Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003248
(840 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851348.1| chromogranin-A [Bos taurus]. 301 5e-82
>ref|NP_851348.1| chromogranin-A [Bos taurus].
Length = 449
Score = 301 bits (771), Expect = 5e-82
Identities = 162/219 (73%), Positives = 172/219 (78%), Gaps = 4/219 (1%)
Frame = +3
Query: 192 MRSXXXXXXXXCAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 371
MRS CAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVS+ECFETL
Sbjct: 1 MRSAAVLALLLCAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSKECFETL 60
Query: 372 RGDERILSILRHQNLLKELQDLALQGAKERSHQQKKQSSYEDELSEVLEKQNDQTELKEG 551
RGDERILSILRHQNLLKELQDLALQGAKER+HQQKK SSYEDELSEVLEK NDQ E KE
Sbjct: 61 RGDERILSILRHQNLLKELQDLALQGAKERTHQQKKHSSYEDELSEVLEKPNDQAEPKEV 120
Query: 552 TXXXXXXXXXXXRGDSKEVEKNDEDADGAKPQAS--LEPPQASEAEDQTPGEEEAA--ST 719
T R D KEVEK+DED+DG +PQAS L P E ++Q PGEEE A +
Sbjct: 121 TEEVSSKDAAEKRDDFKEVEKSDEDSDGDRPQASPGLGPGPKVEEDNQAPGEEEEAPSNA 180
Query: 720 HPLASLPSKKRPGAQAEEDHEGPSQGPVDREKGPSAKQG 836
HPLASLPS K PG QA+ED EGPSQGP REKG SA+QG
Sbjct: 181 HPLASLPSPKYPGPQAKEDSEGPSQGPASREKGLSAEQG 219
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 23,406,730
Number of extensions: 549849
Number of successful extensions: 3304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3244
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 179
Effective length of database: 14,339,486
Effective search space: 2566767994
Effective search space used: 2566767994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003248
(840 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,464,309
Number of extensions: 570005
Number of successful extensions: 3731
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3667
Number of HSP's successfully gapped: 0
Length of query: 280
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 179
Effective length of database: 15,507,568
Effective search space: 2775854672
Effective search space used: 2775854672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003248
(840 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001266.1| chromogranin-A preproprotein [Homo sapiens]. 288 4e-78
>ref|NP_001266.1| chromogranin-A preproprotein [Homo sapiens].
Length = 457
Score = 288 bits (737), Expect = 4e-78
Identities = 158/222 (71%), Positives = 168/222 (75%), Gaps = 7/222 (3%)
Frame = +3
Query: 192 MRSXXXXXXXXCAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 371
MRS CAGQV ALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
Sbjct: 1 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 60
Query: 372 RGDERILSILRHQNLLKELQDLALQGAKERSHQQKKQSSYEDELSEVLEKQNDQTELKEG 551
RGDERILSILRHQNLLKELQDLALQGAKER+HQQKK S +EDELSEVLE Q+ Q ELKE
Sbjct: 61 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA 120
Query: 552 TXXXXXXXXXXXRGDSKEVEKNDEDADGAKPQASLEPPQASEAE--DQTPG-----EEEA 710
R DSKE EK+ E DGA+PQA EP Q S+AE +Q PG EEEA
Sbjct: 121 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA 180
Query: 711 ASTHPLASLPSKKRPGAQAEEDHEGPSQGPVDREKGPSAKQG 836
+THP ASLPS+K PG QAE D EG SQG VDREKG SA+ G
Sbjct: 181 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPG 222
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,926,502
Number of extensions: 552619
Number of successful extensions: 3321
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3267
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 179
Effective length of database: 14,967,800
Effective search space: 2679236200
Effective search space used: 2679236200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003248
(840 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031719.1| chromogranin-A precursor [Mus musculus]. 192 3e-49
>ref|NP_031719.1| chromogranin-A precursor [Mus musculus].
Length = 463
Score = 192 bits (488), Expect = 3e-49
Identities = 116/238 (48%), Positives = 145/238 (60%), Gaps = 24/238 (10%)
Frame = +3
Query: 192 MRSXXXXXXXXCAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 371
MRS CAGQV ALPVNSPM KGDT+VMKC++EVISD+LSKPSPMPVS EC ETL
Sbjct: 1 MRSTAVLALLLCAGQVFALPVNSPMTKGDTKVMKCVLEVISDSLSKPSPMPVSPECLETL 60
Query: 372 RGDERILSILRHQNLLKELQDLALQGAKERSHQQKKQ--------------------SSY 491
+GDERILSILRHQNLLKELQDLALQGAKER+ Q KQ SS+
Sbjct: 61 QGDERILSILRHQNLLKELQDLALQGAKERAQQPLKQQQPPKQQQQQQQQQQQEQQHSSF 120
Query: 492 EDELSEVLEKQNDQTELKEGTXXXXXXXXXXXRGDSKEVEKNDEDA--DGAKPQASLEPP 665
EDELSEV E Q+ + ++ R DS + +++ +A +G +PQA EP
Sbjct: 121 EDELSEVFENQSPDAKHRDAAAEVPSRDTMEKRKDSDKGQQDGFEATTEGPRPQAFPEPN 180
Query: 666 QASE--AEDQTPGEEEAASTHPLASLPSKKRPGAQAEEDHEGPSQGPVDREKGPSAKQ 833
Q S + ++PGE+ A +T SLPS++ QA D E +G +++ AKQ
Sbjct: 181 QESPMMGDSESPGEDTATNTQSPTSLPSQEHVDPQATGDSE---RGLSAQQQARKAKQ 235
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,085,848
Number of extensions: 454287
Number of successful extensions: 2650
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2554
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 180
Effective length of database: 12,613,959
Effective search space: 2270512620
Effective search space used: 2270512620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003248
(840 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157477.2| chromogranin-A [Sus scrofa]. 385 e-107
>ref|NP_001157477.2| chromogranin-A [Sus scrofa].
Length = 448
Score = 385 bits (988), Expect = e-107
Identities = 196/216 (90%), Positives = 197/216 (91%)
Frame = +3
Query: 192 MRSXXXXXXXXCAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 371
MRS CAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
Sbjct: 1 MRSAAALALLLCAGQVIALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 60
Query: 372 RGDERILSILRHQNLLKELQDLALQGAKERSHQQKKQSSYEDELSEVLEKQNDQTELKEG 551
RGDERILSILRHQNLLKELQDLALQGAKERSHQQKKQSSYEDELSEVLEKQNDQTELKEG
Sbjct: 61 RGDERILSILRHQNLLKELQDLALQGAKERSHQQKKQSSYEDELSEVLEKQNDQTELKEG 120
Query: 552 TXXXXXXXXXXXRGDSKEVEKNDEDADGAKPQASLEPPQASEAEDQTPGEEEAASTHPLA 731
T RGDSKEVEKNDEDADGAKPQASLEPPQASEAEDQTPGEEEAASTHPLA
Sbjct: 121 TEEASSKEAAEKRGDSKEVEKNDEDADGAKPQASLEPPQASEAEDQTPGEEEAASTHPLA 180
Query: 732 SLPSKKRPGAQAEEDHEGPSQGPVDREKGPSAKQGP 839
SLPSKKRPGAQAEEDHEGPSQGPVDREKGPSA+QGP
Sbjct: 181 SLPSKKRPGAQAEEDHEGPSQGPVDREKGPSAEQGP 216
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,113,355
Number of extensions: 354930
Number of successful extensions: 2092
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2062
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 182
Effective length of database: 8,904,026
Effective search space: 1620532732
Effective search space used: 1620532732
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003248
(840 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 577 e-162
>Sscrofa_Chr07
|| Length = 134764511
Score = 577 bits (291), Expect = e-162
Identities = 294/295 (99%)
Strand = Plus / Plus
Query: 546 gagggcacagaagaggcgtcctccaaggaggctgcggaaaaaagaggagattctaaagag 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120962241 gagggcacagaagaggcgtcctccaaggaggctgcggaaaaaagaggagattctaaagag 120962300
Query: 606 gtggagaagaacgatgaagacgcagacggagccaagccccaggcctcgctggagccgccg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120962301 gtggagaagaacgatgaagacgcagacggagccaagccccaggcctcgctggagccgccg 120962360
Query: 666 caggcctcggaggctgaggaccagaccccgggggaggaggaggccgccagcacccacccc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120962361 caggcctcggaggctgaggaccagaccccgggggaggaggaggccgccagcacccacccc 120962420
Query: 726 ttagccagccttcccagcaagaaacgcccaggcgcacaggccgaggaggaccacgagggc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120962421 ttagccagccttcccagcaagaaacgcccaggcgcacaggccgaggaggaccacgagggc 120962480
Query: 786 ccctcccagggtccggtggacagagagaagggcccgagtgcaaagcaggggccgc 840
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 120962481 ccctcccagggtccggtggacagagagaagggcccgagtgcagagcaggggccgc 120962535
Score = 470 bits (237), Expect = e-130
Identities = 237/237 (100%)
Strand = Plus / Plus
Query: 1 tgcagtgccagagtcctgtgccgagaggaggtgggcaggtccccaggcgggcgcgcacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120954035 tgcagtgccagagtcctgtgccgagaggaggtgggcaggtccccaggcgggcgcgcacgg 120954094
Query: 61 agacgttgcgccccccatcccgcgccagtgtcgccgcagcccgccccgagcgaccagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120954095 agacgttgcgccccccatcccgcgccagtgtcgccgcagcccgccccgagcgaccagtcc 120954154
Query: 121 agctacccctcgcccgcgtgctcgccgcgcccggccccagaccgccagctgctccgcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120954155 agctacccctcgcccgcgtgctcgccgcgcccggccccagaccgccagctgctccgcgcc 120954214
Query: 181 ccgggttcgccatgcgctccgccgccgccctggcgctactgctctgcgccgggcaag 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120954215 ccgggttcgccatgcgctccgccgccgccctggcgctactgctctgcgccgggcaag 120954271
Score = 200 bits (101), Expect = 9e-49
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 446 aggagccaaggagaggtcccatcagcagaagaaacagagcagttatgaggatgaactctc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120959810 aggagccaaggagaggtcccatcagcagaagaaacagagcagttatgaggatgaactctc 120959869
Query: 506 agaggttctcgagaagcagaacgaccagactgagttgaagg 546
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 120959870 agaggttctcgagaagcagaacgaccagactgagttgaagg 120959910
Score = 190 bits (96), Expect = 8e-46
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 283 aggtgatgaagtgcatcgtcgaggtcatctctgacacgctgtccaagcccagccccatgc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120957486 aggtgatgaagtgcatcgtcgaggtcatctctgacacgctgtccaagcccagccccatgc 120957545
Query: 343 ctgtcagccaggagtgttttgagacactccgaggag 378
||||||||||||||||||||||||||||||||||||
Sbjct: 120957546 ctgtcagccaggagtgttttgagacactccgaggag 120957581
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 377 agatgaacggatcctctccatcctgcgacatcagaatttgctgaaagagctccaagacct 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120958440 agatgaacggatcctctccatcctgcgacatcagaatttgctgaaagagctccaagacct 120958499
Query: 437 cgctctccaagg 448
||||||||||||
Sbjct: 120958500 cgctctccaagg 120958511
Score = 101 bits (51), Expect = 6e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 236 agtcattgccctccctgtgaacagccctatgaataagggggacaccgaggt 286
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120955102 agtcattgccctccctgtgaacagccctatgaataagggggacaccgaggt 120955152
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,831,308
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 6
Length of query: 840
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 819
Effective length of database: 2,808,413,156
Effective search space: 2300090374764
Effective search space used: 2300090374764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)