Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003240
(1070 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014896.1| haloacid dehalogenase-like hydrolase domain-... 400 e-111
>ref|NP_001014896.1| haloacid dehalogenase-like hydrolase domain-containing protein 3 [Bos
taurus].
Length = 251
Score = 400 bits (1028), Expect = e-111
Identities = 196/247 (79%), Positives = 211/247 (85%)
Frame = +3
Query: 309 MVHRLPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSF 488
M HRL LRLLTWDVKDTLLRLRHPVGVEYA+KA AHGL+VEA ALGQAF Q YKAQS SF
Sbjct: 1 MAHRLQLRLLTWDVKDTLLRLRHPVGVEYATKARAHGLEVEATALGQAFKQAYKAQSQSF 60
Query: 489 PNYGLSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKAT 668
PNYGL GLTS QWWLD++ QTFHQAGV DAQ V PIA+QLY+DFS P TWQVLEGA+AT
Sbjct: 61 PNYGLGHGLTSHQWWLDLVQQTFHQAGVRDAQAVAPIAEQLYKDFSSPSTWQVLEGAEAT 120
Query: 669 LKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLA 848
L+GC+KRGL+LAVVSNFDRRLE+IL G+GLR++FDFVLTSEAAGWPKPDPRIFHEAL LA
Sbjct: 121 LRGCRKRGLKLAVVSNFDRRLEDILEGVGLREHFDFVLTSEAAGWPKPDPRIFHEALHLA 180
Query: 849 QVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHIXXXXXXXXXX 1028
QVEPA AHIGDSY+ DYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEH
Sbjct: 181 QVEPAVGAHIGDSYQRDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHFLPSLSHLLPA 240
Query: 1029 XXXXEGS 1049
EGS
Sbjct: 241 LDYLEGS 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,161,421
Number of extensions: 1412174
Number of successful extensions: 6199
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6182
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003240
(1070 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538805.2| PREDICTED: similar to haloacid dehalogenase-lik... 396 e-110
>ref|XP_538805.2| PREDICTED: similar to haloacid dehalogenase-like hydrolase domain
containing 3 [Canis familiaris].
Length = 251
Score = 396 bits (1018), Expect = e-110
Identities = 195/245 (79%), Positives = 209/245 (85%)
Frame = +3
Query: 321 LPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSFPNYG 500
LP+RLLTWDVKDTLLRLRHPVG EYA+KA AHGL+VEAA LGQAF Q Y+ QSHSFPNYG
Sbjct: 5 LPIRLLTWDVKDTLLRLRHPVGEEYAAKARAHGLEVEAATLGQAFRQAYRTQSHSFPNYG 64
Query: 501 LSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKATLKGC 680
LSQGLTSR+WWLDV+LQTF+ AGV DAQ V PIADQLYEDFS P TWQVLEGA ATL+GC
Sbjct: 65 LSQGLTSRRWWLDVVLQTFYLAGVRDAQAVAPIADQLYEDFSKPCTWQVLEGAAATLRGC 124
Query: 681 QKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLAQVEP 860
+KRGLRLAVVSNFDRRLE+IL GLGLR++FDFVLTSEAAGWPKPDPRIFHEALRLAQVEP
Sbjct: 125 RKRGLRLAVVSNFDRRLEDILTGLGLREHFDFVLTSEAAGWPKPDPRIFHEALRLAQVEP 184
Query: 861 AATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHIXXXXXXXXXXXXXX 1040
A AHIGDSY CDYKGA+ VGMHSFLV GPEPLD AVK SVPQEH+
Sbjct: 185 AGAAHIGDSYLCDYKGAQGVGMHSFLVFGPEPLDSAVKCSVPQEHLLPSLSHLLPALDRL 244
Query: 1041 EGSPL 1055
EGS L
Sbjct: 245 EGSAL 249
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,056,609
Number of extensions: 1449091
Number of successful extensions: 6313
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6307
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003240
(1070 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112496.1| haloacid dehalogenase-like hydrolase domain-con... 374 e-104
>ref|NP_112496.1| haloacid dehalogenase-like hydrolase domain-containing protein 3
[Homo sapiens].
Length = 251
Score = 374 bits (960), Expect = e-104
Identities = 180/250 (72%), Positives = 203/250 (81%)
Frame = +3
Query: 309 MVHRLPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSF 488
M HRL +RLLTWDVKDTLLRLRHP+G YA+KA AHGL+VE +AL Q F Q Y+AQSHSF
Sbjct: 1 MAHRLQIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSF 60
Query: 489 PNYGLSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKAT 668
PNYGLS GLTSRQWWLDV+LQTFH AGV DAQ V PIA+QLY+DFSHP TWQVL+GA+ T
Sbjct: 61 PNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDT 120
Query: 669 LKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLA 848
L+ C+ RGLRLAV+SNFDRRLE IL GLGLR++FDFVLTSEAAGWPKPDPRIF EALRLA
Sbjct: 121 LRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLA 180
Query: 849 QVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHIXXXXXXXXXX 1028
+EP AH+GD+Y CDY+G RAVGMHSFLV GP+ LDP V+DSVP+EHI
Sbjct: 181 HMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPA 240
Query: 1029 XXXXEGSPLG 1058
EGS G
Sbjct: 241 LDCLEGSTPG 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,104,552
Number of extensions: 1415739
Number of successful extensions: 6015
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5979
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003240
(1070 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077219.1| haloacid dehalogenase-like hydrolase domain-con... 360 1e-99
>ref|NP_077219.1| haloacid dehalogenase-like hydrolase domain-containing protein 3
[Mus musculus].
Length = 251
Score = 360 bits (923), Expect = 1e-99
Identities = 173/230 (75%), Positives = 197/230 (85%)
Frame = +3
Query: 309 MVHRLPLRLLTWDVKDTLLRLRHPVGVEYASKALAHGLQVEAAALGQAFPQVYKAQSHSF 488
M HRL +RLLTWDVKDTL++LR PVG EYASKA AHG+ VE + QAF Q Y+AQSH+F
Sbjct: 1 MAHRLQMRLLTWDVKDTLIKLRRPVGEEYASKARAHGVVVEDITVEQAFRQAYRAQSHNF 60
Query: 489 PNYGLSQGLTSRQWWLDVILQTFHQAGVGDAQVVIPIADQLYEDFSHPHTWQVLEGAKAT 668
PNYGLS+GLTSRQWW DV+L TF AGV DAQ + P+ADQLYEDFS P TWQVLEGA+ T
Sbjct: 61 PNYGLSRGLTSRQWWKDVVLHTFRLAGVPDAQAMTPVADQLYEDFSSPFTWQVLEGAEMT 120
Query: 669 LKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDFVLTSEAAGWPKPDPRIFHEALRLA 848
LKGC+KRGL+LAVVSNFDRRLE+IL GLGLR++FDFVLTSEA G PKPDPRIF EAL+ A
Sbjct: 121 LKGCRKRGLKLAVVSNFDRRLEDILTGLGLREHFDFVLTSEAVGCPKPDPRIFREALQRA 180
Query: 849 QVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEPLDPAVKDSVPQEHI 998
VEPA AH+GDSY CDY+G++AVGMHSFLVAG EPLD AV+DSVP+EHI
Sbjct: 181 CVEPAVAAHVGDSYLCDYQGSQAVGMHSFLVAGSEPLDSAVRDSVPKEHI 230
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,548,074
Number of extensions: 1167964
Number of successful extensions: 5058
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5045
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003240
(1070 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361347.1| PREDICTED: haloacid dehalogenase-like hydrol... 264 6e-71
>ref|XP_003361347.1| PREDICTED: haloacid dehalogenase-like hydrolase domain-containing
protein 3-like, partial [Sus scrofa].
Length = 127
Score = 264 bits (675), Expect = 6e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Frame = +3
Query: 597 IADQLYEDFSHPHTWQVLEGAKATLKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDF 776
IADQLYEDFSHPHTWQVLEGAKATLKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDF
Sbjct: 1 IADQLYEDFSHPHTWQVLEGAKATLKGCQKRGLRLAVVSNFDRRLENILVGLGLRDYFDF 60
Query: 777 VLTSEAAGWPKPDPRIFHEALRLAQVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEP 956
VLTSEAAGWPKPDPRIFHEALRLAQVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEP
Sbjct: 61 VLTSEAAGWPKPDPRIFHEALRLAQVEPAATAHIGDSYRCDYKGARAVGMHSFLVAGPEP 120
Query: 957 LDPAVKD 977
LDPAVKD
Sbjct: 121 LDPAVKD 127
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,872,079
Number of extensions: 915912
Number of successful extensions: 4103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4092
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003240
(1070 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894390.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 910 0.0
gb|GL894078.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 781 0.0
gb|GL895767.1| Sus scrofa unplaced genomic scaffold chrU_scaffold43 117 1e-23
gb|GL893867.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 92 7e-16
>gb|GL894390.1| Sus scrofa unplaced genomic scaffold chrU_scaffold306
Length = 467
Score = 910 bits (459), Expect = 0.0
Identities = 465/467 (99%)
Strand = Plus / Plus
Query: 149 aagacgtgacccaggtgccagcagatctgacccacgaagcctggaaagagaagacgatca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagacgtgacccaggtgccagcagatctgacccacgaagcctggaaagagaagacgatca 60
Query: 209 ggttggggagggcagtgtcttgtccagctcaacctccccttggcccctgggacctgaggc 268
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 ggttggggagggcagtgtctcgtccagctcaacctcctcttggcccctgggacctgaggc 120
Query: 269 agaggctgacctggggtggacgggtcccctcctgcaggccatggtgcaccggctgccatt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaggctgacctggggtggacgggtcccctcctgcaggccatggtgcaccggctgccatt 180
Query: 329 acgactgctgacatgggacgtgaaggacacgctgctcaggctccgccaccctgtgggggt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acgactgctgacatgggacgtgaaggacacgctgctcaggctccgccaccctgtgggggt 240
Query: 389 ggaatatgccagcaaggccttggcccacgggctgcaggtggaggccgcggccctgggaca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaatatgccagcaaggccttggcccacgggctgcaggtggaggccgcggccctgggaca 300
Query: 449 agccttcccgcaggtgtacaaggctcaaagccacagctttcccaactatggcctgagcca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agccttcccgcaggtgtacaaggctcaaagccacagctttcccaactatggcctgagcca 360
Query: 509 gggcctcacctcccgccagtggtggctggacgtgatcctgcagaccttccatcaggcggg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gggcctcacctcccgccagtggtggctggacgtgatcctgcagaccttccatcaggcggg 420
Query: 569 tgttggggatgcccaggttgtgattcccattgctgaccagctctacg 615
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgttggggatgcccaggttgtgattcccattgctgaccagctctacg 467
>gb|GL894078.1| Sus scrofa unplaced genomic scaffold chrU_scaffold278
Length = 394
Score = 781 bits (394), Expect = 0.0
Identities = 394/394 (100%)
Strand = Plus / Plus
Query: 591 attcccattgctgaccagctctacgaggacttcagtcacccccacacctggcaggtgttg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attcccattgctgaccagctctacgaggacttcagtcacccccacacctggcaggtgttg 60
Query: 651 gagggggctaaggccaccctgaaggggtgccaaaaacgaggtctgagactggcagtggtc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagggggctaaggccaccctgaaggggtgccaaaaacgaggtctgagactggcagtggtc 120
Query: 711 tccaactttgaccgacgcctggagaacattctggtgggtcttggcctgcgggactacttc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccaactttgaccgacgcctggagaacattctggtgggtcttggcctgcgggactacttc 180
Query: 771 gactttgtgctgacctctgaggctgccggctggcccaagccagacccccgcattttccat 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gactttgtgctgacctctgaggctgccggctggcccaagccagacccccgcattttccat 240
Query: 831 gaggccttgcgccttgcacaggtggaacctgcggcaacagcccatattggggacagttac 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggccttgcgccttgcacaggtggaacctgcggcaacagcccatattggggacagttac 300
Query: 891 cgctgtgattacaagggagcacgggctgtaggcatgcacagcttcctggtggctggcccg 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgctgtgattacaagggagcacgggctgtaggcatgcacagcttcctggtggctggcccg 360
Query: 951 gagcctctggatcctgcggtcaaggattctgtac 984
||||||||||||||||||||||||||||||||||
Sbjct: 361 gagcctctggatcctgcggtcaaggattctgtac 394
>gb|GL895767.1| Sus scrofa unplaced genomic scaffold chrU_scaffold43
Length = 117
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 101 ggcctgaccttccacgtcgcctgccctgttccaggatcttctgctgtgaagacgtgacc 159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ggcctgaccttccacgtcgcctgccctgttccaggatcttctgctgtgaagacgtgacc 1
>gb|GL893867.1| Sus scrofa unplaced genomic scaffold chrU_scaffold259
Length = 350
Score = 91.7 bits (46), Expect = 7e-16
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 1013 tcatctcctacctgccctttgacgcctggagggctcacccctggggttttgagtctga 1070
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatctcctacctgcccttgaccgcctggagggctcacccctggggttttgagtctga 58
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,832,125
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 4
Length of query: 1070
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1049
Effective length of database: 2,808,413,156
Effective search space: 2946025400644
Effective search space used: 2946025400644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)