Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003254
(1160 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159994.1| thrombomodulin [Bos taurus]. 86 5e-17
Alignment gi|NP_001071358.1| C-type lectin domain family 14 member A [Bos... 82 1e-15
Alignment gi|XP_002693033.1| PREDICTED: chondrolectin-like [Bos taurus]. 54 3e-07
Alignment gi|XP_605478.4| PREDICTED: chondrolectin-like [Bos taurus]. 54 3e-07
>ref|NP_001159994.1| thrombomodulin [Bos taurus].
Length = 578
Score = 86.3 bits (212), Expect = 5e-17
Identities = 66/206 (32%), Positives = 92/206 (44%), Gaps = 12/206 (5%)
Frame = +3
Query: 360 CVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERM 539
CV C++ G + A C++ G+L T++S +
Sbjct: 30 CVDLDCFAVFRGPATFLAASRVCERLQGHLMTVRSSVAEDVISLLLSGDGP--------- 80
Query: 540 GRFWIGLQRDKGKCLDSDL--PLKGFRWVDGVEDTPYTNW---HKEAKNSCISKRCVSLL 704
R WIGLQR G C D + PL+GF+WV G T ++ W H + C CV++
Sbjct: 81 -RLWIGLQRPPG-CDDPEHSGPLRGFQWVTGDNRTSFSRWARPHDDGARLC-GPLCVAV- 136
Query: 705 LDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPG-------Q 863
+ ALA W E PC + +GF+C+F F CRPLA+ PG
Sbjct: 137 -SAAAGALAPGEPAWEERPCDAE------ADGFLCEFHFAASCRPLAVD-PGATAAAGLS 188
Query: 864 VTYTTPFQATSSTLQAVPFGSMAHVA 941
+TY TPF A + QA+P GS A VA
Sbjct: 189 ITYGTPFGARGADFQALPLGSTAAVA 214
>ref|NP_001071358.1| C-type lectin domain family 14 member A [Bos taurus].
Length = 490
Score = 81.6 bits (200), Expect = 1e-15
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 3/208 (1%)
Frame = +3
Query: 330 EGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXX 509
E T+ A ACYS H EAQ C+ + G L+T++ E R V
Sbjct: 22 EHPTADRASCSASGACYSLHHATFKRQEAQEACNLRHGVLSTVRGGAELRAVLALLRAGP 81
Query: 510 XXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVD---GVEDTPYTNWHKEAKNSCI 680
+ + FW+ L+R + C + PL+GF W+ G ++ +W +E SC
Sbjct: 82 GPGGGSKDLL--FWVALERRRSDCTLENEPLRGFSWLSPDVGGSESDTLHWVEEPLLSCT 139
Query: 681 SKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPG 860
+RC L W E C +G++CK+ F+ +C G
Sbjct: 140 VRRCAGLQATGGVEPAG-----WKEMRCHQR------ADGYLCKYQFQSLCPAPRPGAAS 188
Query: 861 QVTYTTPFQATSSTLQAVPFGSMAHVAC 944
++Y PFQ S+ L P G+ C
Sbjct: 189 NLSYRAPFQLYSAALDFSPPGTEVSALC 216
>ref|XP_002693033.1| PREDICTED: chondrolectin-like [Bos taurus].
Length = 373
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Frame = +3
Query: 396 KLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKG 575
+L+ +EA+ C + GG L +++SE+E R ++ G FWIGL+R +
Sbjct: 53 RLNFEEARAACRRNGGQLVSIESEDEQRLIE-------KFIENLLASDGDFWIGLRRRED 105
Query: 576 KCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPA--LASRLSKW 749
+ + + W+DG + NW+ + + SC S+ CV + S PA + +W
Sbjct: 106 QKSNGTACQDLYAWIDG-STAAFRNWYVD-EPSCGSEVCVVMYHQPSAPAGIGGPYMFQW 163
Query: 750 AEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQVTYTTP 881
+ C + F+CK+S + P G ++ TP
Sbjct: 164 NDDRCTMKNN-------FICKYSDEKPTVPSTRTGGEEIEPATP 200
>ref|XP_605478.4| PREDICTED: chondrolectin-like [Bos taurus].
Length = 373
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Frame = +3
Query: 396 KLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKG 575
+L+ +EA+ C + GG L +++SE+E R ++ G FWIGL+R +
Sbjct: 53 RLNFEEARAACRRNGGQLVSIESEDEQRLIE-------KFIENLLASDGDFWIGLRRRED 105
Query: 576 KCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPA--LASRLSKW 749
+ + + W+DG + NW+ + + SC S+ CV + S PA + +W
Sbjct: 106 QKSNGTACQDLYAWIDG-STAAFRNWYVD-EPSCGSEVCVVMYHQPSAPAGIGGPYMFQW 163
Query: 750 AEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQVTYTTP 881
+ C + F+CK+S + P G ++ TP
Sbjct: 164 NDDRCTMKNN-------FICKYSDEKPTVPSTRTGGEEIEPATP 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,949,724
Number of extensions: 1329770
Number of successful extensions: 6639
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6581
Number of HSP's successfully gapped: 4
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003254
(1160 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848496.1| PREDICTED: similar to Complement component C1q ... 296 e-104
Alignment gi|XP_540833.1| PREDICTED: similar to tumor endothelial marker ... 107 8e-33
Alignment gi|XP_547782.2| PREDICTED: similar to C-type lectin domain fami... 85 1e-16
Alignment gi|NP_001006954.1| thrombomodulin precursor [Canis lupus famili... 79 3e-16
Alignment gi|XP_546529.2| PREDICTED: similar to layilin [Canis familiaris]. 52 8e-07
>ref|XP_848496.1| PREDICTED: similar to Complement component C1q receptor precursor
(Complement component 1, q subcomponent, receptor 1)
(C1qRp) (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen)
(CDw93) [Canis familiaris].
Length = 651
Score = 296 bits (757), Expect(2) = e-104
Identities = 139/216 (64%), Positives = 163/216 (75%)
Frame = +3
Query: 351 AVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXX 530
AVVC G+ACY+AH GKLSA EAQLHC + GGNLAT+++E EA HVQ
Sbjct: 29 AVVCAGSACYTAHAGKLSAAEAQLHCSRNGGNLATVRTEAEAWHVQRALAQLLQSEAGLE 88
Query: 531 ERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLD 710
R +FWIGLQR+KGKCLD LPLKGF WV G EDT +TNWHKE +NSC S+RCVSL L
Sbjct: 89 ARNRKFWIGLQREKGKCLDPRLPLKGFSWVGGGEDTLFTNWHKEVRNSCTSRRCVSLQLP 148
Query: 711 LSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQVTYTTPFQA 890
LS A L KW+EGPCGS P +++EGFVCKFSFKGMC+PLALGGPG++ YTTPFQA
Sbjct: 149 LSPQPQAGSLPKWSEGPCGSPSIPVSNIEGFVCKFSFKGMCQPLALGGPGRINYTTPFQA 208
Query: 891 TSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEKAP 998
TSS+L+ VPF S+A VACGD D Q+ +FLC+EKAP
Sbjct: 209 TSSSLEVVPFASVATVACGDGDHGQEQHFLCREKAP 244
Score = 102 bits (253), Expect(2) = e-104
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = +1
Query: 985 RRRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRFLNDL 1155
R + P VF+W SSGPLC+ P L C FNNGGC+QDCFEGG+GSFRCGCRPG+R +DL
Sbjct: 240 REKAPGVFDWGSSGPLCVRPGLVCSFNNGGCQQDCFEGGEGSFRCGCRPGFRLRDDL 296
>ref|XP_540833.1| PREDICTED: similar to tumor endothelial marker 1 precursor [Canis
familiaris].
Length = 772
Score = 107 bits (266), Expect(2) = 8e-33
Identities = 70/205 (34%), Positives = 101/205 (49%), Gaps = 4/205 (1%)
Frame = +3
Query: 342 SQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXX 521
++ VC +CY+ + + EA C + GG+LAT ++ EEA+ V
Sbjct: 23 AEPRAVCGPGSCYALFPRRRTFLEAWRACRELGGDLATPRTPEEAQRVDSLVGPGPASRL 82
Query: 522 XXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNS-CISKRCVS 698
WIGLQR +C PL+GF W G +DT +TNW + A + C ++RC +
Sbjct: 83 --------LWIGLQRQARQC-QPQRPLRGFTWTTGDQDTAFTNWAQPATGAPCPAQRCAA 133
Query: 699 LLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQV---T 869
L AS +W EG C + V+G++C+F F+G C P LG GQ
Sbjct: 134 LE--------ASGEHRWLEGSCTLA------VDGYLCQFGFEGSC-PALLGEAGQAGPAV 178
Query: 870 YTTPFQATSSTLQAVPFGSMAHVAC 944
YTTPF S+ + +PFGS+A V C
Sbjct: 179 YTTPFHLVSTEFEWLPFGSVAAVPC 203
Score = 52.8 bits (125), Expect(2) = 8e-33
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +1
Query: 988 RRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRFLND 1152
++P W+ +GPLC P GC +NGGCE +C E DG C C G+R D
Sbjct: 215 KQPEGGVGWSRAGPLC--PGTGCGPDNGGCEHECVEEVDGRVSCRCTEGFRLAAD 267
>ref|XP_547782.2| PREDICTED: similar to C-type lectin domain family 14, member A
[Canis familiaris].
Length = 489
Score = 85.1 bits (209), Expect = 1e-16
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 3/208 (1%)
Frame = +3
Query: 330 EGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXX 509
E T+ A ACYS H + A+ C +GG L+T++ E + V
Sbjct: 22 EHPTADRAGCSASGACYSLHHATIKRLAAEEACSLRGGALSTVRGGAELQAVLALLRAGP 81
Query: 510 XXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVD---GVEDTPYTNWHKEAKNSCI 680
+ + FW+ L+R + C D PL+GF W+ ++ W +E + SC
Sbjct: 82 GPGGGSKDLL--FWVALERGRSHCTLEDEPLRGFSWLSPDVSGSESDTLQWVEEPQRSCT 139
Query: 681 SKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPG 860
S+ C L W E C S + G++CK+ F+G+C G
Sbjct: 140 SRSCAGLQATRGVEPAG-----WKEMRCHSRAN------GYLCKYQFEGLCPAPRPGAAS 188
Query: 861 QVTYTTPFQATSSTLQAVPFGSMAHVAC 944
++Y PFQ S+ L P G+ C
Sbjct: 189 NLSYRAPFQLHSAALDFSPPGTQVSALC 216
>ref|NP_001006954.1| thrombomodulin precursor [Canis lupus familiaris].
Length = 578
Score = 79.0 bits (193), Expect(2) = 3e-16
Identities = 64/205 (31%), Positives = 87/205 (42%), Gaps = 11/205 (5%)
Frame = +3
Query: 360 CVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERM 539
C+ C+ G + A C+ GG+L T++S A +
Sbjct: 30 CMEHDCFQLFRGPATFLAASQTCEGLGGHLMTVRSSVAADVISLLLSGDGGDGP------ 83
Query: 540 GRFWIGLQRDKGKCLDSDL--PLKGFRWVDGVEDTPYTNW---HKEAKNSCISKRCVSLL 704
R WIGLQ +G C D PL+GF+WV G T Y+ W H + CV++
Sbjct: 84 -RLWIGLQLRRG-CSDPGQGGPLRGFQWVTGDNRTSYSRWARPHVGPAGPPCAPLCVAVS 141
Query: 705 LDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPL------ALGGPGQV 866
D + PA W E C + +GF+C+F F CRPL A V
Sbjct: 142 -DAAAPAPGE--PAWEEQRCAAE------ADGFLCEFHFAASCRPLLVDARAAAAAGVSV 192
Query: 867 TYTTPFQATSSTLQAVPFGSMAHVA 941
TY+TPF A + QA+P GS A VA
Sbjct: 193 TYSTPFGARGADFQALPAGSSAAVA 217
Score = 25.0 bits (53), Expect(2) = 3e-16
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 1054 CDFNNGGCEQDCFEGGDGSFRCGC 1125
C NGGC++ C G+ RC C
Sbjct: 246 CSVENGGCQRAC-SASAGAPRCLC 268
>ref|XP_546529.2| PREDICTED: similar to layilin [Canis familiaris].
Length = 503
Score = 52.4 bits (124), Expect = 8e-07
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Frame = +3
Query: 396 KLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKG 575
+L+ +EA C GG L +++S++E R ++ G FWIGL+R +
Sbjct: 184 RLNFEEANAACRTDGGQLLSIESQDEQRLIEKFIENLLASD-------GDFWIGLRRREE 236
Query: 576 KCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRL--SKW 749
+ +S + W DG + + NW+ + + SC S+ CV + S PA L +W
Sbjct: 237 RQSNSTACQDLYAWTDG-STSAFRNWYVD-EPSCGSEVCVVMYHQPSAPAGVGGLYMFQW 294
Query: 750 AEGPCGSSRSPGNSVEGFVCKFSFKGMCRP-LALGGPG 860
+ C N F+CK+S + P + GG G
Sbjct: 295 NDDRC-------NMKNNFICKYSDEKPTAPSIKPGGEG 325
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,696,665
Number of extensions: 1348346
Number of successful extensions: 6900
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6850
Number of HSP's successfully gapped: 8
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003254
(1160 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036204.2| complement component C1q receptor precursor [Ho... 342 4e-94
Alignment gi|NP_065137.1| endosialin precursor [Homo sapiens]. 106 2e-32
Alignment gi|NP_000352.1| thrombomodulin precursor [Homo sapiens]. 78 2e-16
Alignment gi|NP_778230.1| C-type lectin domain family 14 member A precurs... 79 6e-15
Alignment gi|NP_849156.1| layilin [Homo sapiens]. 53 5e-07
>ref|NP_036204.2| complement component C1q receptor precursor [Homo sapiens].
Length = 652
Score = 342 bits (877), Expect = 4e-94
Identities = 168/245 (68%), Positives = 188/245 (76%), Gaps = 3/245 (1%)
Frame = +3
Query: 273 MTTSPGXXXXXXXXXVQPREGATSQ-EAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNL 449
M TS G QP G + EAVVCVGTACY+AH GKLSA EAQ HC++ GGNL
Sbjct: 1 MATSMGLLLLLLLLLTQPGAGTGADTEAVVCVGTACYTAHSGKLSAAEAQNHCNQNGGNL 60
Query: 450 ATLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGV 629
AT+KS+EEA+HVQ RM +FWIGLQR+KGKCLD LPLKGF WV G
Sbjct: 61 ATVKSKEEAQHVQRVLAQLLRREAALTARMSKFWIGLQREKGKCLDPSLPLKGFSWVGGG 120
Query: 630 EDTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVC 809
EDTPY+NWHKE +NSCISKRCVSLLLDLS P L SRL KW+EGPCGS SPG+++EGFVC
Sbjct: 121 EDTPYSNWHKELRNSCISKRCVSLLLDLSQPLLPSRLPKWSEGPCGSPGSPGSNIEGFVC 180
Query: 810 KFSFKGMCRPLALGGPGQVTYTTPFQATSSTLQAVPFGSMAHVAC--GDRDESQQPYFLC 983
KFSFKGMCRPLALGGPGQVTYTTPFQ TSS+L+AVPF S A+VAC GD+DE+Q YFLC
Sbjct: 181 KFSFKGMCRPLALGGPGQVTYTTPFQTTSSSLEAVPFASAANVACGEGDKDETQSHYFLC 240
Query: 984 KEKAP 998
KEKAP
Sbjct: 241 KEKAP 245
Score = 108 bits (271), Expect = 7e-24
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 2/72 (2%)
Frame = +1
Query: 946 GTGTRVSSLTSY--ARRRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRC 1119
G G + + + Y + + P+VF+W SSGPLC+SPK GC+FNNGGC QDCFEGGDGSF C
Sbjct: 226 GEGDKDETQSHYFLCKEKAPDVFDWGSSGPLCVSPKYGCNFNNGGCHQDCFEGGDGSFLC 285
Query: 1120 GCRPGYRFLNDL 1155
GCRPG+R L+DL
Sbjct: 286 GCRPGFRLLDDL 297
>ref|NP_065137.1| endosialin precursor [Homo sapiens].
Length = 757
Score = 106 bits (265), Expect(2) = 2e-32
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 3/204 (1%)
Frame = +3
Query: 342 SQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXX 521
++ C ++CY+ + + EA C + GG+LAT ++ EEA+ V
Sbjct: 23 AEPRAACGPSSCYALFPRRRTFLEAWRACRELGGDLATPRTPEEAQRVDSLVGAGPASRL 82
Query: 522 XXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNS-CISKRCVS 698
WIGLQR +C PL+GF W G +DT +TNW + A C ++RCV+
Sbjct: 83 --------LWIGLQRQARQC-QLQRPLRGFTWTTGDQDTAFTNWAQPASGGPCPAQRCVA 133
Query: 699 LLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLA--LGGPGQVTY 872
L AS +W EG C + V+G++C+F F+G C L G G Y
Sbjct: 134 LE--------ASGEHRWLEGSCTLA------VDGYLCQFGFEGACPALQDEAGQAGPAVY 179
Query: 873 TTPFQATSSTLQAVPFGSMAHVAC 944
TTPF S+ + +PFGS+A V C
Sbjct: 180 TTPFHLVSTEFEWLPFGSVAAVQC 203
Score = 52.0 bits (123), Expect(2) = 2e-32
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 988 RRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRFLND 1152
++P W+ +GPLC+ GC +NGGCE +C E DG C C G+R D
Sbjct: 215 KQPEGGVGWSRAGPLCLGT--GCSPDNGGCEHECVEEVDGHVSCRCTEGFRLAAD 267
>ref|NP_000352.1| thrombomodulin precursor [Homo sapiens].
Length = 575
Score = 77.8 bits (190), Expect(2) = 2e-16
Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
Frame = +3
Query: 360 CVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERM 539
CV C++ + G + A CD G+L T++S A +
Sbjct: 30 CVEHDCFALYPGPATFLNASQICDGLRGHLMTVRSSVAADVISLLLNGDGGVGRR----- 84
Query: 540 GRFWIGLQRDKGKCLDSDL--PLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDL 713
R WIGLQ G C D PL+GF+WV G +T Y+ W + N + C L + +
Sbjct: 85 -RLWIGLQLPPG-CGDPKRLGPLRGFQWVTGDNNTSYSRWARLDLNG--APLCGPLCVAV 140
Query: 714 STP-ALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPG------QVTY 872
S A W E C +GF+C+F F CRPLA+ PG +TY
Sbjct: 141 SAAEATVPSEPIWEEQQCEVK------ADGFLCEFHFPATCRPLAVE-PGAAAAAVSITY 193
Query: 873 TTPFQATSSTLQAVPFGSMAHVA 941
TPF A + QA+P GS A VA
Sbjct: 194 GTPFAARGADFQALPVGSSAAVA 216
Score = 26.9 bits (58), Expect(2) = 2e-16
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = +1
Query: 940 PVGTGTRVSSL-TSYARRRPPNVFE--WNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGS 1110
PVG+ V+ L PP + W P C NGGCE C G+
Sbjct: 208 PVGSSAAVAPLGLQLMCTAPPGAVQGHWAREAP----GAWDCSVENGGCEHAC-NAIPGA 262
Query: 1111 FRCGCRPG 1134
RC C G
Sbjct: 263 PRCQCPAG 270
>ref|NP_778230.1| C-type lectin domain family 14 member A precursor [Homo sapiens].
Length = 490
Score = 79.3 bits (194), Expect = 6e-15
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 3/208 (1%)
Frame = +3
Query: 330 EGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXX 509
E T+ A ACYS H + A+ C +GG L+T+++ E R V
Sbjct: 22 EHPTADRAGCSASGACYSLHHATMKRQAAEEACILRGGALSTVRAGAELRAVLALLRAGP 81
Query: 510 XXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVD---GVEDTPYTNWHKEAKNSCI 680
+ + FW+ L+R + C + PL+GF W+ G ++ W +E + SC
Sbjct: 82 GPGGGSKDLL--FWVALERRRSHCTLENEPLRGFSWLSSDPGGLESDTLQWVEEPQRSCT 139
Query: 681 SKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPG 860
++RC L W E C + G++CK+ F+ +C G
Sbjct: 140 ARRCAVLQATGGVEPAG-----WKEMRCHLRAN------GYLCKYQFEVLCPAPRPGAAS 188
Query: 861 QVTYTTPFQATSSTLQAVPFGSMAHVAC 944
++Y PFQ S+ L P G+ C
Sbjct: 189 NLSYRAPFQLHSAALDFSPPGTEVSALC 216
>ref|NP_849156.1| layilin [Homo sapiens].
Length = 374
Score = 53.1 bits (126), Expect = 5e-07
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Frame = +3
Query: 396 KLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKG 575
+L+ +EA+ C + GG L +++SE+E + ++ G FWIGL+R +
Sbjct: 53 RLNFEEAKEACRRDGGQLVSIESEDEQKLIE-------KFIENLLPSDGDFWIGLRRREE 105
Query: 576 KCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPA--LASRLSKW 749
K +S + W DG + + NW+ + + SC S+ CV + S PA + +W
Sbjct: 106 KQSNSTACQDLYAWTDG-SISQFRNWYVD-EPSCGSEVCVVMYHQPSAPAGIGGPYMFQW 163
Query: 750 AEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQVTYTTP 881
+ C N F+CK+S + P + TTP
Sbjct: 164 NDDRC-------NMKNNFICKYSDEKPAVPSREAEGEETELTTP 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,635,172
Number of extensions: 1309364
Number of successful extensions: 6597
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6529
Number of HSP's successfully gapped: 8
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003254
(1160 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034870.1| complement component C1q receptor [Mus musculus]. 309 2e-84
Alignment gi|NP_473383.1| endosialin precursor [Mus musculus]. 115 1e-35
Alignment gi|NP_080085.3| C-type lectin domain family 14 member A precurs... 79 5e-15
Alignment gi|NP_033404.1| thrombomodulin precursor [Mus musculus]. 73 6e-15
Alignment gi|NP_001028706.1| layilin precursor [Mus musculus]. 49 1e-05
>ref|NP_034870.1| complement component C1q receptor [Mus musculus].
Length = 644
Score = 309 bits (792), Expect = 2e-84
Identities = 145/227 (63%), Positives = 174/227 (76%), Gaps = 1/227 (0%)
Frame = +3
Query: 321 QPREGATSQ-EAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTX 497
QP GA + +AVVC GTACY+AHWGKLSA EAQ C++ GGNLAT+KSEEEARHVQ
Sbjct: 16 QPWAGAAADSQAVVCEGTACYTAHWGKLSAAEAQHRCNENGGNLATVKSEEEARHVQQAL 75
Query: 498 XXXXXXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSC 677
+MG+FWIGLQR+KG C DLP++GF WV G EDT Y+NW+K +K+SC
Sbjct: 76 TQLLKTKAPLEAKMGKFWIGLQREKGNCTYHDLPMRGFSWVGGGEDTAYSNWYKASKSSC 135
Query: 678 ISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGP 857
I KRCVSL+LDLS S L KW E PCG+ +PGNS+EGF+CKF+FKGMCRPLALGGP
Sbjct: 136 IFKRCVSLILDLSLTPHPSHLPKWHESPCGTPEAPGNSIEGFLCKFNFKGMCRPLALGGP 195
Query: 858 GQVTYTTPFQATSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEKAP 998
G+VTYTTPFQAT+S+L+AVPF S+A+VACGD +S+ YFLC EK P
Sbjct: 196 GRVTYTTPFQATTSSLEAVPFASVANVACGDEAKSETHYFLCNEKTP 242
Score = 112 bits (279), Expect = 7e-25
Identities = 47/73 (64%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +1
Query: 943 VGTGTRVSSLTSY--ARRRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFR 1116
V G S T Y + P +F W SSGPLC+SPK GC FNNGGC+QDCFEGGDGSFR
Sbjct: 222 VACGDEAKSETHYFLCNEKTPGIFHWGSSGPLCVSPKFGCSFNNGGCQQDCFEGGDGSFR 281
Query: 1117 CGCRPGYRFLNDL 1155
CGCRPG+R L+DL
Sbjct: 282 CGCRPGFRLLDDL 294
>ref|NP_473383.1| endosialin precursor [Mus musculus].
Length = 765
Score = 115 bits (287), Expect(2) = 1e-35
Identities = 72/205 (35%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
Frame = +3
Query: 339 TSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXX 518
T + C ++CY+ + + EA C + GGNLAT ++ EEA+ V
Sbjct: 22 TPEPRAACGPSSCYALFPRRRTFLEAWRACRELGGNLATPRTPEEAQRVDSLVGVGPAN- 80
Query: 519 XXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEA-KNSCISKRCV 695
G WIGLQR +C PL+GF W G +DT +TNW + A + C ++RC
Sbjct: 81 -------GLLWIGLQRQARQC-QPQRPLRGFIWTTGDQDTAFTNWAQPATEGPCPAQRCA 132
Query: 696 SLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCR--PLALGGPGQVT 869
+L AS +W EG C + V+G++C+F F+G C PL +G G
Sbjct: 133 ALE--------ASGEHRWLEGSCTLA------VDGYLCQFGFEGACPALPLEVGQAGPAV 178
Query: 870 YTTPFQATSSTLQAVPFGSMAHVAC 944
YTTPF SS + +PFGS+A V C
Sbjct: 179 YTTPFNLVSSEFEWLPFGSVAAVQC 203
Score = 53.9 bits (128), Expect(2) = 1e-35
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 988 RRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRFLND 1152
++P W+ +GPLC P GC +NGGCE +C E DG+ C C G+R D
Sbjct: 215 KQPSGGVGWSQTGPLC--PGTGCGPDNGGCEHECVEEVDGAVSCRCSEGFRLAAD 267
>ref|NP_080085.3| C-type lectin domain family 14 member A precursor [Mus musculus].
Length = 459
Score = 79.3 bits (194), Expect = 5e-15
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 4/209 (1%)
Frame = +3
Query: 330 EGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXX 509
E T+ A ACYS H A+ C +GG L+T+ S E + V
Sbjct: 22 EHPTADRAACSASGACYSLHHATFKRRAAEEACSLRGGTLSTVHSGSEFQAVLLLLRAGP 81
Query: 510 XXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWV----DGVEDTPYTNWHKEAKNSC 677
+ + FW+ L+R +C PL+GF W+ + ED+P W +E + SC
Sbjct: 82 GPGGGSKDLL--FWVALERSISQCTQEKEPLRGFSWLHPDSEDSEDSPLP-WVEEPQRSC 138
Query: 678 ISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGP 857
++C +L W E C +G++CK+ F+ +C G
Sbjct: 139 TVRKCAALQATRGVEPAG-----WKEMRCHLR------TDGYLCKYQFEVLCPAPRPGAA 187
Query: 858 GQVTYTTPFQATSSTLQAVPFGSMAHVAC 944
+++ PF+ +SS L P G+ C
Sbjct: 188 SNLSFQAPFRLSSSALDFSPPGTEVSAMC 216
>ref|NP_033404.1| thrombomodulin precursor [Mus musculus].
Length = 577
Score = 73.2 bits (178), Expect(2) = 6e-15
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 9/202 (4%)
Frame = +3
Query: 360 CVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERM 539
CV C++ G + +A C + G+L T++S A +
Sbjct: 30 CVEHECFALFQGPATFLDASQACQRLQGHLMTVRSSVAADVISLLLSQSSMDLGP----- 84
Query: 540 GRFWIGLQRDKGKCLDSDL--PLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDL 713
WIGLQ +G C D PL+GF+WV G T Y+ W + N + C L + +
Sbjct: 85 ---WIGLQLPQG-CDDPVHLGPLRGFQWVTGDNHTSYSRWAR--PNDQTAPLCGPLCVTV 138
Query: 714 STPA-LASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPG------QVTY 872
ST A W E PC + +GF+C+F F CRPL + TY
Sbjct: 139 STATEAAPGEPAWEEKPCET------ETQGFLCEFYFTASCRPLTVNTRDPEAAHISSTY 192
Query: 873 TTPFQATSSTLQAVPFGSMAHV 938
TPF + + Q +P GS A V
Sbjct: 193 NTPFGVSGADFQTLPVGSSAAV 214
Score = 26.2 bits (56), Expect(2) = 6e-15
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Frame = +1
Query: 940 PVGTGTRVSSL-TSYARRRPPNVFE----WNSSGPLCISPKLGCDFNNGGCEQDC 1089
PVG+ V L R PP E W ++G C NGGCE C
Sbjct: 207 PVGSSAAVEPLGLELVCRAPPGTSEGHWAWEATGAW------NCSVENGGCEYLC 255
>ref|NP_001028706.1| layilin precursor [Mus musculus].
Length = 381
Score = 48.5 bits (114), Expect = 1e-05
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 2/142 (1%)
Frame = +3
Query: 396 KLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKG 575
+L+ +EA+ C + GG L ++++E+E R ++ G FWIGL+R +
Sbjct: 61 RLNFEEAKETCMEDGGQLVSIETEDEQRLIE-------KFIENLLASDGDFWIGLKRLEE 113
Query: 576 KCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTP--ALASRLSKW 749
K ++ + W DG + + NW+ + + SC S+ CV + S P S + +W
Sbjct: 114 KQSNNTACQDLYAWTDG-STSQFRNWYVD-EPSCGSEVCVVMYHQPSAPPGIGGSYMFQW 171
Query: 750 AEGPCGSSRSPGNSVEGFVCKF 815
+ C N F+CK+
Sbjct: 172 NDDRC-------NMKNNFICKY 186
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,325,951
Number of extensions: 1079030
Number of successful extensions: 5040
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4994
Number of HSP's successfully gapped: 8
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003254
(1160 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359965.1| PREDICTED: complement component C1q receptor... 458 e-129
Alignment gi|XP_003122563.1| PREDICTED: endosialin-like [Sus scrofa]. 103 1e-32
Alignment gi|XP_001929254.1| PREDICTED: c-type lectin domain family 14 me... 85 7e-17
Alignment gi|NP_001124204.1| thrombomodulin [Sus scrofa]. 66 4e-13
Alignment gi|XP_003129886.1| PREDICTED: layilin-like [Sus scrofa]. 56 4e-08
>ref|XP_003359965.1| PREDICTED: complement component C1q receptor [Sus scrofa].
Length = 505
Score = 458 bits (1179), Expect = e-129
Identities = 221/242 (91%), Positives = 221/242 (91%)
Frame = +3
Query: 273 MTTSPGXXXXXXXXXVQPREGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLA 452
MTTSPG VQPREGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLA
Sbjct: 1 MTTSPGLLLLLLLLLVQPREGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLA 60
Query: 453 TLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVE 632
TLKSEEEARHVQGT ERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVE
Sbjct: 61 TLKSEEEARHVQGTLAQLLQPGAPLAERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVE 120
Query: 633 DTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCK 812
DTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCK
Sbjct: 121 DTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCK 180
Query: 813 FSFKGMCRPLALGGPGQVTYTTPFQATSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEK 992
FSFKGMCRPLALGGPGQVTYTTPFQATSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEK
Sbjct: 181 FSFKGMCRPLALGGPGQVTYTTPFQATSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEK 240
Query: 993 AP 998
AP
Sbjct: 241 AP 242
Score = 127 bits (318), Expect = 2e-29
Identities = 57/76 (75%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Frame = +1
Query: 934 MSPVGTGTRVSSLTSY--ARRRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDG 1107
M+ V G R S Y + + PNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDG
Sbjct: 219 MAHVACGDRDESQQPYFLCKEKAPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDG 278
Query: 1108 SFRCGCRPGYRFLNDL 1155
SFRCGCRPGYR L+DL
Sbjct: 279 SFRCGCRPGYRLLDDL 294
>ref|XP_003122563.1| PREDICTED: endosialin-like [Sus scrofa].
Length = 769
Score = 103 bits (258), Expect(2) = 1e-32
Identities = 67/198 (33%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Frame = +3
Query: 360 CVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERM 539
C +CY+ + + EA C + GG+LAT ++ EEA+ V
Sbjct: 29 CSPGSCYALFPRRRTFLEAWRACRELGGDLATPRTPEEAQRVDSLVGSGPPSRL------ 82
Query: 540 GRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNS-CISKRCVSLLLDLS 716
WIGLQR +C PL+GF W G +DT +TNW + A C ++RC +L
Sbjct: 83 --LWIGLQRQARQC-QPQRPLRGFTWTTGDQDTAFTNWAQPATGGPCPAQRCAALE---- 135
Query: 717 TPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLA--LGGPGQVTYTTPFQA 890
AS +W EG C + V+G++C+F F+G C L G G YTTPF
Sbjct: 136 ----ASGEHRWLEGSCTLA------VDGYLCQFGFEGSCPALPDEAGQAGPAVYTTPFHL 185
Query: 891 TSSTLQAVPFGSMAHVAC 944
S+ + +PFGS+A V C
Sbjct: 186 VSTEFEWLPFGSVAAVPC 203
Score = 54.7 bits (130), Expect(2) = 1e-32
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +1
Query: 988 RRPPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRFLND 1152
++P W+ +GPLC P GC +NGGCE +C E DG C C G+R D
Sbjct: 215 KQPDGGVGWSRTGPLC--PGTGCGPDNGGCEHECVEEADGRVSCRCTEGFRLAED 267
>ref|XP_001929254.1| PREDICTED: c-type lectin domain family 14 member A-like [Sus
scrofa].
Length = 493
Score = 85.1 bits (209), Expect = 7e-17
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 4/209 (1%)
Frame = +3
Query: 330 EGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXX 509
E T+ AV ACYS H A+ C+ +GG L+T++ E R V
Sbjct: 22 EHPTADRAVCLASGACYSLHHATFKRQMAEEACNLRGGVLSTVRGGAELRAVLTLLRAGP 81
Query: 510 XXXXXXXERMGRFWIGLQRDKGKCLDSDLPLKGFRWVD----GVEDTPYTNWHKEAKNSC 677
+ + FW+ L+R + C + PL+GF W+ G ++ W +E + SC
Sbjct: 82 GPGGGSKDLL--FWVALERRRSHCTLENEPLRGFSWLSPDDVGESESDTLQWVEEPQRSC 139
Query: 678 ISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGP 857
++ C L +T + + W E C + G++CK+ F+G+C G
Sbjct: 140 TARSCAGLQ---ATGGIEP--AGWKEMRCHGRAN------GYLCKYQFEGLCPAPRPGAA 188
Query: 858 GQVTYTTPFQATSSTLQAVPFGSMAHVAC 944
++Y PFQ S+ L P G+ C
Sbjct: 189 SNLSYRAPFQLYSAALDFSPPGTEVSALC 217
>ref|NP_001124204.1| thrombomodulin [Sus scrofa].
Length = 579
Score = 65.9 bits (159), Expect(2) = 4e-13
Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 10/203 (4%)
Frame = +3
Query: 360 CVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERM 539
CV C++ G + A C+ G+L T++S A + E
Sbjct: 30 CVEHDCFALFRGPATFLTASQACEHLQGHLMTVRSSVAAEVIS---------LLLSGEGD 80
Query: 540 G-RFWIGLQRDKGKCLDSDL--PLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLD 710
G R WIGLQ + C++ L+GF+WV G T Y+ W + + C +L +
Sbjct: 81 GPRLWIGLQLPRD-CVEPRHRGALRGFQWVTGDNHTSYSMWARPRGDE--EPICGTLCVA 137
Query: 711 LSTP-ALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPG------QVT 869
+S A W E C + +GF+C+F F C+PLA+ +T
Sbjct: 138 VSAAGAPVPGEPAWEEQQCEAE------ADGFLCEFHFPASCQPLAVKSDAAEAASFSIT 191
Query: 870 YTTPFQATSSTLQAVPFGSMAHV 938
Y+TPF A + QA+P GS V
Sbjct: 192 YSTPFGARGADFQALPVGSSVAV 214
Score = 26.9 bits (58), Expect(2) = 4e-13
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 1054 CDFNNGGCEQDCFEGGDGSFRCGC 1125
C NGGC+ C G G RC C
Sbjct: 244 CGVENGGCQHAC-NGSAGESRCLC 266
>ref|XP_003129886.1| PREDICTED: layilin-like [Sus scrofa].
Length = 376
Score = 55.8 bits (133), Expect = 4e-08
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Frame = +3
Query: 396 KLSADEAQLHCDKKGGNLATLKSEEEARHVQGTXXXXXXXXXXXXERMGRFWIGLQRDKG 575
+L+ +EA+ C + GG L +++SE+E R ++ G FWIGL+R +
Sbjct: 53 RLNFEEARAACGRDGGQLVSIESEDEQRLIE-------KFIENLHASDGDFWIGLRRWEE 105
Query: 576 KCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPA-LASR-LSKW 749
K +S + W DG T + NW+ + + SC S+ CV + S PA + R + +W
Sbjct: 106 KQSNSTACQDLYAWTDGSTAT-FRNWYAD-EPSCGSEVCVVMYHQPSAPAGIGGRYMFQW 163
Query: 750 AEGPCGSSRSPGNSVEGFVCKFS-FKGMCRPLALGGPG 860
+ C + F+CK+S K P GG G
Sbjct: 164 NDDRCTMKNN-------FICKYSEEKPTAPPTRPGGEG 194
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,272,056
Number of extensions: 885386
Number of successful extensions: 4241
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4207
Number of HSP's successfully gapped: 8
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003254
(1160 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1572 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1572 bits (793), Expect = 0.0
Identities = 829/842 (98%), Gaps = 1/842 (0%)
Strand = Plus / Plus
Query: 319 tccagccccgggagggggccaccagccaggaggccgtggtctgtgtggggactgcctgct 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382126 tccagccccgggagggggccaccagccaggaggccgtggtctgtgtggggactgcctgct 34382185
Query: 379 actcggcccactggggcaagctgagtgcagatgaagcccagctccactgcgacaagaagg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382186 actcggcccactggggcaagctgagtgcagatgaagcccagctccactgcgacaagaagg 34382245
Query: 439 ggggcaacctggccacgctcaagagcgaggaggaggcccggcacgtccagggcaccctgg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382246 ggggcaacctggccacgctcaagagcgaggaggaggcccggcacgtccagggcaccctgg 34382305
Query: 499 cccagctattgcagcctggggcgcccctggcagagcgcatgggccggttctggattgggc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382306 cccagctattgcagcctggggcgcccctggcagagcgcatgggccggttctggattgggc 34382365
Query: 559 tccagcgagacaagggcaagtgcttggacagtgacctgccgctgaagggcttccgctggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382366 tccagcgagacaagggcaagtgcttggacagtgacctgccgctgaagggcttccgctggg 34382425
Query: 619 tggatggcgtggaggatacgccatacaccaactggcacaaggaggccaagaactcctgca 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382426 tggatggcgtggaggatacgccatacaccaactggcacaaggaggccaagaactcctgca 34382485
Query: 679 tctcgaagcgctgcgtgtccctgctgttggacctgtccacgcccgccctggccagccgcc 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382486 tctcgaagcgctgcgtgtccctgctgttggacctgtccacgcccgccctggccagccgcc 34382545
Query: 739 tctccaagtgggccgagggcccgtgcgggagctcccgatctcccggaaacagcgtcgagg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382546 tctccaagtgggccgagggcccgtgcgggagctcccgatctcccggaaacagcgtcgagg 34382605
Query: 799 gctttgtgtgcaagttcagcttcaaaggcatgtgccggccgctggccctggggggcccgg 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382606 gctttgtgtgcaagttcagcttcaaaggcatgtgccggccgctggccctggggggcccgg 34382665
Query: 859 gccaggtgacctacaccacccccttccaggccaccagctccaccctgcaggctgtgccct 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382666 gccaggtgacctacaccacccccttccaggccaccagctccaccctgcaggctgtgccct 34382725
Query: 919 tcggctccatggcccatgtcgcctgtggggacagggacgagagtcagcagccttacttcc 978
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382726 tcggctccatggcccacgtcgcctgtggggacagggacgagagtcagcagccttacttcc 34382785
Query: 979 tatgcaaggagaaggccccccaatgtgttcgagtggaacagctcagggcccctctgcatc 1038
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382786 tatgcaaggagaagg-cccccaatgtgttcgagtggaacagctcagggcccctctgcatc 34382844
Query: 1039 agccccaagcttggctgcgacttcaacaatgggggctgtgaacaggactgctttgaannn 1098
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 34382845 agccccaagcttggctgcgacttcaacaatgggggctgtgagcaggactgctttgaaggg 34382904
Query: 1099 nnnnacggctctttccgctgtggctgccggccggggtaccggttcctgaacgacctgttc 1158
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 34382905 ggggacggctctttccgctgtggctgccggccggggtaccggctcctggacgacctggtc 34382964
Query: 1159 tc 1160
||
Sbjct: 34382965 tc 34382966
Score = 1023 bits (516), Expect = 0.0
Identities = 516/516 (100%)
Strand = Plus / Minus
Query: 319 tccagccccgggagggggccaccagccaggaggccgtggtctgtgtggggactgcctgct 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291876 tccagccccgggagggggccaccagccaggaggccgtggtctgtgtggggactgcctgct 34291817
Query: 379 actcggcccactggggcaagctgagtgcagatgaagcccagctccactgcgacaagaagg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291816 actcggcccactggggcaagctgagtgcagatgaagcccagctccactgcgacaagaagg 34291757
Query: 439 ggggcaacctggccacgctcaagagcgaggaggaggcccggcacgtccagggcaccctgg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291756 ggggcaacctggccacgctcaagagcgaggaggaggcccggcacgtccagggcaccctgg 34291697
Query: 499 cccagctattgcagcctggggcgcccctggcagagcgcatgggccggttctggattgggc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291696 cccagctattgcagcctggggcgcccctggcagagcgcatgggccggttctggattgggc 34291637
Query: 559 tccagcgagacaagggcaagtgcttggacagtgacctgccgctgaagggcttccgctggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291636 tccagcgagacaagggcaagtgcttggacagtgacctgccgctgaagggcttccgctggg 34291577
Query: 619 tggatggcgtggaggatacgccatacaccaactggcacaaggaggccaagaactcctgca 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291576 tggatggcgtggaggatacgccatacaccaactggcacaaggaggccaagaactcctgca 34291517
Query: 679 tctcgaagcgctgcgtgtccctgctgttggacctgtccacgcccgccctggccagccgcc 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291516 tctcgaagcgctgcgtgtccctgctgttggacctgtccacgcccgccctggccagccgcc 34291457
Query: 739 tctccaagtgggccgagggcccgtgcgggagctcccgatctcccggaaacagcgtcgagg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291456 tctccaagtgggccgagggcccgtgcgggagctcccgatctcccggaaacagcgtcgagg 34291397
Query: 799 gctttgtgtgcaagttcagcttcaaaggcatgtgcc 834
||||||||||||||||||||||||||||||||||||
Sbjct: 34291396 gctttgtgtgcaagttcagcttcaaaggcatgtgcc 34291361
Score = 571 bits (288), Expect = e-160
Identities = 288/288 (100%)
Strand = Plus / Minus
Query: 4 tccttttatgaacaacaaaaccgtgatgaaggcaacaggagtcagaagctattcagcaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34292194 tccttttatgaacaacaaaaccgtgatgaaggcaacaggagtcagaagctattcagcaca 34292135
Query: 64 ggaagcccccgtatccggtgagggataagaagcgagcagcacaggatgcgccttgggtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34292134 ggaagcccccgtatccggtgagggataagaagcgagcagcacaggatgcgccttgggtca 34292075
Query: 124 gggggccgcagagagccctcagcctttgtgtccttctctgtgacggagcgtccacatctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34292074 gggggccgcagagagccctcagcctttgtgtccttctctgtgacggagcgtccacatctg 34292015
Query: 184 agccctcggctctcctccgagttcagccccggctcctgccatcacggaccggctgccagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34292014 agccctcggctctcctccgagttcagccccggctcctgccatcacggaccggctgccagc 34291955
Query: 244 ttcccgcccagggagacacggaggccgcaatgactacctcccccggat 291
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34291954 ttcccgcccagggagacacggaggccgcaatgactacctcccccggat 34291907
Score = 571 bits (288), Expect = e-160
Identities = 288/288 (100%)
Strand = Plus / Plus
Query: 4 tccttttatgaacaacaaaaccgtgatgaaggcaacaggagtcagaagctattcagcaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34381811 tccttttatgaacaacaaaaccgtgatgaaggcaacaggagtcagaagctattcagcaca 34381870
Query: 64 ggaagcccccgtatccggtgagggataagaagcgagcagcacaggatgcgccttgggtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34381871 ggaagcccccgtatccggtgagggataagaagcgagcagcacaggatgcgccttgggtca 34381930
Query: 124 gggggccgcagagagccctcagcctttgtgtccttctctgtgacggagcgtccacatctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34381931 gggggccgcagagagccctcagcctttgtgtccttctctgtgacggagcgtccacatctg 34381990
Query: 184 agccctcggctctcctccgagttcagccccggctcctgccatcacggaccggctgccagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34381991 agccctcggctctcctccgagttcagccccggctcctgccatcacggaccggctgccagc 34382050
Query: 244 ttcccgcccagggagacacggaggccgcaatgactacctcccccggat 291
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34382051 ttcccgcccagggagacacggaggccgcaatgactacctcccccggat 34382098
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,594,109
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 4
Length of query: 1160
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1139
Effective length of database: 2,808,413,156
Effective search space: 3198782584684
Effective search space used: 3198782584684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)