Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003238
(1823 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178190.1| interferon regulatory factor 1 [Bos taurus]. 620 e-178
Alignment gi|NP_001192722.1| interferon regulatory factor 2 [Bos taurus]. 219 6e-57
Alignment gi|XP_002698698.1| PREDICTED: interferon regulatory factor 2 [B... 219 6e-57
Alignment gi|NP_001077238.1| interferon regulatory factor 8 [Bos taurus]. 118 2e-26
Alignment gi|NP_001193091.1| interferon regulatory factor 4 [Bos taurus]. 115 1e-25
Alignment gi|XP_002697657.1| PREDICTED: interferon regulatory factor 4-li... 115 1e-25
Alignment gi|NP_001030542.1| interferon regulatory factor 5 [Bos taurus]. 111 2e-24
Alignment gi|XP_002692330.1| PREDICTED: interferon regulatory factor 10-l... 109 7e-24
Alignment gi|XP_875833.2| PREDICTED: interferon regulatory factor 10-like... 109 7e-24
Alignment gi|NP_001070402.1| interferon regulatory factor 6 [Bos taurus]. 106 8e-23
>ref|NP_001178190.1| interferon regulatory factor 1 [Bos taurus].
Length = 322
Score = 620 bits (1600), Expect = e-178
Identities = 295/322 (91%), Positives = 310/322 (96%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTK+QR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKSQR 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
KERKSKSSRDA+ KAKKK GE SPDTFSDGLSSSTLPDDHS+YT + Y+GQDLDIE+ L
Sbjct: 121 KERKSKSSRDARSKAKKKPYGEYSPDTFSDGLSSSTLPDDHSNYTVRSYMGQDLDIERTL 180
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
TPALSPC +SSTLP W IPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK
Sbjct: 181 TPALSPCGVSSTLPNWSIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 240
Query: 982 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGLISSDLKNVDT 1161
LLEQ+GWQQT+VDGKGYLLNEPGAQPT+VYG+FSCKEEPEV+SPGGY GLISSD+KN+D
Sbjct: 241 LLEQTGWQQTSVDGKGYLLNEPGAQPTSVYGEFSCKEEPEVDSPGGYIGLISSDMKNMDP 300
Query: 1162 SWLDNLLTPVRLPSIQAIPCAP 1227
SWLD+LLTPVRLPSIQAIPCAP
Sbjct: 301 SWLDSLLTPVRLPSIQAIPCAP 322
>ref|NP_001192722.1| interferon regulatory factor 2 [Bos taurus].
Length = 349
Score = 219 bits (558), Expect = 6e-57
Identities = 121/274 (44%), Positives = 168/274 (61%), Gaps = 14/274 (5%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W++KE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNMIPGLKWLSKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPMSERPSK 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLS---------SSTLPDDHSS-----YTA 759
K +K K+ ++ + K K+ E SP S+G+S +ST+ + S
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPIE-SPLGLSNGVSDLSPEYAVLTSTIKTEVDSTVNIIVVG 179
Query: 760 QGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAAT 939
Q ++ + ++ + C + E + P S S+LY Q+SP+ S +E+ T
Sbjct: 180 QSHLDGTYEDQEIVANPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESET 235
Query: 940 DEDEEGKLTEDIMKLLEQSGWQQTNVDGKGYLLN 1041
+ + D + W++ +V+GK YL N
Sbjct: 236 TD----SVPSDEESAEGRPHWRKRSVEGKQYLSN 265
>ref|XP_002698698.1| PREDICTED: interferon regulatory factor 2 [Bos taurus].
Length = 349
Score = 219 bits (558), Expect = 6e-57
Identities = 121/274 (44%), Positives = 168/274 (61%), Gaps = 14/274 (5%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W++KE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNMIPGLKWLSKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPMSERPSK 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLS---------SSTLPDDHSS-----YTA 759
K +K K+ ++ + K K+ E SP S+G+S +ST+ + S
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPIE-SPLGLSNGVSDLSPEYAVLTSTIKTEVDSTVNIIVVG 179
Query: 760 QGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAAT 939
Q ++ + ++ + C + E + P S S+LY Q+SP+ S +E+ T
Sbjct: 180 QSHLDGTYEDQEIVANPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESET 235
Query: 940 DEDEEGKLTEDIMKLLEQSGWQQTNVDGKGYLLN 1041
+ + D + W++ +V+GK YL N
Sbjct: 236 TD----SVPSDEESAEGRPHWRKRSVEGKQYLSN 265
>ref|NP_001077238.1| interferon regulatory factor 8 [Bos taurus].
Length = 426
Score = 118 bits (295), Expect = 2e-26
Identities = 57/140 (40%), Positives = 86/140 (61%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
R+R WL QI+S PGLIW N E+ +F+IPWKHA K ++ DA +F++WA+ G++K
Sbjct: 9 RLRQWLIEQIDSTMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSK 639
G+K +P TWK RCA+N PD EEV D+S+ S +VYR++P + ++K +
Sbjct: 69 EGDK-AEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EEEQKCKLGV 124
Query: 640 SSRDAKCKAKKKSCGESSPD 699
++ +A + CG S D
Sbjct: 125 AAPGCVSEAVEMECGRSEID 144
>ref|NP_001193091.1| interferon regulatory factor 4 [Bos taurus].
Length = 451
Score = 115 bits (289), Expect = 1e-25
Identities = 50/116 (43%), Positives = 77/116 (66%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R WL QI+S + PGL+W N+E+ IF+IPWKHA K ++ +DA LF++WA+ G+++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKE 627
G +PDP TWK RCA+N D EE+ ++S+ S +VYR++P K K+
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQ 138
>ref|XP_002697657.1| PREDICTED: interferon regulatory factor 4-like [Bos taurus].
Length = 451
Score = 115 bits (289), Expect = 1e-25
Identities = 50/116 (43%), Positives = 77/116 (66%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R WL QI+S + PGL+W N+E+ IF+IPWKHA K ++ +DA LF++WA+ G+++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKE 627
G +PDP TWK RCA+N D EE+ ++S+ S +VYR++P K K+
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQ 138
>ref|NP_001030542.1| interferon regulatory factor 5 [Bos taurus].
Length = 499
Score = 111 bits (278), Expect = 2e-24
Identities = 49/113 (43%), Positives = 69/113 (61%)
Frame = +1
Query: 256 ANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW 435
A +P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++W
Sbjct: 8 ALLPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSHDGDNTIFKAW 67
Query: 436 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
A TG+Y G E DP WKAN RCA+N D + D R+ +VY +
Sbjct: 68 AKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKVYEV 120
>ref|XP_002692330.1| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 109 bits (273), Expect = 7e-24
Identities = 49/107 (45%), Positives = 70/107 (65%)
Frame = +1
Query: 277 MRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRY 456
+R+R WL QI S + GL W + + +F+IPWKHAAK G+ + +DA LFR+WAI+ G+Y
Sbjct: 27 LRLREWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKY 86
Query: 457 KAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRML 597
G + DP TWK RCA+N D EV ++S+ S+ +VYR+L
Sbjct: 87 LEGIDKEDPSTWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRLL 133
>ref|XP_875833.2| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 109 bits (273), Expect = 7e-24
Identities = 49/107 (45%), Positives = 70/107 (65%)
Frame = +1
Query: 277 MRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRY 456
+R+R WL QI S + GL W + + +F+IPWKHAAK G+ + +DA LFR+WAI+ G+Y
Sbjct: 27 LRLREWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKY 86
Query: 457 KAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRML 597
G + DP TWK RCA+N D EV ++S+ S+ +VYR+L
Sbjct: 87 LEGIDKEDPSTWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRLL 133
>ref|NP_001070402.1| interferon regulatory factor 6 [Bos taurus].
Length = 467
Score = 106 bits (264), Expect = 8e-23
Identities = 41/107 (38%), Positives = 70/107 (65%)
Frame = +1
Query: 274 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGR 453
R+R++PWL Q++S PGLIW++++ FQIPWKHA +H ++ +F++WA+ TG+
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 454 YKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
Y+ G +PDP WKA RCA+N + + D ++ + V++Y++
Sbjct: 67 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQV 113
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,826,831
Number of extensions: 2494347
Number of successful extensions: 10566
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 10511
Number of HSP's successfully gapped: 13
Length of query: 607
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,107,870
Effective search space: 7039827130
Effective search space used: 7039827130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003238
(1823 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538621.2| PREDICTED: similar to Interferon regulatory fac... 621 e-178
Alignment gi|XP_848907.1| PREDICTED: similar to interferon regulatory fac... 228 1e-59
Alignment gi|XP_532847.2| PREDICTED: similar to interferon regulatory fac... 219 7e-57
Alignment gi|XP_857502.1| PREDICTED: similar to interferon regulatory fac... 218 2e-56
Alignment gi|XP_857541.1| PREDICTED: similar to Interferon regulatory fac... 209 7e-54
Alignment gi|XP_857460.1| PREDICTED: similar to Interferon regulatory fac... 197 3e-50
Alignment gi|XP_546793.2| PREDICTED: similar to interferon regulatory fac... 119 1e-26
Alignment gi|XP_539383.2| PREDICTED: similar to interferon regulatory fac... 113 7e-25
Alignment gi|XP_849977.1| PREDICTED: similar to interferon-stimulated tra... 106 6e-23
Alignment gi|XP_860263.1| PREDICTED: similar to interferon-stimulated tra... 106 6e-23
>ref|XP_538621.2| PREDICTED: similar to Interferon regulatory factor 1 (IRF-1) [Canis
familiaris].
Length = 321
Score = 621 bits (1601), Expect = e-178
Identities = 294/322 (91%), Positives = 312/322 (96%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
KERKSKSSRDAK KAK+KSCG+SSPDTFSDGLS+STLPDDHSSYTA GY+GQDL++E+ L
Sbjct: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSTSTLPDDHSSYTAHGYMGQDLEVERDL 180
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
TPALSPCA++STLP+W IP EIVPDSTSDLY+FQVSPMPSTSEA TDEDEEGKLTEDIMK
Sbjct: 181 TPALSPCAVTSTLPDWHIP-EIVPDSTSDLYSFQVSPMPSTSEATTDEDEEGKLTEDIMK 239
Query: 982 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGLISSDLKNVDT 1161
LLEQ+GWQ TNVDGKGYLLNEPG QP ++YGDFSCK+EPEV+SPGGY GLISSDLKN+DT
Sbjct: 240 LLEQTGWQPTNVDGKGYLLNEPGTQPPSLYGDFSCKDEPEVDSPGGYVGLISSDLKNMDT 299
Query: 1162 SWLDNLLTPVRLPSIQAIPCAP 1227
SWLD+LLTPVRLPSIQAIPCAP
Sbjct: 300 SWLDSLLTPVRLPSIQAIPCAP 321
>ref|XP_848907.1| PREDICTED: similar to interferon regulatory factor 2 isoform 2 [Canis
familiaris].
Length = 349
Score = 228 bits (581), Expect = 1e-59
Identities = 123/274 (44%), Positives = 172/274 (62%), Gaps = 14/274 (5%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLS---------SSTLPDDHSS-----YTA 759
K +K K+ ++ + K K+ ESS S+G+S +S + ++ S
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPVESSLG-LSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVG 179
Query: 760 QGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAAT 939
Q ++ ++D ++ +T C + E + P S S+LY Q+SP+ S +E+ T
Sbjct: 180 QSHLDSNIDDQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESET 235
Query: 940 DEDEEGKLTEDIMKLLEQSGWQQTNVDGKGYLLN 1041
+ + D + + W++ N++GK YL N
Sbjct: 236 TD----SVPSDEESVEGRPHWRKRNIEGKQYLSN 265
>ref|XP_532847.2| PREDICTED: similar to interferon regulatory factor 2 isoform 1 [Canis
familiaris].
Length = 347
Score = 219 bits (558), Expect = 7e-57
Identities = 121/277 (43%), Positives = 174/277 (62%), Gaps = 18/277 (6%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLS---------SSTLPDDHSS-----YTA 759
K +K K+ ++ + K K+ ESS S+G+S +S + ++ S
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPVESSLG-LSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVG 179
Query: 760 QGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAAT 939
Q ++ ++D ++ +T C + E + P S S+LY Q+SP+ S +E+ T
Sbjct: 180 QSHLDSNIDDQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESET 235
Query: 940 DE---DEEGKLTEDIMKLLEQSGWQQTNVDGKG-YLL 1038
+ +E + + ++++ + S +N+ + YLL
Sbjct: 236 TDSVPSDEESVEKQLVQVAKSSKQYLSNMGTRSTYLL 272
>ref|XP_857502.1| PREDICTED: similar to interferon regulatory factor 2 isoform 4 [Canis
familiaris].
Length = 351
Score = 218 bits (554), Expect = 2e-56
Identities = 124/281 (44%), Positives = 170/281 (60%), Gaps = 21/281 (7%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 622 KERKSKSSRDAKCKAKKKSCG---ESSPDTFSDGLS---------SSTLPDDHSS----- 750
K +K K+ ++ + K K G E + +G+S +S + ++ S
Sbjct: 121 KGKKPKTEKEDRVKHIKVIFGGSDEKAKVVTVNGVSDLSPEYAVLTSAIKNEVDSTVNII 180
Query: 751 YTAQGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSE 930
Q ++ ++D ++ +T C + E + P S S+LY Q+SP+ S +E
Sbjct: 181 VVGQSHLDSNIDDQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAE 236
Query: 931 AATDE----DEEGKLTEDIMKLLEQSGWQQTNVDGKGYLLN 1041
+ T + DEE +EQ + N++GK YL N
Sbjct: 237 SETTDSVPSDEES---------VEQKHLHR-NIEGKQYLSN 267
>ref|XP_857541.1| PREDICTED: similar to Interferon regulatory factor 2 (IRF-2) isoform
5 [Canis familiaris].
Length = 294
Score = 209 bits (532), Expect = 7e-54
Identities = 114/260 (43%), Positives = 149/260 (57%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP------L 114
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
ER SK Q ++ ++D ++ +
Sbjct: 115 SERPSK------------------------------------KVVGQSHLDSNIDDQEIV 138
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
T C + E + P S S+LY Q+SP+ S +E+ T + + D
Sbjct: 139 TNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESETTD----SVPSDEES 190
Query: 982 LLEQSGWQQTNVDGKGYLLN 1041
+ + W++ N++GK YL N
Sbjct: 191 VEGRPHWRKRNIEGKQYLSN 210
>ref|XP_857460.1| PREDICTED: similar to Interferon regulatory factor 2 (IRF-2)
isoform 3 [Canis familiaris].
Length = 125
Score = 197 bits (501), Expect = 3e-50
Identities = 89/125 (71%), Positives = 104/125 (83%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 622 KERKS 636
K R S
Sbjct: 121 KARTS 125
>ref|XP_546793.2| PREDICTED: similar to interferon regulatory factor 8 [Canis
familiaris].
Length = 426
Score = 119 bits (298), Expect = 1e-26
Identities = 57/140 (40%), Positives = 86/140 (61%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
R+R WL QI+SN PGLIW N E+ +F+IPWKHA K ++ DA +F++WA+ G++K
Sbjct: 9 RLRQWLIEQIDSNMYPGLIWENDEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSK 639
G+K +P TWK RCA+N PD EEV D+S+ S +VYR++P + ++K +
Sbjct: 69 EGDK-AEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EEEQKCKLGM 124
Query: 640 SSRDAKCKAKKKSCGESSPD 699
++ + + CG S D
Sbjct: 125 ATPGCVSEITEMECGRSEID 144
>ref|XP_539383.2| PREDICTED: similar to interferon regulatory factor 5 isoform a
[Canis familiaris].
Length = 569
Score = 113 bits (282), Expect = 7e-25
Identities = 54/128 (42%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +1
Query: 214 RDPRAPLP-DSACCRANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAK 390
RDP PL + RA P R+R++PWL Q+NS Q PGL W+N E F IPW+HA +
Sbjct: 58 RDPPDPLAMNQPAPRAPPPPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFCIPWRHATR 117
Query: 391 HGWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGS 570
HG D +F++WA TG+Y G E DP WKAN RCA+N D + D R+
Sbjct: 118 HGPSQEGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPP 177
Query: 571 SAVRVYRM 594
++Y +
Sbjct: 178 QPYKIYEV 185
>ref|XP_849977.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 2 [Canis familiaris].
Length = 424
Score = 106 bits (265), Expect = 6e-23
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 11 KLRNWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 70
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-KNQRKERKS 636
G+ E P WK RCA+N P+ EEV + G+ +VYR+LP T Q +KS
Sbjct: 71 EGDME-GPAIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLPSGTLPAQPGTQKS 129
Query: 637 KSSRDAKCKAKKKSCGESSPDTFSDGLSSSTL 732
S R + ++ E T +G S +L
Sbjct: 130 PSKRHHSSVSSER---EEDERTVKNGAPSPSL 158
>ref|XP_860263.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 3 [Canis familiaris].
Length = 410
Score = 106 bits (265), Expect = 6e-23
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 11 KLRNWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 70
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-KNQRKERKS 636
G+ E P WK RCA+N P+ EEV + G+ +VYR+LP T Q +KS
Sbjct: 71 EGDME-GPAIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLPSGTLPAQPGTQKS 129
Query: 637 KSSRDAKCKAKKKSCGESSPDTFSDGLSSSTL 732
S R + ++ E T +G S +L
Sbjct: 130 PSKRHHSSVSSER---EEDERTVKNGAPSPSL 158
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 83,001,686
Number of extensions: 2549252
Number of successful extensions: 10327
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 10274
Number of HSP's successfully gapped: 13
Length of query: 607
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 498
Effective length of database: 15,240,880
Effective search space: 7589958240
Effective search space used: 7589958240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003238
(1823 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002189.1| interferon regulatory factor 1 [Homo sapiens]. 609 e-174
Alignment gi|NP_002190.2| interferon regulatory factor 2 [Homo sapiens]. 229 8e-60
Alignment gi|NP_002154.1| interferon regulatory factor 8 [Homo sapiens]. 117 3e-26
Alignment gi|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Ho... 115 1e-25
Alignment gi|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo ... 115 1e-25
Alignment gi|NP_001229381.1| interferon regulatory factor 5 isoform e [Ho... 109 7e-24
Alignment gi|NP_001092097.2| interferon regulatory factor 5 isoform b [Ho... 109 7e-24
Alignment gi|NP_001092100.1| interferon regulatory factor 5 isoform b [Ho... 109 7e-24
Alignment gi|NP_001092099.1| interferon regulatory factor 5 isoform d [Ho... 109 7e-24
Alignment gi|NP_116032.1| interferon regulatory factor 5 isoform b [Homo ... 109 7e-24
>ref|NP_002189.1| interferon regulatory factor 1 [Homo sapiens].
Length = 325
Score = 609 bits (1570), Expect = e-174
Identities = 292/326 (89%), Positives = 308/326 (94%), Gaps = 4/326 (1%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
KERKSKSSRDAK KAK+KSCG+SSPDTFSDGLSSSTLPDDHSSYT GY+ QDL++EQAL
Sbjct: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYM-QDLEVEQAL 179
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
TPALSPCA+SSTLP+W IPVE+VPDSTSDLYNFQVSPMPSTSEA TDEDEEGKL EDIMK
Sbjct: 180 TPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMK 239
Query: 982 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGL----ISSDLK 1149
LLEQS WQ TNVDGKGYLLNEPG QPT+VYGDFSCKEEPE++SPGG GL + +DLK
Sbjct: 240 LLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLK 299
Query: 1150 NVDTSWLDNLLTPVRLPSIQAIPCAP 1227
N+D +WLD+LLTPVRLPSIQAIPCAP
Sbjct: 300 NMDATWLDSLLTPVRLPSIQAIPCAP 325
>ref|NP_002190.2| interferon regulatory factor 2 [Homo sapiens].
Length = 349
Score = 229 bits (583), Expect = 8e-60
Identities = 124/274 (45%), Positives = 172/274 (62%), Gaps = 14/274 (5%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLS---------SSTLPDDHSS-----YTA 759
K +K K+ ++ K K K+ ESS S+G+S +ST+ ++ S
Sbjct: 121 KGKKPKTEKEDKVKHIKQEPVESSLG-LSNGVSDLSPEYAVLTSTIKNEVDSTVNIIVVG 179
Query: 760 QGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAAT 939
Q ++ +++ ++ +T C + E + P S S+LY Q+SP+ S +E+ T
Sbjct: 180 QSHLDSNIENQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESET 235
Query: 940 DEDEEGKLTEDIMKLLEQSGWQQTNVDGKGYLLN 1041
+ + D + W++ N++GK YL N
Sbjct: 236 TD----SVPSDEESAEGRPHWRKRNIEGKQYLSN 265
>ref|NP_002154.1| interferon regulatory factor 8 [Homo sapiens].
Length = 426
Score = 117 bits (294), Expect = 3e-26
Identities = 56/140 (40%), Positives = 87/140 (62%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
R+R WL QI+S+ PGLIW N+E+ +F+IPWKHA K ++ DA +F++WA+ G++K
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSK 639
G+K +P TWK RCA+N PD EEV D+S+ S +VYR++P + ++K +
Sbjct: 69 EGDK-AEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EEEQKCKLGV 124
Query: 640 SSRDAKCKAKKKSCGESSPD 699
++ + + CG S D
Sbjct: 125 ATAGCVNEVTEMECGRSEID 144
>ref|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Homo sapiens].
Length = 450
Score = 115 bits (289), Expect = 1e-25
Identities = 50/116 (43%), Positives = 77/116 (66%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R WL QI+S + PGL+W N+E+ IF+IPWKHA K ++ +DA LF++WA+ G+++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKE 627
G +PDP TWK RCA+N D EE+ ++S+ S +VYR++P K K+
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQ 138
>ref|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo sapiens].
Length = 451
Score = 115 bits (289), Expect = 1e-25
Identities = 50/116 (43%), Positives = 77/116 (66%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R WL QI+S + PGL+W N+E+ IF+IPWKHA K ++ +DA LF++WA+ G+++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKE 627
G +PDP TWK RCA+N D EE+ ++S+ S +VYR++P K K+
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQ 138
>ref|NP_001229381.1| interferon regulatory factor 5 isoform e [Homo sapiens].
Length = 412
Score = 109 bits (273), Expect = 7e-24
Identities = 48/113 (42%), Positives = 68/113 (60%)
Frame = +1
Query: 256 ANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW 435
A P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++W
Sbjct: 8 APTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAW 67
Query: 436 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
A TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 68 AKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|NP_001092097.2| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 109 bits (273), Expect = 7e-24
Identities = 48/113 (42%), Positives = 68/113 (60%)
Frame = +1
Query: 256 ANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW 435
A P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++W
Sbjct: 8 APTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAW 67
Query: 436 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
A TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 68 AKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|NP_001092100.1| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 109 bits (273), Expect = 7e-24
Identities = 48/113 (42%), Positives = 68/113 (60%)
Frame = +1
Query: 256 ANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW 435
A P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++W
Sbjct: 8 APTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAW 67
Query: 436 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
A TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 68 AKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|NP_001092099.1| interferon regulatory factor 5 isoform d [Homo sapiens].
Length = 514
Score = 109 bits (273), Expect = 7e-24
Identities = 48/113 (42%), Positives = 68/113 (60%)
Frame = +1
Query: 256 ANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW 435
A P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++W
Sbjct: 8 APTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAW 67
Query: 436 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
A TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 68 AKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|NP_116032.1| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 109 bits (273), Expect = 7e-24
Identities = 48/113 (42%), Positives = 68/113 (60%)
Frame = +1
Query: 256 ANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW 435
A P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++W
Sbjct: 8 APTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAW 67
Query: 436 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
A TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 68 AKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 81,528,485
Number of extensions: 2514638
Number of successful extensions: 10205
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 10149
Number of HSP's successfully gapped: 19
Length of query: 607
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,737,052
Effective search space: 7353788948
Effective search space used: 7353788948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003238
(1823 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152868.1| interferon regulatory factor 1 isoform a [Mu... 556 e-158
Alignment gi|NP_032416.1| interferon regulatory factor 1 isoform a [Mus m... 556 e-158
Alignment gi|NP_001152865.1| interferon regulatory factor 1 isoform b [Mu... 528 e-150
Alignment gi|NP_032417.3| interferon regulatory factor 2 [Mus musculus]. 224 2e-58
Alignment gi|NP_032346.1| interferon regulatory factor 8 [Mus musculus]. 116 7e-26
Alignment gi|NP_038702.1| interferon regulatory factor 4 [Mus musculus]. 115 1e-25
Alignment gi|NP_036187.1| interferon regulatory factor 5 [Mus musculus]. 109 8e-24
Alignment gi|NP_058547.2| interferon regulatory factor 6 [Mus musculus]. 106 7e-23
Alignment gi|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mu... 99 8e-21
Alignment gi|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mu... 97 4e-20
>ref|NP_001152868.1| interferon regulatory factor 1 isoform a [Mus musculus].
Length = 329
Score = 556 bits (1432), Expect = e-158
Identities = 266/329 (80%), Positives = 297/329 (90%), Gaps = 7/329 (2%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT+NQR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTRNQR 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
KERKSKSSRD K K K+K CG+ SPDTFSDGLSSSTLPDDHSSYT QGY+GQDLD+E+ +
Sbjct: 121 KERKSKSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPDDHSSYTTQGYLGQDLDMERDI 180
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
TPALSPC +SS+L EW + ++I+PDST+DLYN QVSPMPSTSEAATDEDEEGK+ ED+MK
Sbjct: 181 TPALSPCVVSSSLSEWHMQMDIIPDSTTDLYNLQVSPMPSTSEAATDEDEEGKIAEDLMK 240
Query: 982 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGL----ISSDLK 1149
L EQS WQ T++DGKGYLLNEPG Q ++VYGDFSCKEEPE++SP G G+ + +++K
Sbjct: 241 LFEQSEWQPTHIDGKGYLLNEPGTQLSSVYGDFSCKEEPEIDSPRGDIGIGIQHVFTEMK 300
Query: 1150 NVDT-SWLDNLL-TPVRL-PSIQAIPCAP 1227
N+D+ W+D+LL VRL PSIQAIPCAP
Sbjct: 301 NMDSIMWMDSLLGNSVRLPPSIQAIPCAP 329
>ref|NP_032416.1| interferon regulatory factor 1 isoform a [Mus musculus].
Length = 329
Score = 556 bits (1432), Expect = e-158
Identities = 266/329 (80%), Positives = 297/329 (90%), Gaps = 7/329 (2%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT+NQR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTRNQR 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
KERKSKSSRD K K K+K CG+ SPDTFSDGLSSSTLPDDHSSYT QGY+GQDLD+E+ +
Sbjct: 121 KERKSKSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPDDHSSYTTQGYLGQDLDMERDI 180
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
TPALSPC +SS+L EW + ++I+PDST+DLYN QVSPMPSTSEAATDEDEEGK+ ED+MK
Sbjct: 181 TPALSPCVVSSSLSEWHMQMDIIPDSTTDLYNLQVSPMPSTSEAATDEDEEGKIAEDLMK 240
Query: 982 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGL----ISSDLK 1149
L EQS WQ T++DGKGYLLNEPG Q ++VYGDFSCKEEPE++SP G G+ + +++K
Sbjct: 241 LFEQSEWQPTHIDGKGYLLNEPGTQLSSVYGDFSCKEEPEIDSPRGDIGIGIQHVFTEMK 300
Query: 1150 NVDT-SWLDNLL-TPVRL-PSIQAIPCAP 1227
N+D+ W+D+LL VRL PSIQAIPCAP
Sbjct: 301 NMDSIMWMDSLLGNSVRLPPSIQAIPCAP 329
>ref|NP_001152865.1| interferon regulatory factor 1 isoform b [Mus musculus].
Length = 304
Score = 528 bits (1360), Expect = e-150
Identities = 245/286 (85%), Positives = 267/286 (93%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT+NQR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTRNQR 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
KERKSKSSRD K K K+K CG+ SPDTFSDGLSSSTLPDDHSSYT QGY+GQDLD+E+ +
Sbjct: 121 KERKSKSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPDDHSSYTTQGYLGQDLDMERDI 180
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
TPALSPC +SS+L EW + ++I+PDST+DLYN QVSPMPSTSEAATDEDEEGK+ ED+MK
Sbjct: 181 TPALSPCVVSSSLSEWHMQMDIIPDSTTDLYNLQVSPMPSTSEAATDEDEEGKIAEDLMK 240
Query: 982 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGG 1119
L EQS WQ T++DGKGYLLNEPG Q ++VYGDFSCKEEPE++SP G
Sbjct: 241 LFEQSEWQPTHIDGKGYLLNEPGTQLSSVYGDFSCKEEPEIDSPRG 286
>ref|NP_032417.3| interferon regulatory factor 2 [Mus musculus].
Length = 349
Score = 224 bits (571), Expect = 2e-58
Identities = 121/274 (44%), Positives = 171/274 (62%), Gaps = 14/274 (5%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDRSIKKGNNAFRVYRMLPLSERPSK 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLS---------SSTLPDDHSS-----YTA 759
K +K K+ ++ + K K+ ESS S+G+S +S + ++ S
Sbjct: 121 KGKKPKTEKEERVKHIKQEPVESSLG-LSNGVSGFSPEYAVLTSAIKNEVDSTVNIIVVG 179
Query: 760 QGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAAT 939
Q ++ +++ ++ +T C + E + P S S+LY Q+SP+ S +E+ T
Sbjct: 180 QSHLDSNIEDQEIVTNPPDICQVVEVTTE----SDDQPVSMSELYPLQISPVSSYAESET 235
Query: 940 DEDEEGKLTEDIMKLLEQSGWQQTNVDGKGYLLN 1041
+ + D + W++ +++GK YL N
Sbjct: 236 TD----SVASDEENAEGRPHWRKRSIEGKQYLSN 265
>ref|NP_032346.1| interferon regulatory factor 8 [Mus musculus].
Length = 424
Score = 116 bits (290), Expect = 7e-26
Identities = 55/137 (40%), Positives = 84/137 (61%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
R+R WL QI+S+ PGLIW N E+ +F+IPWKHA K ++ DA +F++WA+ G++K
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSK 639
G+K +P TWK RCA+N PD EEV D+S+ S +VYR++P + ++K +
Sbjct: 69 EGDK-AEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EEEQKCKLGV 124
Query: 640 SSRDAKCKAKKKSCGES 690
+ + + CG S
Sbjct: 125 APAGCMSEVPEMECGRS 141
>ref|NP_038702.1| interferon regulatory factor 4 [Mus musculus].
Length = 450
Score = 115 bits (288), Expect = 1e-25
Identities = 49/116 (42%), Positives = 77/116 (66%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R WL QI+S + PGL+W N+E+ +F+IPWKHA K ++ +DA LF++WA+ G+++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSVFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKE 627
G +PDP TWK RCA+N D EE+ ++S+ S +VYR++P K K+
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQ 138
>ref|NP_036187.1| interferon regulatory factor 5 [Mus musculus].
Length = 497
Score = 109 bits (272), Expect = 8e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Frame = +1
Query: 265 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 444
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 445 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFQLFYDGPRDMPPQPYKIYEV 120
>ref|NP_058547.2| interferon regulatory factor 6 [Mus musculus].
Length = 467
Score = 106 bits (264), Expect = 7e-23
Identities = 41/107 (38%), Positives = 70/107 (65%)
Frame = +1
Query: 274 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGR 453
R+R++PWL Q++S PGLIW++++ FQIPWKHA +H ++ +F++WA+ TG+
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 454 YKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
Y+ G +PDP WKA RCA+N + + D ++ + V++Y++
Sbjct: 67 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQV 113
>ref|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mus musculus].
Length = 465
Score = 99.4 bits (246), Expect = 8e-21
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Frame = +1
Query: 220 PRAPLPDSACCRANMPITRMR----MRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAA 387
P PL R M ++R +R W+ Q+ S PG+ W + + +F+IPWKHA
Sbjct: 53 PPTPLAKRGMVRRRMASGKVRCTRKLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAG 112
Query: 388 KHGWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKG 567
K + ++DA +F++WA+ ++K G+ P WK RCA+N + EEV ++ R
Sbjct: 113 KQDFREDQDAAIFKAWALFKEKHKDGD-IGHPAVWKTRLRCALNKSSEFEEVPERGRMDV 171
Query: 568 SSAVRVYRMLPPLT-KNQRKERKSKSSRDAKCKAKKK 675
+ +VYR+LP T NQ + +KS R C + ++
Sbjct: 172 AEPYKVYRILPAGTLPNQPRNQKSPCKRSISCVSPER 208
>ref|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mus musculus].
Length = 417
Score = 97.1 bits (240), Expect = 4e-20
Identities = 45/133 (33%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R W+ Q+ S PG+ W + + +F+IPWKHA K + ++DA +F++WA+ ++K
Sbjct: 29 KLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFKEKHK 88
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-KNQRKERKS 636
G+ P WK RCA+N + EEV ++ R + +VYR+LP T NQ + +KS
Sbjct: 89 DGD-IGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGTLPNQPRNQKS 147
Query: 637 KSSRDAKCKAKKK 675
R C + ++
Sbjct: 148 PCKRSISCVSPER 160
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,767,643
Number of extensions: 2088215
Number of successful extensions: 8260
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 8195
Number of HSP's successfully gapped: 13
Length of query: 607
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 500
Effective length of database: 12,403,707
Effective search space: 6201853500
Effective search space used: 6201853500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003238
(1823 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa]. 668 0.0
Alignment gi|XP_003133382.2| PREDICTED: interferon regulatory factor 2-li... 202 5e-52
Alignment gi|XP_003134757.2| PREDICTED: interferon regulatory factor 5-li... 108 8e-24
Alignment gi|XP_003134732.1| PREDICTED: interferon regulatory factor 5-li... 108 8e-24
Alignment gi|XP_003134731.1| PREDICTED: interferon regulatory factor 5-li... 108 8e-24
Alignment gi|NP_999443.1| interferon regulatory factor 6 [Sus scrofa]. 106 5e-23
Alignment gi|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa]. 102 9e-22
Alignment gi|NP_998935.1| interferon regulatory factor 3 [Sus scrofa]. 77 3e-14
Alignment gi|NP_001090897.1| interferon regulatory factor 7 [Sus scrofa]. 64 3e-10
Alignment gi|XP_003359988.1| PREDICTED: interferon regulatory factor 4-li... 55 1e-07
>ref|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa].
Length = 322
Score = 668 bits (1724), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
Query: 622 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 801
KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL
Sbjct: 121 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQAL 180
Query: 802 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 981
TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK
Sbjct: 181 TPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMK 240
Query: 982 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGLISSDLKNVDT 1161
LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGLISSDLKNVDT
Sbjct: 241 LLEQSGWQQTNVDGKGYLLNEPGAQPTAVYGDFSCKEEPEVESPGGYTGLISSDLKNVDT 300
Query: 1162 SWLDNLLTPVRLPSIQAIPCAP 1227
SWLDNLLTPVRLPSIQAIPCAP
Sbjct: 301 SWLDNLLTPVRLPSIQAIPCAP 322
>ref|XP_003133382.2| PREDICTED: interferon regulatory factor 2-like [Sus scrofa].
Length = 236
Score = 202 bits (514), Expect = 5e-52
Identities = 113/228 (49%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 621
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 622 KERKSKSSRDAKCK--AKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQGYIGQDLDIEQ 795
K +K K+ ++ + K K +C + S + T P +LD
Sbjct: 121 KGKKPKTEKEDRVKHIKVKDTCSHIPVGSVSQVVRLHTDPG-------------NLD--- 164
Query: 796 ALTPALSPCAISSTLP---EWRIPVEIVP---DSTSDLYNFQVSPMPS 921
T + SP SS P W I P +ST Y Q +P PS
Sbjct: 165 -PTQSDSPPRFSSRPPLQEAWPTHCHIHPCELNSTRCFYQLQSAPPPS 211
>ref|XP_003134757.2| PREDICTED: interferon regulatory factor 5-like, partial [Sus
scrofa].
Length = 366
Score = 108 bits (271), Expect = 8e-24
Identities = 47/110 (42%), Positives = 65/110 (59%)
Frame = +1
Query: 265 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 444
P R+R++PWL Q+NS Q PGL W+N E F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 445 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|XP_003134732.1| PREDICTED: interferon regulatory factor 5-like isoform 2 [Sus
scrofa].
Length = 487
Score = 108 bits (271), Expect = 8e-24
Identities = 47/110 (42%), Positives = 65/110 (59%)
Frame = +1
Query: 265 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 444
P R+R++PWL Q+NS Q PGL W+N E F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 445 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|XP_003134731.1| PREDICTED: interferon regulatory factor 5-like isoform 1 [Sus
scrofa].
Length = 503
Score = 108 bits (271), Expect = 8e-24
Identities = 47/110 (42%), Positives = 65/110 (59%)
Frame = +1
Query: 265 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 444
P R+R++PWL Q+NS Q PGL W+N E F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 445 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|NP_999443.1| interferon regulatory factor 6 [Sus scrofa].
Length = 467
Score = 106 bits (264), Expect = 5e-23
Identities = 41/107 (38%), Positives = 70/107 (65%)
Frame = +1
Query: 274 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGR 453
R+R++PWL Q++S PGLIW++++ FQIPWKHA +H ++ +F++WA+ TG+
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 454 YKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 594
Y+ G +PDP WKA RCA+N + + D ++ + V++Y++
Sbjct: 67 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQV 113
>ref|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa].
Length = 411
Score = 102 bits (253), Expect = 9e-22
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Frame = +1
Query: 280 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 459
++R W+ Q+ S Q PG+ W + + + +IPWKHA K + ++DA F++WAI G+YK
Sbjct: 11 KLRNWVVEQVESGQFPGVCWDDDAKTMSRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 70
Query: 460 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPP--LTKNQRKERK 633
G+ E P WK RCA+N + EEV + G+ +VYR+LPP L ++
Sbjct: 71 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRGGAEPYKVYRLLPPGTLPAQPGSQKL 129
Query: 634 SKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQ 762
R + +K+ E T + LS S L D + A+
Sbjct: 130 PSKRRHSSVTCEKE---EDEVTTKNCTLSPSILQDPFKNELAE 169
>ref|NP_998935.1| interferon regulatory factor 3 [Sus scrofa].
Length = 419
Score = 77.0 bits (188), Expect = 3e-14
Identities = 35/100 (35%), Positives = 57/100 (57%)
Frame = +1
Query: 262 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 441
M + R+ PWL Q+N Q+ G+ W+++ F+IPWKH + +D +F++WA
Sbjct: 1 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQ-QEDFGIFQAWAE 59
Query: 442 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRN 561
+G Y G+ +PD TWK NFR A+N + +D S++
Sbjct: 60 ASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD 99
>ref|NP_001090897.1| interferon regulatory factor 7 [Sus scrofa].
Length = 487
Score = 63.9 bits (154), Expect = 3e-10
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Frame = +1
Query: 226 APLPDSACCRANMPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDI 405
A PD C R+ WL +++S + GL W+++ F++PWKH A+
Sbjct: 2 AAAPDRGC-------PRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG- 53
Query: 406 NKDACLFRSWAIHTGRYKAGEKE---PDPK-----TWKANFRCAMNSLPDIEEVKDQSRN 561
D+ +F++WA+ GR+ E P P+ +WK NFRCA++S ++D S +
Sbjct: 54 ESDSRIFKAWAVARGRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD 113
Query: 562 KGSSAVRVYRMLPPL 606
+ +VY + P L
Sbjct: 114 P-TDPHKVYMINPEL 127
>ref|XP_003359988.1| PREDICTED: interferon regulatory factor 4-like [Sus scrofa].
Length = 438
Score = 55.1 bits (131), Expect = 1e-07
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Frame = +1
Query: 430 SWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRML---- 597
+WAIH G++ G + DP TWK RCA+N D EV+++S+ S+ +VYR++
Sbjct: 102 AWAIHKGKHLEGIDKEDPSTWKTRLRCALNKSADFCEVRERSQLDISNPYKVYRLVSDGA 161
Query: 598 --PPLTKNQRKERKSKSSRDAKCKAKKKSCGESSPD 699
P Q ++ + C+ + G ++ D
Sbjct: 162 HGPEEDIPQSQQEPPGEGTEPACRTDQDGSGLATED 197
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,605,932
Number of extensions: 1611390
Number of successful extensions: 6894
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6858
Number of HSP's successfully gapped: 10
Length of query: 607
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 502
Effective length of database: 8,729,747
Effective search space: 4382332994
Effective search space used: 4382332994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003238
(1823 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1322 0.0
Sscrofa_Chr15 70 5e-09
>Sscrofa_Chr02
|| Length = 162569375
Score = 1322 bits (667), Expect = 0.0
Identities = 705/711 (99%), Gaps = 5/711 (0%)
Strand = Plus / Minus
Query: 1117 gggtatactgggctgatatcttcagatctgaagaacgtggacaccagctggctggacaac 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230781 gggtatactgggctgatatcttcagatctgaagaacgtggacaccagctggctggacaac 140230722
Query: 1177 ctgctgaccccagtcaggctgccctccatccaagccattccttgtgcaccgtaggcgggc 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230721 ctgctgaccccagtcaggctgccctccatccaagccattccttgtgcaccgtaggcgggc 140230662
Query: 1237 ctttggctcccttttagtcctctaggtgagcgggacctggcatcatggtggctgtggtgc 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230661 ctttggctcccttttagtcctctaggtgagcgggacctggcatcatggtggctgtggtgc 140230602
Query: 1297 agagaagcaggactcctgtggcctcttgacatgacaaagtgtgaccccactgctgaccgg 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230601 agagaagcaggactcctgtggcctcttgacatgacaaagtgtgaccccactgctgaccgg 140230542
Query: 1357 ggatggggccagtttccttggaacaatggcctcttggggcctggcaagccagatctggac 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230541 ggatggggccagtttccttggaacaatggcctcttggggcctggcaagccagatctggac 140230482
Query: 1417 tcatgttgtggggtaaagctggccttgtctcctgggaagatgggcttctgagagtggtgt 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230481 tcatgttgtggggtaaagctggccttgtctcctgggaagatgggcttctgagagtggtgt 140230422
Query: 1477 gtcaggaagaggtctcagacaggagtcagcctccagctcttccctctgagcccagctgcc 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230421 gtcaggaagaggtctcagacaggagtcagcctccagctcttccctctgagcccagctgcc 140230362
Query: 1537 tggagacggtcttgctgtcactgagctggcccaagggaatggaccattgacctcagaaaa 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230361 tggagacggtcttgctgtcactgagctggcccaagggaatggaccattgacctcagaaaa 140230302
Query: 1597 gcacagcaccaaccccagggctggctctgcactaagagacgattgcactaagtgaatcct 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140230301 gcacagcaccaaccccagggctggctctgcactaagagacgattgcactaagtgaatcct 140230242
Query: 1657 gttcccaaagattcgcctcccttc-tagctgagccttggggactgttccaaagccagaga 1715
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 140230241 gttcccaaagattcgcctcccttcttagctgagccttggggactgttccaaagccagaga 140230182
Query: 1716 aatgtg-aggaagaatggggtcctgtgggacatgtcccctctgcctcagaagagctctgc 1774
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140230181 aatgtgaaggaagaatggggtcctgtgggacatgtcccctctgcctcagaggagctctgc 140230122
Query: 1775 cctgctcccctgc-tgggctggggggcttgtg-aaaaacatggcacttttc 1823
|||||| |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 140230121 cctgct-ccctgcttgggctggggggcttgtgaaaaaacatggcacttttc 140230072
Score = 505 bits (255), Expect = e-140
Identities = 255/255 (100%)
Strand = Plus / Minus
Query: 2 tttctcgcccgcgtcgcggttcaggcagtgcgcgccactccttcgtccaggcaggacgtg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140252684 tttctcgcccgcgtcgcggttcaggcagtgcgcgccactccttcgtccaggcaggacgtg 140252625
Query: 62 cgctcgagcccggccgagcagaggccaacgggagccgtgccaagccaaggccagccgtgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140252624 cgctcgagcccggccgagcagaggccaacgggagccgtgccaagccaaggccagccgtgc 140252565
Query: 122 ccagcggctccgcggcccgggcatcctctgccttctcttcgctcccaccgggaatcgcgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140252564 ccagcggctccgcggcccgggcatcctctgccttctcttcgctcccaccgggaatcgcgc 140252505
Query: 182 tcctcgcgcccacacagcagcccttgcagcgccgggaccctcgggcaccactgccggata 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140252504 tcctcgcgcccacacagcagcccttgcagcgccgggaccctcgggcaccactgccggata 140252445
Query: 242 gcgcttgctgccgag 256
|||||||||||||||
Sbjct: 140252444 gcgcttgctgccgag 140252430
Score = 355 bits (179), Expect = 5e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 447 aggccgatacaaagcaggggaaaaggagccggatcctaaaacatggaaggccaactttcg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140233477 aggccgatacaaagcaggggaaaaggagccggatcctaaaacatggaaggccaactttcg 140233418
Query: 507 ctgtgccatgaactccctgccagatattgaagaggtgaaggaccagagcaggaacaaggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140233417 ctgtgccatgaactccctgccagatattgaagaggtgaaggaccagagcaggaacaaggg 140233358
Query: 567 cagctcagctgtgcgggtgtaccggatgctcccacccctcaccaagaaccagaggaaag 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140233357 cagctcagctgtgcgggtgtaccggatgctcccacccctcaccaagaaccagaggaaag 140233299
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 980 agctcctggagcagtcagggtggcagcagacaaacgtggatgggaaggggtacctgctta 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140231510 agctcctggagcagtcagggtggcagcagacaaacgtggatgggaaggggtacctgctta 140231451
Query: 1040 atgaacctggggcccagcccaccgctgtctatggagacttcagctgcaaggaagagccag 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140231450 atgaacctggggcccagcccaccgctgtctatggagacttcagctgcaaggaagagccag 140231391
Query: 1100 aagttgaaagccctggggg 1118
|||||||||||||||||||
Sbjct: 140231390 aagttgaaagccctggggg 140231372
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 674 agtcatgtggggaatccagccctgataccttctctgatggactcagcagctccaccctgc 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140233041 agtcatgtggggaatccagccctgataccttctctgatggactcagcagctccaccctgc 140232982
Query: 734 ctgatgaccacagcagctacacagctcagggatacatcgggcaggacttggacattgaac 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140232981 ctgatgaccacagcagctacacagctcagggatacatcgggcaggacttggacattgaac 140232922
Query: 794 aggcccttactccag 808
|||||||||||||||
Sbjct: 140232921 aggcccttactccag 140232907
Score = 248 bits (125), Expect = 9e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 807 agcactgtcaccgtgtgccatcagtagtactctccctgagtggcgcatcccagtggaaat 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140232727 agcactgtcaccgtgtgccatcagtagtactctccctgagtggcgcatcccagtggaaat 140232668
Query: 867 tgtaccagacagcaccagcgacctgtacaacttccaggtgtcacccatgccctctacctc 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140232667 tgtaccagacagcaccagcgacctgtacaacttccaggtgtcacccatgccctctacctc 140232608
Query: 927 tgaag 931
|||||
Sbjct: 140232607 tgaag 140232603
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 349 gaggagatgatcttccagatcccatggaagcatgctgccaagcatggctgggacatcaac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140234303 gaggagatgatcttccagatcccatggaagcatgctgccaagcatggctgggacatcaac 140234244
Query: 409 aaggatgcctgcctgtttcggagctgggctattcacacagg 449
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140234243 aaggatgcctgcctgtttcggagctgggctattcacacagg 140234203
Score = 188 bits (95), Expect = 7e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 255 agccaacatgcccatcactcggatgcgcatgagaccctggctagagatgcaaattaattc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140251313 agccaacatgcccatcactcggatgcgcatgagaccctggctagagatgcaaattaattc 140251254
Query: 315 caaccaaatcccagggctgatctggattaataaag 349
|||||||||||||||||||||||||||||||||||
Sbjct: 140251253 caaccaaatcccagggctgatctggattaataaag 140251219
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 930 agctgcaacagatgaggacgaggaggggaaattaactgaggacatcatgaag 981
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140232278 agctgcaacagatgaggacgaggaggggaaattaactgaggacatcatgaag 140232227
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 624 agagagaaagtccaagtccagccgagatgctaagtgcaaggccaagaagaag 675
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140233181 agagagaaagtccaagtccagccgagatgctaagtgcaaggccaagaagaag 140233130
>Sscrofa_Chr15
|| Length = 157681621
Score = 69.9 bits (35), Expect = 5e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 478 gatcctaaaacatggaaggccaactttcgctgtgccatgaactccctgccagatattgaa 537
||||| |||||||||||||| || ||||| ||||||||||||||| |||| || ||||||
Sbjct: 52180047 gatccaaaaacatggaaggcgaattttcgatgtgccatgaactccttgcctgacattgaa 52179988
Query: 538 gaggtgaagga 548
|| || |||||
Sbjct: 52179987 gaagtcaagga 52179977
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,534,346
Number of extensions: 395
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 11
Length of query: 1823
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1801
Effective length of database: 2,808,408,574
Effective search space: 5057943841774
Effective search space used: 5057943841774
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)