Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003236
(1345 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039594.1| WD repeat domain phosphoinositide-interactin... 719 0.0
Alignment gi|NP_001092510.1| WD repeat domain phosphoinositide-interactin... 467 e-131
Alignment gi|NP_001068715.1| WD repeat domain phosphoinositide-interactin... 137 2e-32
Alignment gi|NP_001069619.1| WD repeat domain phosphoinositide-interactin... 103 5e-22
Alignment gi|XP_002702297.1| PREDICTED: WD repeat domain, phosphoinositid... 59 8e-09
>ref|NP_001039594.1| WD repeat domain phosphoinositide-interacting protein 2 [Bos taurus].
Length = 436
Score = 719 bits (1856), Expect(2) = 0.0
Identities = 359/364 (98%), Positives = 362/364 (99%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+VCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNP GLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPTGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNL PQEGGECTLMKQH+LDGS
Sbjct: 301 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLDPQEGGECTLMKQHQLDGS 360
Query: 1243 METT 1254
METT
Sbjct: 361 METT 364
Score = 23.9 bits (50), Expect(2) = 0.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 1271 TSHDCPWVAQA 1303
TSHDCP V QA
Sbjct: 371 TSHDCPLVTQA 381
>ref|NP_001092510.1| WD repeat domain phosphoinositide-interacting protein 1 [Bos taurus].
Length = 446
Score = 467 bits (1201), Expect = e-131
Identities = 232/354 (65%), Positives = 287/354 (81%)
Frame = +1
Query: 181 SGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFS 360
SG A A+ F+ FNQD TSLA+G+K+GYK FSLSSV++L+ ++ DT DV IVERLFS
Sbjct: 10 SGGAEAALSCFS-FNQDCTSLAIGTKAGYKLFSLSSVEQLDHVHGSNDTPDVYIVERLFS 68
Query: 361 SSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRD 540
SSLV +VS PR++ V HFKKGTEICNYSYS ILA+RLNRQRL+VCLEES+YIHNI+D
Sbjct: 69 SSLVVVVSHTKPRQMNVYHFKKGTEICNYSYSGNILAIRLNRQRLLVCLEESIYIHNIKD 128
Query: 541 MKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSP 720
MK+L TI + P NP GLCALSIN+ N Y+AYPGS T GE+ ++D +L+ I AH+
Sbjct: 129 MKLLKTILDIPANPTGLCALSINHSNSYVAYPGSLTTGEIVLYDGHSLKPVCTIAAHEGT 188
Query: 721 LAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLS 900
LAA+AF++SG++LA+ASEKGTVIRVFS+P+GQKL+EFRRG+KR V+I SLAFSMD FL
Sbjct: 189 LAAIAFNSSGSRLASASEKGTVIRVFSVPDGQKLYEFRRGMKRYVTISSLAFSMDSQFLC 248
Query: 901 ASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVR 1080
ASSNTETVHIFKLE + EEP+TWTGY GK+ +A++SYLP+QV++M NQ RAFAT R
Sbjct: 249 ASSNTETVHIFKLEHLANSRPEEPSTWTGYMGKMFLAASSYLPTQVSDMMNQDRAFATGR 308
Query: 1081 LPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
L F GH+NIC LATIQK+PRLLV +S G+LY+YNL PQ+GG+C L+K H L GS
Sbjct: 309 LGFSGHRNICTLATIQKLPRLLVVSSSGHLYVYNLDPQDGGDCVLIKTHSLLGS 362
>ref|NP_001068715.1| WD repeat domain phosphoinositide-interacting protein 3 [Bos taurus].
Length = 344
Score = 137 bits (346), Expect = 2e-32
Identities = 108/345 (31%), Positives = 170/345 (49%), Gaps = 10/345 (2%)
Frame = +1
Query: 205 LLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVS 384
LL+A FNQD A G ++G++ ++ + + E+ E + V +E LF + +A+V
Sbjct: 13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEK-QEFLEG-GVGHIEMLFRCNYLALVG 70
Query: 385 -----LKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESL----YIHNIR 537
P K+ + K + +S + A +L R R+VV L+ + + HN
Sbjct: 71 GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAAKLRRDRIVVVLDSMIKVFTFTHNPH 130
Query: 538 DMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANM-IPAHD 714
+ V ET NP GLC L N++N LA+PG+ T G VQ+ D + + IPAH+
Sbjct: 131 QLHVF----ETCYNPKGLCVLCPNSNNSLLAFPGTHT-GHVQLVDLASTEKPPVDIPAHE 185
Query: 715 SPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMF 894
L+ +A + GT++ATASEKGT+IR+F G + E RRG + +I + F+ D
Sbjct: 186 GVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRG-SQAANIYCINFNQDASL 244
Query: 895 LSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFAT 1074
+ SS+ TVHIF E K Q +AS S+LP + F+ +F+
Sbjct: 245 ICVSSDHGTVHIFAAEDPKRNKQSS------------LASASFLP----KYFSSKWSFSK 288
Query: 1075 VRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGEC 1209
++P G ICA T + ++ +DG Y + P+ GEC
Sbjct: 289 FQVP-SGSPCICAFGT--EPNAVIAICADGSYYKFLFNPK--GEC 328
>ref|NP_001069619.1| WD repeat domain phosphoinositide-interacting protein 4 [Bos
taurus].
Length = 360
Score = 103 bits (256), Expect = 5e-22
Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 16/260 (6%)
Frame = +1
Query: 220 FNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 399
FNQD + ++G + +++ + + + + + +VE L S+L+A+V +
Sbjct: 14 FNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSMGLVEMLHRSNLLALVGGGSSP 72
Query: 400 KLKVCHF-----------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMK 546
K K + ++++ +LAVR+ ++V+ L+ +Y+++ D
Sbjct: 73 KFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLKNRIYVYSFPDNP 132
Query: 547 VLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPAH 711
+T NP GLC L + + L +PG G +Q+ D + + A I AH
Sbjct: 133 RKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINAH 191
Query: 712 DSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGM 891
S +A ++ + GT +A+AS+KGT+IR+F +KL E RRG C + FS D
Sbjct: 192 QSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYC-INFSHDSS 250
Query: 892 FLSASSNTETVHIFKLETVK 951
FL ASS+ TVHIF L+ +
Sbjct: 251 FLCASSDKGTVHIFALKDTR 270
>ref|XP_002702297.1| PREDICTED: WD repeat domain, phosphoinositide interacting 1-like [Bos
taurus].
Length = 245
Score = 59.3 bits (142), Expect = 8e-09
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +1
Query: 1123 IQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
IQK+PRLLV +S G+LY+YNL PQ+GG+C L+K H L GS
Sbjct: 122 IQKLPRLLVVSSSGHLYVYNLDPQDGGDCVLIKTHSLLGS 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,725,379
Number of extensions: 1271714
Number of successful extensions: 5178
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5086
Number of HSP's successfully gapped: 6
Length of query: 448
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 343
Effective length of database: 14,207,134
Effective search space: 4873046962
Effective search space used: 4873046962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003236
(1345 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861959.1| PREDICTED: similar to CG7986-PA, isoform A isof... 707 0.0
Alignment gi|XP_861933.1| PREDICTED: similar to CG7986-PA, isoform A isof... 707 0.0
Alignment gi|XP_850630.1| PREDICTED: similar to CG7986-PA, isoform A isof... 707 0.0
Alignment gi|XP_548021.2| PREDICTED: similar to WD40 repeat protein Inter... 459 e-129
Alignment gi|XP_537936.2| PREDICTED: similar to Wdr45 like [Canis familia... 126 4e-29
Alignment gi|XP_863889.1| PREDICTED: similar to WD repeat domain 45 isofo... 98 2e-20
Alignment gi|XP_851475.1| PREDICTED: similar to WD repeat domain 45 isofo... 98 2e-20
Alignment gi|XP_863843.1| PREDICTED: similar to WD repeat domain 45 isofo... 80 6e-15
>ref|XP_861959.1| PREDICTED: similar to CG7986-PA, isoform A isoform 3 [Canis
familiaris].
Length = 445
Score = 707 bits (1824), Expect = 0.0
Identities = 354/364 (97%), Positives = 359/364 (98%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGA QLLFANFNQD TSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+VCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNPAGLCALSI+NDN YLAYPGSATIGEVQVFDT+NLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPAGLCALSIHNDNGYLAYPGSATIGEVQVFDTMNLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
D MFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DSMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNIC+LATIQKIPRLLVGASDGYLYMYNL PQEGGECTLMKQHKLDGS
Sbjct: 301 AFATVRLPFCGHKNICSLATIQKIPRLLVGASDGYLYMYNLDPQEGGECTLMKQHKLDGS 360
Query: 1243 METT 1254
METT
Sbjct: 361 METT 364
>ref|XP_861933.1| PREDICTED: similar to CG7986-PA, isoform A isoform 2 [Canis
familiaris].
Length = 425
Score = 707 bits (1824), Expect = 0.0
Identities = 354/364 (97%), Positives = 359/364 (98%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGA QLLFANFNQD TSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+VCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNPAGLCALSI+NDN YLAYPGSATIGEVQVFDT+NLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPAGLCALSIHNDNGYLAYPGSATIGEVQVFDTMNLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
D MFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DSMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNIC+LATIQKIPRLLVGASDGYLYMYNL PQEGGECTLMKQHKLDGS
Sbjct: 301 AFATVRLPFCGHKNICSLATIQKIPRLLVGASDGYLYMYNLDPQEGGECTLMKQHKLDGS 360
Query: 1243 METT 1254
METT
Sbjct: 361 METT 364
>ref|XP_850630.1| PREDICTED: similar to CG7986-PA, isoform A isoform 1 [Canis
familiaris].
Length = 436
Score = 707 bits (1824), Expect = 0.0
Identities = 354/364 (97%), Positives = 359/364 (98%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGA QLLFANFNQD TSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+VCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNPAGLCALSI+NDN YLAYPGSATIGEVQVFDT+NLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPAGLCALSIHNDNGYLAYPGSATIGEVQVFDTMNLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
D MFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DSMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNIC+LATIQKIPRLLVGASDGYLYMYNL PQEGGECTLMKQHKLDGS
Sbjct: 301 AFATVRLPFCGHKNICSLATIQKIPRLLVGASDGYLYMYNLDPQEGGECTLMKQHKLDGS 360
Query: 1243 METT 1254
METT
Sbjct: 361 METT 364
>ref|XP_548021.2| PREDICTED: similar to WD40 repeat protein Interacting with
phosphoInositides of 49kDa [Canis familiaris].
Length = 479
Score = 459 bits (1181), Expect = e-129
Identities = 228/361 (63%), Positives = 285/361 (78%), Gaps = 1/361 (0%)
Frame = +1
Query: 172 ASQSGEAGASQLLFA-NFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVE 348
A++S G L +FNQD TSLA+G+K+GYK FSLSSV+ L+Q++ + DV IVE
Sbjct: 38 AAESPPGGVEAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEHLDQVHGSNEIPDVYIVE 97
Query: 349 RLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIH 528
RLFSSSLV +VS PR++ V HFKKGTEICNYSYS+ IL++RLNRQRL+VCLEE++YIH
Sbjct: 98 RLFSSSLVVVVSHSKPRQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEEAIYIH 157
Query: 529 NIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPA 708
NI+DMK+L TI + P NP GLCALSIN+ N Y+AYPGS T GE+ ++D +L+ I A
Sbjct: 158 NIKDMKLLKTILDIPANPTGLCALSINHSNSYVAYPGSLTTGEIVLYDGHSLKTVCTIAA 217
Query: 709 HDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDG 888
H+ LAA+AF+A G+KLA+ASEKGTVIRVFS+P+GQKL+EFRRG+KR V+I SL FSMD
Sbjct: 218 HEGTLAAIAFNALGSKLASASEKGTVIRVFSVPDGQKLYEFRRGMKRYVTISSLVFSMDS 277
Query: 889 MFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAF 1068
FL ASSNTETVHIFKLE + EEP+TWTGY GK+ MA+++YLP+QV++M NQ RAF
Sbjct: 278 QFLCASSNTETVHIFKLEHLTNSRPEEPSTWTGYMGKMFMAASNYLPTQVSDMMNQDRAF 337
Query: 1069 ATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGSME 1248
AT RL F G +NIC L+TIQK+PRLLV +SDG+LY+YNL PQ+GGEC L+K H L S
Sbjct: 338 ATGRLNFSGQRNICTLSTIQKLPRLLVASSDGHLYIYNLDPQDGGECVLIKTHSLLSSGT 397
Query: 1249 T 1251
T
Sbjct: 398 T 398
>ref|XP_537936.2| PREDICTED: similar to Wdr45 like [Canis familiaris].
Length = 450
Score = 126 bits (317), Expect = 4e-29
Identities = 103/332 (31%), Positives = 163/332 (49%), Gaps = 10/332 (3%)
Frame = +1
Query: 244 AVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVS-----LKAPRKLK 408
A G ++G++ ++ + + E+ E + V VE LF + +A+V P K+
Sbjct: 132 ACGMENGFRVYNTDPLKEKEK-QEFLEG-GVGHVEMLFRCNYLALVGGGKKPKYPPNKVM 189
Query: 409 VCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESL----YIHNIRDMKVLHTIRETPP 576
+ K + +S + AV+L R R+VV L+ + + HN + V ET
Sbjct: 190 IWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVF----ETCY 245
Query: 577 NPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANM-IPAHDSPLAALAFDASGT 753
NP GLC L N++N LA+PG+ T G VQ+ D + + IPAH+ L+ +A + GT
Sbjct: 246 NPKGLCVLCPNSNNSLLAFPGTHT-GHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGT 304
Query: 754 KLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIF 933
++ATASEKGT+IR+F G + E RRG + +I + F+ D + SS+ TVHIF
Sbjct: 305 RIATASEKGTLIRIFDTSSGHLIQELRRG-SQAANIYCINFNPDASLICVSSDHGTVHIF 363
Query: 934 KLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICA 1113
E K Q +AS S+LP + F+ +F+ ++P G ICA
Sbjct: 364 AAEDPKRNKQSS------------LASASFLP----KYFSSKWSFSKFQVP-SGSPCICA 406
Query: 1114 LATIQKIPRLLVGASDGYLYMYNLXPQEGGEC 1209
T + ++ +DG Y + P+ GEC
Sbjct: 407 FGT--EPNAVIAICADGSYYKFLFNPK--GEC 434
>ref|XP_863889.1| PREDICTED: similar to WD repeat domain 45 isoform 4 [Canis
familiaris].
Length = 360
Score = 98.2 bits (243), Expect = 2e-20
Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 16/260 (6%)
Frame = +1
Query: 220 FNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 399
FNQD + ++G + +++ + + + + + +VE L +L+A+V +
Sbjct: 14 FNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSMGLVEMLHRCNLLALVGGGSSP 72
Query: 400 KLKVCHF-----------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMK 546
K K + ++++ +LAVR+ ++V+ L +Y+++ D
Sbjct: 73 KFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDSP 132
Query: 547 VLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPAH 711
+T NP GLC L + + L +PG G +Q+ D + + A I AH
Sbjct: 133 RKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINAH 191
Query: 712 DSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGM 891
S +A ++ + GT +A+AS+KGT+IR+ +KL E RRG C + FS D
Sbjct: 192 QSDVACVSLNQPGTVVASASQKGTLIRLSDTQSKEKLVELRRGTDPATLYC-INFSHDSS 250
Query: 892 FLSASSNTETVHIFKLETVK 951
FL ASS+ TVHIF L+ +
Sbjct: 251 FLCASSDKGTVHIFALKDTR 270
>ref|XP_851475.1| PREDICTED: similar to WD repeat domain 45 isoform 1 [Canis
familiaris].
Length = 360
Score = 98.2 bits (243), Expect = 2e-20
Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 16/260 (6%)
Frame = +1
Query: 220 FNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 399
FNQD + ++G + +++ + + + + + +VE L +L+A+V +
Sbjct: 14 FNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSMGLVEMLHRCNLLALVGGGSSP 72
Query: 400 KLKVCHF-----------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMK 546
K K + ++++ +LAVR+ ++V+ L +Y+++ D
Sbjct: 73 KFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDSP 132
Query: 547 VLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPAH 711
+T NP GLC L + + L +PG G +Q+ D + + A I AH
Sbjct: 133 RKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINAH 191
Query: 712 DSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGM 891
S +A ++ + GT +A+AS+KGT+IR+ +KL E RRG C + FS D
Sbjct: 192 QSDVACVSLNQPGTVVASASQKGTLIRLSDTQSKEKLVELRRGTDPATLYC-INFSHDSS 250
Query: 892 FLSASSNTETVHIFKLETVK 951
FL ASS+ TVHIF L+ +
Sbjct: 251 FLCASSDKGTVHIFALKDTR 270
>ref|XP_863843.1| PREDICTED: similar to WD repeat domain 45 isoform 2 [Canis
familiaris].
Length = 346
Score = 79.7 bits (195), Expect = 6e-15
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 16/260 (6%)
Frame = +1
Query: 220 FNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 399
FNQD + ++G + +++ + + + + + +VE L +L+A+V +
Sbjct: 14 FNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSMGLVEMLHRCNLLALVGGGSSP 72
Query: 400 KLKVCHF-----------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMK 546
K K + ++++ +LAVR+ ++V+ L +Y+++ D
Sbjct: 73 KFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDSP 132
Query: 547 VLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPAH 711
+T NP GLC L + + L +PG G +Q+ D + + A I AH
Sbjct: 133 RKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINAH 191
Query: 712 DSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGM 891
S +A ++ + GT +A+AS+KGT+IR+ +KL E RRG C
Sbjct: 192 QSDVACVSLNQPGTVVASASQKGTLIRLSDTQSKEKLVELRRGTDPATLYC--------- 242
Query: 892 FLSASSNTETVHIFKLETVK 951
+ TVHIF L+ +
Sbjct: 243 ------DKGTVHIFALKDTR 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,607,331
Number of extensions: 1283452
Number of successful extensions: 4804
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4768
Number of HSP's successfully gapped: 8
Length of query: 448
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 342
Effective length of database: 15,340,888
Effective search space: 5246583696
Effective search space used: 5246583696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003236
(1345 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028691.1| WD repeat domain phosphoinositide-interactin... 709 0.0
Alignment gi|NP_057087.2| WD repeat domain phosphoinositide-interacting p... 709 0.0
Alignment gi|NP_001028690.1| WD repeat domain phosphoinositide-interactin... 698 0.0
Alignment gi|NP_056425.1| WD repeat domain phosphoinositide-interacting p... 698 0.0
Alignment gi|NP_001028692.1| WD repeat domain phosphoinositide-interactin... 612 e-175
Alignment gi|NP_060453.3| WD repeat domain phosphoinositide-interacting p... 462 e-130
Alignment gi|NP_062559.2| WD repeat domain phosphoinositide-interacting p... 139 5e-33
Alignment gi|NP_001025067.1| WD repeat domain phosphoinositide-interactin... 102 1e-21
Alignment gi|NP_009006.2| WD repeat domain phosphoinositide-interacting p... 101 2e-21
>ref|NP_001028691.1| WD repeat domain phosphoinositide-interacting protein 2 isoform d
[Homo sapiens].
Length = 425
Score = 709 bits (1830), Expect = 0.0
Identities = 353/364 (96%), Positives = 359/364 (98%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGA QLLFANFNQD TSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+VCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
DGMFLSASSNTETVHIFKLETVKEKP EEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNIC+LATIQKIPRLLVGA+DGYLYMYNL PQEGGEC LMKQH+LDGS
Sbjct: 301 AFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGS 360
Query: 1243 METT 1254
+ETT
Sbjct: 361 LETT 364
>ref|NP_057087.2| WD repeat domain phosphoinositide-interacting protein 2 isoform b
[Homo sapiens].
Length = 436
Score = 709 bits (1830), Expect = 0.0
Identities = 353/364 (96%), Positives = 359/364 (98%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGA QLLFANFNQD TSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+VCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
DGMFLSASSNTETVHIFKLETVKEKP EEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNIC+LATIQKIPRLLVGA+DGYLYMYNL PQEGGEC LMKQH+LDGS
Sbjct: 301 AFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGS 360
Query: 1243 METT 1254
+ETT
Sbjct: 361 LETT 364
>ref|NP_001028690.1| WD repeat domain phosphoinositide-interacting protein 2 isoform c
[Homo sapiens].
Length = 443
Score = 698 bits (1801), Expect = 0.0
Identities = 353/382 (92%), Positives = 359/382 (93%), Gaps = 18/382 (4%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVT------------------SLAVGSKSGYKFFSLSS 288
MNLASQSGEAGA QLLFANFNQD T SLAVGSKSGYKFFSLSS
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTEVKGASRAAGLGRRAVVWSLAVGSKSGYKFFSLSS 60
Query: 289 VDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTIL 468
VDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTIL
Sbjct: 61 VDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTIL 120
Query: 469 AVRLNRQRLVVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSAT 648
AV+LNRQRL+VCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSAT
Sbjct: 121 AVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSAT 180
Query: 649 IGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFE 828
IGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFE
Sbjct: 181 IGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFE 240
Query: 829 FRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLM 1008
FRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVKEKP EEPTTWTGYFGKVLM
Sbjct: 241 FRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLM 300
Query: 1009 ASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLX 1188
ASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNIC+LATIQKIPRLLVGA+DGYLYMYNL
Sbjct: 301 ASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLD 360
Query: 1189 PQEGGECTLMKQHKLDGSMETT 1254
PQEGGEC LMKQH+LDGS+ETT
Sbjct: 361 PQEGGECALMKQHRLDGSLETT 382
>ref|NP_056425.1| WD repeat domain phosphoinositide-interacting protein 2 isoform a
[Homo sapiens].
Length = 454
Score = 698 bits (1801), Expect = 0.0
Identities = 353/382 (92%), Positives = 359/382 (93%), Gaps = 18/382 (4%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVT------------------SLAVGSKSGYKFFSLSS 288
MNLASQSGEAGA QLLFANFNQD T SLAVGSKSGYKFFSLSS
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTEVKGASRAAGLGRRAVVWSLAVGSKSGYKFFSLSS 60
Query: 289 VDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTIL 468
VDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTIL
Sbjct: 61 VDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTIL 120
Query: 469 AVRLNRQRLVVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSAT 648
AV+LNRQRL+VCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSAT
Sbjct: 121 AVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSAT 180
Query: 649 IGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFE 828
IGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFE
Sbjct: 181 IGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFE 240
Query: 829 FRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLM 1008
FRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVKEKP EEPTTWTGYFGKVLM
Sbjct: 241 FRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLM 300
Query: 1009 ASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLX 1188
ASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNIC+LATIQKIPRLLVGA+DGYLYMYNL
Sbjct: 301 ASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLD 360
Query: 1189 PQEGGECTLMKQHKLDGSMETT 1254
PQEGGEC LMKQH+LDGS+ETT
Sbjct: 361 PQEGGECALMKQHRLDGSLETT 382
>ref|NP_001028692.1| WD repeat domain phosphoinositide-interacting protein 2 isoform e
[Homo sapiens].
Length = 384
Score = 612 bits (1579), Expect = e-175
Identities = 302/311 (97%), Positives = 308/311 (99%)
Frame = +1
Query: 322 DTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVV 501
DTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+V
Sbjct: 13 DTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIV 72
Query: 502 CLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTIN 681
CLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTIN
Sbjct: 73 CLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTIN 132
Query: 682 LRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSI 861
LRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSI
Sbjct: 133 LRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSI 192
Query: 862 CSLAFSMDGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVT 1041
CSLAFSMDGMFLSASSNTETVHIFKLETVKEKP EEPTTWTGYFGKVLMASTSYLPSQVT
Sbjct: 193 CSLAFSMDGMFLSASSNTETVHIFKLETVKEKPPEEPTTWTGYFGKVLMASTSYLPSQVT 252
Query: 1042 EMFNQGRAFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMK 1221
EMFNQGRAFATVRLPFCGHKNIC+LATIQKIPRLLVGA+DGYLYMYNL PQEGGEC LMK
Sbjct: 253 EMFNQGRAFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLDPQEGGECALMK 312
Query: 1222 QHKLDGSMETT 1254
QH+LDGS+ETT
Sbjct: 313 QHRLDGSLETT 323
>ref|NP_060453.3| WD repeat domain phosphoinositide-interacting protein 1 [Homo
sapiens].
Length = 446
Score = 462 bits (1189), Expect = e-130
Identities = 228/351 (64%), Positives = 281/351 (80%)
Frame = +1
Query: 199 SQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAI 378
S L +FNQD TSLA G+K+GYK FSLSSV++L+Q++ + DV IVERLFSSSLV +
Sbjct: 15 SALSCFSFNQDCTSLATGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVV 74
Query: 379 VSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMKVLHT 558
VS PR++ V HFKKGTEICNYSYS+ IL++RLNRQRL+VCLEES+YIHNI+DMK+L T
Sbjct: 75 VSHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKT 134
Query: 559 IRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAF 738
+ + P NP GLCALSIN+ N YLAYPGS T GE+ ++D +L+ I AH+ LAA+ F
Sbjct: 135 LLDIPANPTGLCALSINHSNSYLAYPGSLTSGEIVLYDGNSLKTVCTIAAHEGTLAAITF 194
Query: 739 DASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTE 918
+ASG+KLA+ASEKGTVIRVFS+P+GQKL+EFRRG+KR V+I SL FSMD FL ASSNTE
Sbjct: 195 NASGSKLASASEKGTVIRVFSVPDGQKLYEFRRGMKRYVTISSLVFSMDSQFLCASSNTE 254
Query: 919 TVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGH 1098
TVHIFKLE V EEP+TW+GY GK+ MA+T+YLP+QV++M +Q RAFAT RL F G
Sbjct: 255 TVHIFKLEQVTNSRPEEPSTWSGYMGKMFMAATNYLPTQVSDMMHQDRAFATARLNFSGQ 314
Query: 1099 KNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGSMET 1251
+NIC L+TIQK+PRLLV +S G+LYMYNL PQ+GGEC L+K H L GS T
Sbjct: 315 RNICTLSTIQKLPRLLVASSSGHLYMYNLDPQDGGECVLIKTHSLLGSGTT 365
>ref|NP_062559.2| WD repeat domain phosphoinositide-interacting protein 3 [Homo
sapiens].
Length = 344
Score = 139 bits (351), Expect = 5e-33
Identities = 110/345 (31%), Positives = 171/345 (49%), Gaps = 10/345 (2%)
Frame = +1
Query: 205 LLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVS 384
LL+A FNQD A G ++G++ ++ + + E+ E + V VE LF + +A+V
Sbjct: 13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEK-QEFLEG-GVGHVEMLFRCNYLALVG 70
Query: 385 -----LKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESL----YIHNIR 537
P K+ + K + +S + AV+L R R+VV L+ + + HN
Sbjct: 71 GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPH 130
Query: 538 DMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANM-IPAHD 714
+ V ET NP GLC L N++N LA+PG+ T G VQ+ D + + IPAH+
Sbjct: 131 QLHVF----ETCYNPKGLCVLCPNSNNSLLAFPGTHT-GHVQLVDLASTEKPPVDIPAHE 185
Query: 715 SPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMF 894
L+ +A + GT++ATASEKGT+IR+F G + E RRG + +I + F+ D
Sbjct: 186 GVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRG-SQAANIYCINFNQDASL 244
Query: 895 LSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFAT 1074
+ SS+ TVHIF E K Q +AS S+LP + F+ +F+
Sbjct: 245 ICVSSDHGTVHIFAAEDPKRNKQSS------------LASASFLP----KYFSSKWSFSK 288
Query: 1075 VRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGEC 1209
++P G ICA T + ++ +DG Y + P+ GEC
Sbjct: 289 FQVP-SGSPCICAFGT--EPNAVIAICADGSYYKFLFNPK--GEC 328
>ref|NP_001025067.1| WD repeat domain phosphoinositide-interacting protein 4 isoform 2
[Homo sapiens].
Length = 360
Score = 102 bits (253), Expect = 1e-21
Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 16/260 (6%)
Frame = +1
Query: 220 FNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 399
FNQD + ++G + +++ + + + + + +VE L S+L+A+V +
Sbjct: 14 FNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSMGLVEMLHRSNLLALVGGGSSP 72
Query: 400 KLKVCHF-----------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMK 546
K K + ++++ +L+VR+ ++V+ L+ +Y+++ D
Sbjct: 73 KFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNP 132
Query: 547 VLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPAH 711
+T NP GLC L + + L +PG G +Q+ D + + A I AH
Sbjct: 133 RKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINAH 191
Query: 712 DSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGM 891
S +A ++ + GT +A+AS+KGT+IR+F +KL E RRG C + FS D
Sbjct: 192 QSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYC-INFSHDSS 250
Query: 892 FLSASSNTETVHIFKLETVK 951
FL ASS+ TVHIF L+ +
Sbjct: 251 FLCASSDKGTVHIFALKDTR 270
>ref|NP_009006.2| WD repeat domain phosphoinositide-interacting protein 4 isoform 1
[Homo sapiens].
Length = 361
Score = 101 bits (251), Expect = 2e-21
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 17/261 (6%)
Frame = +1
Query: 220 FNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 399
FNQD + ++G + +++ + + + + + +VE L S+L+A+V +
Sbjct: 14 FNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSMGLVEMLHRSNLLALVGGGSSP 72
Query: 400 KLKVCHF------------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDM 543
K K + ++++ +L+VR+ ++V+ L+ +Y+++ D
Sbjct: 73 KFSEISAVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDN 132
Query: 544 KVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPA 708
+T NP GLC L + + L +PG G +Q+ D + + A I A
Sbjct: 133 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINA 191
Query: 709 HDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDG 888
H S +A ++ + GT +A+AS+KGT+IR+F +KL E RRG C + FS D
Sbjct: 192 HQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYC-INFSHDS 250
Query: 889 MFLSASSNTETVHIFKLETVK 951
FL ASS+ TVHIF L+ +
Sbjct: 251 SFLCASSDKGTVHIFALKDTR 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,586,935
Number of extensions: 1254199
Number of successful extensions: 4799
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4738
Number of HSP's successfully gapped: 9
Length of query: 448
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 342
Effective length of database: 14,802,980
Effective search space: 5062619160
Effective search space used: 5062619160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003236
(1345 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848485.1| WD repeat domain phosphoinositide-interacting p... 705 0.0
Alignment gi|NP_666052.1| WD repeat domain phosphoinositide-interacting p... 461 e-130
Alignment gi|NP_080069.2| WD repeat domain phosphoinositide-interacting p... 139 4e-33
Alignment gi|NP_758960.1| WD repeat domain phosphoinositide-interacting p... 104 1e-22
>ref|NP_848485.1| WD repeat domain phosphoinositide-interacting protein 2 [Mus
musculus].
Length = 445
Score = 705 bits (1819), Expect = 0.0
Identities = 355/384 (92%), Positives = 363/384 (94%), Gaps = 1/384 (0%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGA QLLFANFNQD TSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAV+LNRQRL+VCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSA+IGEVQVFDTINLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSASIGEVQVFDTINLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
DGMFLSASSNTETVHIFKLE V+EKP EEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DGMFLSASSNTETVHIFKLEAVREKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNIC+L TIQKIPRLLVGASDGYLYMYNL PQEGGEC LM+QH+LDGS
Sbjct: 301 AFATVRLPFCGHKNICSLTTIQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGS 360
Query: 1243 METTTRSWTHVSR-LPLGGAGYXT 1311
METT+ S PL Y T
Sbjct: 361 METTSEIVDSASHDCPLATQTYGT 384
>ref|NP_666052.1| WD repeat domain phosphoinositide-interacting protein 1 [Mus
musculus].
Length = 446
Score = 461 bits (1186), Expect = e-130
Identities = 224/345 (64%), Positives = 281/345 (81%)
Frame = +1
Query: 217 NFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAP 396
+FNQD TSLA+G+K+GYK FSLSSV++L+Q++ + DV IVERLFSSSLV +VS P
Sbjct: 21 SFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKP 80
Query: 397 RKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMKVLHTIRETPP 576
R++ V HFKKGTEICNYSYS+ IL++RLNRQRL+VCLEES+YIHNI+DMK+L T+ + P
Sbjct: 81 RQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTVLDIPS 140
Query: 577 NPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTK 756
NP GLCALSIN+ N YLAYPGS + GE+ ++D +L+ I AH+ LAA+ F++SG+K
Sbjct: 141 NPTGLCALSINHSNSYLAYPGSQSTGEIVLYDGNSLKTVCTIAAHEGTLAAITFNSSGSK 200
Query: 757 LATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFK 936
LA+ASEKGTVIRVFS+PEGQKL+EFRRG+KR V+I SL FSMD FL ASSNTETVHIFK
Sbjct: 201 LASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVFSMDSQFLCASSNTETVHIFK 260
Query: 937 LETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICAL 1116
+E + + EEP+TW+GY GK+ MA+T+YLP+QV++M NQ RAFAT RL F G KNIC L
Sbjct: 261 MEHLTDSRPEEPSTWSGYMGKMFMAATNYLPAQVSDMMNQDRAFATGRLNFSGQKNICTL 320
Query: 1117 ATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGSMET 1251
+TIQK+PRLLV +SDG+LY+YNL PQ+GGEC L+K H L S T
Sbjct: 321 STIQKLPRLLVASSDGHLYIYNLDPQDGGECVLIKTHSLLSSGTT 365
>ref|NP_080069.2| WD repeat domain phosphoinositide-interacting protein 3 [Mus
musculus].
Length = 344
Score = 139 bits (351), Expect = 4e-33
Identities = 110/345 (31%), Positives = 171/345 (49%), Gaps = 10/345 (2%)
Frame = +1
Query: 205 LLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVS 384
LL+A FNQD A G ++G++ ++ + + E+ E + V VE LF + +A+V
Sbjct: 13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEK-QEFLEG-GVGHVEMLFRCNYLALVG 70
Query: 385 -----LKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESL----YIHNIR 537
P K+ + K + +S + AV+L R R+VV L+ + + HN
Sbjct: 71 GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPH 130
Query: 538 DMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANM-IPAHD 714
+ V ET NP GLC L N++N LA+PG+ T G VQ+ D + + IPAH+
Sbjct: 131 QLHVF----ETCYNPKGLCVLCPNSNNSLLAFPGTHT-GHVQLVDLASTEKPPVDIPAHE 185
Query: 715 SPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMF 894
L+ +A + GT++ATASEKGT+IR+F G + E RRG + +I + F+ D
Sbjct: 186 GVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRG-SQAANIYCINFNQDASL 244
Query: 895 LSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFAT 1074
+ SS+ TVHIF E K Q +AS S+LP + F+ +F+
Sbjct: 245 ICVSSDHGTVHIFAAEDPKRNKQSS------------LASASFLP----KYFSSKWSFSK 288
Query: 1075 VRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGEC 1209
++P G ICA T + ++ +DG Y + P+ GEC
Sbjct: 289 FQVP-SGSPCICAFGT--EPNAVIAICADGSYYKFLFSPK--GEC 328
>ref|NP_758960.1| WD repeat domain phosphoinositide-interacting protein 4 [Mus
musculus].
Length = 360
Score = 104 bits (260), Expect = 1e-22
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 16/261 (6%)
Frame = +1
Query: 217 NFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAP 396
+FNQD + ++G + +++ + + + + V +VE L S+L+A+V +
Sbjct: 13 HFNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSVGLVEMLHRSNLLALVGGGSS 71
Query: 397 RKLKVCHF-----------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDM 543
K K + ++++ +LAVR+ ++V+ L +Y+++ D
Sbjct: 72 PKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDS 131
Query: 544 KVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPA 708
+T NP GLC L + + L +PG G +Q+ D + + A I A
Sbjct: 132 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINA 190
Query: 709 HDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDG 888
H S +A ++ + GT +A+AS+KGT+IR+F +KL E RRG C + FS D
Sbjct: 191 HQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYC-INFSHDS 249
Query: 889 MFLSASSNTETVHIFKLETVK 951
FL ASS+ TVHIF L+ +
Sbjct: 250 SFLCASSDKGTVHIFALKDTR 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,209,649
Number of extensions: 1047252
Number of successful extensions: 4476
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4322
Number of HSP's successfully gapped: 4
Length of query: 448
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 343
Effective length of database: 12,463,779
Effective search space: 4275076197
Effective search space used: 4275076197
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003236
(1345 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177224.1| WD repeat domain phosphoinositide-interactin... 725 0.0
Alignment gi|NP_001177223.1| WD repeat domain phosphoinositide-interactin... 460 e-130
Alignment gi|NP_001177225.1| WD repeat domain phosphoinositide-interactin... 137 1e-32
Alignment gi|XP_003124324.1| PREDICTED: WD repeat domain phosphoinositide... 103 2e-22
Alignment gi|NP_001177222.1| WD repeat domain phosphoinositide-interactin... 103 3e-22
>ref|NP_001177224.1| WD repeat domain phosphoinositide-interacting protein 2 [Sus scrofa].
Length = 436
Score = 725 bits (1871), Expect = 0.0
Identities = 368/384 (95%), Positives = 368/384 (95%), Gaps = 1/384 (0%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 342
MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
Sbjct: 1 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI 60
Query: 343 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 522
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY
Sbjct: 61 VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLY 120
Query: 523 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 702
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI
Sbjct: 121 IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI 180
Query: 703 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 882
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
Sbjct: 181 PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240
Query: 883 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 1062
DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
Sbjct: 241 DGMFLSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR 300
Query: 1063 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGS 1242
AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNL PQEGGECTLMKQHKLDGS
Sbjct: 301 AFATVRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLDPQEGGECTLMKQHKLDGS 360
Query: 1243 METTTRSWTHVSR-LPLGGAGYXT 1311
METT S PL Y T
Sbjct: 361 METTNEILDSTSHDCPLVAQAYGT 384
>ref|NP_001177223.1| WD repeat domain phosphoinositide-interacting protein 1 [Sus scrofa].
Length = 446
Score = 460 bits (1184), Expect = e-130
Identities = 224/345 (64%), Positives = 282/345 (81%)
Frame = +1
Query: 217 NFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAP 396
+FNQD TSLA+G+K+GYK FSLSSV++L+Q++ + DV IVERLFSSSLV +VS P
Sbjct: 21 SFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKP 80
Query: 397 RKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMKVLHTIRETPP 576
R++ V HFKKGTEICNYSYS+ IL++RLNRQRL+VCLEES+YIHNI+DMK+L TI + P
Sbjct: 81 RQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTILDIPA 140
Query: 577 NPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTK 756
NP GLCALSIN+ N Y+AYPGS T GE+ ++D +L+ I AH+ LAA+AF+A+G+K
Sbjct: 141 NPTGLCALSINHSNSYVAYPGSLTTGEIVLYDGHSLKTLCTIAAHEGTLAAIAFNAAGSK 200
Query: 757 LATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFK 936
LA+ASEKGTVIRVFS+PEGQKL+EFRRG+KR V+I SL FSMD FL ASSNTETVHIFK
Sbjct: 201 LASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVFSMDSQFLCASSNTETVHIFK 260
Query: 937 LETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICAL 1116
LE + EEP+TW+GY GK+ +A+++YLP+QV++M NQ RAFAT RL F G +NIC L
Sbjct: 261 LEHLTNSRPEEPSTWSGYMGKMFLAASNYLPAQVSDMMNQDRAFATGRLHFSGQRNICTL 320
Query: 1117 ATIQKIPRLLVGASDGYLYMYNLXPQEGGECTLMKQHKLDGSMET 1251
+TIQK+PRLLV +SDG+LY+YNL PQ+GG+C L+K H L GS T
Sbjct: 321 STIQKLPRLLVASSDGHLYIYNLDPQDGGDCVLIKTHSLLGSGTT 365
>ref|NP_001177225.1| WD repeat domain phosphoinositide-interacting protein 3 [Sus scrofa].
Length = 344
Score = 137 bits (345), Expect = 1e-32
Identities = 107/345 (31%), Positives = 170/345 (49%), Gaps = 10/345 (2%)
Frame = +1
Query: 205 LLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVS 384
LL+A FNQD A G ++G++ ++ + + E+ E + V +E LF + +A+V
Sbjct: 13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEK-QEFLEG-GVGHIEMLFRCNYLALVG 70
Query: 385 -----LKAPRKLKVCHFKKGTEICNYSYSNTILAVRLNRQRLVVCLEESL----YIHNIR 537
P K+ + K + +S + A +L R R+VV L+ + + HN
Sbjct: 71 GGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAAKLRRDRIVVVLDSMIKVFTFTHNPH 130
Query: 538 DMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANM-IPAHD 714
+ V ET NP GLC L N++N LA+PG+ T G VQ+ D + + IPAH+
Sbjct: 131 QLHVF----ETCYNPKGLCVLCPNSNNSLLAFPGTHT-GHVQLVDLASTEKPPVDIPAHE 185
Query: 715 SPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMF 894
L+ +A + GT++ATASEKGT+IR+F G + E RRG + +I + F+ D
Sbjct: 186 GVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRG-SQAANIYCINFNQDASL 244
Query: 895 LSASSNTETVHIFKLETVKEKPQEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFAT 1074
+ SS+ TVH+F E K Q +AS S+LP + F+ +F+
Sbjct: 245 ICVSSDHGTVHVFAAEDPKRNKQSS------------LASASFLP----KYFSSKWSFSK 288
Query: 1075 VRLPFCGHKNICALATIQKIPRLLVGASDGYLYMYNLXPQEGGEC 1209
++P G ICA T + ++ +DG Y + P+ GEC
Sbjct: 289 FQVP-SGSPCICAFGT--EPNAVIAICADGSYYKFLFNPK--GEC 328
>ref|XP_003124324.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein
2-like isoform 2 [Sus scrofa].
Length = 67
Score = 103 bits (258), Expect = 2e-22
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 163 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECT 321
MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYEC+
Sbjct: 1 MNLASQSGEAGASQLLFANFNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECS 53
>ref|NP_001177222.1| WD repeat domain phosphoinositide-interacting protein 4 [Sus
scrofa].
Length = 360
Score = 103 bits (256), Expect = 3e-22
Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 16/260 (6%)
Frame = +1
Query: 220 FNQDVTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 399
FNQD + ++G + +++ + + + + + +VE L S+L+A+V +
Sbjct: 14 FNQDQSCFCCAMETGVRIYNVEPLMEKGHL-DHEQVGSMGLVEMLHRSNLLALVGGGSSP 72
Query: 400 KLKVCHF-----------KKGTEICNYSYSNTILAVRLNRQRLVVCLEESLYIHNIRDMK 546
K K + ++++ +LAVR+ ++V+ L+ +Y+++ D
Sbjct: 73 KFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLKNRIYVYSFPDNP 132
Query: 547 VLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLR-----AANMIPAH 711
+T NP GLC L + + L +PG G +Q+ D + + A I AH
Sbjct: 133 RKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKC-GSLQLVDLASTKPGTSSAPFTINAH 191
Query: 712 DSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGM 891
S +A ++ + GT +A+AS+KGT+IR+F +KL E RRG C + FS D
Sbjct: 192 QSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYC-INFSHDSS 250
Query: 892 FLSASSNTETVHIFKLETVK 951
FL ASS+ TVHIF L+ +
Sbjct: 251 FLCASSDKGTVHIFALKDTR 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,365,289
Number of extensions: 849544
Number of successful extensions: 3173
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3137
Number of HSP's successfully gapped: 5
Length of query: 448
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,804,438
Effective search space: 3046335548
Effective search space used: 3046335548
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003236
(1345 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 585 e-164
Sscrofa_Chr03 337 9e-90
Sscrofa_Chr12 62 8e-07
>Sscrofa_ChrX
|| Length = 144288218
Score = 585 bits (295), Expect = e-164
Identities = 911/1117 (81%), Gaps = 46/1117 (4%)
Strand = Plus / Plus
Query: 160 accatgaacctggcgagtcagagcggcgaggccggcgccagccagctgctcttcgccaac 219
||||||| ||||| |||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 87535160 accatgaccctggggagtcagagcctcgaggccggtgccagccagttgctcttcgccaac 87535219
Query: 220 ttcaaccaggacgtcacgtctctagctgttggtagtaaatccggttataaatttttctcc 279
||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 87535220 ttcaaccaggacgtcacatctctagctgttggtagtaaatccaattataaaattttctcc 87535279
Query: 280 ctttcttctgtggataaactggaacagatctatgaatgcactgacacggaggacgtgtgc 339
||||||||||||||||||||||||||||| | ||||| || | | || || || |||| |
Sbjct: 87535280 ctttcttctgtggataaactggaacagatttgtgaatacatttatactgaagatgtgttc 87535339
Query: 340 atcgtggaaaggctcttctctagcagcttggtggccatcgtcagcctcaaagct------ 393
||| |||||| | |||| | |||| |||||||||| |||||||||||||||
Sbjct: 87535340 atcatggaaatattgttctaaatcagcatggtggccatggtcagcctcaaagcttccagg 87535399
Query: 394 -------ccccgcaagctgaaggtctgccacttcaagaagggcactgagatctgcaacta 446
||| | |||||||| || ||||||| |||||||| || |||||| ||| |||
Sbjct: 87535400 acaaggtcccaggaagctgaaagtttgccactctaagaagggaaccgagatcggcatcta 87535459
Query: 447 cagctactccaacaccatcctggccgtgaggttgaacaggcagcggctggtcgtgtgcct 506
|||||| |||||||| |||| | |||| ||||||||||||| ||||| | |||||||
Sbjct: 87535460 cagctattccaacactatcccagtggtgaagttgaacaggcagaggctgaccatgtgcct 87535519
Query: 507 cgaggagtctctgtacatccacaacatccgggacatgaaggtgctgcacaccatccggga 566
|||||| | |||||||| ||||||||||||||||||||||| || ||||
Sbjct: 87535520 ggaggag-----------ctacaacatctgggacatgaaggtgctgcacaccgtcaggga 87535568
Query: 567 gac-gccccc--gaaccccgcaggcctgtgtgcgctgtccataaacaacgacaactgcta 623
||| |||||| ||||||| ||| | |||| | ||| ||||||| || || |
Sbjct: 87535569 gaccgcccccaggaaccccacagactggtgtctgagatccctaaacaatga--acatatc 87535626
Query: 624 cctggcgtaccccggcagcgccaccatcggggaggtgcaggtcttcgacaccatcaacct 683
| |||| || || ||||| |||||||| ||||| |||| ||||||||||||||
Sbjct: 87535627 cttggcatatcctggcagggccaccat-------gtgcaagtctctgacaccatcaacct 87535679
Query: 684 gagagctgcgaacatgatcccggctcacgacagccc-gttagccgccctggccttcgacg 742
|||| || |||||| |||| || ||||||| |||||| | |||||| | |||
Sbjct: 87535680 gagatctttgaacat-----cggcccataacagccccgttagctgtgctggccattgaca 87535734
Query: 743 ccagtggaaccaagctcgccactgcttccgagaagggg----accgtgattcgggtgttt 798
|||| ||||||||||||||||||||| | |||||| | ||| ||||| ||||||||
Sbjct: 87535735 ccagcagaaccaagctcgccactgctttcaagaaggagggagaccatgattagggtgttt 87535794
Query: 799 tccattccagaaggacagaagctcttcgagttccggagaggcgtgaagaggtgtgtgagc 858
||||||||| ||||| | || ||||||||| ||| ||||| | |||||||||||||||
Sbjct: 87535795 tccattccaaaaggataaaaactcttcgagctccttagaggactaaagaggtgtgtgagc 87535854
Query: 859 atctgctccctggccttcagcatggacggcatgttcctgtccgcgtccagcaacaccgag 918
|||| | ||||||||||||||||||| |||||||||| ||| | |||| || ||| ||
Sbjct: 87535855 atcttttacctggccttcagcatggacagcatgttcctttccacatccaccatcactgaa 87535914
Query: 919 actgtgcacatcttcaaactcgagactgtgaaggagaaacctcaggaggagcccaccacc 978
||||| || |||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct: 87535915 actgtacatatcttcaaactcaagactgtgaaagaaaaacctcaggaggagcccaccacc 87535974
Query: 979 tggacgggctacttcgggaaggtgctcatggcttccaccagctacctgccctcccaggtg 1038
|| |||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 87535975 tgaacggactactacaggaaggtgcccatggcttccaccagctacctgccctcccaggtg 87536034
Query: 1039 acagaaatgttcaaccagggcagagcctttgccacggtgcgcctgcctttctgtggccac 1098
|||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct: 87536035 acagaaatgttcaaccagggaagagcctttgccacggtcttcctgtctttctgtggccac 87536094
Query: 1099 aagaacatctgcgcgctggccacaatccagaagattccgagactgctggtgggagcctct 1158
|||||| ||||| |||||||||||| |||||||||| || ||||||||||||||||
Sbjct: 87536095 aagaacgtctgcatactggccacaatctagaagattccccgattgctggtgggagcctca 87536154
Query: 1159 gacgggtacttgtacatgtacaacctgnacccccaggaaggcggcgagtgcaccctgatg 1218
|| ||||||||||| ||||||||| | | || | | || ||| |||||||| |||||
Sbjct: 87536155 gatgggtacttgtatgtgtacaacccagaactcccgaagggaggcaagtgcaccttgatg 87536214
Query: 1219 aaacagcacaagctggacggcagcatggagaccacca 1255
|||||||||||| |||||||||||||||| ||||||
Sbjct: 87536215 aaacagcacaagtaggacggcagcatggagcccacca 87536251
>Sscrofa_Chr03
|| Length = 144787322
Score = 337 bits (170), Expect = 9e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 320 ctgacacggaggacgtgtgcatcgtggaaaggctcttctctagcagcttggtggccatcg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507183 ctgacacggaggacgtgtgcatcgtggaaaggctcttctctagcagcttggtggccatcg 4507242
Query: 380 tcagcctcaaagctccccgcaagctgaaggtctgccacttcaagaagggcactgagatct 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507243 tcagcctcaaagctccccgcaagctgaaggtctgccacttcaagaagggcactgagatct 4507302
Query: 440 gcaactacagctactccaacaccatcctggccgtgaggttgaacaggcag 489
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507303 gcaactacagctactccaacaccatcctggccgtgaggttgaacaggcag 4507352
Score = 303 bits (153), Expect = 1e-79
Identities = 162/165 (98%)
Strand = Plus / Plus
Query: 957 acctcaggaggagcccaccacctggacgggctacttcgggaaggtgctcatggcttccac 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4515195 acctcaggaggagcccaccacctggacgggctacttcgggaaggtgctcatggcttccac 4515254
Query: 1017 cagctacctgccctcccaggtgacagaaatgttcaaccagggcagagcctttgccacggt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4515255 cagctacctgccctcccaggtgacagaaatgttcaaccagggcagagcctttgccaccgt 4515314
Query: 1077 gcgcctgcctttctgtggccacaagaacatctgcgcgctggccac 1121
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4515315 ccgcctgcctttctgtggccacaagaacatctgtgcgctggccac 4515359
Score = 218 bits (110), Expect = 6e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 847 aggtgtgtgagcatctgctccctggccttcagcatggacggcatgttcctgtccgcgtcc 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4514405 aggtgtgtgagcatctgctccctggccttcagcatggacggcatgttcctgtccgcgtcc 4514464
Query: 907 agcaacaccgagactgtgcacatcttcaaactcgagactgtgaaggagaa 956
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4514465 agcaacaccgagactgtgcacatcttcaaactcgagactgtgaaggagaa 4514514
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 580 cccgcaggcctgtgtgcgctgtccataaacaacgacaactgctacctggcgtaccccggc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509105 cccgcaggcctgtgtgcgctgtccataaacaacgacaactgctacctggcgtaccccggc 4509164
Query: 640 agcgccaccatcggggaggtgcaggtcttcgacaccatcaacctg 684
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509165 agcgccaccatcggggaggtgcaggtcttcgacaccatcaacctg 4509209
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 487 cagcggctggtcgtgtgcctcgaggagtctctgtacatccacaacatccgggacatgaag 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4508658 cagcggctggtcgtgtgcctcgaggagtctctgtacatccacaacatccgggacatgaag 4508717
Query: 547 gtgctgcacaccatccgggagacgcccccgaaccccgcagg 587
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 4508718 gtgctgcacaccatccgggagacgcccccgaaccccgcagg 4508758
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 684 gagagctgcgaacatgatcccggctcacgacagcccgttagccgccctggccttcgacgc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509570 gagagctgcgaacatgatcccggctcacgacagcccgttagccgccctggccttcgacgc 4509629
Query: 744 cagtggaaccaagctcgccactgcttccgagaagg 778
|||||||||||||||||||||||||||||||||||
Sbjct: 4509630 cagtggaaccaagctcgccactgcttccgagaagg 4509664
Score = 186 bits (94), Expect = 2e-44
Identities = 105/109 (96%)
Strand = Plus / Plus
Query: 1122 aatccagaagattccgagactgctggtgggagcctctgacgggtacttgtacatgtacaa 1181
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516128 aatccaaaagattccgcgactgctggtgggagcctctgacgggtacttgtacatgtacaa 4516187
Query: 1182 cctgnacccccaggaaggcggcgagtgcaccctgatgaaacagcacaag 1230
|||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4516188 cctggacccccaggagggcggcgagtgcaccctgatgaaacagcacaag 4516236
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 237 gtctctagctgttggtagtaaatccggttataaatttttctccctttcttctgtggataa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494316 gtctctagctgttggtagtaaatccggttataaatttttctccctttcttctgtggataa 4494375
Query: 297 actggaacagatctatgaatgca 319
|||||||||||||||||||||||
Sbjct: 4494376 actggaacagatctatgaatgca 4494398
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 160 accatgaacctggcgagtcagagcggcgaggccggcgccagccagctgctcttcgccaac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4487361 accatgaacctggcgagtcagagcggcgaggccggcgccagccagctgctcttcgccaac 4487420
Query: 220 ttcaaccaggacgtcacgt 238
|||||||||||||||||||
Sbjct: 4487421 ttcaaccaggacgtcacgt 4487439
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 776 aggggaccgtgattcgggtgttttccattccagaaggacagaagctcttcgagttccgga 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4512544 aggggaccgtgattcgggtgttttccattccagaaggacagaagctcttcgagttccgga 4512603
Query: 836 gaggcgtgaagaggtg 851
||||||||||||||||
Sbjct: 4512604 gaggcgtgaagaggtg 4512619
Score = 103 bits (52), Expect = 2e-19
Identities = 88/95 (92%), Gaps = 4/95 (4%)
Strand = Plus / Plus
Query: 1230 gctggacggcagcatggagaccacc-acgagatcctggact-cacgtctcacgactgccc 1287
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 4516498 gctggacggcagcatggagaccaccaacgagatcctggactccacgtctcacgactgccc 4516557
Query: 1288 ctgggtggcgcagg-ctacngcac-gctgcggcca 1320
| ||||||||||| |||| |||| ||||||||||
Sbjct: 4516558 cctggtggcgcaggcctacggcacggctgcggcca 4516592
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 94 ccctgagctcccccgagctgccctcgagcgcgcgagt 130
|||||||||||||||||||||||||||||||||||||
Sbjct: 4487295 ccctgagctcccccgagctgccctcgagcgcgcgagt 4487331
>Sscrofa_Chr12
|| Length = 63588571
Score = 61.9 bits (31), Expect = 8e-07
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 415 cacttcaagaagggcactgagatctgcaactacagctactccaacaccatcctggccgtg 474
||||||||||| ||||| |||||||| || ||||||||||||| || ||||||| || |
Sbjct: 12189903 cacttcaagaaaggcacggagatctgtaattacagctactccagcaacatcctgtccatc 12189962
Query: 475 aggttgaacaggcag 489
||| ||||| |||||
Sbjct: 12189963 aggctgaaccggcag 12189977
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,250,777
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 18
Length of query: 1345
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1324
Effective length of database: 2,808,413,156
Effective search space: 3718339018544
Effective search space used: 3718339018544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)