Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003269
(1715 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069211.1| translation initiation factor eIF-2B subunit... 524 e-148
Alignment gi|NP_001029716.1| translation initiation factor eIF-2B subunit... 87 3e-17
Alignment gi|NP_001015593.1| translation initiation factor eIF-2B subunit... 84 5e-16
Alignment gi|NP_001039852.1| methylthioribose-1-phosphate isomerase [Bos ... 63 9e-10
>ref|NP_001069211.1| translation initiation factor eIF-2B subunit alpha [Bos taurus].
Length = 305
Score = 524 bits (1349), Expect = e-148
Identities = 270/305 (88%), Positives = 276/305 (90%)
Frame = +2
Query: 143 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLCXXX 322
MD+ ELIEYFKSQ+KEDPDMASAVAAIRTLLEYL+RD GETIQGLRANLTSAIETLC
Sbjct: 1 MDNTELIEYFKSQIKEDPDMASAVAAIRTLLEYLRRDTGETIQGLRANLTSAIETLCGVD 60
Query: 323 XXXXXXXXXELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK 502
ELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSR KIAD+CHTFIK
Sbjct: 61 SSVAVSSGGELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRNKIADLCHTFIK 120
Query: 503 DGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 682
DGARILTHAYS KKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD
Sbjct: 121 DGARILTHAYSRVVLRVLEAAVAAKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 180
Query: 683 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 862
AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP
Sbjct: 181 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240
Query: 863 LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 1042
LNQQDVPDKFKYKADTLKSVQ GQDL+EEHPWVDYT+PSLITLLFTDLGVLTPSAVSDEL
Sbjct: 241 LNQQDVPDKFKYKADTLKSVQTGQDLREEHPWVDYTSPSLITLLFTDLGVLTPSAVSDEL 300
Query: 1043 IKLYL 1057
IKLYL
Sbjct: 301 IKLYL 305
>ref|NP_001029716.1| translation initiation factor eIF-2B subunit delta [Bos taurus].
Length = 524
Score = 87.4 bits (215), Expect = 3e-17
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ + I +G IL + S ++F V + +S+P L K
Sbjct: 312 KIVLAAQAISRFAYKKISNGDVILVYGCSSLVSHILQEAWAKGRQFRVVVVDSRPRLEAK 371
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
++L VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 372 HTLRSLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 431
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKF---KYKADTLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + + L + Q L+ + D
Sbjct: 432 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLLCERGEHVALANWQNHSSLRLLNLVYD 491
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 492 VTPPELVDLVITELGMIPCSSV 513
>ref|NP_001015593.1| translation initiation factor eIF-2B subunit beta [Bos taurus].
Length = 351
Score = 83.6 bits (205), Expect = 5e-16
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 2/223 (0%)
Frame = +2
Query: 392 SDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXX 571
S Y++ + +IE L + + + IA I I+T +S
Sbjct: 124 SHYAQLQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLREAAR 183
Query: 572 XKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVEN 751
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ N
Sbjct: 184 -KRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 242
Query: 752 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG 931
G + GT+ +A+ AK + P V A FK FP N++D KF + L +
Sbjct: 243 GALRAVAGTHTLALAAKHHSTPLIVCAPMFKLSPQFP-NEEDSFHKFVAPEEVLPFTEGD 301
Query: 932 --QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 1054
+ + P DY P LITL +++G PS + + +LY
Sbjct: 302 ILEKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELY 344
>ref|NP_001039852.1| methylthioribose-1-phosphate isomerase [Bos taurus].
Length = 358
Score = 62.8 bits (151), Expect = 9e-10
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Frame = +2
Query: 593 YITESQPDLSGKKM-AKALCHLNVPVTVVLD--AAVGYIMEKVDLVIVGAEGVVENGGII 763
+ TE++P G ++ A L + +P T++ D AA + V V+VGA+ VV NG
Sbjct: 198 FCTETRPYNQGARLTAFELVYEQIPATLIADSMAAAAMAHQGVSAVVVGADRVVANGDTA 257
Query: 764 NKIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQQDVPDKFKYKADTLKSVQ-AGQD 937
NK+GT Q+A+ AK PFYV A S +RL + + ++ + + V+ A
Sbjct: 258 NKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLETGREIVIEERPDQELTDVNGVRIAAPG 317
Query: 938 LKEEHPWVDYTAPSLIT-LLFTDLGVLTPSAVSDEL 1042
+ +P D T LIT + T+LGV P + L
Sbjct: 318 IGVWNPAFDVTPHDLITGGIITELGVFAPEELQAAL 353
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,754,442
Number of extensions: 1620104
Number of successful extensions: 3923
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3920
Number of HSP's successfully gapped: 4
Length of query: 571
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 463
Effective length of database: 14,107,870
Effective search space: 6531943810
Effective search space used: 6531943810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003269
(1715 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534645.1| PREDICTED: similar to Translation initiation fa... 521 e-148
Alignment gi|XP_857908.1| PREDICTED: similar to Translation initiation fa... 491 e-139
Alignment gi|XP_532909.2| PREDICTED: similar to eukaryotic translation in... 89 1e-17
Alignment gi|XP_860673.1| PREDICTED: similar to eukaryotic translation in... 89 1e-17
Alignment gi|XP_860642.1| PREDICTED: similar to eukaryotic translation in... 89 1e-17
Alignment gi|XP_547911.2| PREDICTED: similar to Translation initiation fa... 83 9e-16
Alignment gi|XP_868103.1| PREDICTED: similar to Translation initiation fa... 67 7e-11
Alignment gi|XP_542030.1| PREDICTED: similar to CG11334-PB, isoform B [Ca... 61 3e-09
>ref|XP_534645.1| PREDICTED: similar to Translation initiation factor eIF-2B alpha
subunit (eIF-2B GDP-GTP exchange factor) isoform 1 [Canis
familiaris].
Length = 305
Score = 521 bits (1343), Expect = e-148
Identities = 269/305 (88%), Positives = 275/305 (90%)
Frame = +2
Query: 143 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLCXXX 322
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLE+LKRDKGETIQGLRANLTSAI TLC
Sbjct: 1 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIGTLCGVD 60
Query: 323 XXXXXXXXXELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK 502
+LFLRFISLTSLEYSDYSKCKKIMIERGE+FLRR SLSR KIAD+CHTFIK
Sbjct: 61 SSVAVSSGGKLFLRFISLTSLEYSDYSKCKKIMIERGELFLRRTSLSRNKIADLCHTFIK 120
Query: 503 DGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 682
DGARILTHAYS KKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD
Sbjct: 121 DGARILTHAYSRVVLRVLEAAVAAKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 180
Query: 683 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 862
AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP
Sbjct: 181 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240
Query: 863 LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 1042
LNQQDVPDKFKYKADTLK+VQ QDLKEEHPWVDYT+PSLITLLFTDLGVLTPSAVSDEL
Sbjct: 241 LNQQDVPDKFKYKADTLKTVQTEQDLKEEHPWVDYTSPSLITLLFTDLGVLTPSAVSDEL 300
Query: 1043 IKLYL 1057
IKLYL
Sbjct: 301 IKLYL 305
>ref|XP_857908.1| PREDICTED: similar to Translation initiation factor eIF-2B alpha
subunit (eIF-2B GDP-GTP exchange factor) isoform 3 [Canis
familiaris].
Length = 294
Score = 491 bits (1264), Expect = e-139
Identities = 258/305 (84%), Positives = 264/305 (86%)
Frame = +2
Query: 143 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLCXXX 322
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLE+LKRDKGETIQGLRANLTSAI TLC
Sbjct: 1 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIGTLCGVD 60
Query: 323 XXXXXXXXXELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK 502
+LFLRFISLTSLEYSDYSKCKKIMIERGE+FLRR SLSR KIAD+CHTFIK
Sbjct: 61 SSVAVSSGGKLFLRFISLTSLEYSDYSKCKKIMIERGELFLRRTSLSRNKIADLCHTFIK 120
Query: 503 DGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 682
DGARILTHAYS KKRFSV KKMAKALCHLNVPVTVVLD
Sbjct: 121 DGARILTHAYSRVVLRVLEAAVAAKKRFSV-----------KKMAKALCHLNVPVTVVLD 169
Query: 683 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 862
AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP
Sbjct: 170 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 229
Query: 863 LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 1042
LNQQDVPDKFKYKADTLK+VQ QDLKEEHPWVDYT+PSLITLLFTDLGVLTPSAVSDEL
Sbjct: 230 LNQQDVPDKFKYKADTLKTVQTEQDLKEEHPWVDYTSPSLITLLFTDLGVLTPSAVSDEL 289
Query: 1043 IKLYL 1057
IKLYL
Sbjct: 290 IKLYL 294
>ref|XP_532909.2| PREDICTED: similar to eukaryotic translation initiation factor 2B,
subunit 4 delta long isoform isoform 1 [Canis
familiaris].
Length = 545
Score = 89.4 bits (220), Expect = 1e-17
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ + I +G IL + S +RF V + +S+P L G+
Sbjct: 333 KIVLAAQAISRFAYKKINNGDVILVYGCSSLVSRILQEAWAKGRRFRVVVVDSRPRLEGR 392
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
++L VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 393 HTLRSLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 452
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKF---KYKADTLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + + L + Q L+ + D
Sbjct: 453 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLLCERGEHVALANWQNHLSLRLLNLVYD 512
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 513 VTPPELVDLVITELGMIPCSSV 534
>ref|XP_860673.1| PREDICTED: similar to eukaryotic translation initiation factor 2B,
subunit 4 delta short isoform isoform 3 [Canis
familiaris].
Length = 317
Score = 89.4 bits (220), Expect = 1e-17
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ + I +G IL + S +RF V + +S+P L G+
Sbjct: 105 KIVLAAQAISRFAYKKINNGDVILVYGCSSLVSRILQEAWAKGRRFRVVVVDSRPRLEGR 164
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
++L VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 165 HTLRSLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 224
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKF---KYKADTLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + + L + Q L+ + D
Sbjct: 225 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLLCERGEHVALANWQNHLSLRLLNLVYD 284
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 285 VTPPELVDLVITELGMIPCSSV 306
>ref|XP_860642.1| PREDICTED: similar to eukaryotic translation initiation factor 2B,
subunit 4 delta short isoform isoform 2 [Canis
familiaris].
Length = 524
Score = 89.4 bits (220), Expect = 1e-17
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ + I +G IL + S +RF V + +S+P L G+
Sbjct: 312 KIVLAAQAISRFAYKKINNGDVILVYGCSSLVSRILQEAWAKGRRFRVVVVDSRPRLEGR 371
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
++L VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 372 HTLRSLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 431
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKF---KYKADTLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + + L + Q L+ + D
Sbjct: 432 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLLCERGEHVALANWQNHLSLRLLNLVYD 491
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 492 VTPPELVDLVITELGMIPCSSV 513
>ref|XP_547911.2| PREDICTED: similar to Translation initiation factor eIF-2B beta
subunit (eIF-2B GDP-GTP exchange factor) (S20I15)
(S20III15) isoform 1 [Canis familiaris].
Length = 351
Score = 82.8 bits (203), Expect = 9e-16
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Frame = +2
Query: 575 KKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENG 754
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ NG
Sbjct: 184 KRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANG 243
Query: 755 GIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG- 931
+ GT+ +A+ AK + P V A FK FP N++D KF + L +
Sbjct: 244 ALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFP-NEEDSFHKFVAPEEVLPFTEGDI 302
Query: 932 -QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 1054
+ + P DY P LITL +++G PS + + +LY
Sbjct: 303 LEKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELY 344
>ref|XP_868103.1| PREDICTED: similar to Translation initiation factor eIF-2B beta
subunit (eIF-2B GDP-GTP exchange factor) (S20I15)
(S20III15) isoform 2 [Canis familiaris].
Length = 293
Score = 66.6 bits (161), Expect = 7e-11
Identities = 37/106 (34%), Positives = 58/106 (54%)
Frame = +2
Query: 575 KKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENG 754
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ NG
Sbjct: 184 KRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANG 243
Query: 755 GIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKF 892
+ GT+ +A+ AK + P V A FK FP N++D KF
Sbjct: 244 ALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFP-NEEDSFHKF 288
>ref|XP_542030.1| PREDICTED: similar to CG11334-PB, isoform B [Canis familiaris].
Length = 358
Score = 61.2 bits (147), Expect = 3e-09
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Frame = +2
Query: 593 YITESQPDLSGKKM-AKALCHLNVPVTVVLD--AAVGYIMEKVDLVIVGAEGVVENGGII 763
+ TE++P G ++ A L + +P T++ D AA V V+VGA+ VV NG
Sbjct: 198 FCTETRPYNQGARLTAFELVYEQIPATLIADSMAAAAMAHRGVSAVVVGADRVVANGDTA 257
Query: 764 NKIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQQDVPDKFKYKADTLKSVQ-AGQD 937
NK+GT Q+A+ AK PFYV A S +RL + + ++ + + V+ A
Sbjct: 258 NKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPGQELTDVNGVRIAAPG 317
Query: 938 LKEEHPWVDYTAPSLIT-LLFTDLGVLTP 1021
+ +P D T LIT + T+LGV P
Sbjct: 318 IGVWNPAFDVTPHDLITGGIITELGVFAP 346
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,196,851
Number of extensions: 1482492
Number of successful extensions: 3935
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3929
Number of HSP's successfully gapped: 8
Length of query: 571
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 463
Effective length of database: 15,274,216
Effective search space: 7071962008
Effective search space used: 7071962008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003269
(1715 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001405.1| translation initiation factor eIF-2B subunit al... 523 e-148
Alignment gi|NP_001029288.1| translation initiation factor eIF-2B subunit... 95 2e-19
Alignment gi|NP_056451.3| translation initiation factor eIF-2B subunit de... 95 2e-19
Alignment gi|NP_751945.2| translation initiation factor eIF-2B subunit de... 95 2e-19
Alignment gi|NP_055054.1| translation initiation factor eIF-2B subunit be... 83 9e-16
Alignment gi|NP_001026897.1| methylthioribose-1-phosphate isomerase isofo... 62 2e-09
Alignment gi|NP_115661.1| methylthioribose-1-phosphate isomerase isoform ... 60 6e-09
>ref|NP_001405.1| translation initiation factor eIF-2B subunit alpha [Homo sapiens].
Length = 305
Score = 523 bits (1347), Expect = e-148
Identities = 269/305 (88%), Positives = 273/305 (89%)
Frame = +2
Query: 143 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLCXXX 322
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLE+LKRDKGETIQGLRANLTSAIETLC
Sbjct: 1 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVD 60
Query: 323 XXXXXXXXXELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK 502
ELFLRFISL SLEYSDYSKCKKIMIERGE+FLRRISLSR KIAD+CHTFIK
Sbjct: 61 SSVAVSSGGELFLRFISLASLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIK 120
Query: 503 DGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 682
DGA ILTHAYS KKRFSVY+TESQPDLSGKKMAKALCHLNVPVTVVLD
Sbjct: 121 DGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLD 180
Query: 683 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 862
AAVGYIMEK DLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP
Sbjct: 181 AAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240
Query: 863 LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 1042
LNQQDVPDKFKYKADTLK Q GQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL
Sbjct: 241 LNQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 300
Query: 1043 IKLYL 1057
IKLYL
Sbjct: 301 IKLYL 305
>ref|NP_001029288.1| translation initiation factor eIF-2B subunit delta isoform 2 [Homo
sapiens].
Length = 523
Score = 94.7 bits (234), Expect = 2e-19
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ + I +G IL + S +RF V + +S+P L G+
Sbjct: 311 KIVLAAQAISRFAYQKISNGDVILVYGCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGR 370
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
++L H VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 371 HTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 430
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKFKYKAD---TLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + K L + Q L+ + D
Sbjct: 431 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGEHVALANWQNHASLRLLNLVYD 490
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 491 VTPPELVDLVITELGMIPCSSV 512
>ref|NP_056451.3| translation initiation factor eIF-2B subunit delta isoform 3 [Homo
sapiens].
Length = 522
Score = 94.7 bits (234), Expect = 2e-19
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ + I +G IL + S +RF V + +S+P L G+
Sbjct: 310 KIVLAAQAISRFAYQKISNGDVILVYGCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGR 369
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
++L H VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 370 HTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 429
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKFKYKAD---TLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + K L + Q L+ + D
Sbjct: 430 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGEHVALANWQNHASLRLLNLVYD 489
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 490 VTPPELVDLVITELGMIPCSSV 511
>ref|NP_751945.2| translation initiation factor eIF-2B subunit delta isoform 1 [Homo
sapiens].
Length = 543
Score = 94.7 bits (234), Expect = 2e-19
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ + I +G IL + S +RF V + +S+P L G+
Sbjct: 331 KIVLAAQAISRFAYQKISNGDVILVYGCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGR 390
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
++L H VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 391 HTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 450
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKFKYKAD---TLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + K L + Q L+ + D
Sbjct: 451 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGEHVALANWQNHASLRLLNLVYD 510
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 511 VTPPELVDLVITELGMIPCSSV 532
>ref|NP_055054.1| translation initiation factor eIF-2B subunit beta [Homo sapiens].
Length = 351
Score = 82.8 bits (203), Expect = 9e-16
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Frame = +2
Query: 575 KKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENG 754
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ NG
Sbjct: 184 KRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANG 243
Query: 755 GIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG- 931
+ GT+ +A+ AK + P V A FK FP N++D KF + L +
Sbjct: 244 ALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFP-NEEDSFHKFVAPEEVLPFTEGDI 302
Query: 932 -QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 1054
+ + P DY P LITL +++G PS + + +LY
Sbjct: 303 LEKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELY 344
>ref|NP_001026897.1| methylthioribose-1-phosphate isomerase isoform 1 [Homo sapiens].
Length = 369
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Frame = +2
Query: 593 YITESQPDLSGKKM-AKALCHLNVPVTVVLDAAVGYIMEK--VDLVIVGAEGVVENGGII 763
+ TE++P G ++ A L + +P T++ D+ V M V V+VGA+ VV NG
Sbjct: 198 FCTETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTA 257
Query: 764 NKIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQQDVPDKFKYKADTLKSVQ-AGQD 937
NK+GT Q+A+ AK PFYV A S +RL + + ++ + + V+ A
Sbjct: 258 NKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPG 317
Query: 938 LKEEHPWVDYTAPSLIT-LLFTDLGVLTPSAVSDEL 1042
+ +P D T LIT + T+LGV P + L
Sbjct: 318 IGVWNPAFDVTPHDLITGGIITELGVFAPEELRTAL 353
>ref|NP_115661.1| methylthioribose-1-phosphate isomerase isoform 2 [Homo sapiens].
Length = 322
Score = 60.1 bits (144), Expect = 6e-09
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +2
Query: 596 ITESQPDLSGKKM-AKALCHLNVPVTVVLDAAVGYIMEK--VDLVIVGAEGVVENGGIIN 766
+ E++P G ++ A L + +P T++ D+ V M V V+VGA+ VV NG N
Sbjct: 152 VLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTAN 211
Query: 767 KIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQQDVPDKFKYKADTLKSVQ-AGQDL 940
K+GT Q+A+ AK PFYV A S +RL + + ++ + + V+ A +
Sbjct: 212 KVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGI 271
Query: 941 KEEHPWVDYTAPSLIT-LLFTDLGVLTPSAVSDEL 1042
+P D T LIT + T+LGV P + L
Sbjct: 272 GVWNPAFDVTPHDLITGGIITELGVFAPEELRTAL 306
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,120,335
Number of extensions: 1446631
Number of successful extensions: 3979
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3974
Number of HSP's successfully gapped: 7
Length of query: 571
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 463
Effective length of database: 14,737,052
Effective search space: 6823255076
Effective search space used: 6823255076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003269
(1715 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663346.1| translation initiation factor eIF-2B subunit al... 508 e-144
Alignment gi|NP_034252.2| translation initiation factor eIF-2B subunit de... 98 2e-20
Alignment gi|NP_001120828.1| translation initiation factor eIF-2B subunit... 98 2e-20
Alignment gi|NP_001120827.1| translation initiation factor eIF-2B subunit... 98 2e-20
Alignment gi|NP_663420.1| translation initiation factor eIF-2B subunit be... 80 5e-15
Alignment gi|NP_080699.3| methylthioribose-1-phosphate isomerase [Mus mus... 66 1e-10
>ref|NP_663346.1| translation initiation factor eIF-2B subunit alpha [Mus musculus].
Length = 305
Score = 508 bits (1307), Expect = e-144
Identities = 262/305 (85%), Positives = 272/305 (89%)
Frame = +2
Query: 143 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLCXXX 322
M+D ELIEYFKSQMK DP MASAVAAI+TLLE+LKRDKGET+QGLRANLT AI+TLC
Sbjct: 1 MEDGELIEYFKSQMKGDPKMASAVAAIQTLLEFLKRDKGETLQGLRANLTYAIKTLCGVD 60
Query: 323 XXXXXXXXXELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK 502
ELFLRFISLTSLEYSDYSKCKKIMIERGE+FLRRISLSR KIA++CHTFIK
Sbjct: 61 SSVAVSSGGELFLRFISLTSLEYSDYSKCKKIMIERGELFLRRISLSRNKIANLCHTFIK 120
Query: 503 DGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 682
DGARILTHAYS KKRFSVYITESQPDLSGKKMAKAL HLNVPVTVVLD
Sbjct: 121 DGARILTHAYSRVVLRVLEEAVAAKKRFSVYITESQPDLSGKKMAKALSHLNVPVTVVLD 180
Query: 683 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 862
AAVGYIMEK DLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP
Sbjct: 181 AAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240
Query: 863 LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 1042
LNQ+DVPDKFKYKADTLKSVQ GQDLKEEHPWVDYT+PSLITLLFTDLGVLTPSAVSDEL
Sbjct: 241 LNQEDVPDKFKYKADTLKSVQTGQDLKEEHPWVDYTSPSLITLLFTDLGVLTPSAVSDEL 300
Query: 1043 IKLYL 1057
IKLYL
Sbjct: 301 IKLYL 305
>ref|NP_034252.2| translation initiation factor eIF-2B subunit delta isoform 2 [Mus
musculus].
Length = 524
Score = 97.8 bits (242), Expect = 2e-20
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ T I DG IL + S +RF V + +S+P L G+
Sbjct: 312 KIVLAAQAISRFASTKISDGDVILVYGCSSLVSRILQEARVEGRRFRVVVVDSRPRLEGR 371
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
M +L VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 372 HMLHSLVRAGVPTSYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 431
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKFKYKAD---TLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + K L + Q+ L+ + D
Sbjct: 432 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGDQVALANWQSHPSLRLLNLVYD 491
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 492 VTPPELVDLVITELGMIPCSSV 513
>ref|NP_001120828.1| translation initiation factor eIF-2B subunit delta isoform 1 [Mus
musculus].
Length = 544
Score = 97.8 bits (242), Expect = 2e-20
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ T I DG IL + S +RF V + +S+P L G+
Sbjct: 332 KIVLAAQAISRFASTKISDGDVILVYGCSSLVSRILQEARVEGRRFRVVVVDSRPRLEGR 391
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
M +L VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 392 HMLHSLVRAGVPTSYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 451
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKFKYKAD---TLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + K L + Q+ L+ + D
Sbjct: 452 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGDQVALANWQSHPSLRLLNLVYD 511
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 512 VTPPELVDLVITELGMIPCSSV 533
>ref|NP_001120827.1| translation initiation factor eIF-2B subunit delta isoform 1 [Mus
musculus].
Length = 544
Score = 97.8 bits (242), Expect = 2e-20
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Frame = +2
Query: 449 RISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGK 628
+I L+ + I+ T I DG IL + S +RF V + +S+P L G+
Sbjct: 332 KIVLAAQAISRFASTKISDGDVILVYGCSSLVSRILQEARVEGRRFRVVVVDSRPRLEGR 391
Query: 629 KMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQ 808
M +L VP + +L A Y++ +V V++GA ++ NG +++++GT Q+A+ A+A
Sbjct: 392 HMLHSLVRAGVPTSYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAH 451
Query: 809 NKPFYVVAESFKFVR-----LFPLNQQDVPDKFKYKAD---TLKSVQAGQDLKEEHPWVD 964
N P V E++KF F N+ D PD + K L + Q+ L+ + D
Sbjct: 452 NVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGDQVALANWQSHPSLRLLNLVYD 511
Query: 965 YTAPSLITLLFTDLGVLTPSAV 1030
T P L+ L+ T+LG++ S+V
Sbjct: 512 VTPPELVDLVITELGMIPCSSV 533
>ref|NP_663420.1| translation initiation factor eIF-2B subunit beta [Mus musculus].
Length = 351
Score = 80.1 bits (196), Expect = 5e-15
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Frame = +2
Query: 575 KKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENG 754
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ NG
Sbjct: 184 KRKFHVIVAECAPFCQGHEMAVNLSKEGIETTVMTDAAIFAVMSRVNKVIIGTKTILANG 243
Query: 755 GIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG- 931
+ GT+ +A+ AK + P V A FK FP +++D KF + L +
Sbjct: 244 SLRAVAGTHTLALAAKHHSTPLIVCAPMFKLSPQFP-SEEDSFHKFVAPEEVLPFTEGDI 302
Query: 932 -QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 1054
+ + P DY P LITL +++G PS + + +LY
Sbjct: 303 LEKVSVHCPVFDYVPPDLITLFISNIGGNAPSYIYRLMSELY 344
>ref|NP_080699.3| methylthioribose-1-phosphate isomerase [Mus musculus].
Length = 369
Score = 65.9 bits (159), Expect = 1e-10
Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Frame = +2
Query: 593 YITESQPDLSGKKM-AKALCHLNVPVTVVLD--AAVGYIMEKVDLVIVGAEGVVENGGII 763
+ TE++P G ++ A L + +P T++ D AA V V+VGA+ VV NG
Sbjct: 198 FCTETRPYNQGARLTAFELVYEQIPATLITDSMAAAAMAHRGVSAVVVGADRVVANGDTA 257
Query: 764 NKIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQQDVPDKFKYKADTLKSVQ-AGQD 937
NKIGT Q+A+ AK PFYV A S + L + + ++ + L V+ A Q
Sbjct: 258 NKIGTYQLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERPSQELTDLNGVRIAAQG 317
Query: 938 LKEEHPWVDYTAPSLIT-LLFTDLGVLTPSAVSDEL 1042
++ +P D T LIT + T+LGV P + L
Sbjct: 318 IRVWNPAFDVTPHELITGGIITELGVFAPEELRGAL 353
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,684,309
Number of extensions: 1230596
Number of successful extensions: 3410
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3406
Number of HSP's successfully gapped: 6
Length of query: 571
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 464
Effective length of database: 12,403,707
Effective search space: 5755320048
Effective search space used: 5755320048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003269
(1715 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927637.1| PREDICTED: translation initiation factor eIF... 538 e-153
Alignment gi|XP_003128716.1| PREDICTED: translation initiation factor eIF... 84 3e-16
Alignment gi|XP_003123394.1| PREDICTED: methylthioribose-1-phosphate isom... 62 1e-09
>ref|XP_001927637.1| PREDICTED: translation initiation factor eIF-2B subunit alpha [Sus
scrofa].
Length = 305
Score = 538 bits (1387), Expect = e-153
Identities = 279/305 (91%), Positives = 280/305 (91%)
Frame = +2
Query: 143 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLCXXX 322
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLC
Sbjct: 1 MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEYLKRDKGETIQGLRANLTSAIETLCGVD 60
Query: 323 XXXXXXXXXELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK 502
ELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK
Sbjct: 61 SSVAVSSGGELFLRFISLTSLEYSDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIK 120
Query: 503 DGARILTHAYSXXXXXXXXXXXXXKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLD 682
DGARILTHAYS KKRFSVYITESQPDLSG+KMAKALCHLNVPVTVVLD
Sbjct: 121 DGARILTHAYSRVVLRVLEAAVAAKKRFSVYITESQPDLSGQKMAKALCHLNVPVTVVLD 180
Query: 683 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 862
AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP
Sbjct: 181 AAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240
Query: 863 LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 1042
LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL
Sbjct: 241 LNQQDVPDKFKYKADTLKSVQAGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 300
Query: 1043 IKLYL 1057
IKLYL
Sbjct: 301 IKLYL 305
>ref|XP_003128716.1| PREDICTED: translation initiation factor eIF-2B subunit beta-like
[Sus scrofa].
Length = 351
Score = 83.6 bits (205), Expect = 3e-16
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 2/223 (0%)
Frame = +2
Query: 392 SDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIKDGARILTHAYSXXXXXXXXXXXX 571
S Y++ + +IE L + + + IA I I+T +S
Sbjct: 124 SHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEAAR 183
Query: 572 XKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVEN 751
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ N
Sbjct: 184 -KRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 242
Query: 752 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG 931
G + GT+ +A+ AK + P V A FK FP N++D KF + L +
Sbjct: 243 GALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFP-NEEDSFHKFVAPEEVLPFTEGD 301
Query: 932 --QDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLY 1054
+ + P DY P LITL +++G PS + + +LY
Sbjct: 302 ILEKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELY 344
>ref|XP_003123394.1| PREDICTED: methylthioribose-1-phosphate isomerase [Sus scrofa].
Length = 358
Score = 62.0 bits (149), Expect = 1e-09
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 6/149 (4%)
Frame = +2
Query: 593 YITESQPDLSGKKM-AKALCHLNVPVTVVLD--AAVGYIMEKVDLVIVGAEGVVENGGII 763
+ TE++P G ++ A L + ++P T++ D AA + V V+VGA+ VV NG
Sbjct: 198 FCTETRPYNQGARLTAFELVYEHIPATLITDSMAAAAMAHKGVSAVVVGADRVVANGDTA 257
Query: 764 NKIGTNQMAVCAKAQNKPFYVVAESFKF-VRLFPLNQQDVPDKFKYKADTLKSVQ-AGQD 937
NK+GT Q+A+ AK PFYV A S +RL + + ++ + + V+ A
Sbjct: 258 NKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLESGQEIIIEERPGQELTDVNGVRIAAPG 317
Query: 938 LKEEHPWVDYTAPSLIT-LLFTDLGVLTP 1021
+ +P D T LIT + T+LGV P
Sbjct: 318 IGVWNPAFDVTPHDLITGGIITELGVFAP 346
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,189,916
Number of extensions: 1322475
Number of successful extensions: 2582
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2574
Number of HSP's successfully gapped: 3
Length of query: 571
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 467
Effective length of database: 8,754,644
Effective search space: 4088418748
Effective search space used: 4088418748
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003269
(1715 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1832 0.0
Sscrofa_Chr14 904 0.0
Sscrofa_Chr13 184 1e-43
>Sscrofa_Chr15
|| Length = 157681621
Score = 1832 bits (924), Expect = 0.0
Identities = 1145/1215 (94%), Gaps = 24/1215 (1%)
Strand = Plus / Minus
Query: 156 agttaattgaatactttaagtctcaaatgaaagaagatcctgatatggcctcagcagtag 215
|||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 140998150 agttaattgaatactttacctctcaaatggaagaagatcctaatatggcctcagcagtag 140998091
Query: 216 ctgccatccggactttgctggagtacttgaagagagataaaggggagacaatccagggcc 275
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 140998090 ctgccatctggactttgctggagt-cttgaagagagataaaggggagacaatccagggcc 140998032
Query: 276 tgagagcgaatctcaccagtgccatagagaccctgtgtggcgtggactcttctgtggccg 335
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 140998031 tgagagcgaatctcaccagtgccacagagaccctgtgtggcgtggactcttctgtggccg 140997972
Query: 336 tgtcctcaggcggggagctcttcctgcgcttcatcagcctt-acctccctggaatactct 394
|| |||| || |||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 140997971 tgccctccagcagggagctcctcctgcgcttcatcggcctttacctccctggaatactct 140997912
Query: 395 gattactccaaatgtaagaagatcatgattgagcggggagagatttttctcaggagaata 454
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 140997911 gattactccaaatgtaaaaagatcgtgattgagcggggagagatttttctcaggagaata 140997852
Query: 455 tcactgtcgagaaagaaaattgcagatatgtgccatactttcatcaaagatggggcgaga 514
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140997851 tcactgtcgagaaagacaattgcagatatgtgccatactttcatcaaagatggggcgaga 140997792
Query: 515 atactaactcacgcctactccagagtggtcctgcgagtcttggaagcagccgtggcagcc 574
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 140997791 atacgaactcacgcctactccagagtggtcctgagagtcttggaagcagccgtggcagcc 140997732
Query: 575 aagaagcgtttcagtgtatacattacagagtcacagcctgacttgtcaggtaagaaaatg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140997731 aagaagcgtttcagtgtatacattacagagtcacagcctgacttgtcaggtaagaaaatg 140997672
Query: 635 gccaaagccctctgccatctcaatgtccccgtcactgtggtcctggatgctgctgttggc 694
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 140997671 gccaaagccctctgccatctcaatgtccccgtccctgtggtcctggatgctgctgctggc 140997612
Query: 695 tacatcatggagaaagtggatcttgtcatagttggcgctgaaggagttgttgaaaacgga 754
||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct: 140997611 tacatcatggagaaagtggatctcgtcgtagttggcgctgaagga---gttgaaaacgga 140997555
Query: 755 ggaattattaacaagattggaaccaaccagatggccgtatgcgccaaagcacagaacaag 814
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140997554 ggaatgattaacaaggttggaaccaaccagatggccgtatgcgccaaagcacagaacaag 140997495
Query: 815 cctttttatgttgttgcagagagtttcaagtttgtacggctcttcccactaaatcagcaa 874
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140997494 cctttttatgttgttgc--agagtttcaagtttgtacggctcttcccactaaatcagcaa 140997437
Query: 875 gacgtcccagataagtttaagtacaaggcagatactctgaagtctgtgcaggccggacag 934
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140997436 gacgccccaggtaagtttaagtacaaggcagatactctgaagtctgtgcaggccggacag 140997377
Query: 935 gacctcaaagaggagcacccatgggttgactacaccgccccttcgttgatcacactgctg 994
|| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 140997376 gatctcaaagaggagcacccatgggttgactacaccg-cccttccttgatcacactgctc 140997318
Query: 995 ttcacggacctgggggtgttgacgccctcggcagtcagcgacgaactcatcaagctctat 1054
|||| |||||||||| ||||||||||||| || ||||| |||||||||||||||||| ||
Sbjct: 140997317 ttcagggacctggggttgttgacgccctctgcggtcagtgacgaactcatcaagctccat 140997258
Query: 1055 ctctaacctccggccctttcctgatgcttttggagatccatctggagtgcagggaatagg 1114
||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||
Sbjct: 140997257 ctctaacctccggccctttcctgatgcttctggagatccgtctggaatgcggggaatagg 140997198
Query: 1115 aagggaggggccggggcacatcttcctctttcatcagtcaagtagccaa----------- 1163
||||||||||||||||||| ||||||||| ||| |||||||| ||||||
Sbjct: 140997197 aagggaggggccggggcacgtcttcctctctcaccagtcaagcagccaataatctaactt 140997138
Query: 1164 ----taatctaacttgtatgtctggaaactggaaatgaatgaaagctgatgaagttggga 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140997137 gtattaatctaacttgtatgtctggaaactggaaatgaatgaaagctgatgaagttggga 140997078
Query: 1220 gcagcctcttgacctctcagtgagcccaggccaaaactgaattgttttttatgaagtttt 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 140997077 gcagcctcttgacctctcagtgagcccaggccaaaactgaattgttttttatgaagcttt 140997018
Query: 1280 atggactaaggacttaagagtataagccttagagaa-ttttttcttcatttaagtcccat 1338
||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 140997017 atggactaaggacttaaaagtataagtcttagagaatttttttattcatttaagtcccat 140996958
Query: 1339 ctaagatatgttctt 1353
|||||||||||||||
Sbjct: 140996957 ctaagatatgttctt 140996943
Score = 264 bits (133), Expect = 1e-67
Identities = 164/173 (94%), Gaps = 6/173 (3%)
Strand = Plus / Minus
Query: 1545 caatgttcatgtttcccctaaaatggagcctaaactgtgcttacatttttctggacactt 1604
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140996749 caatgttcatgcttcccctaaaatggagcctaaactgtgcttacatttttctggacactt 140996690
Query: 1605 t--ttcatttctggttttcagaaatacaagttagattactaactaatgaaagatgtgccc 1662
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 140996689 tctttcatttctggttttcagaaatacaagttagattactag----tgaaagatgtgccc 140996634
Query: 1663 atccccgctcccttcatcttccagacactccagactcatctgccaaaagcatc 1715
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140996633 agccccgctcccttcatcttccagacactccagactcatctgccaaaagcatc 140996581
Score = 83.8 bits (42), Expect = 3e-13
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 89 caagacatcgcgtgtggttctcggtcctttgcgctccgcggtccggagggcaccatggat 148
||||||||||| || |||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 140998513 caagacatcgcatgcggttctgggtcctttgcgctccgcgggccggagggcaccgtggat 140998454
Query: 149 gacaag 154
| ||||
Sbjct: 140998453 ggcaag 140998448
>Sscrofa_Chr14
|| Length = 153851969
Score = 904 bits (456), Expect = 0.0
Identities = 459/460 (99%)
Strand = Plus / Plus
Query: 894 agtacaaggcagatactctgaagtctgtgcaggccggacaggacctcaaagaggagcacc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059008 agtacaaggcagatactctgaagtctgtgcaggccggacaggacctcaaagaggagcacc 31059067
Query: 954 catgggttgactacaccgccccttcgttgatcacactgctgttcacggacctgggggtgt 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059068 catgggttgactacaccgccccttcgttgatcacactgctgttcacggacctgggggtgt 31059127
Query: 1014 tgacgccctcggcagtcagcgacgaactcatcaagctctatctctaacctccggcccttt 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059128 tgacgccctcggcagtcagcgacgaactcatcaagctctatctctaacctccggcccttt 31059187
Query: 1074 cctgatgcttttggagatccatctggagtgcagggaataggaagggaggggccggggcac 1133
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 31059188 cctgatgcttttggagatccatctggaatgcagggaataggaagggaggggccggggcac 31059247
Query: 1134 atcttcctctttcatcagtcaagtagccaataatctaacttgtatgtctggaaactggaa 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059248 atcttcctctttcatcagtcaagtagccaataatctaacttgtatgtctggaaactggaa 31059307
Query: 1194 atgaatgaaagctgatgaagttgggagcagcctcttgacctctcagtgagcccaggccaa 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059308 atgaatgaaagctgatgaagttgggagcagcctcttgacctctcagtgagcccaggccaa 31059367
Query: 1254 aactgaattgttttttatgaagttttatggactaaggacttaagagtataagccttagag 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059368 aactgaattgttttttatgaagttttatggactaaggacttaagagtataagccttagag 31059427
Query: 1314 aattttttcttcatttaagtcccatctaagatatgttctt 1353
||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059428 aattttttcttcatttaagtcccatctaagatatgttctt 31059467
Score = 339 bits (171), Expect = 3e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 1545 caatgttcatgtttcccctaaaatggagcctaaactgtgcttacatttttctggacactt 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059659 caatgttcatgtttcccctaaaatggagcctaaactgtgcttacatttttctggacactt 31059718
Query: 1605 tttcatttctggttttcagaaatacaagttagattactaactaatgaaagatgtgcccat 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059719 tttcatttctggttttcagaaatacaagttagattactaactaatgaaagatgtgcccat 31059778
Query: 1665 ccccgctcccttcatcttccagacactccagactcatctgccaaaagcatc 1715
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31059779 ccccgctcccttcatcttccagacactccagactcatctgccaaaagcatc 31059829
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 3 cctcatggcgccggaagtggagtgcggcgctgcaccgcgcactgtcagtttctgtgactt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31047796 cctcatggcgccggaagtggagtgcggcgctgcaccgcgcactgtcagtttctgtgactt 31047855
Query: 63 ggggtccgcgcggtcgcacgacacagcaagacatcgcgtgtggttctcggtcctttgcgc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31047856 ggggtccgcgcggtcgcacgacacagcaagacatcgcgtgtggttctcggtcctttgcgc 31047915
Query: 123 tccgcggtccggagggcaccatggatgacaagg 155
|||||||||||||||||||||||||||||||||
Sbjct: 31047916 tccgcggtccggagggcaccatggatgacaagg 31047948
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 256 aggggagacaatccagggcctgagagcgaatctcaccagtgccatagagaccctgtgtgg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31051221 aggggagacaatccagggcctgagagcgaatctcaccagtgccatagagaccctgtgtgg 31051280
Query: 316 cgtggactcttctgtggccgtgtcctcaggcggggagctcttcctgcgcttcatcagcct 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31051281 cgtggactcttctgtggccgtgtcctcaggcggggagctcttcctgcgcttcatcagcct 31051340
Query: 376 tacctccctggaatactctg 395
||||||||||||||||||||
Sbjct: 31051341 tacctccctggaatactctg 31051360
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 768 agattggaaccaaccagatggccgtatgcgccaaagcacagaacaagcctttttatgttg 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31058222 agattggaaccaaccagatggccgtatgcgccaaagcacagaacaagcctttttatgttg 31058281
Query: 828 ttgcagagagtttcaagtttgtacggctcttcccactaaatcagcaagacgtcccagata 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31058282 ttgcagagagtttcaagtttgtacggctcttcccactaaatcagcaagacgtcccagata 31058341
Query: 888 agtttaag 895
||||||||
Sbjct: 31058342 agtttaag 31058349
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 395 gattactccaaatgtaagaagatcatgattgagcggggagagatttttctcaggagaata 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31051470 gattactccaaatgtaagaagatcatgattgagcggggagagatttttctcaggagaata 31051529
Query: 455 tcactgtcgagaaagaaaattgcagatatgtgccatactttcatcaaagatggggcg 511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31051530 tcactgtcgagaaagaaaattgcagatatgtgccatactttcatcaaagatggggcg 31051586
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 511 gagaatactaactcacgcctactccagagtggtcctgcgagtcttggaagcagccgtggc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31053532 gagaatactaactcacgcctactccagagtggtcctgcgagtcttggaagcagccgtggc 31053591
Query: 571 agccaagaagcgtttcagtgtatacattacagagtcacagcctgacttgtcagg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31053592 agccaagaagcgtttcagtgtatacattacagagtcacagcctgacttgtcagg 31053645
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 155 gagttaattgaatactttaagtctcaaatgaaagaagatcctgatatggcctcagcagta 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31049378 gagttaattgaatactttaagtctcaaatgaaagaagatcctgatatggcctcagcagta 31049437
Query: 215 gctgccatccggactttgctggagtacttgaagagagataaagg 258
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31049438 gctgccatccggactttgctggagtacttgaagagagataaagg 31049481
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 693 gctacatcatggagaaagtggatcttgtcatagttggcgctgaaggagttgttgaaaacg 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31055977 gctacatcatggagaaagtggatcttgtcatagttggcgctgaaggagttgttgaaaacg 31056036
Query: 753 gaggaattattaacaag 769
|||||||||||||||||
Sbjct: 31056037 gaggaattattaacaag 31056053
Score = 139 bits (70), Expect = 6e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 624 gtaagaaaatggccaaagccctctgccatctcaatgtccccgtcactgtggtcctggatg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31054421 gtaagaaaatggccaaagccctctgccatctcaatgtccccgtcactgtggtcctggatg 31054480
Query: 684 ctgctgttgg 693
||||||||||
Sbjct: 31054481 ctgctgttgg 31054490
>Sscrofa_Chr13
|| Length = 218635234
Score = 184 bits (93), Expect = 1e-43
Identities = 154/172 (89%), Gaps = 3/172 (1%)
Strand = Plus / Plus
Query: 1546 aatgttcatgtttcccctaaaatggagcctaaactgtgcttacatttttctggacacttt 1605
|||||||||| ||||||||||||||| |||||| ||||||||| |||| |||| ||||||
Sbjct: 113722280 aatgttcatggttcccctaaaatggaacctaaattgtgcttacgtttt-ctggtcacttt 113722338
Query: 1606 --ttcatttctggttttcagaaatacaagttagattactaactaatgaaagatgtgccca 1663
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 113722339 ctttcatttctggttttctgaaatacaacttagattactgactaatgaaagatgtaccca 113722398
Query: 1664 tccccgctcccttcatcttccagacactccagactcatctgccaaaagcatc 1715
|||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 113722399 gcccccctcccttcatcttccctgaactccagactcatctgccaaaagcatc 113722450
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,100,755
Number of extensions: 300
Number of successful extensions: 300
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 15
Length of query: 1715
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1693
Effective length of database: 2,808,408,574
Effective search space: 4754635715782
Effective search space used: 4754635715782
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)