Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003257
(1250 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092843.1| lysophosphatidic acid phosphatase type 6 [Bo... 452 e-127
Alignment gi|NP_001193896.1| testicular acid phosphatase [Bos taurus]. 64 3e-10
Alignment gi|NP_001092336.1| prostatic acid phosphatase precursor [Bos ta... 60 3e-09
Alignment gi|NP_001069526.1| lysosomal acid phosphatase precursor [Bos ta... 53 5e-07
>ref|NP_001092843.1| lysophosphatidic acid phosphatase type 6 [Bos taurus].
Length = 429
Score = 452 bits (1164), Expect = e-127
Identities = 222/263 (84%), Positives = 243/263 (92%), Gaps = 1/263 (0%)
Frame = +1
Query: 463 MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHG 642
MIS +F++R+WAPVGV TSL +CLHQRRVALAE GAD Q VD++LLELKMVQVVFRHG
Sbjct: 1 MISRVFKLRMWAPVGVLTSLTYCLHQRRVALAEPGGADQQNPVDRNLLELKMVQVVFRHG 60
Query: 643 ARSPLKPLPQEEQ-VEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQYQKTTLKGGV 819
ARSPLKPLPQE+Q VEWK QLLEVPPQTQ +YTVTNLAGGPKPHSPFDSQY +TTLKGG+
Sbjct: 61 ARSPLKPLPQEDQQVEWKSQLLEVPPQTQLEYTVTNLAGGPKPHSPFDSQYHETTLKGGM 120
Query: 820 FAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAG 999
FAGQLTKVGM+QMFALGERLRK YVED PFLSPTFNP+EVFIRSTNIYRNLESTRCLLAG
Sbjct: 121 FAGQLTKVGMEQMFALGERLRKNYVEDIPFLSPTFNPLEVFIRSTNIYRNLESTRCLLAG 180
Query: 1000 LFQRQKEGPIVIHTDKASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGM 1179
LFQRQKEGPIVIHTD+ASSEVLYPNYQ CW+LQ+RTRGR+QAA+LQPGISEDL+ VKEGM
Sbjct: 181 LFQRQKEGPIVIHTDEASSEVLYPNYQYCWNLQKRTRGRRQAASLQPGISEDLKKVKEGM 240
Query: 1180 GIASGDRVDFLILFDNVAAEAVH 1248
GIAS D VDFL+L DN+AAE VH
Sbjct: 241 GIASSDEVDFLVLLDNMAAEQVH 263
>ref|NP_001193896.1| testicular acid phosphatase [Bos taurus].
Length = 431
Score = 63.9 bits (154), Expect = 3e-10
Identities = 58/182 (31%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L V VVFRHG R+PL P + PH S
Sbjct: 31 LVFVAVVFRHGDRAPLASYPTD------------------------------PHKEVAST 60
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
L GQLT+ G++Q LG LR +Y + FLSP + EV+IRST+ R
Sbjct: 61 LWPRGL------GQLTEEGVRQQLELGRFLRSRYED---FLSPEYRREEVYIRSTDFDRT 111
Query: 970 LESTRCLLAGLFQRQKEG-------PIVIHTDKASSEVL--YPNYQNCWSLQERTRGRKQ 1122
LES + LAGLF G PI +HT + + L +P ++C +E R +
Sbjct: 112 LESAQANLAGLFPEAAPGRSEATWRPIPVHTVPVTEDKLLRFPT-RSCPRYRELLREATE 170
Query: 1123 AA 1128
AA
Sbjct: 171 AA 172
>ref|NP_001092336.1| prostatic acid phosphatase precursor [Bos taurus].
Length = 387
Score = 60.5 bits (145), Expect = 3e-09
Identities = 53/177 (29%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
Frame = +1
Query: 607 ELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDS 786
EL+ V +VFRHG RSP++ P + P S +
Sbjct: 36 ELRFVTLVFRHGDRSPIETFPND----------------------------PIKESSWPQ 67
Query: 787 QYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYR 966
+ GQLT++GM Q + LG+ +RK+Y FL+ ++ +V +RST+I R
Sbjct: 68 GF-----------GQLTQLGMAQHYELGQYIRKRYEN---FLNESYKREQVHVRSTDIDR 113
Query: 967 NLESTRCLLAGLFQRQKEG-----------PIVIHTDKAS-SEVLYPNYQNCWSLQE 1101
L S LA LF EG PI +HT S ++LY ++NC QE
Sbjct: 114 TLMSAMTNLAALF--PPEGISIWNPSLPWQPIPVHTVPVSEDQLLYLPFRNCPRFQE 168
>ref|NP_001069526.1| lysosomal acid phosphatase precursor [Bos taurus].
Length = 423
Score = 53.1 bits (126), Expect = 5e-07
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWK-PQLLEVPPQTQFDYTVTNLAGGPKPHSPFDS 786
L+ V +++RHG RSP+K P++ E K PQ
Sbjct: 33 LRFVTLLYRHGDRSPVKAYPKDPHQEDKWPQGF--------------------------- 65
Query: 787 QYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYR 966
GQLTK GM Q + LG+ LR++Y FL+ +++ EV++RST+ R
Sbjct: 66 -------------GQLTKEGMLQHWELGQALRQRY---HGFLNTSYHRQEVYVRSTDFDR 109
Query: 967 NLESTRCLLAGLF 1005
L S LAGLF
Sbjct: 110 TLMSAEANLAGLF 122
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,391,416
Number of extensions: 1759875
Number of successful extensions: 9090
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8986
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,207,134
Effective search space: 4418418674
Effective search space used: 4418418674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003257
(1250 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533030.2| PREDICTED: similar to acid phosphatase 6, lysop... 432 e-121
Alignment gi|XP_542782.2| PREDICTED: similar to acid phosphatase, prostat... 63 7e-10
Alignment gi|XP_541473.2| PREDICTED: similar to testicular acid phosphata... 60 4e-09
Alignment gi|XP_861048.1| PREDICTED: similar to Lysosomal acid phosphatas... 55 2e-07
Alignment gi|XP_850233.1| PREDICTED: similar to Lysosomal acid phosphatas... 55 2e-07
Alignment gi|XP_533190.2| PREDICTED: similar to Lysosomal acid phosphatas... 54 3e-07
>ref|XP_533030.2| PREDICTED: similar to acid phosphatase 6, lysophosphatidic [Canis
familiaris].
Length = 427
Score = 432 bits (1111), Expect = e-121
Identities = 208/262 (79%), Positives = 231/262 (88%)
Frame = +1
Query: 463 MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHG 642
MI+G+F R W PVGV +L +C H+RRVA AE RG D ++ VD+S LELKMVQVVFRHG
Sbjct: 1 MIAGVFSARTWVPVGVLAALAYCAHRRRVARAEPRGPDGRQPVDRSQLELKMVQVVFRHG 60
Query: 643 ARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQYQKTTLKGGVF 822
ARSPLKPLPQ++Q EW QLLEVPP TQFDYT+TNLAGGPKPHSPFDSQY++T LKGG+F
Sbjct: 61 ARSPLKPLPQKQQAEWNLQLLEVPPHTQFDYTITNLAGGPKPHSPFDSQYRETKLKGGMF 120
Query: 823 AGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGL 1002
AGQLT VGMQQMFALGERLRK YVED PFLSPTFNP+EVF+RSTNIYRNLESTRCLLAGL
Sbjct: 121 AGQLTNVGMQQMFALGERLRKNYVEDIPFLSPTFNPLEVFVRSTNIYRNLESTRCLLAGL 180
Query: 1003 FQRQKEGPIVIHTDKASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMG 1182
FQ QKEGPI+IHTD+ASSEVLYPNYQNCW+LQERTRGR++AA+LQPGISEDL+ VKEGMG
Sbjct: 181 FQCQKEGPIIIHTDEASSEVLYPNYQNCWNLQERTRGRRKAASLQPGISEDLQKVKEGMG 240
Query: 1183 IASGDRVDFLILFDNVAAEAVH 1248
I S D VDF L DNVAAE VH
Sbjct: 241 ITSNDGVDFFSLLDNVAAEQVH 262
>ref|XP_542782.2| PREDICTED: similar to acid phosphatase, prostate isoform 1 [Canis
familiaris].
Length = 624
Score = 62.8 bits (151), Expect = 7e-10
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 18/232 (7%)
Frame = +1
Query: 607 ELKMVQVVFRHGARSPLKPLPQE--EQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPF 780
ELK V +VFRHG RSP++ P + ++ W PQ
Sbjct: 240 ELKFVTLVFRHGDRSPIETFPNDPIKEASW--------PQG------------------- 272
Query: 781 DSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNI 960
GQLT++GM+Q + LG+ ++K+Y + FL+ ++ +V+I+ST++
Sbjct: 273 --------------FGQLTQLGMEQHYELGQYIKKRYGK---FLNESYKREQVYIQSTDV 315
Query: 961 YRNLESTRCLLAGLFQRQKEG-----------PIVIHTDKASSE-VLYPNYQNCWSLQER 1104
R L S LAGLF EG PI +HT S + +LY +++C +E
Sbjct: 316 DRTLMSAMTNLAGLF--PPEGISIWNPSLPWQPIPVHTLSLSEDRLLYLPFRDCPRFKEL 373
Query: 1105 TRGRKQAAALQPGI---SEDLETVKEGMGIASGDRVD-FLILFDNVAAEAVH 1248
T ++ Q + + +ET+ G + D + ++D + E+VH
Sbjct: 374 TEETLKSEEFQKRLHPYKDFIETLPTLTGYHTQDLFGMWTKVYDPLFCESVH 425
>ref|XP_541473.2| PREDICTED: similar to testicular acid phosphatase isoform a precursor
[Canis familiaris].
Length = 427
Score = 60.1 bits (144), Expect = 4e-09
Identities = 60/197 (30%), Positives = 78/197 (39%), Gaps = 16/197 (8%)
Frame = +1
Query: 595 QSLLE--LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKP 768
Q+L E L V VVFRHG R+PL P + P
Sbjct: 26 QALTEGPLVFVAVVFRHGDRAPLASYPTD------------------------------P 55
Query: 769 HSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIR 948
H + L GQLT G++Q LG LR +Y FLSP + EV++R
Sbjct: 56 HKEAITALWPRGL------GQLTTEGVRQQLELGRFLRSRY---EAFLSPEYRREEVYVR 106
Query: 949 STNIYRNLESTRCLLAGLFQRQKEG-------PIVIHTDKASSEVLY-------PNYQNC 1086
ST+ R LES + LAGLF G PI +HT + + L P Y
Sbjct: 107 STDFDRTLESAQANLAGLFPEAAPGRPEAAWRPIPVHTVPVTEDKLLRFPTRSCPRYHEL 166
Query: 1087 WSLQERTRGRKQAAALQ 1137
L+E T + AL+
Sbjct: 167 --LREATEATEYQTALE 181
>ref|XP_861048.1| PREDICTED: similar to Lysosomal acid phosphatase precursor (LAP)
isoform 3 [Canis familiaris].
Length = 396
Score = 54.7 bits (130), Expect = 2e-07
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 16/229 (6%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L+ V +++RHG RSP+K P++
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDP------------------------------------- 55
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
YQ+ G GQLTK GM Q + LG+ LR++Y FL+ +++ EV++RST+ R
Sbjct: 56 YQEDEWPQGF--GQLTKEGMLQHWELGQALRQRY---HGFLNTSYHRQEVYVRSTDFDRT 110
Query: 970 LESTRCLLAGLF-----QRQKEG----PIVIHTDKASSEVLY-------PNYQNCWSLQE 1101
L S LAGLF QR PI +HT + + L P Y+ LQ
Sbjct: 111 LMSAEANLAGLFPPNGMQRFNPNISWQPIPVHTVPITEDRLLKFPLGPCPRYE---QLQN 167
Query: 1102 RTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEAVH 1248
TR + ++ L+ V G+ ++D + E H
Sbjct: 168 ETRQTPEYQNESVQNAQFLDMVANETGLTDVTLETVWNVYDTLFCEQTH 216
>ref|XP_850233.1| PREDICTED: similar to Lysosomal acid phosphatase precursor (LAP)
isoform 2 [Canis familiaris].
Length = 423
Score = 54.7 bits (130), Expect = 2e-07
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 16/229 (6%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L+ V +++RHG RSP+K P++
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDP------------------------------------- 55
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
YQ+ G GQLTK GM Q + LG+ LR++Y FL+ +++ EV++RST+ R
Sbjct: 56 YQEDEWPQGF--GQLTKEGMLQHWELGQALRQRY---HGFLNTSYHRQEVYVRSTDFDRT 110
Query: 970 LESTRCLLAGLF-----QRQKEG----PIVIHTDKASSEVLY-------PNYQNCWSLQE 1101
L S LAGLF QR PI +HT + + L P Y+ LQ
Sbjct: 111 LMSAEANLAGLFPPNGMQRFNPNISWQPIPVHTVPITEDRLLKFPLGPCPRYE---QLQN 167
Query: 1102 RTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEAVH 1248
TR + ++ L+ V G+ ++D + E H
Sbjct: 168 ETRQTPEYQNESVQNAQFLDMVANETGLTDVTLETVWNVYDTLFCEQTH 216
>ref|XP_533190.2| PREDICTED: similar to Lysosomal acid phosphatase precursor (LAP)
isoform 1 [Canis familiaris].
Length = 223
Score = 53.9 bits (128), Expect = 3e-07
Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 16/183 (8%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L+ V +++RHG RSP+K P++
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDP------------------------------------- 55
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
YQ+ G GQLTK GM Q + LG+ LR++Y FL+ +++ EV++RST+ R
Sbjct: 56 YQEDEWPQGF--GQLTKEGMLQHWELGQALRQRY---HGFLNTSYHRQEVYVRSTDFDRT 110
Query: 970 LESTRCLLAGLF-----QRQKEG----PIVIHTDKASSEVLY-------PNYQNCWSLQE 1101
L S LAGLF QR PI +HT + + L P Y+ LQ
Sbjct: 111 LMSAEANLAGLFPPNGMQRFNPNISWQPIPVHTVPITEDRLLKFPLGPCPRYE---QLQN 167
Query: 1102 RTR 1110
TR
Sbjct: 168 ETR 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,829,359
Number of extensions: 1814029
Number of successful extensions: 8751
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8655
Number of HSP's successfully gapped: 6
Length of query: 416
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 311
Effective length of database: 15,374,224
Effective search space: 4781383664
Effective search space used: 4781383664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003257
(1250 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057445.3| lysophosphatidic acid phosphatase type 6 precur... 442 e-124
Alignment gi|NP_001127666.1| prostatic acid phosphatase isoform TM-PAP pr... 66 8e-11
Alignment gi|NP_001090.2| prostatic acid phosphatase isoform PAP precurso... 66 8e-11
Alignment gi|NP_149059.1| testicular acid phosphatase precursor [Homo sap... 63 7e-10
Alignment gi|NP_001601.1| lysosomal acid phosphatase isoform 1 precursor ... 55 1e-07
Alignment gi|NP_001124536.1| lysosomal acid phosphatase isoform 2 [Homo s... 54 3e-07
>ref|NP_057445.3| lysophosphatidic acid phosphatase type 6 precursor [Homo sapiens].
Length = 428
Score = 442 bits (1136), Expect = e-124
Identities = 215/262 (82%), Positives = 237/262 (90%)
Frame = +1
Query: 463 MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHG 642
MI+G+F +RLW PVGV TSL +CLHQRRVALAEL+ AD Q VD+SLL+LKMVQVVFRHG
Sbjct: 1 MITGVFSMRLWTPVGVLTSLAYCLHQRRVALAELQEADGQCPVDRSLLKLKMVQVVFRHG 60
Query: 643 ARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQYQKTTLKGGVF 822
ARSPLKPLP EEQVEW PQLLEVPPQTQFDYTVTNLAGGPKP+SP+DSQY +TTLKGG+F
Sbjct: 61 ARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTVTNLAGGPKPYSPYDSQYHETTLKGGMF 120
Query: 823 AGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGL 1002
AGQLTKVGMQQMFALGERLRK YVED PFLSPTFNP EVFIRSTNI+RNLESTRCLLAGL
Sbjct: 121 AGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFRNLESTRCLLAGL 180
Query: 1003 FQRQKEGPIVIHTDKASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMG 1182
FQ QKEGPI+IHTD+A SEVLYPNYQ+CWSL++RTRGR+Q A+LQPGISEDL+ VK+ MG
Sbjct: 181 FQCQKEGPIIIHTDEADSEVLYPNYQSCWSLRQRTRGRRQTASLQPGISEDLKKVKDRMG 240
Query: 1183 IASGDRVDFLILFDNVAAEAVH 1248
I S D+VDF IL DNVAAE H
Sbjct: 241 IDSSDKVDFFILLDNVAAEQAH 262
>ref|NP_001127666.1| prostatic acid phosphatase isoform TM-PAP precursor [Homo sapiens].
Length = 418
Score = 65.9 bits (159), Expect = 8e-11
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Frame = +1
Query: 589 VDQSLL--ELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGP 762
+D+S+L ELK V +VFRHG RSP+ P + P
Sbjct: 26 LDRSVLAKELKFVTLVFRHGDRSPIDTFPTD----------------------------P 57
Query: 763 KPHSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVF 942
S + + GQLT++GM+Q + LGE +RK+Y FL+ ++ +V+
Sbjct: 58 IKESSWPQGF-----------GQLTQLGMEQHYELGEYIRKRY---RKFLNESYKHEQVY 103
Query: 943 IRSTNIYRNLESTRCLLAGLFQRQKEG---------PIVIHTDKAS-SEVLYPNYQNCWS 1092
IRST++ R L S LA LF + PI +HT S ++LY ++NC
Sbjct: 104 IRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPR 163
Query: 1093 LQE 1101
QE
Sbjct: 164 FQE 166
>ref|NP_001090.2| prostatic acid phosphatase isoform PAP precursor [Homo sapiens].
Length = 386
Score = 65.9 bits (159), Expect = 8e-11
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Frame = +1
Query: 589 VDQSLL--ELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGP 762
+D+S+L ELK V +VFRHG RSP+ P + P
Sbjct: 26 LDRSVLAKELKFVTLVFRHGDRSPIDTFPTD----------------------------P 57
Query: 763 KPHSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVF 942
S + + GQLT++GM+Q + LGE +RK+Y FL+ ++ +V+
Sbjct: 58 IKESSWPQGF-----------GQLTQLGMEQHYELGEYIRKRY---RKFLNESYKHEQVY 103
Query: 943 IRSTNIYRNLESTRCLLAGLFQRQKEG---------PIVIHTDKAS-SEVLYPNYQNCWS 1092
IRST++ R L S LA LF + PI +HT S ++LY ++NC
Sbjct: 104 IRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPR 163
Query: 1093 LQE 1101
QE
Sbjct: 164 FQE 166
>ref|NP_149059.1| testicular acid phosphatase precursor [Homo sapiens].
Length = 426
Score = 62.8 bits (151), Expect = 7e-10
Identities = 58/187 (31%), Positives = 75/187 (40%), Gaps = 8/187 (4%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L V +VFRHG R+PL P + PH S
Sbjct: 32 LVFVALVFRHGDRAPLASYPMD------------------------------PHKEVAST 61
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
L GQLT G++Q LG LR +Y FLSP + EV+IRST+ R
Sbjct: 62 LWPRGL------GQLTTEGVRQQLELGRFLRSRY---EAFLSPEYRREEVYIRSTDFDRT 112
Query: 970 LESTRCLLAGLFQRQKEG-------PIVIHT-DKASSEVLYPNYQNCWSLQERTRGRKQA 1125
LES + LAGLF G PI +HT A ++L ++C E R +A
Sbjct: 113 LESAQANLAGLFPEAAPGSPEARWRPIPVHTVPVAEDKLLRFPMRSCPRYHELLREATEA 172
Query: 1126 AALQPGI 1146
A Q +
Sbjct: 173 AEYQEAL 179
>ref|NP_001601.1| lysosomal acid phosphatase isoform 1 precursor [Homo sapiens].
Length = 423
Score = 55.1 bits (131), Expect = 1e-07
Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 18/231 (7%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQE--EQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFD 783
L+ V +++RHG RSP+K P++ ++ EW PQ
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDPYQEEEW--------PQG-------------------- 64
Query: 784 SQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIY 963
GQLTK GM Q + LG+ LR++Y FL+ +++ EV++RST+
Sbjct: 65 -------------FGQLTKEGMLQHWELGQALRQRY---HGFLNTSYHRQEVYVRSTDFD 108
Query: 964 RNLESTRCLLAGLF-----QRQKEG----PIVIHTDKASSEVLY-------PNYQNCWSL 1095
R L S LAGLF QR PI +HT + + L P Y+ L
Sbjct: 109 RTLMSAEANLAGLFPPNGMQRFNPNISWQPIPVHTVPITEDRLLKFPLGPCPRYE---QL 165
Query: 1096 QERTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEAVH 1248
Q TR + ++ L+ V G+ ++D + E H
Sbjct: 166 QNETRQTPEYQNESSRNAQFLDMVANETGLTDLTLETVWNVYDTLFCEQTH 216
>ref|NP_001124536.1| lysosomal acid phosphatase isoform 2 [Homo sapiens].
Length = 160
Score = 53.9 bits (128), Expect = 3e-07
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQE--EQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFD 783
L+ V +++RHG RSP+K P++ ++ EW PQ
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDPYQEEEW--------PQG-------------------- 64
Query: 784 SQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIY 963
GQLTK GM Q + LG+ LR++Y FL+ +++ EV++RST+
Sbjct: 65 -------------FGQLTKEGMLQHWELGQALRQRY---HGFLNTSYHRQEVYVRSTDFD 108
Query: 964 RNLESTRCLLAGLF 1005
R L S LAGLF
Sbjct: 109 RTLMSAEANLAGLF 122
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,584,648
Number of extensions: 1768922
Number of successful extensions: 8626
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8542
Number of HSP's successfully gapped: 6
Length of query: 416
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,835,944
Effective search space: 4613978584
Effective search space used: 4613978584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003257
(1250 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062774.2| lysophosphatidic acid phosphatase type 6 precur... 406 e-113
Alignment gi|XP_003084746.1| PREDICTED: testicular acid phosphatase-like ... 65 8e-11
Alignment gi|XP_003086645.1| PREDICTED: testicular acid phosphatase-like ... 65 8e-11
Alignment gi|NP_001181963.1| testicular acid phosphatase [Mus musculus]. 65 8e-11
Alignment gi|NP_062781.2| prostatic acid phosphatase isoform 2 precursor ... 58 2e-08
Alignment gi|NP_997551.1| prostatic acid phosphatase isoform 1 precursor ... 58 2e-08
Alignment gi|NP_031413.1| lysosomal acid phosphatase precursor [Mus muscu... 54 2e-07
>ref|NP_062774.2| lysophosphatidic acid phosphatase type 6 precursor [Mus musculus].
Length = 418
Score = 406 bits (1044), Expect = e-113
Identities = 197/255 (77%), Positives = 224/255 (87%)
Frame = +1
Query: 484 VRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHGARSPLKP 663
+R+W PVGV TSL +C HQRRVALAE R + Q+ VD++LLELKMVQVVFRHGARSPLKP
Sbjct: 1 MRVWVPVGVLTSLAYCFHQRRVALAEQRAPNGQRPVDRNLLELKMVQVVFRHGARSPLKP 60
Query: 664 LPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQYQKTTLKGGVFAGQLTKV 843
LP EEQVEW P+LLE+PPQT+FDYTVTNLAGGPKPHS +D++Y+KTTL+GGV AGQLTKV
Sbjct: 61 LPLEEQVEWNPKLLEIPPQTRFDYTVTNLAGGPKPHSHYDTEYRKTTLRGGVLAGQLTKV 120
Query: 844 GMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGLFQRQKEG 1023
GMQQMFALGE+LRK YVED PFLSP +NP EVFIRSTN++RNLESTRCLLAGLFQ QK G
Sbjct: 121 GMQQMFALGEKLRKNYVEDIPFLSPVYNPQEVFIRSTNMFRNLESTRCLLAGLFQHQK-G 179
Query: 1024 PIVIHTDKASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMGIASGDRV 1203
VIHTD+ASSEVLYPNYQ+CW L+E+TRGRK+AA QPGISEDLE VK G+GI +GD V
Sbjct: 180 SAVIHTDEASSEVLYPNYQSCWVLKEKTRGRKKAAISQPGISEDLEKVKTGVGINNGDDV 239
Query: 1204 DFLILFDNVAAEAVH 1248
DF +L DNVAAE VH
Sbjct: 240 DFFVLLDNVAAEQVH 254
>ref|XP_003084746.1| PREDICTED: testicular acid phosphatase-like [Mus musculus].
Length = 425
Score = 65.5 bits (158), Expect = 8e-11
Identities = 60/188 (31%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L V +VFRHG R+PL P + PH S
Sbjct: 31 LLFVALVFRHGDRAPLASYPTD------------------------------PHKEAAST 60
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
L GQLTK G++Q LG LR++Y FLSP + EV+IRST+ R
Sbjct: 61 LWPRGL------GQLTKEGIRQQLELGRFLRRRY---KAFLSPEYKREEVYIRSTDFDRT 111
Query: 970 LESTRCLLAGLFQRQKEG-------PIVIHTDKASSEVL--YPNYQNCWSLQERTRGRKQ 1122
LES + LAGLF G PI +HT S + L +P ++C E R +
Sbjct: 112 LESAQANLAGLFPEAAPGSPETDWKPIPVHTVPVSEDKLLRFP-MRSCPRYHELLRESTE 170
Query: 1123 AAALQPGI 1146
AA Q +
Sbjct: 171 AADYQEAL 178
>ref|XP_003086645.1| PREDICTED: testicular acid phosphatase-like [Mus musculus].
Length = 425
Score = 65.5 bits (158), Expect = 8e-11
Identities = 60/188 (31%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L V +VFRHG R+PL P + PH S
Sbjct: 31 LLFVALVFRHGDRAPLASYPTD------------------------------PHKEAAST 60
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
L GQLTK G++Q LG LR++Y FLSP + EV+IRST+ R
Sbjct: 61 LWPRGL------GQLTKEGIRQQLELGRFLRRRY---KAFLSPEYKREEVYIRSTDFDRT 111
Query: 970 LESTRCLLAGLFQRQKEG-------PIVIHTDKASSEVL--YPNYQNCWSLQERTRGRKQ 1122
LES + LAGLF G PI +HT S + L +P ++C E R +
Sbjct: 112 LESAQANLAGLFPEAAPGSPETDWKPIPVHTVPVSEDKLLRFP-MRSCPRYHELLRESTE 170
Query: 1123 AAALQPGI 1146
AA Q +
Sbjct: 171 AADYQEAL 178
>ref|NP_001181963.1| testicular acid phosphatase [Mus musculus].
Length = 425
Score = 65.5 bits (158), Expect = 8e-11
Identities = 60/188 (31%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L V +VFRHG R+PL P + PH S
Sbjct: 31 LLFVALVFRHGDRAPLASYPTD------------------------------PHKEAAST 60
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
L GQLTK G++Q LG LR++Y FLSP + EV+IRST+ R
Sbjct: 61 LWPRGL------GQLTKEGIRQQLELGRFLRRRY---KAFLSPEYKREEVYIRSTDFDRT 111
Query: 970 LESTRCLLAGLFQRQKEG-------PIVIHTDKASSEVL--YPNYQNCWSLQERTRGRKQ 1122
LES + LAGLF G PI +HT S + L +P ++C E R +
Sbjct: 112 LESAQANLAGLFPEAAPGSPETDWKPIPVHTVPVSEDKLLRFP-MRSCPRYHELLRESTE 170
Query: 1123 AAALQPGI 1146
AA Q +
Sbjct: 171 AADYQEAL 178
>ref|NP_062781.2| prostatic acid phosphatase isoform 2 precursor [Mus musculus].
Length = 381
Score = 57.8 bits (138), Expect = 2e-08
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Frame = +1
Query: 607 ELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDS 786
ELK V +VFRHG R P++ P + P S +
Sbjct: 33 ELKFVTLVFRHGDRGPIETFPTD----------------------------PITESSWPQ 64
Query: 787 QYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYR 966
+ GQLT+ GM+Q + LG +RK+Y FL+ T+ +++IRST++ R
Sbjct: 65 GF-----------GQLTQWGMEQHYELGSYIRKRYGR---FLNDTYKHDQIYIRSTDVDR 110
Query: 967 NLESTRCLLAGLF---------QRQKEGPIVIHTDKASSE-VLYPNYQNCWSLQE 1101
L S LA LF R PI +HT S + +LY +++C +E
Sbjct: 111 TLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFEE 165
>ref|NP_997551.1| prostatic acid phosphatase isoform 1 precursor [Mus musculus].
Length = 417
Score = 57.8 bits (138), Expect = 2e-08
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Frame = +1
Query: 607 ELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDS 786
ELK V +VFRHG R P++ P + P S +
Sbjct: 33 ELKFVTLVFRHGDRGPIETFPTD----------------------------PITESSWPQ 64
Query: 787 QYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYR 966
+ GQLT+ GM+Q + LG +RK+Y FL+ T+ +++IRST++ R
Sbjct: 65 GF-----------GQLTQWGMEQHYELGSYIRKRYGR---FLNDTYKHDQIYIRSTDVDR 110
Query: 967 NLESTRCLLAGLF---------QRQKEGPIVIHTDKASSE-VLYPNYQNCWSLQE 1101
L S LA LF R PI +HT S + +LY +++C +E
Sbjct: 111 TLMSAMTNLAALFPPEGISIWNPRLLWQPIPVHTVSLSEDRLLYLPFRDCPRFEE 165
>ref|NP_031413.1| lysosomal acid phosphatase precursor [Mus musculus].
Length = 423
Score = 54.3 bits (129), Expect = 2e-07
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 16/229 (6%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L+ V +++RHG RSP+K P++
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDP------------------------------------- 55
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
YQ+ G GQLTK GM Q + LG+ LR++Y FL+ +++ EV++RST+ R
Sbjct: 56 YQEEKWPQGF--GQLTKEGMLQHWELGQALRQRY---HGFLNTSYHRQEVYVRSTDFDRT 110
Query: 970 LESTRCLLAGLFQRQKE---------GPIVIHTDKASSEVLY-------PNYQNCWSLQE 1101
L S LAGLF + PI +HT + + L P Y+ LQ
Sbjct: 111 LMSAEANLAGLFPPNEVQHFNPNISWQPIPVHTVPITEDRLLKFPLGPCPRYE---QLQN 167
Query: 1102 RTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEAVH 1248
TR + ++ L V G+ + ++D + E H
Sbjct: 168 ETRQTPEYQNRSIQNAQFLNMVANETGLTNVTLETIWNVYDTLFCEQTH 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,746,013
Number of extensions: 1457548
Number of successful extensions: 7091
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6998
Number of HSP's successfully gapped: 7
Length of query: 416
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 312
Effective length of database: 12,493,815
Effective search space: 3898070280
Effective search space used: 3898070280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003257
(1250 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928381.3| PREDICTED: lysophosphatidic acid phosphatase... 523 e-148
Alignment gi|XP_003356059.1| PREDICTED: testicular acid phosphatase [Sus ... 65 1e-10
Alignment gi|XP_003132467.2| PREDICTED: prostatic acid phosphatase, parti... 61 1e-09
Alignment gi|XP_003122860.1| PREDICTED: lysosomal acid phosphatase-like i... 54 1e-07
Alignment gi|XP_003361177.1| PREDICTED: lysosomal acid phosphatase-like [... 52 7e-07
>ref|XP_001928381.3| PREDICTED: lysophosphatidic acid phosphatase type 6 isoform 1 [Sus
scrofa].
Length = 428
Score = 523 bits (1346), Expect = e-148
Identities = 259/262 (98%), Positives = 260/262 (99%)
Frame = +1
Query: 463 MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHG 642
MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHG
Sbjct: 1 MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHG 60
Query: 643 ARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQYQKTTLKGGVF 822
ARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNL GGPKPHSPFDSQYQKTTLKGGVF
Sbjct: 61 ARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLVGGPKPHSPFDSQYQKTTLKGGVF 120
Query: 823 AGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGL 1002
AGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGL
Sbjct: 121 AGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGL 180
Query: 1003 FQRQKEGPIVIHTDKASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMG 1182
FQRQKEGPIVIHTD+ASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMG
Sbjct: 181 FQRQKEGPIVIHTDEASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMG 240
Query: 1183 IASGDRVDFLILFDNVAAEAVH 1248
IASGDRVDFLILFDNVAAE VH
Sbjct: 241 IASGDRVDFLILFDNVAAEQVH 262
>ref|XP_003356059.1| PREDICTED: testicular acid phosphatase [Sus scrofa].
Length = 445
Score = 64.7 bits (156), Expect = 1e-10
Identities = 64/197 (32%), Positives = 83/197 (42%), Gaps = 16/197 (8%)
Frame = +1
Query: 595 QSLLE--LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKP 768
Q+L E L V VVFRHG R+PL P + E N+A
Sbjct: 44 QALTEGPLVFVAVVFRHGDRAPLASYPTDPHKE-------------------NIA----- 79
Query: 769 HSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIR 948
T G+ GQLT+ G+ Q LG LR +Y FLSP + EV+IR
Sbjct: 80 ----------TLWPRGL--GQLTREGVHQQLELGRFLRSRYES---FLSPQYRREEVYIR 124
Query: 949 STNIYRNLESTRCLLAGLFQRQKEG-------PIVIHTDKASSEVLY-------PNYQNC 1086
ST+ R LES + LAGLF G PI +HT + + L P Y+
Sbjct: 125 STDFDRTLESAQANLAGLFPEASPGRSEATWQPIPVHTVPVTEDKLLRFPTRSCPRYREL 184
Query: 1087 WSLQERTRGRKQAAALQ 1137
L+E T + AAL+
Sbjct: 185 --LREATEAAEYKAALE 199
>ref|XP_003132467.2| PREDICTED: prostatic acid phosphatase, partial [Sus scrofa].
Length = 236
Score = 61.2 bits (147), Expect = 1e-09
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 12/170 (7%)
Frame = +1
Query: 628 VFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQYQKTTL 807
VFRHG RSP++ P++ P S + +
Sbjct: 61 VFRHGDRSPIETFPKD----------------------------PIKESSWPQGF----- 87
Query: 808 KGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRC 987
GQLT++GM+Q + LGE +RK+Y + FL+ ++ +V++RST+I R L S
Sbjct: 88 ------GQLTQLGMEQHYELGEYIRKRYEK---FLNESYKHEQVYVRSTDIDRTLMSAMT 138
Query: 988 LLAGLFQRQKEG-----------PIVIHTDKAS-SEVLYPNYQNCWSLQE 1101
LAGLF EG PI +HT S ++LY ++NC QE
Sbjct: 139 NLAGLF--PPEGISIWNPNLLWQPIPVHTVPLSEDQLLYLPFRNCPRFQE 186
>ref|XP_003122860.1| PREDICTED: lysosomal acid phosphatase-like isoform 1 [Sus scrofa].
Length = 423
Score = 54.3 bits (129), Expect = 1e-07
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 16/229 (6%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L+ V +++RHG RSP+K P++
Sbjct: 33 LRFVTLLYRHGDRSPVKTYPKDP------------------------------------- 55
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
YQ+ G GQLTK GM Q + LG LR++Y+ FL+ +++ EV++RST+ R
Sbjct: 56 YQEDKWPQGF--GQLTKEGMLQHWELGRALRQRYLG---FLNTSYHRQEVYVRSTDFDRT 110
Query: 970 LESTRCLLAGLF-----QRQKEG----PIVIHTDKASSEVLY-------PNYQNCWSLQE 1101
L S LAGLF QR PI +HT + + L P ++ LQ
Sbjct: 111 LMSAEANLAGLFPPNGMQRFNPNISWQPIPVHTVPVTEDRLLKFPLGPCPRFE---QLQN 167
Query: 1102 RTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEAVH 1248
TR + ++ LE V G+ ++D + E H
Sbjct: 168 ETRRTPEYQNESIQNAQFLEMVANETGLTDLTLETVWNVYDTLFCEQTH 216
>ref|XP_003361177.1| PREDICTED: lysosomal acid phosphatase-like [Sus scrofa].
Length = 452
Score = 52.0 bits (123), Expect = 7e-07
Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 16/229 (6%)
Frame = +1
Query: 610 LKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLAGGPKPHSPFDSQ 789
L+ +++RHG RSP+K P++
Sbjct: 35 LRFETLLYRHGDRSPVKTYPKDP------------------------------------- 57
Query: 790 YQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRN 969
YQ+ G GQLTK GM Q + LG LR++Y+ FL+ +++ EV++RST+ R
Sbjct: 58 YQEDKWPQGF--GQLTKEGMLQHWELGRALRQRYLG---FLNTSYHRQEVYVRSTDFDRT 112
Query: 970 LESTRCLLAGLF-----QRQKEG----PIVIHTDKASSEVLY-------PNYQNCWSLQE 1101
L S LAGLF QR PI +HT + + L P ++ LQ
Sbjct: 113 LMSAEANLAGLFPPNGMQRFNPNISWQPIPVHTVPVTEDRLLKFPLGPCPRFE---QLQN 169
Query: 1102 RTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEAVH 1248
TR + ++ LE V G+ ++D + E H
Sbjct: 170 ETRRTPEYQNESIQNAQFLEMVANETGLTDLTLETVWNVYDTLFCEQTH 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,155,450
Number of extensions: 1140596
Number of successful extensions: 5879
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5822
Number of HSP's successfully gapped: 5
Length of query: 416
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,829,335
Effective search space: 2781240525
Effective search space used: 2781240525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003257
(1250 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1356 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1356 bits (684), Expect = 0.0
Identities = 684/684 (100%)
Strand = Plus / Plus
Query: 1 gtgctcctcggcgcgggtccacttggggcaggttcctgagtgggtgagataacgagtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109763772 gtgctcctcggcgcgggtccacttggggcaggttcctgagtgggtgagataacgagtgga 109763831
Query: 61 agcttatagaaaagtggagtcactgcagtcgaggaactcacggctggttcctgtcattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109763832 agcttatagaaaagtggagtcactgcagtcgaggaactcacggctggttcctgtcattta 109763891
Query: 121 aagaatactagacgccaaacttgcaatacaagtttaagggcgaaagatgagctaagctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109763892 aagaatactagacgccaaacttgcaatacaagtttaagggcgaaagatgagctaagctcc 109763951
Query: 181 cgcctgtccattttgcggcagcagcggccaagcccgacccgggttaaaattcccggggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109763952 cgcctgtccattttgcggcagcagcggccaagcccgacccgggttaaaattcccggggag 109764011
Query: 241 tcttcgctgctcacagctcctcttcttactccactctcccactcggggtccccttcaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109764012 tcttcgctgctcacagctcctcttcttactccactctcccactcggggtccccttcaggg 109764071
Query: 301 ctgggagtctcagcggtctcagattggtgtcgggggtgggcggatgtgctctcccgccga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109764072 ctgggagtctcagcggtctcagattggtgtcgggggtgggcggatgtgctctcccgccga 109764131
Query: 361 ctcccgggaacttgggggaggccgctgagccccgtcgcccgcggaagacttgcgttcgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109764132 ctcccgggaacttgggggaggccgctgagccccgtcgcccgcggaagacttgcgttcgct 109764191
Query: 421 ttctgcaccctcacccgggagggcaacccaggggattccaccatgatctccggtctcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109764192 ttctgcaccctcacccgggagggcaacccaggggattccaccatgatctccggtctcttc 109764251
Query: 481 agggtgcgcctgtgggccccagtgggcgtcttcacgtcgctggtacattgtctccaccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109764252 agggtgcgcctgtgggccccagtgggcgtcttcacgtcgctggtacattgtctccaccag 109764311
Query: 541 cggcgggtggccctggccgagctgcggggggcggacgaccaaaaggcagtcgaccaaagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109764312 cggcgggtggccctggccgagctgcggggggcggacgaccaaaaggcagtcgaccaaagc 109764371
Query: 601 ttgctggagctgaaaatggtgcaagtcgtgtttcgacacggggcgcggagtcctctcaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109764372 ttgctggagctgaaaatggtgcaagtcgtgtttcgacacggggcgcggagtcctctcaag 109764431
Query: 661 ccgctcccgcaggaggagcaggtg 684
||||||||||||||||||||||||
Sbjct: 109764432 ccgctcccgcaggaggagcaggtg 109764455
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 809 aggggggcgtgtttgctggacagctgaccaaggtgggcatgcagcagatgtttgccctgg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109770479 aggggggcgtgtttgctggacagctgaccaaggtgggcatgcagcagatgtttgccctgg 109770538
Query: 869 gagagaggctgaggaagaaatacgtggaggacaccccctttctttcgccaaccttcaacc 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109770539 gagagaggctgaggaagaaatacgtggaggacaccccctttctttcgccaaccttcaacc 109770598
Query: 929 cagtggaggtctt 941
|||||||||||||
Sbjct: 109770599 cagtggaggtctt 109770611
Score = 256 bits (129), Expect = 3e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 679 caggtggagtggaagccccagctattagaggtcccaccccaaactcagtttgattacaca 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109770231 caggtggagtggaagccccagctattagaggtcccaccccaaactcagtttgattacaca 109770290
Query: 739 gtcaccaatctagcaggtggcccaaaaccacattctcctttcgactctcaataccagaag 798
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109770291 gtcaccaatctagtaggtggcccaaaaccacattctcctttcgactctcaataccagaag 109770350
Query: 799 accacactgaagg 811
|||||||||||||
Sbjct: 109770351 accacactgaagg 109770363
Score = 254 bits (128), Expect = 1e-64
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 1107 cagaggccggaagcaggctgctgccttgcagccaggaatctcagaagatttggagacagt 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109775032 cagaggccggaagcaggctgctgccttgcagccaggaatctcagaagatttggagacagt 109775091
Query: 1167 gaaagaagggatgggcattgccagtggtgatagagtggactttctcatcctctttgacaa 1226
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 109775092 gaaagaagggatgggcattgccagtggtgatagagtggacttcctcatcctctttgacaa 109775151
Query: 1227 tgtggctgctga 1238
||||||||||||
Sbjct: 109775152 tgtggctgctga 109775163
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1020 agggcccatcgtcatccacaccgacaaagcaagctctgaagtcttgtaccccaactacca 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 109774173 agggcccatcgtcatccacaccgacgaagcaagctctgaagtcttgtaccccaactacca 109774232
Query: 1080 aaactgctggagcctgcaggaaagaaccag 1109
||||||||||||||||||||||||||||||
Sbjct: 109774233 aaactgctggagcctgcaggaaagaaccag 109774262
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 942 cattcgttccactaacatatatcggaacctggagtctacccggtgtttgctggctgggct 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109770964 cattcgttccactaacatatatcggaacctggagtctacccggtgtttgctggctgggct 109771023
Query: 1002 tttccaacgtcagaaagaagg 1022
|||||||||||||||||||||
Sbjct: 109771024 tttccaacgtcagaaagaagg 109771044
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,504,659
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 6
Length of query: 1250
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1229
Effective length of database: 2,808,413,156
Effective search space: 3451539768724
Effective search space used: 3451539768724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)