 975 agattccacgtgggagtttctcagactgattcttgaccttctca-tgaaagtattgaaac 1033
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 19345862 agattccacgtgggagtttctcagactgattcttgacct-ctcaatgaaagtattgaaac 19345920
Query: 1034 aggatggaaaatattttacacagg 1057
||||||||||||||||||||||||
Sbjct: 19345921 aggatggaaaatattttacacagg 19345944
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 376 cttttgaacaaagtagaagaaagaatgaaagaactgagtcaggacagtactgagcgagtg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19327331 cttttgaacaaagtagaagaaagaatgaaagaactgagtcaggacagtactgagcgagtg 19327390
Query: 436 aagcg 440
|||||
Sbjct: 19327391 aagcg 19327395
Score = 125 bits (63), Expect = 6e-26
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1176 ggtattttacactgttggnaaagaagctaaaccttgnaaatcagtttccccaatcacgtg 1235
|||||||||||||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct: 19353308 ggtattttacactgtttggaagaaagctaaaccttgaaaatcagtttccccaatcacgtg 19353367
Query: 1236 tgctgcaaatagccttcctga 1256
|||||||||||||||||||||
Sbjct: 19353368 tgctgcaaatagccttcctga 19353388
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,886,238
Number of extensions: 259
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 18
Length of query: 1256
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1235
Effective length of database: 2,808,413,156
Effective search space: 3468390247660
Effective search space used: 3468390247660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)