Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003239
(988 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014896.1| haloacid dehalogenase-like hydrolase domain-... 429 e-120
>ref|NP_001014896.1| haloacid dehalogenase-like hydrolase domain-containing protein 3
[Bos taurus].
Length = 251
Score = 429 bits (1104), Expect = e-120
Identities = 209/247 (84%), Positives = 224/247 (90%)
Frame = +1
Query: 205 MVHRLPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSF 384
M HRL LRLLTWDVKDTLLRLRHPVGVEYA+KA AHGL+VEA ALGQAF Q YKAQS SF
Sbjct: 1 MAHRLQLRLLTWDVKDTLLRLRHPVGVEYATKARAHGLEVEATALGQAFKQAYKAQSQSF 60
Query: 385 PNYGLSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKAT 564
PNYGL GLTS QWWLD++ QTFHQAGV DAQ V PIA+QLY+DFS P TWQVLEGA+AT
Sbjct: 61 PNYGLGHGLTSHQWWLDLVQQTFHQAGVRDAQAVAPIAEQLYKDFSSPSTWQVLEGAEAT 120
Query: 565 LKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLA 744
L+GC+KRGL+LAVVSNFDRRLE+IL G+GLR++FDFVLTSEAAGWPKPDPRIFHEAL LA
Sbjct: 121 LRGCRKRGLKLAVVSNFDRRLEDILEGVGLREHFDFVLTSEAAGWPKPDPRIFHEALHLA 180
Query: 745 QVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHILPSLSHLLPA 924
QVEPA AHIGDSY+ DYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEH LPSLSHLLPA
Sbjct: 181 QVEPAVGAHIGDSYQRDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHFLPSLSHLLPA 240
Query: 925 LDRLEGS 945
LD LEGS
Sbjct: 241 LDYLEGS 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,237,285
Number of extensions: 1336446
Number of successful extensions: 5920
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5902
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,273,310
Effective search space: 3225768060
Effective search space used: 3225768060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003239
(988 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538805.2| PREDICTED: similar to haloacid dehalogenase-lik... 428 e-120
>ref|XP_538805.2| PREDICTED: similar to haloacid dehalogenase-like hydrolase domain
containing 3 [Canis familiaris].
Length = 251
Score = 428 bits (1101), Expect = e-120
Identities = 209/245 (85%), Positives = 223/245 (91%)
Frame = +1
Query: 217 LPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSFPNYG 396
LP+RLLTWDVKDTLLRLRHPVG EYA+KA AHGL+VEAA LGQAF Q Y+ QSHSFPNYG
Sbjct: 5 LPIRLLTWDVKDTLLRLRHPVGEEYAAKARAHGLEVEAATLGQAFRQAYRTQSHSFPNYG 64
Query: 397 LSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKATLKGC 576
LSQGLTSR+WWLDV+LQTF+ AGV DAQ V PIADQLYEDFS P TWQVLEGA ATL+GC
Sbjct: 65 LSQGLTSRRWWLDVVLQTFYLAGVRDAQAVAPIADQLYEDFSKPCTWQVLEGAAATLRGC 124
Query: 577 QKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLAQVEP 756
+KRGLRLAVVSNFDRRLE+IL GLGLR++FDFVLTSEAAGWPKPDPRIFHEALRLAQVEP
Sbjct: 125 RKRGLRLAVVSNFDRRLEDILTGLGLREHFDFVLTSEAAGWPKPDPRIFHEALRLAQVEP 184
Query: 757 AATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHILPSLSHLLPALDRL 936
A AHIGDSY CDYKGA+ VGMHSFLV GPEPLD AVK SVPQEH+LPSLSHLLPALDRL
Sbjct: 185 AGAAHIGDSYLCDYKGAQGVGMHSFLVFGPEPLDSAVKCSVPQEHLLPSLSHLLPALDRL 244
Query: 937 EGSPL 951
EGS L
Sbjct: 245 EGSAL 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,029,160
Number of extensions: 1373017
Number of successful extensions: 5966
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5950
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 226
Effective length of database: 15,440,896
Effective search space: 3489642496
Effective search space used: 3489642496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003239
(988 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112496.1| haloacid dehalogenase-like hydrolase domain-con... 402 e-112
>ref|NP_112496.1| haloacid dehalogenase-like hydrolase domain-containing protein 3
[Homo sapiens].
Length = 251
Score = 402 bits (1032), Expect = e-112
Identities = 192/250 (76%), Positives = 216/250 (86%)
Frame = +1
Query: 205 MVHRLPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSF 384
M HRL +RLLTWDVKDTLLRLRHP+G YA+KA AHGL+VE +AL Q F Q Y+AQSHSF
Sbjct: 1 MAHRLQIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSF 60
Query: 385 PNYGLSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKAT 564
PNYGLS GLTSRQWWLDV+LQTFH AGV DAQ V PIA+QLY+DFSHP TWQVL+GA+ T
Sbjct: 61 PNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDT 120
Query: 565 LKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLA 744
L+ C+ RGLRLAV+SNFDRRLE IL GLGLR++FDFVLTSEAAGWPKPDPRIF EALRLA
Sbjct: 121 LRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLA 180
Query: 745 QVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHILPSLSHLLPA 924
+EP AH+GD+Y CDY+G RAVGMHSFLV GP+ LDP V+DSVP+EHILPSL+HLLPA
Sbjct: 181 HMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPA 240
Query: 925 LDRLEGSPLG 954
LD LEGS G
Sbjct: 241 LDCLEGSTPG 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,089,060
Number of extensions: 1339546
Number of successful extensions: 5664
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5629
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,901,872
Effective search space: 3367823072
Effective search space used: 3367823072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003239
(988 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077219.1| haloacid dehalogenase-like hydrolase domain-con... 387 e-108
>ref|NP_077219.1| haloacid dehalogenase-like hydrolase domain-containing protein 3
[Mus musculus].
Length = 251
Score = 387 bits (994), Expect = e-108
Identities = 188/247 (76%), Positives = 212/247 (85%)
Frame = +1
Query: 205 MVHRLPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSF 384
M HRL +RLLTWDVKDTL++LR PVG EYASKA AHG+ VE + QAF Q Y+AQSH+F
Sbjct: 1 MAHRLQMRLLTWDVKDTLIKLRRPVGEEYASKARAHGVVVEDITVEQAFRQAYRAQSHNF 60
Query: 385 PNYGLSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKAT 564
PNYGLS+GLTSRQWW DV+L TF AGV DAQ + P+ADQLYEDFS P TWQVLEGA+ T
Sbjct: 61 PNYGLSRGLTSRQWWKDVVLHTFRLAGVPDAQAMTPVADQLYEDFSSPFTWQVLEGAEMT 120
Query: 565 LKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLA 744
LKGC+KRGL+LAVVSNFDRRLE+IL GLGLR++FDFVLTSEA G PKPDPRIF EAL+ A
Sbjct: 121 LKGCRKRGLKLAVVSNFDRRLEDILTGLGLREHFDFVLTSEAVGCPKPDPRIFREALQRA 180
Query: 745 QVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHILPSLSHLLPA 924
VEPA AH+GDSY CDY+G++AVGMHSFLVAG EPLD AV+DSVP+EHILPSLSHLLPA
Sbjct: 181 CVEPAVAAHVGDSYLCDYQGSQAVGMHSFLVAGSEPLDSAVRDSVPKEHILPSLSHLLPA 240
Query: 925 LDRLEGS 945
LD LE S
Sbjct: 241 LDLLEAS 247
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,002,430
Number of extensions: 1105060
Number of successful extensions: 4759
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4745
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 227
Effective length of database: 12,553,887
Effective search space: 2849732349
Effective search space used: 2849732349
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003239
(988 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361347.1| PREDICTED: haloacid dehalogenase-like hydrol... 264 5e-71
>ref|XP_003361347.1| PREDICTED: haloacid dehalogenase-like hydrolase domain-containing
protein 3-like, partial [Sus scrofa].
Length = 127
Score = 264 bits (675), Expect = 5e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Frame = +1
Query: 493 IADQLYEDFSHPHTWQVLEGAKATLKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDF 672
IADQLYEDFSHPHTWQVLEGAKATLKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDF
Sbjct: 1 IADQLYEDFSHPHTWQVLEGAKATLKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDF 60
Query: 673 VLTSEAAGWPKPDPRIFHEALRLAQVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEP 852
VLTSEAAGWPKPDPRIFHEALRLAQVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEP
Sbjct: 61 VLTSEAAGWPKPDPRIFHEALRLAQVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEP 120
Query: 853 LDPAVKD 873
LDPAVKD
Sbjct: 121 LDPAVKD 127
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,991,561
Number of extensions: 866438
Number of successful extensions: 3885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3881
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,879,129
Effective search space: 2042199670
Effective search space used: 2042199670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003239
(988 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894390.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 910 0.0
gb|GL894078.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 765 0.0
gb|GL893867.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 143 2e-31
>gb|GL894390.1| Sus scrofa unplaced genomic scaffold chrU_scaffold306
Length = 467
Score = 910 bits (459), Expect = 0.0
Identities = 465/467 (99%)
Strand = Plus / Plus
Query: 45 aagacgtgacccaggtgccagcagatctgacccacgaagcctggaaagagaagacgatca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagacgtgacccaggtgccagcagatctgacccacgaagcctggaaagagaagacgatca 60
Query: 105 ggttggggagggcagtgtcttgtccagctcaacctccccttggcccctgggacctgaggc 164
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 ggttggggagggcagtgtctcgtccagctcaacctcctcttggcccctgggacctgaggc 120
Query: 165 agaggctgacctggggtggacgggtcccctcctgcaggccatggtgcaccggctgccatt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaggctgacctggggtggacgggtcccctcctgcaggccatggtgcaccggctgccatt 180
Query: 225 acgactgctgacatgggacgtgaaggacacgctgctcaggctccgccaccctgtgggggt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acgactgctgacatgggacgtgaaggacacgctgctcaggctccgccaccctgtgggggt 240
Query: 285 ggaatatgccagcaaggccttggcccacgggctgcaggtggaggccgcggccctgggaca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaatatgccagcaaggccttggcccacgggctgcaggtggaggccgcggccctgggaca 300
Query: 345 agccttcccgcaggtgtacaaggctcaaagccacagctttcccaactatggcctgagcca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agccttcccgcaggtgtacaaggctcaaagccacagctttcccaactatggcctgagcca 360
Query: 405 gggcctcacctcccgccagtggtggctggacgtgatcctgcagaccttccatcaggcggg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gggcctcacctcccgccagtggtggctggacgtgatcctgcagaccttccatcaggcggg 420
Query: 465 tgttggggatgcccaggttgtgattcccattgctgaccagctctacg 511
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgttggggatgcccaggttgtgattcccattgctgaccagctctacg 467
>gb|GL894078.1| Sus scrofa unplaced genomic scaffold chrU_scaffold278
Length = 394
Score = 765 bits (386), Expect = 0.0
Identities = 392/394 (99%)
Strand = Plus / Plus
Query: 487 attcccattgctgaccagctctacgaggacttcagtcacccccacacctggcaggtgttg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attcccattgctgaccagctctacgaggacttcagtcacccccacacctggcaggtgttg 60
Query: 547 gagggggctaaggccaccctgaaggggtgccaaaaacgaggtctgaggctggcagtggtc 606
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 gagggggctaaggccaccctgaaggggtgccaaaaacgaggtctgagactggcagtggtc 120
Query: 607 tccaactttgaccgacgcctggagaacattctggtgggtcttggcctgcgggactacttc 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccaactttgaccgacgcctggagaacattctggtgggtcttggcctgcgggactacttc 180
Query: 667 gactttgtgctgacctctgaggctgccggctggcccaagcccgacccccgcattttccat 726
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 181 gactttgtgctgacctctgaggctgccggctggcccaagccagacccccgcattttccat 240
Query: 727 gaggccttgcgccttgcacaggtggaacctgcggcaacagcccatattggggacagttac 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggccttgcgccttgcacaggtggaacctgcggcaacagcccatattggggacagttac 300
Query: 787 cgctgtgattacaagggagcacgggctgtaggcatgcacagcttcctggtggctggcccg 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgctgtgattacaagggagcacgggctgtaggcatgcacagcttcctggtggctggcccg 360
Query: 847 gagcctctggatcctgcggtcaaggattctgtac 880
||||||||||||||||||||||||||||||||||
Sbjct: 361 gagcctctggatcctgcggtcaaggattctgtac 394
>gb|GL893867.1| Sus scrofa unplaced genomic scaffold chrU_scaffold259
Length = 350
Score = 143 bits (72), Expect = 2e-31
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 909 tcatctcctacctgcccttgaccgcctggagggctcacccttggggttttgagtctgatg 968
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tcatctcctacctgcccttgaccgcctggagggctcacccctggggttttgagtctgatg 60
Query: 969 agggaagcggtggggcctga 988
||||||| ||||||||||||
Sbjct: 61 agggaagtggtggggcctga 80
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,414,970
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 3
Length of query: 988
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 967
Effective length of database: 2,808,413,156
Effective search space: 2715735521852
Effective search space used: 2715735521852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)