Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003255
(1056 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094535.1| inositol oxygenase [Bos taurus]. 555 e-158
Alignment gi|XP_002688032.1| PREDICTED: inositol oxygenase-like [Bos taur... 151 1e-36
>ref|NP_001094535.1| inositol oxygenase [Bos taurus].
Length = 285
Score = 555 bits (1429), Expect = e-158
Identities = 255/280 (91%), Positives = 265/280 (94%)
Frame = +3
Query: 33 DPDPSQVYRPDMDPEAAKDKGSFRNYTSGPLLDRVFRTYKLMHTWQTVDFVRKKHAQFGG 212
DPDPS V + DM+PEAAKDK SFRNYTSGPLLDRVF TYKLMHTWQTVDFVR+KHAQFGG
Sbjct: 6 DPDPSLVSQRDMEPEAAKDKDSFRNYTSGPLLDRVFATYKLMHTWQTVDFVRRKHAQFGG 65
Query: 213 FSYKRMTVLEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 392
FSYKRMTV+EAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL
Sbjct: 66 FSYKRMTVMEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 125
Query: 393 GKVLVLAGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHCGL 572
GKVL LAGEPQWAVVGDTFPVGCRPQASVVF D TFQDNPDLQDP+YSTELGMYQPHCGL
Sbjct: 126 GKVLALAGEPQWAVVGDTFPVGCRPQASVVFRDCTFQDNPDLQDPLYSTELGMYQPHCGL 185
Query: 573 ENVLMSWGHDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAMLPW 752
ENVLMSWGHDEYMY+MMKFNKF+LP EAFYIIRFHSFYPWH GDY+QLCNEQDLAMLPW
Sbjct: 186 ENVLMSWGHDEYMYRMMKFNKFALPPEAFYIIRFHSFYPWHKFGDYQQLCNEQDLAMLPW 245
Query: 753 VQEFNKFDLYTKGSDLPDVDELRPYYQGLIDKYCPGVLCW 872
VQEFNKFDLYTK S LPDV LRPYYQGL+DKYCPG+LCW
Sbjct: 246 VQEFNKFDLYTKSSSLPDVAALRPYYQGLVDKYCPGILCW 285
>ref|XP_002688032.1| PREDICTED: inositol oxygenase-like [Bos taurus].
Length = 109
Score = 151 bits (381), Expect = 1e-36
Identities = 64/74 (86%), Positives = 68/74 (91%)
Frame = +3
Query: 651 EAFYIIRFHSFYPWHTGGDYRQLCNEQDLAMLPWVQEFNKFDLYTKGSDLPDVDELRPYY 830
+AFYIIRFHSFYPWH GDY+QLCNEQDLAMLPWVQEFNKFDLYTK S LPDV LRPYY
Sbjct: 36 QAFYIIRFHSFYPWHKFGDYQQLCNEQDLAMLPWVQEFNKFDLYTKSSSLPDVAALRPYY 95
Query: 831 QGLIDKYCPGVLCW 872
QGL+DKYCPG+LCW
Sbjct: 96 QGLVDKYCPGILCW 109
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,621,567
Number of extensions: 1373289
Number of successful extensions: 6963
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6891
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003255
(1056 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538310.2| PREDICTED: similar to Inositol oxygenase (Myo-i... 544 e-155
>ref|XP_538310.2| PREDICTED: similar to Inositol oxygenase (Myo-inositol oxygenase)
(Aldehyde reductase-like 6) (Renal-specific
oxidoreductase) (Kidney-specific protein 32) [Canis
familiaris].
Length = 285
Score = 544 bits (1401), Expect = e-155
Identities = 252/279 (90%), Positives = 264/279 (94%)
Frame = +3
Query: 36 PDPSQVYRPDMDPEAAKDKGSFRNYTSGPLLDRVFRTYKLMHTWQTVDFVRKKHAQFGGF 215
PDPS VYRPDMDPE AKDKGSFRNY +GPLLDRVF TYKLMHT+QTVDFVRKKH QFGGF
Sbjct: 7 PDPSLVYRPDMDPEKAKDKGSFRNYEAGPLLDRVFATYKLMHTYQTVDFVRKKHIQFGGF 66
Query: 216 SYKRMTVLEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 395
SYK+MTVLEAVDMLD LVDESDPDVDFPNS+HAFQTAEGIRKAHPDKDWFHLVGLLHDLG
Sbjct: 67 SYKKMTVLEAVDMLDELVDESDPDVDFPNSYHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 126
Query: 396 KVLVLAGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHCGLE 575
KVLVLAGEPQWAVVGDTFPVGC+PQASVVF +STFQDNPDLQDP YSTELGMYQPHCGLE
Sbjct: 127 KVLVLAGEPQWAVVGDTFPVGCQPQASVVFRESTFQDNPDLQDPRYSTELGMYQPHCGLE 186
Query: 576 NVLMSWGHDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAMLPWV 755
NVLMSWGHDEYMYQ+MKFNKF+LP EAFY+IRFHSFYPWHTGGDYRQLC+E DLAMLPWV
Sbjct: 187 NVLMSWGHDEYMYQVMKFNKFALPPEAFYMIRFHSFYPWHTGGDYRQLCSELDLAMLPWV 246
Query: 756 QEFNKFDLYTKGSDLPDVDELRPYYQGLIDKYCPGVLCW 872
QEF+KFDLYTK +LPDV LRPYYQGLIDKYCPGVL W
Sbjct: 247 QEFSKFDLYTKCPELPDVATLRPYYQGLIDKYCPGVLSW 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,282,548
Number of extensions: 1397109
Number of successful extensions: 7396
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7238
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003255
(1056 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060054.4| inositol oxygenase [Homo sapiens]. 548 e-156
>ref|NP_060054.4| inositol oxygenase [Homo sapiens].
Length = 285
Score = 548 bits (1413), Expect = e-156
Identities = 251/279 (89%), Positives = 264/279 (94%)
Frame = +3
Query: 36 PDPSQVYRPDMDPEAAKDKGSFRNYTSGPLLDRVFRTYKLMHTWQTVDFVRKKHAQFGGF 215
PDPS VYRPD+DPE AKDK SFRNYTSGPLLDRVF TYKLMHT QTVDFVR KHAQFGGF
Sbjct: 7 PDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKHAQFGGF 66
Query: 216 SYKRMTVLEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 395
SYK+MTV+EAVD+LDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG
Sbjct: 67 SYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 126
Query: 396 KVLVLAGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHCGLE 575
KVL L GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDP YSTELGMYQPHCGL+
Sbjct: 127 KVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLD 186
Query: 576 NVLMSWGHDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAMLPWV 755
VLMSWGHDEYMYQ+MKFNKFSLP EAFY+IRFHSFYPWHTG DY+QLC++QDLAMLPWV
Sbjct: 187 RVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWV 246
Query: 756 QEFNKFDLYTKGSDLPDVDELRPYYQGLIDKYCPGVLCW 872
+EFNKFDLYTK DLPDVD+LRPYYQGLIDKYCPG+L W
Sbjct: 247 REFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW 285
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,387,275
Number of extensions: 1358965
Number of successful extensions: 6827
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6693
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003255
(1056 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064361.2| inositol oxygenase [Mus musculus]. 535 e-152
>ref|NP_064361.2| inositol oxygenase [Mus musculus].
Length = 285
Score = 535 bits (1377), Expect = e-152
Identities = 244/279 (87%), Positives = 257/279 (92%)
Frame = +3
Query: 36 PDPSQVYRPDMDPEAAKDKGSFRNYTSGPLLDRVFRTYKLMHTWQTVDFVRKKHAQFGGF 215
PDPS VYRPD+DPE AK K SFRNYTSGPLLDRVF TYKLMHT QTVDFV +K Q+G F
Sbjct: 7 PDPSLVYRPDVDPEMAKSKDSFRNYTSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSF 66
Query: 216 SYKRMTVLEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 395
SYK+MT++EAV MLD LVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG
Sbjct: 67 SYKKMTIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 126
Query: 396 KVLVLAGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHCGLE 575
K++ L GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDP YSTELGMYQPHCGLE
Sbjct: 127 KIMALWGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLE 186
Query: 576 NVLMSWGHDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAMLPWV 755
NVLMSWGHDEY+YQMMKFNKFSLP EAFY+IRFHSFYPWHTGGDYRQLC++QDL MLPWV
Sbjct: 187 NVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWV 246
Query: 756 QEFNKFDLYTKGSDLPDVDELRPYYQGLIDKYCPGVLCW 872
QEFNKFDLYTK DLPDV+ LRPYYQGLIDKYCPG L W
Sbjct: 247 QEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 285
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,468,321
Number of extensions: 1119910
Number of successful extensions: 5304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5223
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003255
(1056 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999267.1| inositol oxygenase [Sus scrofa]. 609 e-175
>ref|NP_999267.1| inositol oxygenase [Sus scrofa].
Length = 282
Score = 609 bits (1570), Expect = e-175
Identities = 280/282 (99%), Positives = 281/282 (99%)
Frame = +3
Query: 27 MKDPDPSQVYRPDMDPEAAKDKGSFRNYTSGPLLDRVFRTYKLMHTWQTVDFVRKKHAQF 206
MKDPDPSQVYRPDMDPEAAKDKGSFRNYTSGPLLDRVFRTYKLMHTWQTVDFVRKKHAQF
Sbjct: 1 MKDPDPSQVYRPDMDPEAAKDKGSFRNYTSGPLLDRVFRTYKLMHTWQTVDFVRKKHAQF 60
Query: 207 GGFSYKRMTVLEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLH 386
GGFSYKRMTVLEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLH
Sbjct: 61 GGFSYKRMTVLEAVDMLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLH 120
Query: 387 DLGKVLVLAGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHC 566
DLGKVLVLAGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHC
Sbjct: 121 DLGKVLVLAGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPVYSTELGMYQPHC 180
Query: 567 GLENVLMSWGHDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAML 746
GLEN LMSWGHDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAML
Sbjct: 181 GLENALMSWGHDEYMYQMMKFNKFSLPGEAFYIIRFHSFYPWHTGGDYRQLCNEQDLAML 240
Query: 747 PWVQEFNKFDLYTKGSDLPDVDELRPYYQGLIDKYCPGVLCW 872
PWVQEFNKFDLYTKGSD+PDVDELRPYYQGLIDKYCPGVLCW
Sbjct: 241 PWVQEFNKFDLYTKGSDMPDVDELRPYYQGLIDKYCPGVLCW 282
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,712,047
Number of extensions: 911771
Number of successful extensions: 4535
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4488
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003255
(1056 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 488 e-135
>Sscrofa_Chr05
|| Length = 111506441
Score = 488 bits (246), Expect = e-135
Identities = 259/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 767 caagttcgatctctacaccaagggctccgacctgccggacgtggacgagctgcggcccta 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110532091 caagttcgatctctacaccaagggctccgacctgccggacgtggacgagctgcggcccta 110532150
Query: 827 ctaccaggggctcattgacaagtactgccccggtgtcctgtgctggtgaccgacctgtcc 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110532151 ctaccaggggctcattgacaagtactgccccggtgtcctgtgctggtgaccgacctgtcc 110532210
Query: 887 acctgcccaagcctggctgggtaccccgggtgacagtcgctgtcaggcacagggatgacc 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110532211 acctgcccaagcctggctgggtaccccgggtgacagtcgctgtcaggcacagggatgacc 110532270
Query: 947 caacgcggcctttccaggggtccccacaggcccacctgcactccctgcccggttggcccc 1006
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110532271 caccgcggcctttccaggggtccccacaggcccacctgcactccctgcccggttggcccc 110532330
Query: 1007 cat-cccaggggccataaaagc 1027
||| ||||||||| ||||||||
Sbjct: 110532331 catccccaggggcaataaaagc 110532352
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 193 agcacgcccagttcgggggcttctcctacaagagaatgactgtcttggaggccgtggaca 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110530920 agcacgcccagttcgggggcttctcctacaagagaatgactgtcttggaggccgtggaca 110530979
Query: 253 tgctagacgggctggtggacgagtccgaccccgacgtggacttccccaactccttccacg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110530980 tgctagacgggctggtggacgagtccgaccccgacgtggacttccccaactccttccacg 110531039
Query: 313 ccttccagacggccgagggcatccggaaggcccaccctgacaaag 357
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531040 ccttccagacggccgagggcatccggaaggcccaccctgacaaag 110531084
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 652 aggccttctacatcatccgcttccactccttctacccgtggcacacgggcggcgactacc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531890 aggccttctacatcatccgcttccactccttctacccgtggcacacgggcggcgactacc 110531949
Query: 712 ggcaactgtgcaacgagcaggacctggccatgctgccctgggtgcaggagttcaa 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531950 ggcaactgtgcaacgagcaggacctggccatgctgccctgggtgcaggagttcaa 110532004
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 422 ccagtgggccgtcgttggagacaccttccctgtgggctgccgtccgcaggcctctgtggt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531388 ccagtgggccgtcgttggagacaccttccctgtgggctgccgtccgcaggcctctgtggt 110531447
Query: 482 tttctgcgactctaccttccaggataaccctgaccttcaggaccctgtctacag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531448 tttctgcgactctaccttccaggataaccctgaccttcaggaccctgtctacag 110531501
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 31 aggacccagacccttcccaggtctatcggcctgatatggacccagaggcggccaaagaca 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110530494 aggacccagacccttcccaggtctatcggcctgatatggacccagaggcggccaaagaca 110530553
Query: 91 agggcagcttccgaaactacacg 113
|||||||||||||||||||||||
Sbjct: 110530554 agggcagcttccgaaactacacg 110530576
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 113 gtctggcccgctgctggaccgggtcttccgcacctacaagctgatgcacacgtggcagac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110530761 gtctggcccgctgctggaccgggtcttccgcacctacaagctgatgcacacgtggcagac 110530820
Query: 173 cgtggacttcgtcaggaagaag 194
||||||||||||||||||||||
Sbjct: 110530821 cgtggacttcgtcaggaagaag 110530842
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 533 cagcacagagcttggcatgtaccagccccactgtgggctcgagaatgtcctgatgtcctg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531574 cagcacagagcttggcatgtaccagccccactgtgggctcgagaatgtcctgatgtcctg 110531633
Query: 593 gggccacgatg 603
|||||||||||
Sbjct: 110531634 gggccacgatg 110531644
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 356 agactggttccacctcgtcgggctcctgcatgacctggggaaggtcctggttctggcagg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531204 agactggttccacctcgtcgggctcctgcatgacctggggaaggtcctggttctggcagg 110531263
Query: 416 ggaaccccag 425
||||||||||
Sbjct: 110531264 ggaaccccag 110531273
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 603 gagtacatgtaccagatgatgaagttcaacaaattctccctcccaggagagg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110531745 gagtacatgtaccagatgatgaagttcaacaaattctccctcccaggagagg 110531796
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 2 ctcgccggcactgccccctctcaggatgaagg 33
||||||||||||||||||||||||||||||||
Sbjct: 110530132 ctcgccggcactgccccctctcaggatgaagg 110530163
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,416,428
Number of extensions: 128
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 10
Length of query: 1056
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1035
Effective length of database: 2,808,413,156
Effective search space: 2906707616460
Effective search space used: 2906707616460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)