Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003258
(1180 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851349.1| secretogranin-1 [Bos taurus]. 233 2e-61
>ref|NP_851349.1| secretogranin-1 [Bos taurus].
Length = 646
Score = 233 bits (594), Expect = 2e-61
Identities = 149/300 (49%), Positives = 160/300 (53%), Gaps = 1/300 (0%)
Frame = +3
Query: 198 MQPAVLLGFLGATVVAAVSSMPVDNRNHNEEMVAHCIIEVLSNALSKSNAPPITPECRQV 377
MQPA LLG LGATVVAAVSSMPVD RNHNEE+V HCIIEVLSNAL KS+APPITPECRQV
Sbjct: 1 MQPAALLGLLGATVVAAVSSMPVDIRNHNEEVVTHCIIEVLSNALLKSSAPPITPECRQV 60
Query: 378 LXXXXXXXXXXXXXANENTRFEVRLLRDPADTSETQRPSGGREGAEAPSEDTQGPPGADV 557
L NENTRFEVRLLRDPADTSE S + E D Q P AD
Sbjct: 61 LKKNGKELKDEEKSENENTRFEVRLLRDPADTSEAPGLSSREDSGEG---DAQVPTVADT 117
Query: 558 EGGGHSREGAGKPRGGPYSSDNPVAKGGKTRPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 737
E GGHSRE AG+P G + VAK KTR
Sbjct: 118 ESGGHSRERAGEPPG------SQVAKEAKTR---YSKSEGQNREEEMVKYQKRERGEVGS 168
Query: 738 XXHLQE-PGETQTAFLNQGNRATAKKKEEFESRYDAHSAGGPAKTHXXXXXXXXXXXXXX 914
L E PG+ Q AFLNQ N+ T KKEE SRYD SA G K+H
Sbjct: 169 EERLSEGPGKAQMAFLNQRNQ-TPAKKEELVSRYDTQSARGLEKSHSRERSSQESGEETK 227
Query: 915 XXDAXXXXXXXXXXXXXXXXXXXXDASLEVDKRRWRPRHHHGRSRPDIAPQEGSPPPRRE 1094
+ DAS EVDKRR RPRHHHGRSRPD + QEG+PP E
Sbjct: 228 SQENWPQELQRHPEGQEAPGESEEDASPEVDKRRSRPRHHHGRSRPDRSSQEGNPPLEEE 287
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,778,381
Number of extensions: 1587240
Number of successful extensions: 12287
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11973
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003258
(1180 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534354.2| PREDICTED: similar to Secretogranin-1 precursor... 250 2e-66
>ref|XP_534354.2| PREDICTED: similar to Secretogranin-1 precursor (Secretogranin I)
(SgI) (Chromogranin B) (CgB) [Canis familiaris].
Length = 668
Score = 250 bits (639), Expect = 2e-66
Identities = 149/297 (50%), Positives = 167/297 (56%), Gaps = 2/297 (0%)
Frame = +3
Query: 198 MQPAVLLGFLGATVVAAVSSMPVDNRNHNEEMVAHCIIEVLSNALSKSNAPPITPECRQV 377
MQPAV L LGA VVA VSS+PVDNRNHNEEMV CIIEVLSNALSKS+APPITPECRQV
Sbjct: 1 MQPAVFLCLLGAAVVA-VSSVPVDNRNHNEEMVTRCIIEVLSNALSKSSAPPITPECRQV 59
Query: 378 LXXXXXXXXXXXXXANENTRFEVRLLRDPADTSETQRPSGGREGAEAPSE-DTQGPPGAD 554
L NENTRFEVRLLRDP D S+ RPS GRE A P E TQGP AD
Sbjct: 60 LKKSRKEVKDEEKSENENTRFEVRLLRDPTDASDANRPS-GREEARPPGEGGTQGPTMAD 118
Query: 555 VEGGGHSREGAGKPRGGPYSSDNPVAKGGKTRPXXXXXXXXXXXXXXXXXXXXXXXXXXX 734
E GGHSREGA + +G Y D+ V+K KT
Sbjct: 119 TE-GGHSREGASESQGDLYLPDSQVSKEAKTHYSEKTEEEDRKEEEGEKYQKREHGRDGS 177
Query: 735 XXXHLQEPGETQTAFLNQGNRATAKKKEEFESRYDAHSAGGP-AKTHXXXXXXXXXXXXX 911
+L+EPGETQ AFLN+ N+A+AKKKEE +RY HSA P KTH
Sbjct: 178 EEKNLEEPGETQNAFLNKRNQASAKKKEELVARYGTHSASTPEEKTHSRERSSQESGEDT 237
Query: 912 XXXDAXXXXXXXXXXXXXXXXXXXXDASLEVDKRRWRPRHHHGRSRPDIAPQEGSPP 1082
+ D EVDKR W+PRHHHGR+RPD + QEG+PP
Sbjct: 238 RSQEEHPQESKSPVGSREESEESEEDTDPEVDKRHWKPRHHHGRTRPDRSSQEGTPP 294
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,898,953
Number of extensions: 1631258
Number of successful extensions: 12687
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12366
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003258
(1180 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001810.2| secretogranin-1 precursor [Homo sapiens]. 239 3e-63
>ref|NP_001810.2| secretogranin-1 precursor [Homo sapiens].
Length = 677
Score = 239 bits (611), Expect = 3e-63
Identities = 144/325 (44%), Positives = 170/325 (52%), Gaps = 5/325 (1%)
Frame = +3
Query: 198 MQPAVLLGFLGATVVAAVSSMPVDNRNHNEEMVAHCIIEVLSNALSKSNAPPITPECRQV 377
MQP +LL LGA +AAV+SMPVDNRNHNE MV CIIEVLSNALSKS+APPITPECRQV
Sbjct: 1 MQPTLLLSLLGAVGLAAVNSMPVDNRNHNEGMVTRCIIEVLSNALSKSSAPPITPECRQV 60
Query: 378 LXXXXXXXXXXXXXANENTRFEVRLLRDPADTSETQRPSGGREGAEAPSEDTQGPPGAD- 554
L NENT+FEVRLLRDPAD SE S E ED QGP AD
Sbjct: 61 LKTSRKDVKDKETTENENTKFEVRLLRDPADASEAHESSSRGEAGAPGEEDIQGPTKADT 120
Query: 555 ---VEGGGHSREGAGKPRGGPYSSDNPVAKGGKTRPXXXXXXXXXXXXXXXXXXXXXXXX 725
EGGGHSRE A +P+ Y SD+ V++ KTR
Sbjct: 121 EKWAEGGGHSRERADEPQWSLYPSDSQVSEEVKTRHSEKSQREDEEEEEGENYQKGERGE 180
Query: 726 XXXXXXHLQEPGETQTAFLNQGNRATAKKKEEFESRYDAHSAG-GPAKTHXXXXXXXXXX 902
HL+EPGETQ AFLN+ +A+A KKEE +R + H+AG KTH
Sbjct: 181 DSSEEKHLEEPGETQNAFLNERKQASAIKKEELVARSETHAAGHSQEKTHSREKSSQESG 240
Query: 903 XXXXXXDAXXXXXXXXXXXXXXXXXXXXDASLEVDKRRWRPRHHHGRSRPDIAPQEGSPP 1082
+ DA+ EVDKRR RPRHHHGRSRPD + Q GS P
Sbjct: 241 EETGSQENHPQESKGQPRSQEESEEGEEDATSEVDKRRTRPRHHHGRSRPDRSSQGGSLP 300
Query: 1083 PRREDTPARNLKNQCWAWPAPGERK 1157
+ P + + + GE++
Sbjct: 301 SEEKGHPQEESEESNVSMASLGEKR 325
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,591,549
Number of extensions: 1575364
Number of successful extensions: 11459
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11160
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003258
(1180 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031720.1| secretogranin-1 precursor [Mus musculus]. 176 4e-44
>ref|NP_031720.1| secretogranin-1 precursor [Mus musculus].
Length = 677
Score = 176 bits (445), Expect = 4e-44
Identities = 120/309 (38%), Positives = 144/309 (46%), Gaps = 15/309 (4%)
Frame = +3
Query: 198 MQPAVLLGFLGATVVAAVSSMPVDNRNHNEEMVAHCIIEVLSNALSKSNAPPITPECRQV 377
MQPA+LLG LGA +AAVSS PVDNR+HNEEMV CIIEVLSNALSKS+ P ITPECRQV
Sbjct: 1 MQPAMLLGLLGAAALAAVSSAPVDNRDHNEEMVTRCIIEVLSNALSKSSVPTITPECRQV 60
Query: 378 LXXXXXXXXXXXXXANENTRFEVRLLRDPADTSETQRPSGGREGAEAPSEDTQGPPGAD- 554
L N+N++FEVRLLRDPAD S T R + RE A AP ED+QG
Sbjct: 61 LKKSGKEVKGEEKGENQNSKFEVRLLRDPADASGT-RWASSREDAGAPVEDSQGQTKVGN 119
Query: 555 ---VEGGGHSREGAGKPRGGPYSSDNPVAKGGKTRPXXXXXXXXXXXXXXXXXXXXXXXX 725
EGGGHSREG S+ +
Sbjct: 120 EKWTEGGGHSREGVDDQESLRPSNQQASKEAKIYHSEERVGKEREKEEGKIYPMGEHRED 179
Query: 726 XXXXXXHLQEPGETQTAFLNQGNRATAKKKEEFESRYDAHSAGGPAKTHXXXXXXXXXXX 905
H+++ GE F N+ + A+AKKK+E +R DAHS KTH
Sbjct: 180 AGEEKKHIEDSGEKPNTFSNKRSEASAKKKDESVARADAHSMELEEKTHSREQSSQESGE 239
Query: 906 XXXXXD-----------AXXXXXXXXXXXXXXXXXXXXDASLEVDKRRWRPRHHHGRSRP 1052
+ D++ EV KR RPRHHHGRS
Sbjct: 240 ETRRQEKPQELTDQDQSQEESQEGEEGEEGEEGEEGEEDSASEVTKR--RPRHHHGRSGS 297
Query: 1053 DIAPQEGSP 1079
+ + EG P
Sbjct: 298 NKSSYEGHP 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,655,746
Number of extensions: 1281213
Number of successful extensions: 9268
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9007
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003258
(1180 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999246.2| secretogranin-1 precursor [Sus scrofa]. 410 e-115
Alignment gi|XP_003134291.2| PREDICTED: cardiolipin synthase [Sus scrofa]. 65 7e-11
>ref|NP_999246.2| secretogranin-1 precursor [Sus scrofa].
Length = 668
Score = 410 bits (1055), Expect = e-115
Identities = 216/320 (67%), Positives = 220/320 (68%)
Frame = +3
Query: 198 MQPAVLLGFLGATVVAAVSSMPVDNRNHNEEMVAHCIIEVLSNALSKSNAPPITPECRQV 377
MQPAVLLGFLGATVVAAVSSMPVDNRNHNEEMVAHCIIEVLSNALSKSNAPPITPECRQV
Sbjct: 1 MQPAVLLGFLGATVVAAVSSMPVDNRNHNEEMVAHCIIEVLSNALSKSNAPPITPECRQV 60
Query: 378 LXXXXXXXXXXXXXANENTRFEVRLLRDPADTSETQRPSGGREGAEAPSEDTQGPPGADV 557
L ANENTRFEVRLLRDPADTSETQRPSGGREGAEAPSEDTQGPPGADV
Sbjct: 61 LKKGGKEVKDEEKGANENTRFEVRLLRDPADTSETQRPSGGREGAEAPSEDTQGPPGADV 120
Query: 558 EGGGHSREGAGKPRGGPYSSDNPVAKGGKTRPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 737
EGGGHSREGAGKPRGGPYSSDN VAK GKTR
Sbjct: 121 EGGGHSREGAGKPRGGPYSSDNQVAKEGKTRHSEKSEGQDREEEEGEKYQKRERGEEGSE 180
Query: 738 XXHLQEPGETQTAFLNQGNRATAKKKEEFESRYDAHSAGGPAKTHXXXXXXXXXXXXXXX 917
HLQEPGETQTAFLNQGNRATAKKKEEFESRYDAHSAGGPAKTH
Sbjct: 181 ERHLQEPGETQTAFLNQGNRATAKKKEEFESRYDAHSAGGPAKTHSRERSSQESGEETGS 240
Query: 918 XDAXXXXXXXXXXXXXXXXXXXXDASLEVDKRRWRPRHHHGRSRPDIAPQEGSPPPRRED 1097
DA DASLEVDKRRWRPRHHHGRSRPD APQEGSPPP
Sbjct: 241 QDAAPGEPESPPEGQEAPEESQEDASLEVDKRRWRPRHHHGRSRPDRAPQEGSPPPEERG 300
Query: 1098 TPARNLKNQCWAWPAPGERK 1157
P + +PG ++
Sbjct: 301 HPREESEESVLGLASPGGQR 320
Score = 70.5 bits (171), Expect = 2e-12
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = +2
Query: 1058 SPSGRESSPEKRGHPREESEESMLGLASPGGKKTRHPTHYP 1180
+P PE+RGHPREESEES+LGLASPGG++TRHPTHYP
Sbjct: 288 APQEGSPPPEERGHPREESEESVLGLASPGGQRTRHPTHYP 328
>ref|XP_003134291.2| PREDICTED: cardiolipin synthase [Sus scrofa].
Length = 204
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/40 (77%), Positives = 31/40 (77%)
Frame = -3
Query: 122 MKILREGSPVSWFPRCXXXXXXXXXLKGELRPQGGEGRAP 3
MKILREGSPVSWFPRC LKGELRPQGGEGRAP
Sbjct: 1 MKILREGSPVSWFPRCGAVGAGLALLKGELRPQGGEGRAP 40
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,946,355
Number of extensions: 1029173
Number of successful extensions: 8286
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8009
Number of HSP's successfully gapped: 3
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003258
(1180 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1467 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1467 bits (740), Expect = 0.0
Identities = 783/796 (98%), Gaps = 1/796 (0%)
Strand = Plus / Plus
Query: 386 aggtggaaaagaggtcaaagatgaagagaaaggtgcaaatgagaacacaaggtttgaagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866038 aggtggaaaagaggtcaaagatgaagagaaaggtgcaaatgagaacacaaggtttgaagt 15866097
Query: 446 gagattgttaagagacccagctgacacctccgaaacccagaggccctccggtggtaggga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866098 gagattgttaagagacccagctgacacctccgaaacccagaggccctccggtggtaggga 15866157
Query: 506 gggcgcagaagccccatcggaggacacccaaggccccccaggggcggacgtagagggcgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866158 gggcgcagaagccccatcggaggacacccaaggccccccaggggcggacgtagagggcgg 15866217
Query: 566 agggcacagccgagagggggcaggcaagccccgagggggcccctactcctctgacaaccc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866218 cgggcacagccgagagggggcaggcaagccccgagggggcccctactcctctgacaacca 15866277
Query: 626 agtggccaagggaggcaagacacgcccttctgagaagagcgagggacaggacagggaaga 685
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15866278 agtggccaaggaaggcaagacacgccattctgagaagagcgagggacaggacagggaaga 15866337
Query: 686 agaagagggagagaaatatcagaaaagggagcgtggggaagagggcagcgaggagcgaca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866338 agaagagggagagaaatatcagaaaagggagcgtggggaagagggcagcgaggagcgaca 15866397
Query: 746 cctccaagagccgggagagacgcaaactgcttttctcaaccaaggaaaccgggctacagc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866398 cctccaagagccgggagagacgcaaactgcttttctcaaccaaggaaaccgggctacagc 15866457
Query: 806 taagaaaaaagaggagttcgagtccaggtacgatgcacactctgctgggggccctgcgaa 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866458 taagaaaaaagaggagttcgagtccaggtacgatgcacactctgctgggggccctgcgaa 15866517
Query: 866 gacacacagccgggaaaggagcagccaggagagtggagaggagaccgggagccaggacgc 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866518 gacacacagccgggaaaggagcagccaggagagtggagaggagaccgggagccaggacgc 15866577
Query: 926 ggcacccggagagcctgaaagcccacccgagggtcaggaggcacctgaagaaagccagga 985
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15866578 ggcacccggagagcctgaaagcccacccgagggtcaggaggcacctgaggaaagccagga 15866637
Query: 986 agatgccagccttgaggtggacaaacgacgctggaggccgaggcatcaccacgggaggag 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866638 agatgccagccttgaggtggacaaacgacgctggaggccgaggcatcaccacgggaggag 15866697
Query: 1046 caggccggacatagcccctcaggaagggagtcct-cccccgagaagagaggacacccccg 1104
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 15866698 caggccggacagagcccctcaggaagggagtcctccccccgaggagagaggacacccccg 15866757
Query: 1105 cgaggaatctgaagaatcaatgttgggcctggccagccccgggggaaagaaaacccgcca 1164
|||||||||||| || ||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct: 15866758 cgaggaatctgaggagtcagtgttgggcctggccagccccgggggacagagaacccgcca 15866817
Query: 1165 tcctacccactaccca 1180
||||||||||||||||
Sbjct: 15866818 tcctacccactaccca 15866833
Score = 480 bits (242), Expect = e-133
Identities = 245/246 (99%)
Strand = Plus / Plus
Query: 1 ctgggtgcccgcccctccccgccctgcggcctcagctcgccctttaaaagagcgagtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15800480 ctgggtgcccgcccctccccgccctgcggcctcagctcgccctttaaaagagcgagtcct 15800539
Query: 61 gcgccaaccgcgccacaccgcgggaaccaggacacagggctgccttccctgagtatcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15800540 gcgccaaccgcgccacaccgcgggaaccaggacacagggctgccttccctgagtatcttc 15800599
Query: 121 atcttgccttccgtccacgactcactcacctctcagcagccgtcctcttctccgcgcaga 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15800600 atcttgccttccgtccacgactcactcaccactcagcagccgtcctcttctccgcgcaga 15800659
Query: 181 ttcgggcgagccgggccatgcagccggcggtgcttctcggcttcctgggagctactgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15800660 ttcgggcgagccgggccatgcagccggcggtgcttctcggcttcctgggagctactgtgg 15800719
Query: 241 tggccg 246
||||||
Sbjct: 15800720 tggccg 15800725
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 293 ggtggctcactgcatcatcgaggtcctttcaaatgccctgtcgaagtccaatgctcctcc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15805894 ggtggctcactgcatcatcgaggtcctttcaaatgccctgtcgaagtccaatgctcctcc 15805953
Query: 353 catcactcctgagtgcagacaagtcctgaagaaaggt 389
|||||||||||||||||||||||||||||||||||||
Sbjct: 15805954 catcactcctgagtgcagacaagtcctgaagaaaggt 15805990
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 246 gctgtcagttctatgccagtggacaacaggaaccacaatgaagaaatggt 295
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15805407 gctgtcagttctatgccagtggacaacaggaaccacaatgaagaaatggt 15805456
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,056,141
Number of extensions: 405
Number of successful extensions: 405
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 4
Length of query: 1180
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1159
Effective length of database: 2,808,413,156
Effective search space: 3254950847804
Effective search space used: 3254950847804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)