Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003260
(1304 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068920.1| protein rogdi homolog [Bos taurus]. 527 e-150
>ref|NP_001068920.1| protein rogdi homolog [Bos taurus].
Length = 287
Score = 527 bits (1358), Expect = e-150
Identities = 262/269 (97%), Positives = 263/269 (97%)
Frame = +3
Query: 123 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 302
FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ
Sbjct: 19 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 78
Query: 303 GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDENYQFRT 482
GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDE+YQFRT
Sbjct: 79 GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDESYQFRT 138
Query: 483 GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNFYINLNK 662
GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAP LPSDLLVN YINLNK
Sbjct: 139 GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPTLPSDLLVNVYINLNK 198
Query: 663 LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGAQRLEVSHVHKVECVIPWLNDAL 842
LCLTVYQLH LQPNSTKNFRPAGGAVLHSPGAMFEWG QRLEVSHVHKVE VIPWLNDAL
Sbjct: 199 LCLTVYQLHTLQPNSTKNFRPAGGAVLHSPGAMFEWGTQRLEVSHVHKVESVIPWLNDAL 258
Query: 843 VFFTVSLQLCQQLKDKISVFSSYWSYRPF 929
VFFTVSLQLCQQLKDKISVFSSYWS RPF
Sbjct: 259 VFFTVSLQLCQQLKDKISVFSSYWSCRPF 287
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,726,440
Number of extensions: 1356578
Number of successful extensions: 7716
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7638
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,207,134
Effective search space: 4674147086
Effective search space used: 4674147086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003260
(1304 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536986.2| PREDICTED: similar to leucine zipper domain pro... 524 e-149
>ref|XP_536986.2| PREDICTED: similar to leucine zipper domain protein [Canis
familiaris].
Length = 289
Score = 524 bits (1349), Expect = e-149
Identities = 261/271 (96%), Positives = 265/271 (97%), Gaps = 2/271 (0%)
Frame = +3
Query: 123 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGT--EGPTKQENFILGSCGTDQVKGVLT 296
FRWLLHDEVHAVLRQLQDILKEASLRFTLP SGT EGP KQENFILGSC TDQVKGVLT
Sbjct: 19 FRWLLHDEVHAVLRQLQDILKEASLRFTLPSSGTATEGPAKQENFILGSCSTDQVKGVLT 78
Query: 297 LQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDENYQF 476
LQGDALSQADVNLK+PRNNQLLHFAFREDKQWKLQQIQDARNHVSQA+YLLANRDE+YQF
Sbjct: 79 LQGDALSQADVNLKIPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAMYLLANRDESYQF 138
Query: 477 RTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNFYINL 656
RTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVN YINL
Sbjct: 139 RTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNVYINL 198
Query: 657 NKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGAQRLEVSHVHKVECVIPWLND 836
NKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWG+QRLEVSHVHKVECVIPWLND
Sbjct: 199 NKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLND 258
Query: 837 ALVFFTVSLQLCQQLKDKISVFSSYWSYRPF 929
ALVFFTVSLQLCQQLKDKISVFSSYWSYRPF
Sbjct: 259 ALVFFTVSLQLCQQLKDKISVFSSYWSYRPF 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,248,339
Number of extensions: 1335672
Number of successful extensions: 7706
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7648
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 328
Effective length of database: 15,340,888
Effective search space: 5031811264
Effective search space used: 5031811264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003260
(1304 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078865.1| protein rogdi homolog [Homo sapiens]. 528 e-150
>ref|NP_078865.1| protein rogdi homolog [Homo sapiens].
Length = 287
Score = 528 bits (1360), Expect = e-150
Identities = 259/269 (96%), Positives = 266/269 (98%)
Frame = +3
Query: 123 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 302
FRWLLHDEVHAVL+QLQDILKEASLRFTLPGSGTEGP KQENFILGSCGTDQVKGVLTLQ
Sbjct: 19 FRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQENFILGSCGTDQVKGVLTLQ 78
Query: 303 GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDENYQFRT 482
GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLL +RD++YQF+T
Sbjct: 79 GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLTSRDQSYQFKT 138
Query: 483 GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNFYINLNK 662
GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVN YINLNK
Sbjct: 139 GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNVYINLNK 198
Query: 663 LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGAQRLEVSHVHKVECVIPWLNDAL 842
LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWG+QRLEVSHVHKVECVIPWLNDAL
Sbjct: 199 LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDAL 258
Query: 843 VFFTVSLQLCQQLKDKISVFSSYWSYRPF 929
V+FTVSLQLCQQLKDKISVFSSYWSYRPF
Sbjct: 259 VYFTVSLQLCQQLKDKISVFSSYWSYRPF 287
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,177,873
Number of extensions: 1285618
Number of successful extensions: 7462
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7392
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,835,944
Effective search space: 4881025576
Effective search space used: 4881025576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003260
(1304 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_573448.2| protein rogdi homolog [Mus musculus]. 512 e-145
>ref|NP_573448.2| protein rogdi homolog [Mus musculus].
Length = 287
Score = 512 bits (1319), Expect = e-145
Identities = 253/269 (94%), Positives = 259/269 (96%)
Frame = +3
Query: 123 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 302
FRWLLH EVHAVLRQLQDILKEASLRFTLPG TEGP KQENFILGSCGTDQVKG LTLQ
Sbjct: 19 FRWLLHAEVHAVLRQLQDILKEASLRFTLPGPSTEGPAKQENFILGSCGTDQVKGTLTLQ 78
Query: 303 GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDENYQFRT 482
GDALSQADVNLKMPRNNQLLH AFREDKQWKLQQIQDARNHVSQAIYLLANRDE+YQF+T
Sbjct: 79 GDALSQADVNLKMPRNNQLLHLAFREDKQWKLQQIQDARNHVSQAIYLLANRDESYQFKT 138
Query: 483 GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNFYINLNK 662
GAEVLKLMDAVMLQLTRAR+RLTTPATLTLPEIAASGLTRMFAP LPSDLLVN YINLNK
Sbjct: 139 GAEVLKLMDAVMLQLTRARSRLTTPATLTLPEIAASGLTRMFAPTLPSDLLVNVYINLNK 198
Query: 663 LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGAQRLEVSHVHKVECVIPWLNDAL 842
LCLTVYQLHALQP STKNFRPAGGAVLHSPGAMFEWG+QRLEVSHVHKVECVIPWLNDAL
Sbjct: 199 LCLTVYQLHALQPTSTKNFRPAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDAL 258
Query: 843 VFFTVSLQLCQQLKDKISVFSSYWSYRPF 929
V+FTVSLQLCQQLKDKI+VFSSYWS RPF
Sbjct: 259 VYFTVSLQLCQQLKDKIAVFSSYWSSRPF 287
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,830,525
Number of extensions: 1056596
Number of successful extensions: 5694
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5629
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 330
Effective length of database: 12,493,815
Effective search space: 4122958950
Effective search space used: 4122958950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003260
(1304 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124674.1| PREDICTED: protein rogdi homolog isoform 1 [... 544 e-155
Alignment gi|XP_003354670.1| PREDICTED: protein rogdi homolog isoform 2 [... 531 e-151
>ref|XP_003124674.1| PREDICTED: protein rogdi homolog isoform 1 [Sus scrofa].
Length = 287
Score = 544 bits (1401), Expect = e-155
Identities = 269/269 (100%), Positives = 269/269 (100%)
Frame = +3
Query: 123 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 302
FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ
Sbjct: 19 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 78
Query: 303 GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDENYQFRT 482
GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDENYQFRT
Sbjct: 79 GDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLANRDENYQFRT 138
Query: 483 GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNFYINLNK 662
GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNFYINLNK
Sbjct: 139 GAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNFYINLNK 198
Query: 663 LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGAQRLEVSHVHKVECVIPWLNDAL 842
LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGAQRLEVSHVHKVECVIPWLNDAL
Sbjct: 199 LCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGAQRLEVSHVHKVECVIPWLNDAL 258
Query: 843 VFFTVSLQLCQQLKDKISVFSSYWSYRPF 929
VFFTVSLQLCQQLKDKISVFSSYWSYRPF
Sbjct: 259 VFFTVSLQLCQQLKDKISVFSSYWSYRPF 287
>ref|XP_003354670.1| PREDICTED: protein rogdi homolog isoform 2 [Sus scrofa].
Length = 310
Score = 531 bits (1367), Expect = e-151
Identities = 269/292 (92%), Positives = 269/292 (92%), Gaps = 23/292 (7%)
Frame = +3
Query: 123 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 302
FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ
Sbjct: 19 FRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQVKGVLTLQ 78
Query: 303 GDALSQA-----------------------DVNLKMPRNNQLLHFAFREDKQWKLQQIQD 413
GDALSQA DVNLKMPRNNQLLHFAFREDKQWKLQQIQD
Sbjct: 79 GDALSQAVPLPGRWARRASLRPAYPALAHQDVNLKMPRNNQLLHFAFREDKQWKLQQIQD 138
Query: 414 ARNHVSQAIYLLANRDENYQFRTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASG 593
ARNHVSQAIYLLANRDENYQFRTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASG
Sbjct: 139 ARNHVSQAIYLLANRDENYQFRTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASG 198
Query: 594 LTRMFAPALPSDLLVNFYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWG 773
LTRMFAPALPSDLLVNFYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWG
Sbjct: 199 LTRMFAPALPSDLLVNFYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWG 258
Query: 774 AQRLEVSHVHKVECVIPWLNDALVFFTVSLQLCQQLKDKISVFSSYWSYRPF 929
AQRLEVSHVHKVECVIPWLNDALVFFTVSLQLCQQLKDKISVFSSYWSYRPF
Sbjct: 259 AQRLEVSHVHKVECVIPWLNDALVFFTVSLQLCQQLKDKISVFSSYWSYRPF 310
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,160,398
Number of extensions: 972433
Number of successful extensions: 5126
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5079
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 332
Effective length of database: 8,804,438
Effective search space: 2923073416
Effective search space used: 2923073416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003260
(1304 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 511 e-142
>Sscrofa_Chr03
|| Length = 144787322
Score = 511 bits (258), Expect = e-142
Identities = 298/312 (95%), Gaps = 2/312 (0%)
Strand = Plus / Plus
Query: 994 accgcctcagagtgccagccagagccagagctgtgcaccatgggctatttatttccctct 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38670604 accgcctcagagtgccagccagagccagagctgtgcaccatgggctatttatttccctct 38670663
Query: 1054 tcaccctgtcctgcctgtcacgtctgcatggatggacctgaactctgggacgaagggata 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38670664 tcaccctgtcctgcctgtcacgtctgcatggatggacctgaactctgggacgaagggata 38670723
Query: 1114 gtggcttgcggtttgttttggaatnnnnnnnnaggggtcaggaaggtggggctgtgaggt 1173
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 38670724 gtggcttgcggtttgttttggaatggggggggaggggtcaggaaggtggggctgtgaggt 38670783
Query: 1174 ggccgaagtcccagccctgccctccgcagaaggctggaacctttggactcagggtagggc 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38670784 ggccgaagtcccagccctgccctccgcagaaggctggaacctttggactcagggtagggc 38670843
Query: 1234 tggcccctctcccnntcctcccct-cctggggcagctgaggacgttgaggggagccacac 1292
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 38670844 tggccctcctccctc-cctcccctccctggggcagctgaggacgttgaggggagccacac 38670902
Query: 1293 acgccccgcccc 1304
||||||||||||
Sbjct: 38670903 acgccccgcccc 38670914
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 764 tgagtggggcgcacagcgtctggaggtgagccacgtgcacaaggtggagtgtgtgatccc 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38670082 tgagtggggcgcacagcgtctggaggtgagccacgtgcacaaggtggagtgtgtgatccc 38670141
Query: 824 ctggctcaatgacgccctggtcttcttcaccgtctccctgcagctctgccagcagctcaa 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38670142 ctggctcaatgacgccctggtcttcttcaccgtctccctgcagctctgccagcagctcaa 38670201
Query: 884 ggacaag 890
|||||||
Sbjct: 38670202 ggacaag 38670208
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 599 gcggatgttcgcccccgccctgccctcagacctgctggtcaatttctacatcaacctcaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38669698 gcggatgttcgcccccgccctgccctcagacctgctggtcaatttctacatcaacctcaa 38669757
Query: 659 caagctctgcctcaccgtgtaccagctgcacgccctgcagcccaactccaccaag 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38669758 caagctctgcctcaccgtgtaccagctgcacgccctgcagcccaactccaccaag 38669812
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 499 agctgatggacgcagtgatgctgcagctgaccagagcccgaaaccggctcaccaccccgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38669258 agctgatggacgcagtgatgctgcagctgaccagagcccgaaaccggctcaccaccccgg 38669317
Query: 559 ccaccctcactctgcctgagatcgctgccagcggcctcacg 599
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 38669318 ccaccctcactctgcctgagatcgctgccagcggcctcacg 38669358
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 402 cagatccaagatgccagaaaccatgtgagccaagccatttaccttctcgccaaccgggac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38667894 cagatccaagatgccagaaaccatgtgagccaagccatttaccttctcgccaaccgggac 38667953
Query: 462 gagaactaccagttcaggacaggagcagaggtcctcaag 500
|||||||||||||||||||||||||||||||||||||||
Sbjct: 38667954 gagaactaccagttcaggacaggagcagaggtcctcaag 38667992
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 184 aggaggcctctcttcgcttcactctgccgggctcaggcacggaggggcccacgaagcagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38665942 aggaggcctctcttcgcttcactctgccgggctcaggcacggaggggcccacgaagcagg 38666001
Query: 244 agaacttcatcctgggcagctgtgg 268
|||||||||||||||||||||||||
Sbjct: 38666002 agaacttcatcctgggcagctgtgg 38666026
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 323 ggacgtgaacctgaagatgcccaggaacaaccagctgctgcacttcgccttccgggagga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38667035 ggacgtgaacctgaagatgcccaggaacaaccagctgctgcacttcgccttccgggagga 38667094
Query: 383 caagcagtggaagctgcagcag 404
||||||||||||||||||||||
Sbjct: 38667095 caagcagtggaagctgcagcag 38667116
Score = 123 bits (62), Expect = 3e-25
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 121 agtttcgctggttattgcacgatgaggtgcacgctgtgctaaggcagctacaggacatcc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 38665220 agtttcgctggttattgcacgatgaggtgcacgccgtgctaaggcagctacaggacatcc 38665279
Query: 181 tcaagg 186
||||||
Sbjct: 38665280 tcaagg 38665285
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 889 agatctccgtgttctccagctactggagctacaggcccttctgagcggagcgcccaaga 947
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38670498 agatctccgtgttctccagctactggagctacaggcccttctgagcggagcgcccaaga 38670556
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 268 gcacagaccaggtgaagggcgtgctgacgctgcaaggggatgccctgagccaggcgg 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38666280 gcacagaccaggtgaagggcgtgctgacgctgcaaggggatgccctgagccaggcgg 38666336
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 712 agaacttccgcccggctggaggcgctgtgctccacagccccggggccatgtt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38669912 agaacttccgcccggctggaggcgctgtgctccacagccccggggccatgtt 38669963
Score = 91.7 bits (46), Expect = 9e-16
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 1 gtgttccgagcgacgagcgacaagcagaccgcgggcaggtgacggtcgct 50
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 38665031 gtgttccgagcgacgagcgacaagcacaccgcgggcaggtgacggtcgct 38665080
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,490,929
Number of extensions: 238
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 13
Length of query: 1304
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1283
Effective length of database: 2,808,413,156
Effective search space: 3603194079148
Effective search space used: 3603194079148
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)