Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003252
(1322 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polyp... 738 0.0
Alignment gi|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypept... 738 0.0
Alignment gi|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polyp... 614 e-176
Alignment gi|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypept... 614 e-176
Alignment gi|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polyp... 535 e-152
Alignment gi|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypept... 535 e-152
>ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
taurus].
Length = 389
Score = 738 bits (1904), Expect = 0.0
Identities = 369/389 (94%), Positives = 371/389 (95%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEPAEPNP 232
MLS RVPLATIADPQQ QLSPLKGLSLADKENTPP+LSGTRVLASKTARRIFQEP+EPNP
Sbjct: 1 MLSFRVPLATIADPQQQQLSPLKGLSLADKENTPPSLSGTRVLASKTARRIFQEPSEPNP 60
Query: 233 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLK 412
KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE LK
Sbjct: 61 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALK 120
Query: 413 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 592
EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
Sbjct: 121 SEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 180
Query: 593 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXX 772
DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDK ATYGERVVAFAAVE
Sbjct: 181 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFFSGSF 240
Query: 773 XXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 952
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE
Sbjct: 241 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 300
Query: 953 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTN 1132
QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF KVFRVENPFDFMENISLEGKTN
Sbjct: 301 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN 360
Query: 1133 FFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
FFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 361 FFEKRVGEYQRMGVMSSPTENSFTLDADF 389
>ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
taurus].
Length = 389
Score = 738 bits (1904), Expect = 0.0
Identities = 369/389 (94%), Positives = 371/389 (95%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEPAEPNP 232
MLS RVPLATIADPQQ QLSPLKGLSLADKENTPP+LSGTRVLASKTARRIFQEP+EPNP
Sbjct: 1 MLSFRVPLATIADPQQQQLSPLKGLSLADKENTPPSLSGTRVLASKTARRIFQEPSEPNP 60
Query: 233 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLK 412
KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE LK
Sbjct: 61 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALK 120
Query: 413 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 592
EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
Sbjct: 121 SEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 180
Query: 593 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXX 772
DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDK ATYGERVVAFAAVE
Sbjct: 181 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFFSGSF 240
Query: 773 XXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 952
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE
Sbjct: 241 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 300
Query: 953 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTN 1132
QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF KVFRVENPFDFMENISLEGKTN
Sbjct: 301 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN 360
Query: 1133 FFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
FFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 361 FFEKRVGEYQRMGVMSSPTENSFTLDADF 389
>ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos
taurus].
Length = 341
Score = 614 bits (1584), Expect = e-176
Identities = 321/389 (82%), Positives = 323/389 (83%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEPAEPNP 232
MLS RVPLATIADPQQ QLSPLKGLSLADKENTPP+LSGTRVLASKTARRIFQEP+EP
Sbjct: 1 MLSFRVPLATIADPQQQQLSPLKGLSLADKENTPPSLSGTRVLASKTARRIFQEPSEP-- 58
Query: 233 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLK 412
VDLSKDIQHWE LK
Sbjct: 59 ----------------------------------------------VDLSKDIQHWEALK 72
Query: 413 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 592
EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
Sbjct: 73 SEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 132
Query: 593 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXX 772
DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDK ATYGERVVAFAAVE
Sbjct: 133 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFFSGSF 192
Query: 773 XXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 952
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE
Sbjct: 193 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 252
Query: 953 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTN 1132
QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF KVFRVENPFDFMENISLEGKTN
Sbjct: 253 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN 312
Query: 1133 FFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
FFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 313 FFEKRVGEYQRMGVMSSPTENSFTLDADF 341
>ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos
taurus].
Length = 341
Score = 614 bits (1584), Expect = e-176
Identities = 321/389 (82%), Positives = 323/389 (83%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEPAEPNP 232
MLS RVPLATIADPQQ QLSPLKGLSLADKENTPP+LSGTRVLASKTARRIFQEP+EP
Sbjct: 1 MLSFRVPLATIADPQQQQLSPLKGLSLADKENTPPSLSGTRVLASKTARRIFQEPSEP-- 58
Query: 233 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLK 412
VDLSKDIQHWE LK
Sbjct: 59 ----------------------------------------------VDLSKDIQHWEALK 72
Query: 413 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 592
EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
Sbjct: 73 SEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 132
Query: 593 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXX 772
DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDK ATYGERVVAFAAVE
Sbjct: 133 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKAATYGERVVAFAAVEGIFFSGSF 192
Query: 773 XXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 952
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE
Sbjct: 193 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 252
Query: 953 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTN 1132
QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF KVFRVENPFDFMENISLEGKTN
Sbjct: 253 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN 312
Query: 1133 FFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
FFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 313 FFEKRVGEYQRMGVMSSPTENSFTLDADF 341
>ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos taurus].
Length = 351
Score = 535 bits (1379), Expect = e-152
Identities = 265/344 (77%), Positives = 296/344 (86%), Gaps = 8/344 (2%)
Frame = +2
Query: 212 EPAEPNP--KLSAPSVE------DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAE 367
E A P P +LS+ + E +EPLLR++ RRFVIFPI+Y DIW+MYKKA+ASFWTAE
Sbjct: 8 EAARPQPEERLSSDTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAE 67
Query: 368 EVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 547
EVDLSKD+ HW LK EE+YFISH+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQ
Sbjct: 68 EVDLSKDLPHWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQ 127
Query: 548 IAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERV 727
I +EN+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI D+++T+GERV
Sbjct: 128 ILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERV 187
Query: 728 VAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPS 907
VAFAAVE WLKKRGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPS
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPS 247
Query: 908 EQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVEN 1087
E+RV+EIIVNAV IEQEFLTEALPV LIGMNC LMKQYIEFVADRL+ ELGF KVF+ EN
Sbjct: 248 EERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFSKVFQAEN 307
Query: 1088 PFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
PFDFMENISLEGKTNFFEKRV EYQR VM+ T+N FTLDADF
Sbjct: 308 PFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
>ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
taurus].
Length = 351
Score = 535 bits (1379), Expect = e-152
Identities = 265/344 (77%), Positives = 296/344 (86%), Gaps = 8/344 (2%)
Frame = +2
Query: 212 EPAEPNP--KLSAPSVE------DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAE 367
E A P P +LS+ + E +EPLLR++ RRFVIFPI+Y DIW+MYKKA+ASFWTAE
Sbjct: 8 EAARPQPEERLSSDTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAE 67
Query: 368 EVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 547
EVDLSKD+ HW LK EE+YFISH+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQ
Sbjct: 68 EVDLSKDLPHWNKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQ 127
Query: 548 IAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERV 727
I +EN+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI D+++T+GERV
Sbjct: 128 ILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERV 187
Query: 728 VAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPS 907
VAFAAVE WLKKRGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPS
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPS 247
Query: 908 EQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVEN 1087
E+RV+EIIVNAV IEQEFLTEALPV LIGMNC LMKQYIEFVADRL+ ELGF KVF+ EN
Sbjct: 248 EERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFSKVFQAEN 307
Query: 1088 PFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
PFDFMENISLEGKTNFFEKRV EYQR VM+ T+N FTLDADF
Sbjct: 308 PFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,956,229
Number of extensions: 1249505
Number of successful extensions: 5330
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5310
Number of HSP's successfully gapped: 8
Length of query: 440
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 335
Effective length of database: 14,207,134
Effective search space: 4759389890
Effective search space used: 4759389890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003252
(1322 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphat... 729 0.0
Alignment gi|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphat... 697 0.0
Alignment gi|XP_539109.2| PREDICTED: similar to ribonucleotide reductase ... 534 e-152
Alignment gi|XP_858105.1| PREDICTED: similar to ribonucleotide reductase ... 521 e-148
Alignment gi|XP_858061.1| PREDICTED: similar to ribonucleotide reductase ... 504 e-143
>ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
(Ribonucleotide reductase small chain) isoform 1 [Canis
familiaris].
Length = 394
Score = 729 bits (1881), Expect = 0.0
Identities = 366/394 (92%), Positives = 371/394 (94%), Gaps = 5/394 (1%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQ-----LQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEP 217
MLSVRVPLATIADPQQ LQLSPLKGLSLADKENTPP LSGTRVLASKTARRIFQEP
Sbjct: 1 MLSVRVPLATIADPQQQQQQQLQLSPLKGLSLADKENTPPALSGTRVLASKTARRIFQEP 60
Query: 218 AEPNPKLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 397
AEP K+ APS E+EPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH
Sbjct: 61 AEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 120
Query: 398 WETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEM 577
WE+LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEM
Sbjct: 121 WESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEM 180
Query: 578 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXX 757
YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVE
Sbjct: 181 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIF 240
Query: 758 XXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVN 937
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL+HKPSEQRVKEII+N
Sbjct: 241 FSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEQRVKEIIIN 300
Query: 938 AVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISL 1117
AVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF KVFRVENPFDFMENISL
Sbjct: 301 AVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISL 360
Query: 1118 EGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
EGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 361 EGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 394
>ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
(Ribonucleotide reductase small chain) isoform 3 [Canis
familiaris].
Length = 381
Score = 697 bits (1799), Expect = 0.0
Identities = 354/394 (89%), Positives = 359/394 (91%), Gaps = 5/394 (1%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQ-----LQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEP 217
MLSVRVPLATIADPQQ LQLSPLKGLSLADKENTPP LSGTRVLASKTARRIFQEP
Sbjct: 1 MLSVRVPLATIADPQQQQQQQLQLSPLKGLSLADKENTPPALSGTRVLASKTARRIFQEP 60
Query: 218 AEPNPKLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 397
AEP K+ APS E+EPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH
Sbjct: 61 AEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 120
Query: 398 WETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEM 577
WE+LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEM
Sbjct: 121 WESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEM 180
Query: 578 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXX 757
YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVE
Sbjct: 181 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIF 240
Query: 758 XXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVN 937
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL+HKPSEQRVKEII+N
Sbjct: 241 FSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEQRVKEIIIN 300
Query: 938 AVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISL 1117
AVRIEQEFLTEALPVKLIGMNCTLMKQYIEF VFRVENPFDFMENISL
Sbjct: 301 AVRIEQEFLTEALPVKLIGMNCTLMKQYIEF-------------VFRVENPFDFMENISL 347
Query: 1118 EGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
EGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 348 EGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 381
>ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible)
isoform 2 [Canis familiaris].
Length = 351
Score = 534 bits (1375), Expect = e-152
Identities = 261/339 (76%), Positives = 296/339 (87%), Gaps = 6/339 (1%)
Frame = +2
Query: 221 EPNPKLSAPSVE------DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLS 382
EP+ +LS+ + E +EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTAEEVDLS
Sbjct: 13 EPDERLSSDTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72
Query: 383 KDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 562
KD+ HW LK +E+YFISH+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQI +EN
Sbjct: 73 KDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 132
Query: 563 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAA 742
+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI D+++T+GERVVAFAA
Sbjct: 133 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKSTFGERVVAFAA 192
Query: 743 VEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVK 922
VE WLKKRGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPSE+RV+
Sbjct: 193 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVR 252
Query: 923 EIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFM 1102
EIIVNAV IEQEFLTEALPV LIGMNC LMKQYIEFVADRL++ELGF KVF+ ENPFDFM
Sbjct: 253 EIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFSKVFQAENPFDFM 312
Query: 1103 ENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
ENISLEGKTNFFEKRV EYQR VM+ T+N FTLDADF
Sbjct: 313 ENISLEGKTNFFEKRVAEYQRFAVMAETTDNVFTLDADF 351
>ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible)
isoform 4 [Canis familiaris].
Length = 374
Score = 521 bits (1341), Expect = e-148
Identities = 261/362 (72%), Positives = 296/362 (81%), Gaps = 29/362 (8%)
Frame = +2
Query: 221 EPNPKLSAPSVE------DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLS 382
EP+ +LS+ + E +EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTAEEVDLS
Sbjct: 13 EPDERLSSDTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72
Query: 383 KDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 562
KD+ HW LK +E+YFISH+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQI +EN
Sbjct: 73 KDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 132
Query: 563 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAA 742
+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI D+++T+GERVVAFAA
Sbjct: 133 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKSTFGERVVAFAA 192
Query: 743 VEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVK 922
VE WLKKRGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPSE+RV+
Sbjct: 193 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVR 252
Query: 923 EIIVNAVRIEQ-----------------------EFLTEALPVKLIGMNCTLMKQYIEFV 1033
EIIVNAV IEQ EFLTEALPV LIGMNC LMKQYIEFV
Sbjct: 253 EIIVNAVEIEQVSREAYMISTSLFLEIATCRSKHEFLTEALPVGLIGMNCVLMKQYIEFV 312
Query: 1034 ADRLMLELGFGKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDA 1213
ADRL++ELGF KVF+ ENPFDFMENISLEGKTNFFEKRV EYQR VM+ T+N FTLDA
Sbjct: 313 ADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVAEYQRFAVMAETTDNVFTLDA 372
Query: 1214 DF 1219
DF
Sbjct: 373 DF 374
>ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible)
isoform 3 [Canis familiaris].
Length = 338
Score = 504 bits (1299), Expect = e-143
Identities = 251/339 (74%), Positives = 284/339 (83%), Gaps = 6/339 (1%)
Frame = +2
Query: 221 EPNPKLSAPSVE------DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLS 382
EP+ +LS+ + E +EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTAEEVDLS
Sbjct: 13 EPDERLSSDTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72
Query: 383 KDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 562
KD+ HW LK +E+YFISH+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQI +EN
Sbjct: 73 KDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIEN 132
Query: 563 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAA 742
+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI D+++T+GERVVAFAA
Sbjct: 133 VHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKSTFGERVVAFAA 192
Query: 743 VEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVK 922
VE WLKKRGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPSE+RV+
Sbjct: 193 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVR 252
Query: 923 EIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFM 1102
EIIVNAV IEQEFLTEALPV LIGMNC LMKQYIEF VF+ ENPFDFM
Sbjct: 253 EIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEF-------------VFQAENPFDFM 299
Query: 1103 ENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
ENISLEGKTNFFEKRV EYQR VM+ T+N FTLDADF
Sbjct: 300 ENISLEGKTNFFEKRVAEYQRFAVMAETTDNVFTLDADF 338
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,262,076
Number of extensions: 1300750
Number of successful extensions: 5375
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5351
Number of HSP's successfully gapped: 5
Length of query: 440
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 334
Effective length of database: 15,340,888
Effective search space: 5123856592
Effective search space used: 5123856592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003252
(1322 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159403.1| ribonucleoside-diphosphate reductase subunit... 724 0.0
Alignment gi|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2... 724 0.0
Alignment gi|NP_001165948.1| ribonucleoside-diphosphate reductase subunit... 530 e-150
Alignment gi|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2... 530 e-150
Alignment gi|NP_001165949.1| ribonucleoside-diphosphate reductase subunit... 471 e-133
>ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo
sapiens].
Length = 449
Score = 724 bits (1870), Expect = 0.0
Identities = 359/389 (92%), Positives = 366/389 (94%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEPAEPNP 232
MLS+RVPLA I DPQQLQLSPLKGLSL DKENTPP LSGTRVLASKTARRIFQEP EP
Sbjct: 61 MLSLRVPLAPITDPQQLQLSPLKGLSLVDKENTPPALSGTRVLASKTARRIFQEPTEPKT 120
Query: 233 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLK 412
K +AP VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE+LK
Sbjct: 121 KAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLK 180
Query: 413 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 592
PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
Sbjct: 181 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 240
Query: 593 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXX 772
DTYIKD KEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVE
Sbjct: 241 DTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSF 300
Query: 773 XXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 952
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL+HKPSE+RV+EII+NAVRIE
Sbjct: 301 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIE 360
Query: 953 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTN 1132
QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF KVFRVENPFDFMENISLEGKTN
Sbjct: 361 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN 420
Query: 1133 FFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
FFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 421 FFEKRVGEYQRMGVMSSPTENSFTLDADF 449
>ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo
sapiens].
Length = 389
Score = 724 bits (1870), Expect = 0.0
Identities = 359/389 (92%), Positives = 366/389 (94%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEPAEPNP 232
MLS+RVPLA I DPQQLQLSPLKGLSL DKENTPP LSGTRVLASKTARRIFQEP EP
Sbjct: 1 MLSLRVPLAPITDPQQLQLSPLKGLSLVDKENTPPALSGTRVLASKTARRIFQEPTEPKT 60
Query: 233 KLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLK 412
K +AP VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE+LK
Sbjct: 61 KAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLK 120
Query: 413 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 592
PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI
Sbjct: 121 PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLI 180
Query: 593 DTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXX 772
DTYIKD KEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVE
Sbjct: 181 DTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSF 240
Query: 773 XXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIE 952
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL+HKPSE+RV+EII+NAVRIE
Sbjct: 241 ASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIE 300
Query: 953 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTN 1132
QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF KVFRVENPFDFMENISLEGKTN
Sbjct: 301 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTN 360
Query: 1133 FFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
FFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 361 FFEKRVGEYQRMGVMSSPTENSFTLDADF 389
>ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo
sapiens].
Length = 423
Score = 530 bits (1365), Expect = e-150
Identities = 255/321 (79%), Positives = 288/321 (89%)
Frame = +2
Query: 257 DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLKPEERYFIS 436
+EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTAEEVDLSKD+ HW LK +E+YFIS
Sbjct: 103 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 162
Query: 437 HVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSK 616
H+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQI +EN+HSEMYSLLIDTYI+D K
Sbjct: 163 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 222
Query: 617 EREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXXXXXXWLKK 796
+REFLFNAIETMP VKKKADWALRWI D+++T+GERVVAFAAVE WLKK
Sbjct: 223 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 282
Query: 797 RGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIEQEFLTEAL 976
RGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPSE+RV+EIIV+AV+IEQEFLTEAL
Sbjct: 283 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 342
Query: 977 PVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTNFFEKRVGE 1156
PV LIGMNC LMKQYIEFVADRL++ELGF KVF+ ENPFDFMENISLEGKTNFFEKRV E
Sbjct: 343 PVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSE 402
Query: 1157 YQRMGVMSSPTENSFTLDADF 1219
YQR VM+ T+N FTLDADF
Sbjct: 403 YQRFAVMAETTDNVFTLDADF 423
>ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo
sapiens].
Length = 351
Score = 530 bits (1365), Expect = e-150
Identities = 255/321 (79%), Positives = 288/321 (89%)
Frame = +2
Query: 257 DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLKPEERYFIS 436
+EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTAEEVDLSKD+ HW LK +E+YFIS
Sbjct: 31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 90
Query: 437 HVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSK 616
H+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQI +EN+HSEMYSLLIDTYI+D K
Sbjct: 91 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 150
Query: 617 EREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXXXXXXWLKK 796
+REFLFNAIETMP VKKKADWALRWI D+++T+GERVVAFAAVE WLKK
Sbjct: 151 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 210
Query: 797 RGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIEQEFLTEAL 976
RGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPSE+RV+EIIV+AV+IEQEFLTEAL
Sbjct: 211 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 270
Query: 977 PVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTNFFEKRVGE 1156
PV LIGMNC LMKQYIEFVADRL++ELGF KVF+ ENPFDFMENISLEGKTNFFEKRV E
Sbjct: 271 PVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSE 330
Query: 1157 YQRMGVMSSPTENSFTLDADF 1219
YQR VM+ T+N FTLDADF
Sbjct: 331 YQRFAVMAETTDNVFTLDADF 351
>ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo
sapiens].
Length = 299
Score = 471 bits (1211), Expect = e-133
Identities = 229/295 (77%), Positives = 259/295 (87%)
Frame = +2
Query: 335 KKAEASFWTAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQ 514
++ EA+ +EVDLSKD+ HW LK +E+YFISH+LAFFAASDGIVNENLVERFSQEVQ
Sbjct: 5 ERPEAAGLDQDEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQ 64
Query: 515 ITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI 694
+ EARCFYGFQI +EN+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI
Sbjct: 65 VPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI 124
Query: 695 GDKEATYGERVVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFAC 874
D+++T+GERVVAFAAVE WLKKRGLMPGLTFSNELISRDEGLHCDFAC
Sbjct: 125 ADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 184
Query: 875 LMFKHLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLE 1054
LMF++L++KPSE+RV+EIIV+AV+IEQEFLTEALPV LIGMNC LMKQYIEFVADRL++E
Sbjct: 185 LMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVE 244
Query: 1055 LGFGKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
LGF KVF+ ENPFDFMENISLEGKTNFFEKRV EYQR VM+ T+N FTLDADF
Sbjct: 245 LGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 299
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,108,167
Number of extensions: 1265143
Number of successful extensions: 5095
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5056
Number of HSP's successfully gapped: 5
Length of query: 440
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 334
Effective length of database: 14,802,980
Effective search space: 4944195320
Effective search space used: 4944195320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003252
(1322 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2... 697 0.0
Alignment gi|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2... 525 e-149
>ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus].
Length = 390
Score = 697 bits (1798), Expect = 0.0
Identities = 348/390 (89%), Positives = 360/390 (92%), Gaps = 1/390 (0%)
Frame = +2
Query: 53 MLSVRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGTRVLASKTARRIFQEPAEPNP 232
MLSVR PLATIAD QQLQLSPLK L+LADKENTPPTLS TRVLASK ARRIFQ+ AE
Sbjct: 1 MLSVRTPLATIADQQQLQLSPLKRLTLADKENTPPTLSSTRVLASKAARRIFQDSAELES 60
Query: 233 KLSA-PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETL 409
K PSVEDEPLLRENPRRFV+FPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE L
Sbjct: 61 KAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEAL 120
Query: 410 KPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLL 589
KP+ER+FISHVLAFFAASDGIVNENLVERFSQEVQ+TEARCFYGFQIAMENIHSEMYSLL
Sbjct: 121 KPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 180
Query: 590 IDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXX 769
IDTYIKD KERE+LFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVE
Sbjct: 181 IDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGS 240
Query: 770 XXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRI 949
WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL+HKP+EQRV+EII NAVRI
Sbjct: 241 FASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRI 300
Query: 950 EQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKT 1129
EQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGF K+FRVENPFDFMENISLEGKT
Sbjct: 301 EQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKT 360
Query: 1130 NFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
NFFEKRVGEYQRMGVMS+ TENSFTLDADF
Sbjct: 361 NFFEKRVGEYQRMGVMSNSTENSFTLDADF 390
>ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus].
Length = 351
Score = 525 bits (1353), Expect = e-149
Identities = 253/321 (78%), Positives = 285/321 (88%)
Frame = +2
Query: 257 DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWETLKPEERYFIS 436
+EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTAEEVDLSKD+ HW LK +E+YFIS
Sbjct: 31 EEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFIS 90
Query: 437 HVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSK 616
H+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQI +EN+HSEMYSLLIDTYI+D K
Sbjct: 91 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 150
Query: 617 EREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEXXXXXXXXXXXXWLKK 796
+REFLFNAIETMP VKKKADWALRWI D+++T+GERVVAFAAVE WLKK
Sbjct: 151 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKK 210
Query: 797 RGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKPSEQRVKEIIVNAVRIEQEFLTEAL 976
RGLMPGLTFSNELISRDEGLHCDFACLMF++L++KPSE RV+EII +AV+IEQEFLTEAL
Sbjct: 211 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEDRVREIIADAVQIEQEFLTEAL 270
Query: 977 PVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVENPFDFMENISLEGKTNFFEKRVGE 1156
PV LIGMNC LMKQYIEFVADRL+ ELGF K+F+ ENPFDFMENISLEGKTNFFEKRV E
Sbjct: 271 PVGLIGMNCVLMKQYIEFVADRLLGELGFSKIFQAENPFDFMENISLEGKTNFFEKRVSE 330
Query: 1157 YQRMGVMSSPTENSFTLDADF 1219
YQR VM+ T+N FTLDADF
Sbjct: 331 YQRFAVMAETTDNVFTLDADF 351
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,672,154
Number of extensions: 1054978
Number of successful extensions: 4225
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4213
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 336
Effective length of database: 12,493,815
Effective search space: 4197921840
Effective search space used: 4197921840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003252
(1322 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360612.1| PREDICTED: ribonucleoside-diphosphate reduct... 647 0.0
Alignment gi|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reduct... 532 e-151
Alignment gi|XP_003355054.1| PREDICTED: ribonucleoside-diphosphate reduct... 473 e-133
>ref|XP_003360612.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Sus
scrofa].
Length = 401
Score = 647 bits (1668), Expect = 0.0
Identities = 339/409 (82%), Positives = 343/409 (83%), Gaps = 4/409 (0%)
Frame = +2
Query: 5 HPRTCAFASPAPPRVAMLS----VRVPLATIADPQQLQLSPLKGLSLADKENTPPTLSGT 172
HPR A +P RV +L V P QQL+LS SL K P
Sbjct: 19 HPRRDAAITP---RVVLLEKTERVFTPKPVQEHSQQLELS-----SLLAKTRNPDDF--- 67
Query: 173 RVLASKTARRIFQEPAEPNPKLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEAS 352
A P+PKLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEAS
Sbjct: 68 ---------------AFPSPKLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEAS 112
Query: 353 FWTAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARC 532
FWTAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARC
Sbjct: 113 FWTAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARC 172
Query: 533 FYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEAT 712
FYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEAT
Sbjct: 173 FYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEAT 232
Query: 713 YGERVVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 892
YGERVVAFAAVE WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL
Sbjct: 233 YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 292
Query: 893 LHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKV 1072
LHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKV
Sbjct: 293 LHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKV 352
Query: 1073 FRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
FRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
Sbjct: 353 FRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 401
>ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B isoform
1 [Sus scrofa].
Length = 351
Score = 532 bits (1371), Expect = e-151
Identities = 262/345 (75%), Positives = 294/345 (85%)
Frame = +2
Query: 185 SKTARRIFQEPAEPNPKLSAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTA 364
S+ R+ + +E K S +EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTA
Sbjct: 12 SEQEERLSSDTSENEAKSS-----EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTA 66
Query: 365 EEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 544
EEVDLSKD+ HW LK +E+YFISH+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGF
Sbjct: 67 EEVDLSKDLPHWNRLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGF 126
Query: 545 QIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGER 724
QI +EN+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI D++AT+GER
Sbjct: 127 QILIENVHSEMYSLLIDTYIRDPKQREFLFNAIETMPYVKKKADWALRWIADRKATFGER 186
Query: 725 VVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLLHKP 904
VVAFAAVE WLKKRGLMPGLTFSNELISRDEGLHCDFACLMF++L++KP
Sbjct: 187 VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKP 246
Query: 905 SEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFRVE 1084
SE RV+EIIVNAV IEQEFLTEALPV LIGMNC LMKQYIEFVADRL+ ELGF KVF+ E
Sbjct: 247 SEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFSKVFQAE 306
Query: 1085 NPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
NPFDFMENISLEGKTNFFEKRV EYQR VM+ T+N FTLDADF
Sbjct: 307 NPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
>ref|XP_003355054.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B isoform
2 [Sus scrofa].
Length = 299
Score = 473 bits (1216), Expect = e-133
Identities = 232/295 (78%), Positives = 256/295 (86%)
Frame = +2
Query: 335 KKAEASFWTAEEVDLSKDIQHWETLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQ 514
++ EA+ EEVDLSKD+ HW LK +E+YFISH+LAFFAASDGIVNENLVERFSQEVQ
Sbjct: 5 ERPEAAGSEQEEVDLSKDLPHWNRLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQ 64
Query: 515 ITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI 694
+ EARCFYGFQI +EN+HSEMYSLLIDTYI+D K+REFLFNAIETMP VKKKADWALRWI
Sbjct: 65 VPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKQREFLFNAIETMPYVKKKADWALRWI 124
Query: 695 GDKEATYGERVVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFAC 874
D++AT+GERVVAFAAVE WLKKRGLMPGLTFSNELISRDEGLHCDFAC
Sbjct: 125 ADRKATFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 184
Query: 875 LMFKHLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLE 1054
LMF++L++KPSE RV+EIIVNAV IEQEFLTEALPV LIGMNC LMKQYIEFVADRL+ E
Sbjct: 185 LMFQYLVNKPSEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTE 244
Query: 1055 LGFGKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 1219
LGF KVF+ ENPFDFMENISLEGKTNFFEKRV EYQR VM+ T+N FTLDADF
Sbjct: 245 LGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 299
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,281,973
Number of extensions: 806708
Number of successful extensions: 3456
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3414
Number of HSP's successfully gapped: 3
Length of query: 440
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,804,438
Effective search space: 2975900044
Effective search space used: 2975900044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003252
(1322 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1279 0.0
gb|GL892316.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 363 2e-97
Sscrofa_Chr04 66 5e-08
>Sscrofa_Chr15
|| Length = 157681621
Score = 1279 bits (645), Expect = 0.0
Identities = 995/1112 (89%), Gaps = 16/1112 (1%)
Strand = Plus / Plus
Query: 121 agggctcagcctggcggacaaggagaacactcccccgaccctcagcgggacccgcgtgct 180
|||| ||||||| | |||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct: 22501556 aggggtcagcctcggggacaaggagaacattcccccgaccctc-gcgggacctgcgtgct 22501614
Query: 181 ggccagcaagaccgccaggaggatcttccaggagcccgccgagccgaaccctaagctctc 240
||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||| ||
Sbjct: 22501615 ggccagcaagaccaccaggaggatcttctaggagccggccaagccgaaccctaagctatc 22501674
Query: 241 ggcccccagcgtggaggacgagccgctcctgagagaaaacccccggcgctttgtcatctt 300
| ||||||||| ||| | |||| | |||||||||||||| || |||||||||||||
Sbjct: 22501675 cactcccagcgtgaagggcaagccaccactgagagaaaaccctcgctgctttgtcatctt 22501734
Query: 301 tcctatagaataccatgacatctggcagatgtataagaaggcagaggcttccttctggac 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 22501735 tcctatcaaataccatgacatctggcagatgtataagaaggcagaggcttccttttggac 22501794
Query: 361 agctgaggaggtggacctctccaaggacattcagcactgggagaccctgaagccggagga 420
|||||||||||||| ||||||||||| |||||| |||||||| ||| ||||||| ||||
Sbjct: 22501795 agctgaggaggtgggcctctccaagggcattcaacactgggaaaccatgaagcctaagga 22501854
Query: 421 gagatattttatttcacatg-tcctggctttcttcgcagcaagtgatggcatcgtgaatg 479
||||||||||||||||||| || |||||||||| ||||||||||||||||||||| |||
Sbjct: 22501855 gagatattttatttcacatcatcttggctttctttgcagcaagtgatggcatcgtggatg 22501914
Query: 480 aaaacttggtggagcggtttagccaagaagttcagattaccgaagctcgttgtttctatg 539
|||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 22501915 aaaacttggtggagtggtttagccaagaaattcagattacagaagctcgttgtttctatg 22501974
Query: 540 gcttccaaattgccatggaaaacatacattctgaaatgtatagcctcctcatcgacactt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 22501975 gcttccaaattgccatggaaaacatacattctgaaatgtatagcctcctcattgatactt 22502034
Query: 600 acatcaaagattccaaagaaagggaattcctcttcaatgccatcgagacaatgccttgcg 659
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 22502035 acatcaaagattccaaagaaagcgaatttctcttcaatgccatcgagacaatgccttgtg 22502094
Query: 660 taaagaagaaggcagactgggccttgcgctggatcggggacaaggaggcgacgtacggag 719
|||||||| |||||||||||||||||| |||||| |||||||| ||||| | ||||
Sbjct: 22502095 taaagaaggaggcagactgggccttgcactggatgggggacaaagaggctccacgtggag 22502154
Query: 720 aacgggtcgtagcctttgccgccgtggaaggcatcttcttttctgggtcttttgcatcca 779
|||| ||| | ||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 22502155 aacgtgtcatcacctttgctgccgtggaaggaattttcttttctggttcttttgcatcca 22502214
Query: 780 tattctggctcaagaaacgaggactgatgcctggcctgaccttttccaacgaacttatta 839
||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 22502215 cattctggctcaagaaacgaggactgatgcctggcctg--------------acgtatta 22502260
Query: 840 gcagagatgagggtttacactgcgacttcgcctgcctgatgttcaaacacctgctacaca 899
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 22502261 gcagagatgagggtttacactgcgactttgcctgcctgatgttcaaactcctgctacaca 22502320
Query: 900 agccttcggagcagagagtgaaagaaatcattgtcaacgccgtgcggatagaacaggagt 959
| |||||||||||||||||||||||||| || |||| || || |||||||||||||||
Sbjct: 22502321 aaccttcggagcagagagtgaaagaaataatcatcaatgcagttaggatagaacaggagt 22502380
Query: 960 tcctcacggaggccctgcccgtgaagctcatcgggatgaactgcactttaatgaaacagt 1019
|| ||| |||| ||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct: 22502381 tcttcatagaggagctgccggtgaagctcactgggatgaattgcactttaatgaaacagt 22502440
Query: 1020 acatcgagttcgtggcagacaggctcatgctggagctgggctttggcaaggtcttcagag 1079
|||| ||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||
Sbjct: 22502441 acattgagttcgtggcagacagactcaggctggagctgggcttcagcaaggttttcagag 22502500
Query: 1080 tagagaatccctttgactttatggagaatatttccctggaggggaagacaaacttctttg 1139
|||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||
Sbjct: 22502501 tagaaaatccctttgactttatggagaatatttcactggaagggaagacgaacttctctg 22502560
Query: 1140 agaagagagtaggcgagtatcagaggatgggcgtgatgtcgagtccgacggagaattctt 1199
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 22502561 agaagagagtaggcgagtatcagaggatgggagtgatgtcgagtcggacagagaattctt 22502620
Query: 1200 ttaccctggatgccgacttctgagggcgctga 1231
||||| ||||||| ||||||| |||| |||||
Sbjct: 22502621 ttaccttggatgctgacttctaagggagctga 22502652
>gb|GL892316.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1193
Length = 42454
Score = 363 bits (183), Expect = 2e-97
Identities = 206/216 (95%)
Strand = Plus / Minus
Query: 1068 aggtcttcagagtagagaatccctttgactttatggagaatatttccctggaggggaaga 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26986 aggtcttcagagtagagaatccctttgactttatggagaatatttccctggaggggaaga 26927
Query: 1128 caaacttctttgagaagagagtaggcgagtatcagaggatgggcgtgatgtcgagtccga 1187
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 26926 caaacttctttgagaagagagtaggcgagtatcagaggatgggcgtgatgtcaagtccga 26867
Query: 1188 cggagaattcttttaccctggatgccgacttctgagggcgctgacgaggcgctctccgtc 1247
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26866 ccgagaattcttttaccctggatgccgacttctaagggcgctgacgaggcgctctccgtc 26807
Query: 1248 tgctgattttttnnnnnnntttctcatcaaaagagg 1283
|||||||||||| |||||||||||||||||
Sbjct: 26806 tgctgattttttccccccctttctcatcaaaagagg 26771
Score = 278 bits (140), Expect = 7e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 233 aagctctcggcccccagcgtggaggacgagccgctcctgagagaaaacccccggcgcttt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31806 aagctctcggcccccagcgtggaggacgagccgctcctgagagaaaacccccggcgcttt 31747
Query: 293 gtcatctttcctatagaataccatgacatctggcagatgtataagaaggcagaggcttcc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31746 gtcatctttcctatagaataccatgacatctggcagatgtataagaaggcagaggcttcc 31687
Query: 353 ttctggacagctgaggaggt 372
||||||||||||||||||||
Sbjct: 31686 ttctggacagctgaggaggt 31667
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 716 ggagaacgggtcgtagcctttgccgccgtggaaggcatcttcttttctgggtcttttgca 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28331 ggagaacgggtcgtagcctttgccgccgtggaaggcatcttcttttctgggtcttttgca 28272
Query: 776 tccatattctggctcaagaaacgaggactgatgcctggcctgaccttttccaacgaactt 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28271 tccatattctggctcaagaaacgaggactgatgcctggcctgaccttttccaacgaactt 28212
Query: 836 attagcagagatgagg 851
||||||||||||||||
Sbjct: 28211 attagcagagatgagg 28196
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 487 ggtggagcggtttagccaagaagttcagattaccgaagctcgttgtttctatggcttcca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30784 ggtggagcggtttagccaagaagttcagattaccgaagctcgttgtttctatggcttcca 30725
Query: 547 aattgccatggaaaacatacattctgaaatgtatagcctcctcatcgacacttacatcaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30724 aattgccatggaaaacatacattctgaaatgtatagcctcctcatcgacacttacatcaa 30665
Query: 607 agattccaaagaaagg 622
||||||||||||||||
Sbjct: 30664 agattccaaagaaagg 30649
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 369 aggtggacctctccaaggacattcagcactgggagaccctgaagccggaggagagatatt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31408 aggtggacctctccaaggacattcagcactgggagaccctgaagccggaggagagatatt 31349
Query: 429 ttatttcacatgtcctggctttcttcgcagcaagtgatggcatcgtgaatgaaaacttgg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31348 ttatttcacatgtcctggctttcttcgcagcaagtgatggcatcgtgaatgaaaacttgg 31289
Query: 489 tg 490
||
Sbjct: 31288 tg 31287
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 953 caggagttcctcacggaggccctgcccgtgaagctcatcgggatgaactgcactttaatg 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27192 caggagttcctcacggaggccctgcccgtgaagctcatcgggatgaactgcactttaatg 27133
Query: 1013 aaacagtacatcgagttcgtggcagacaggctcatgctggagctgggctttggcaaggt 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27132 aaacagtacatcgagttcgtggcagacaggctcatgctggagctgggctttggcaaggt 27074
Score = 198 bits (100), Expect = 5e-48
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 849 agggtttacactgcgacttcgcctgcctgatgttcaaacacctgctacacaagccttcgg 908
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 27460 agggtttacactgcgacttcgcctgcctgatgttcaaacacctgttacacaagccttcgg 27401
Query: 909 agcagagagtgaaagaaatcattgtcaacgccgtgcggatagaacagg 956
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 27400 agcagagagtgaaagaaatcatcgtcaacgccgtgcggatagaacagg 27353
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 620 agggaattcctcttcaatgccatcgagacaatgccttgcgtaaagaagaaggcagactgg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28538 agggaattcctcttcaatgccatcgagacaatgccttgcgtaaagaagaaggcagactgg 28479
Query: 680 gccttgcgctggatcggggacaaggaggcgacgtacgg 717
||||||||||||||||||||||||||||||||||||||
Sbjct: 28478 gccttgcgctggatcggggacaaggaggcgacgtacgg 28441
>Sscrofa_Chr04
|| Length = 143465943
Score = 65.9 bits (33), Expect = 5e-08
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 731 gcctttgccgccgtggaaggcatcttcttttctgggtcttttgcatccatattctggctc 790
|||||||| || || ||||| || ||||| || || |||||||| | ||||||||| |
Sbjct: 37691440 gcctttgctgctgtagaaggaattttcttctcgggatcttttgctgctatattctggtta 37691381
Query: 791 aagaaacgaggactgatgcctggcctgaccttttccaacgaacttattagcagagatgag 850
|||||| |||| || |||||||| || || |||||||| ||||| || ||||||||||||
Sbjct: 37691380 aagaaaagaggtcttatgcctggactcacgttttccaatgaactcatcagcagagatgag 37691321
Query: 851 g 851
|
Sbjct: 37691320 g 37691320
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,880,474
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 12
Length of query: 1322
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1301
Effective length of database: 2,808,413,156
Effective search space: 3653745515956
Effective search space used: 3653745515956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)