Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003272
(918 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192408.1| zinc finger protein 24 [Bos taurus]. 485 e-137
Alignment gi|XP_002697723.1| PREDICTED: zinc finger protein 24 [Bos tauru... 485 e-137
Alignment gi|XP_002684984.1| PREDICTED: zinc finger protein 390-like [Bos... 196 2e-50
Alignment gi|XP_001788970.1| PREDICTED: zinc finger protein 390-like [Bos... 195 4e-50
Alignment gi|XP_002702938.1| PREDICTED: SCAN domain containing 3 [Bos tau... 178 5e-45
Alignment gi|NP_001039702.1| zinc finger protein 323 [Bos taurus]. 168 5e-42
Alignment gi|NP_001030445.1| zinc finger and SCAN domain-containing prote... 168 5e-42
Alignment gi|XP_002697529.1| PREDICTED: SCAN domain containing 3-like [Bo... 168 7e-42
Alignment gi|NP_001070606.1| zinc finger and SCAN domain-containing prote... 167 2e-41
Alignment gi|NP_001093814.1| zinc finger protein 192 [Bos taurus]. 159 3e-39
>ref|NP_001192408.1| zinc finger protein 24 [Bos taurus].
Length = 368
Score = 485 bits (1248), Expect = e-137
Identities = 238/245 (97%), Positives = 239/245 (97%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 357
MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY
Sbjct: 1 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 60
Query: 358 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 537
QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG
Sbjct: 61 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 120
Query: 538 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 717
EEAVTVLEDLESELDDPGQPVSLRRRKR+VLVEEIVSQEEAQGLPSSELDAVENQLKWAS
Sbjct: 121 EEAVTVLEDLESELDDPGQPVSLRRRKREVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 180
Query: 718 WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE 897
WELHSLRHCDDDARTENGALAPKQEIPSA ESHE PGTLNIGV QIFKYGE CFPKGRFE
Sbjct: 181 WELHSLRHCDDDARTENGALAPKQEIPSAGESHEVPGTLNIGVPQIFKYGETCFPKGRFE 240
Query: 898 RKEIP 912
RK P
Sbjct: 241 RKRNP 245
>ref|XP_002697723.1| PREDICTED: zinc finger protein 24 [Bos taurus].
Length = 368
Score = 485 bits (1248), Expect = e-137
Identities = 238/245 (97%), Positives = 239/245 (97%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 357
MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY
Sbjct: 1 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 60
Query: 358 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 537
QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG
Sbjct: 61 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 120
Query: 538 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 717
EEAVTVLEDLESELDDPGQPVSLRRRKR+VLVEEIVSQEEAQGLPSSELDAVENQLKWAS
Sbjct: 121 EEAVTVLEDLESELDDPGQPVSLRRRKREVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 180
Query: 718 WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE 897
WELHSLRHCDDDARTENGALAPKQEIPSA ESHE PGTLNIGV QIFKYGE CFPKGRFE
Sbjct: 181 WELHSLRHCDDDARTENGALAPKQEIPSAGESHEVPGTLNIGVPQIFKYGETCFPKGRFE 240
Query: 898 RKEIP 912
RK P
Sbjct: 241 RKRNP 245
>ref|XP_002684984.1| PREDICTED: zinc finger protein 390-like [Bos taurus].
Length = 418
Score = 196 bits (499), Expect = 2e-50
Identities = 112/246 (45%), Positives = 156/246 (63%), Gaps = 6/246 (2%)
Frame = +1
Query: 184 AQSVEEDSILIIPTPDEEEKILRVKLEEDPD-----GEEGSSIPWNHLPDPEVFRQRFRQ 348
A S + L + TP+ E +L VK++E+ G+E + ++ E+FR+RFRQ
Sbjct: 24 APSGASATALALQTPEMHEGLLAVKVKEEKGDHTRMGQE-PGLSGDNPHTREIFRRRFRQ 82
Query: 349 FGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHP 528
F YQ++PGPREA+ +L+ELC WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WVREH P
Sbjct: 83 FCYQETPGPREALRRLQELCHQWLRPEMHTKEQILELLVLEQFLTILPEELQAWVREHRP 142
Query: 529 ENGEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLK 708
+GEEAV VLEDLE ELD+P + V R ++ LV+E + AQ SS+L +E + +
Sbjct: 143 VSGEEAVIVLEDLERELDEPREQVPARDHEQKELVKEKAALGTAQESSSSQLQTLEERPQ 202
Query: 709 WASWELHSLRHCDDDARTENGALAPKQEIPSAVES-HEAPGTLNIGVSQIFKYGEACFPK 885
W + ++ D++ T N LAPK+E+ +S EAP LN + +YGE C +
Sbjct: 203 WNLRGVGPIQEIDNETGTWNVELAPKRELSKEKKSLVEAPEKLNGDTIPVPEYGETCDQE 262
Query: 886 GRFERK 903
GR ER+
Sbjct: 263 GRLERQ 268
>ref|XP_001788970.1| PREDICTED: zinc finger protein 390-like [Bos taurus].
Length = 432
Score = 195 bits (496), Expect = 4e-50
Identities = 109/241 (45%), Positives = 155/241 (64%), Gaps = 6/241 (2%)
Frame = +1
Query: 199 EDSILIIPTPDEEEKILRVKLEEDPD-----GEEGSSIPWNHLPDPEVFRQRFRQFGYQD 363
+ + L + TP+ E +L VK++E+ G+E + ++ E+FR+RFRQF YQ+
Sbjct: 43 DSTALALQTPEMHEGLLAVKVKEEKGDHTRMGQE-PGLSGDNPHTREIFRRRFRQFCYQE 101
Query: 364 SPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEE 543
+PGPREA+ +L+ELC WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WVREH P +GEE
Sbjct: 102 TPGPREALRRLQELCHQWLRPEMHTKEQILELLVLEQFLTILPEELQAWVREHRPVSGEE 161
Query: 544 AVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWE 723
AV VLEDLE ELD+P + V R ++ LV+E + AQ S++L +E + +W
Sbjct: 162 AVIVLEDLERELDEPREQVPARDHEQKELVKEKAALGTAQESSSNQLQTLEERPQWNLRG 221
Query: 724 LHSLRHCDDDARTENGALAPKQEIPSAVES-HEAPGTLNIGVSQIFKYGEACFPKGRFER 900
+ ++ D++ T N LAPK+E+ +S EAP LN + +YGE C +GR ER
Sbjct: 222 VGPIQKIDNETGTWNVELAPKRELSKEKKSLVEAPEKLNGDTIPVPEYGETCDQEGRLER 281
Query: 901 K 903
+
Sbjct: 282 Q 282
>ref|XP_002702938.1| PREDICTED: SCAN domain containing 3 [Bos taurus].
Length = 1326
Score = 178 bits (452), Expect = 5e-45
Identities = 93/171 (54%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
Frame = +1
Query: 229 DEEEKILRVKL-EEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLREL 405
+E+ +I+++K+ EEDP ++ S + N E+ RQRFRQF YQ++PGPREA+SQLREL
Sbjct: 17 EEQGEIIKIKVKEEDPIWDQASFLQKNLSYSRELSRQRFRQFCYQETPGPREALSQLREL 76
Query: 406 CRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDD 585
CRLWL PETHTKEQILEL+VLEQ + ILP+ELQ WVREHHPE+GEE VTVLEDLE ELD+
Sbjct: 77 CRLWLSPETHTKEQILELLVLEQLLTILPEELQAWVREHHPESGEEVVTVLEDLERELDE 136
Query: 586 PGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLR 738
P Q V ++ V +EE + A+ + L ++E++++ S E H L+
Sbjct: 137 PRQQVPQGTYEQAVPMEEKTLLDTAKESLGTHLQSIEDRMECESPESHLLQ 187
>ref|NP_001039702.1| zinc finger protein 323 [Bos taurus].
Length = 435
Score = 168 bits (426), Expect = 5e-42
Identities = 96/229 (41%), Positives = 134/229 (58%), Gaps = 1/229 (0%)
Frame = +1
Query: 232 EEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELCR 411
E++ + VK+EEDP ++ + N+ E RQ FR F YQ++PGPREA+S+LRELC
Sbjct: 6 EQDGLKIVKVEEDPIWDQEPYLRENNFSGQEASRQLFRHFCYQETPGPREALSRLRELCH 65
Query: 412 LWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDP- 588
WLRP+THTKEQILEL+VLEQF+ ILP+ELQ WV EHHPE+GEEAV +EDLE EL +P
Sbjct: 66 QWLRPDTHTKEQILELLVLEQFLTILPEELQAWVCEHHPESGEEAVAAVEDLERELSEPE 125
Query: 589 GQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDARTEN 768
Q ++L + V + + + +L ++ QLK S+ +H D + +N
Sbjct: 126 NQAPDCEHGLAEMLSGDAVHLKAKEESTAFQLQSMVMQLKCESFGVHKFGEQDGETVLKN 185
Query: 769 GALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFERKEIPP 915
L KQE+ + H L + KY E C + R E++ P
Sbjct: 186 QDLTSKQEVLKEM-GHFENSRLQRDIPLDSKYRETCKHESREEKQSGQP 233
>ref|NP_001030445.1| zinc finger and SCAN domain-containing protein 21 [Bos taurus].
Length = 466
Score = 168 bits (426), Expect = 5e-42
Identities = 91/168 (54%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
Frame = +1
Query: 220 PTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLR 399
P P +E+ + VK+EE+ E+G +P E+FRQRFRQFGY D+PGPREA+SQLR
Sbjct: 7 PRPPQEQGPVIVKIEEEE--EKGKRLPM------EIFRQRFRQFGYHDTPGPREALSQLR 58
Query: 400 ELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESEL 579
LC WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WV+EH PE+ EEAVT+LEDLE EL
Sbjct: 59 VLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLEREL 118
Query: 580 DDPGQPVSLRRRKRDVLVEEIVSQEEA-QGLPSSELDAVENQLKWASW 720
D+P VS R++ E++ A + L S +L++VE ++ SW
Sbjct: 119 DEPAPQVSPPPREQKRSWEKMSPSGMAEESLSSPQLESVETSHRYESW 166
>ref|XP_002697529.1| PREDICTED: SCAN domain containing 3-like [Bos taurus].
Length = 163
Score = 168 bits (425), Expect = 7e-42
Identities = 84/136 (61%), Positives = 105/136 (77%), Gaps = 1/136 (0%)
Frame = +1
Query: 229 DEEEKILRVKL-EEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLREL 405
+E+ +I+++K+ EEDP ++ S + N E+ RQRFRQF YQ++PGPREA+SQLREL
Sbjct: 17 EEQGEIIKIKVKEEDPIWDQASFLQKNLSYSRELSRQRFRQFCYQETPGPREALSQLREL 76
Query: 406 CRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDD 585
CRLWL PETHTKEQILEL+VLEQ + ILP+ELQ WVREHHPE+GEE VTVLEDLE ELD+
Sbjct: 77 CRLWLSPETHTKEQILELLVLEQLLTILPEELQAWVREHHPESGEEVVTVLEDLERELDE 136
Query: 586 PGQPVSLRRRKRDVLV 633
P Q L + + V
Sbjct: 137 PRQQSPLESARENYRV 152
>ref|NP_001070606.1| zinc finger and SCAN domain-containing protein 12 [Bos taurus].
Length = 613
Score = 167 bits (422), Expect = 2e-41
Identities = 98/195 (50%), Positives = 128/195 (65%), Gaps = 7/195 (3%)
Frame = +1
Query: 232 EEEKILRVKLEEDPDGEE-------GSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVS 390
+ E++L VK+EE+ EE ++ N EVFR+ FRQF YQ++ GPREA+S
Sbjct: 12 DREELLEVKIEEEELEEEHKYATTQDQNLQKNTTHSREVFRRYFRQFCYQETSGPREALS 71
Query: 391 QLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLE 570
+LRELC WL+PETHTKEQILEL+VLEQF+ ILP+ELQ WV+E HPE+GEE VTVLEDLE
Sbjct: 72 RLRELCHQWLKPETHTKEQILELLVLEQFLTILPEELQAWVQEQHPESGEEVVTVLEDLE 131
Query: 571 SELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDD 750
ELD+PG VS+R +++ ++EIV Q P L +V+ Q K S EL + +
Sbjct: 132 RELDEPGYQVSVRSEEQE--LQEIVPLRTEQE-PRICLQSVQAQPKCESAELEAQQ--KQ 186
Query: 751 DARTENGALAPKQEI 795
D T N KQE+
Sbjct: 187 DIETGNEYRNLKQEV 201
>ref|NP_001093814.1| zinc finger protein 192 [Bos taurus].
Length = 578
Score = 159 bits (402), Expect = 3e-39
Identities = 87/170 (51%), Positives = 116/170 (68%), Gaps = 3/170 (1%)
Frame = +1
Query: 214 IIPTPDE---EEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREA 384
+ P+P + EE ++ VK+EED ++ SS+ N+ P E+FR RFR+ YQ++ GPREA
Sbjct: 9 LAPSPPDQVPEEDLVIVKVEEDHGWDQESSLHENNPPGQELFRLRFRKLCYQETLGPREA 68
Query: 385 VSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLED 564
+ QLR LC WLRP+ +TKEQILEL+VLEQF+ ILP+ELQT V+EH ENGEE VT+LED
Sbjct: 69 LIQLRALCHQWLRPDLNTKEQILELLVLEQFLTILPEELQTLVKEHQLENGEEVVTLLED 128
Query: 565 LESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWA 714
LE ++D G+PV R VL EE++ E A P ++L V Q K A
Sbjct: 129 LERQIDILGRPVPARPHGHRVLWEELMHSESAPEPPDTQLQPVAMQHKSA 178
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,598,250
Number of extensions: 923285
Number of successful extensions: 3543
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 3517
Number of HSP's successfully gapped: 85
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003272
(918 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537285.1| PREDICTED: similar to Zinc finger protein 24 (Z... 486 e-137
Alignment gi|XP_545451.2| PREDICTED: similar to zinc finger protein 452 [... 169 3e-42
Alignment gi|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 ho... 163 2e-40
Alignment gi|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (... 160 1e-39
Alignment gi|XP_545440.2| PREDICTED: similar to Zinc finger protein Kr18 ... 159 3e-39
Alignment gi|XP_860330.1| PREDICTED: similar to zinc finger protein 36 is... 155 5e-38
Alignment gi|XP_854334.1| PREDICTED: similar to zinc finger protein 435 [... 150 2e-36
Alignment gi|XP_546967.2| PREDICTED: similar to zinc finger protein 36 is... 150 2e-36
Alignment gi|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (... 146 2e-35
Alignment gi|XP_546974.2| PREDICTED: similar to zinc finger protein 95 ho... 143 3e-34
>ref|XP_537285.1| PREDICTED: similar to Zinc finger protein 24 (Zinc finger protein
191) (Zinc finger protein KOX17) (Retinoic acid
suppression protein A) (RSG-A) (Zinc finger and SCAN
domain containing protein 3) [Canis familiaris].
Length = 368
Score = 486 bits (1252), Expect = e-137
Identities = 238/245 (97%), Positives = 240/245 (97%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 357
MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY
Sbjct: 1 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 60
Query: 358 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 537
QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG
Sbjct: 61 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 120
Query: 538 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 717
EEAVTVLEDLESELDDPGQPVSLRRRKR+VLVEEIVSQEEAQGLP+SELDAVENQLKWAS
Sbjct: 121 EEAVTVLEDLESELDDPGQPVSLRRRKREVLVEEIVSQEEAQGLPNSELDAVENQLKWAS 180
Query: 718 WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE 897
WELHSLRHCDDD RTENGALAPKQEIPSAVESHE PGTLNIGV QIFKYGEACFPKGRFE
Sbjct: 181 WELHSLRHCDDDGRTENGALAPKQEIPSAVESHEVPGTLNIGVPQIFKYGEACFPKGRFE 240
Query: 898 RKEIP 912
RK P
Sbjct: 241 RKRNP 245
>ref|XP_545451.2| PREDICTED: similar to zinc finger protein 452 [Canis familiaris].
Length = 1327
Score = 169 bits (428), Expect = 3e-42
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Frame = +1
Query: 220 PTPDEEEKILRVKL-EEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQL 396
P +E I+RVK+ EEDP +P E+ RQRFR F YQ++PGPREA+++L
Sbjct: 14 PAAEEHAGIIRVKVKEEDPLWGPEPCLPKGLSHTRELRRQRFRHFCYQETPGPREALTRL 73
Query: 397 RELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESE 576
RELCR WLRPE+H+KEQILEL+VLEQF+ ILP+ELQ WVRE HPE+G+E V VLEDLE E
Sbjct: 74 RELCRRWLRPESHSKEQILELLVLEQFLTILPEELQAWVREQHPESGDEVVAVLEDLERE 133
Query: 577 LDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLR 738
LD+P Q VS + + VEE+ + A+ ++ +VE+ ++ S E H L+
Sbjct: 134 LDEPRQQVSQSTHRPETSVEEMTPLDTAKESLGTQFQSVEDSMECESPEPHPLQ 187
>ref|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 homolog (Zfp-38)
(NY-REN-21 antigen) (Zinc finger and SCAN domain
containing protein 21) [Canis familiaris].
Length = 598
Score = 163 bits (413), Expect = 2e-40
Identities = 92/168 (54%), Positives = 111/168 (66%)
Frame = +1
Query: 220 PTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLR 399
P P + + VK EE EEG LP EVFRQRFRQFGY D+PGPREA+SQLR
Sbjct: 142 PRPPQVRGPVVVKDEE----EEGKC-----LPSLEVFRQRFRQFGYHDTPGPREALSQLR 192
Query: 400 ELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESEL 579
LC WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WV+EH PE+ EEAVT+LEDLE EL
Sbjct: 193 VLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLEQEL 252
Query: 580 DDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWE 723
D+PGQ VS ++ + E+ S + S++ +V K WE
Sbjct: 253 DEPGQQVSSPPSEQQQMWEKKSSSGTVKFPSSTQPQSVVTSHKCEGWE 300
>ref|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (Zinc finger and SCAN
domain containing protein 15) [Canis familiaris].
Length = 491
Score = 160 bits (406), Expect = 1e-39
Identities = 101/211 (47%), Positives = 130/211 (61%), Gaps = 8/211 (3%)
Frame = +1
Query: 226 PDEEEKILRVKLEEDPD------GEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAV 387
P E E ++ VK+EE+ G +G++ E FRQRFRQFGY DS GPREA+
Sbjct: 13 PKEPEGLIIVKVEEENSIWGQDFGRQGNTCSL------ETFRQRFRQFGYSDSAGPREAL 66
Query: 388 SQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDL 567
SQLRELC WLRPE +TKEQILEL+VLEQF+AILP+ELQ W+RE+ PENGEEAVT+LE+L
Sbjct: 67 SQLRELCHQWLRPEVNTKEQILELLVLEQFLAILPEELQAWLREYQPENGEEAVTMLEEL 126
Query: 568 ESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCD 747
E ELD+P Q + + ++ +E+ S + L S +L ENQ K + E +
Sbjct: 127 EKELDEPRQQDT--AHGQGMIWKEMTSIGALKSL-SIQLQPWENQCKSEAQESQTSHR-- 181
Query: 748 DDARTENGALAPKQEIPSAVESHE--APGTL 834
D + L KQEI V S +PG L
Sbjct: 182 DGKLAADKVLTAKQEIIECVASAAMISPGRL 212
>ref|XP_545440.2| PREDICTED: similar to Zinc finger protein Kr18 (HKr18) [Canis
familiaris].
Length = 772
Score = 159 bits (403), Expect = 3e-39
Identities = 87/198 (43%), Positives = 127/198 (64%), Gaps = 1/198 (0%)
Frame = +1
Query: 220 PTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDP-EVFRQRFRQFGYQDSPGPREAVSQL 396
P P+E+E ++ +K E+ + +I NH P E+FRQ FR+ YQD+PGPREA+SQL
Sbjct: 5 PKPEEQEGLVTIKPEDHAWARD--AITANHSPHRRELFRQHFRKLCYQDAPGPREALSQL 62
Query: 397 RELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESE 576
ELCR WLRPE HTKEQIL+L+VLEQF++ILP++LQ WV+ HHP GEEAVTVLEDLE E
Sbjct: 63 WELCRQWLRPEYHTKEQILDLLVLEQFLSILPRDLQAWVQAHHPRTGEEAVTVLEDLERE 122
Query: 577 LDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDA 756
L++P + + ++D L++++ +++L + Q + S E + +
Sbjct: 123 LEEPRKQLPATSERQDTLLDKLTPLGRPHESLTTQLRPKKTQQEQESGE---PQRNGNKT 179
Query: 757 RTENGALAPKQEIPSAVE 810
R ++ AL+ K+ P E
Sbjct: 180 RIKDEALSQKEHRPKDTE 197
>ref|XP_860330.1| PREDICTED: similar to zinc finger protein 36 isoform 2 isoform 3
[Canis familiaris].
Length = 490
Score = 155 bits (392), Expect = 5e-38
Identities = 95/212 (44%), Positives = 136/212 (64%), Gaps = 6/212 (2%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGE----EGSSIPWNHLPDPEVFRQRFR 345
M+A+S E + P E++ I+ VK+EE+ + + + SS+ PDPE+FRQRFR
Sbjct: 2 MTAESREATGLSPQAAP-EKDGIVIVKVEEEDEEDHMWGQDSSLQETPPPDPEIFRQRFR 60
Query: 346 QFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHH 525
F YQ++ GPREA+S+L+ELC WLRPE +TKEQILEL+VLEQF++ILPKELQ W++E+
Sbjct: 61 HFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR 120
Query: 526 PENGEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSEL--DAVEN 699
P++GEEAVT+LEDL ELD GQ V + ++L +V + Q S +L +A ++
Sbjct: 121 PDSGEEAVTLLEDL--ELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQS 178
Query: 700 QLKWASWELHSLRHCDDDARTENGALAPKQEI 795
K +S + L+ + R EN K EI
Sbjct: 179 HFKHSSRKPRLLQSRGCENRNENEESTSKAEI 210
>ref|XP_854334.1| PREDICTED: similar to zinc finger protein 435 [Canis familiaris].
Length = 133
Score = 150 bits (379), Expect = 2e-36
Identities = 74/125 (59%), Positives = 92/125 (73%)
Frame = +1
Query: 226 PDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLREL 405
P+E E +R ++ P GS W+ + E+F QRF+QF Y+++PGPREA+SQL
Sbjct: 3 PEEPEGHIRGNNKKCPAKVPGSGSQWSSPNNQELFHQRFQQFCYKETPGPREALSQLWMF 62
Query: 406 CRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDD 585
C WLRPE HTKEQ+L+L+VLEQF+ ILPKELQ WV E HPE+GEEAV VLEDLE ELD+
Sbjct: 63 CCKWLRPEIHTKEQMLDLLVLEQFLTILPKELQAWVWEQHPESGEEAVAVLEDLEKELDE 122
Query: 586 PGQPV 600
PGQ V
Sbjct: 123 PGQKV 127
>ref|XP_546967.2| PREDICTED: similar to zinc finger protein 36 isoform 1 [Canis
familiaris].
Length = 563
Score = 150 bits (379), Expect = 2e-36
Identities = 88/186 (47%), Positives = 126/186 (67%), Gaps = 6/186 (3%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGE----EGSSIPWNHLPDPEVFRQRFR 345
M+A+S E + P E++ I+ VK+EE+ + + + SS+ PDPE+FRQRFR
Sbjct: 2 MTAESREATGLSPQAAP-EKDGIVIVKVEEEDEEDHMWGQDSSLQETPPPDPEIFRQRFR 60
Query: 346 QFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHH 525
F YQ++ GPREA+S+L+ELC WLRPE +TKEQILEL+VLEQF++ILPKELQ W++E+
Sbjct: 61 HFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR 120
Query: 526 PENGEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSEL--DAVEN 699
P++GEEAVT+LEDL ELD GQ V + ++L +V + Q S +L +A ++
Sbjct: 121 PDSGEEAVTLLEDL--ELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQS 178
Query: 700 QLKWAS 717
K +S
Sbjct: 179 HFKHSS 184
>ref|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (Zinc finger protein
FPM315) [Canis familiaris].
Length = 684
Score = 146 bits (369), Expect = 2e-35
Identities = 80/161 (49%), Positives = 111/161 (68%)
Frame = +1
Query: 220 PTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLR 399
P P + E +L VKLEED + P + P PE RFR+F +Q++ GPREA+S+L+
Sbjct: 5 PGPQDREGLLIVKLEEDCAWSQELP-PSDPGPSPEASHLRFRRFRFQEAAGPREALSRLQ 63
Query: 400 ELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESEL 579
ELC WLRPE TKEQILEL+VLEQF+ ILP+E+Q+ V+E HPE+GEEAVT++ED++ EL
Sbjct: 64 ELCHEWLRPEMRTKEQILELLVLEQFLTILPQEIQSRVQELHPESGEEAVTLVEDMQREL 123
Query: 580 DDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQ 702
V+ RR +VL+EE + E A+ PS +L+ +E +
Sbjct: 124 GRLRLQVTNHRRGTEVLLEEPLPLETARESPSFKLEPMETE 164
>ref|XP_546974.2| PREDICTED: similar to zinc finger protein 95 homolog [Canis
familiaris].
Length = 835
Score = 143 bits (360), Expect = 3e-34
Identities = 83/171 (48%), Positives = 113/171 (66%)
Frame = +1
Query: 223 TPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRE 402
T E+E +L VK+EE E+ + + + P E F QRFR F Y ++ GPREA+SQLR
Sbjct: 18 TSQEQEDLLIVKVEE----EDCTWMQEYNPPVFETFYQRFRHFQYHEASGPREALSQLRV 73
Query: 403 LCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELD 582
LC WLRPE HTKEQILEL+VLEQF+ ILP+E QTWVREHHPE+GEEAV V+E+++ EL+
Sbjct: 74 LCCEWLRPELHTKEQILELLVLEQFLTILPEEFQTWVREHHPESGEEAVAVVENIQRELE 133
Query: 583 DPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSL 735
+ Q + + +VL +++V Q S +L +VE Q + + H L
Sbjct: 134 ERRQQIVV---CPEVLPQKMVPPGVVQESLSHQLLSVEPQSEQEPQKPHIL 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,243,697
Number of extensions: 959290
Number of successful extensions: 3730
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 3723
Number of HSP's successfully gapped: 61
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003272
(918 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008896.2| zinc finger protein 24 [Homo sapiens]. 479 e-135
Alignment gi|NP_665699.1| zinc finger protein 396 [Homo sapiens]. 224 7e-59
Alignment gi|NP_001012458.1| zinc finger and SCAN domain-containing prote... 201 1e-51
Alignment gi|NP_001230170.1| zinc finger protein 323 isoform 1 [Homo sapi... 191 8e-49
Alignment gi|NP_112161.3| zinc finger protein 323 isoform 1 [Homo sapiens]. 191 8e-49
Alignment gi|NP_001128688.1| zinc finger protein 323 isoform 1 [Homo sapi... 191 8e-49
Alignment gi|NP_001156863.1| zinc finger and SCAN domain-containing prote... 181 1e-45
Alignment gi|NP_443155.1| SCAN domain-containing protein 3 [Homo sapiens]. 179 3e-45
Alignment gi|NP_666019.1| zinc finger and SCAN domain-containing protein ... 170 2e-42
Alignment gi|NP_079507.1| zinc finger and SCAN domain-containing protein ... 169 3e-42
>ref|NP_008896.2| zinc finger protein 24 [Homo sapiens].
Length = 368
Score = 479 bits (1233), Expect = e-135
Identities = 231/245 (94%), Positives = 239/245 (97%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 357
MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPE+FRQRFRQFGY
Sbjct: 1 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEIFRQRFRQFGY 60
Query: 358 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 537
QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVR+HHPENG
Sbjct: 61 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHHPENG 120
Query: 538 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 717
EEAVTVLEDLESELDDPGQPVSLRRRKR+VLVE++VSQEEAQGLPSSELDAVENQLKWAS
Sbjct: 121 EEAVTVLEDLESELDDPGQPVSLRRRKREVLVEDMVSQEEAQGLPSSELDAVENQLKWAS 180
Query: 718 WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE 897
WELHSLRHCDDD RTENGALAPKQE+PSA+ESHE PGTLN+GV QIFKYGE CFPKGRFE
Sbjct: 181 WELHSLRHCDDDGRTENGALAPKQELPSALESHEVPGTLNMGVPQIFKYGETCFPKGRFE 240
Query: 898 RKEIP 912
RK P
Sbjct: 241 RKRNP 245
>ref|NP_665699.1| zinc finger protein 396 [Homo sapiens].
Length = 333
Score = 224 bits (572), Expect = 7e-59
Identities = 130/252 (51%), Positives = 166/252 (65%), Gaps = 6/252 (2%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEE-----DPDGEEGSSIPWNHLPDPEVFRQRF 342
MSA+ + + S L+ T +E IL K+EE DPD SS+ W+ PE FRQ+F
Sbjct: 1 MSAK-LGKSSSLLTQTSEECNGILTEKMEEEEQTCDPD----SSLHWSSSYSPETFRQQF 55
Query: 343 RQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREH 522
RQFGYQDSPGP EA+S+L ELC LWLRPE HTKEQILEL+VLEQF+AILPKELQ WV++H
Sbjct: 56 RQFGYQDSPGPHEALSRLWELCHLWLRPEVHTKEQILELLVLEQFLAILPKELQAWVQKH 115
Query: 523 HPENGEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQ 702
HPENGEE VT+LED+E ELD P Q + RRK D++ E++ E + LPSS+L V+ Q
Sbjct: 116 HPENGEETVTMLEDVERELDGPKQ-IFFGRRK-DMIAEKLAPSEITEELPSSQLMPVKKQ 173
Query: 703 LKWASWELHSLRHCDDDARTENGALAPKQEIPSAVESH-EAPGTLNIGVSQIFKYGEACF 879
L+ ASWEL SLR D+D +T N A +Q+ +E H L++ SQ Y
Sbjct: 174 LQGASWELQSLRPHDEDIKTTNVKSASRQKTSLGIELHCNVSNILHMNGSQSSTYRGTYE 233
Query: 880 PKGRFERKEIPP 915
GRFE+++ P
Sbjct: 234 QDGRFEKRQGNP 245
>ref|NP_001012458.1| zinc finger and SCAN domain-containing protein 23 [Homo sapiens].
Length = 389
Score = 201 bits (510), Expect = 1e-51
Identities = 111/238 (46%), Positives = 156/238 (65%), Gaps = 5/238 (2%)
Frame = +1
Query: 211 LIIPTPDEEEKILRVKLEEDPD----GEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPR 378
L + T + +E +L VK++E+ + G E S + N+ E+FR+RFRQF YQ+SPGPR
Sbjct: 5 LTLQTAEMQEGLLAVKVKEEEEEHSCGPE-SGLSRNNPHTREIFRRRFRQFCYQESPGPR 63
Query: 379 EAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVL 558
EA+ +L+ELC WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WVR+H P +GEEAVTVL
Sbjct: 64 EALQRLQELCHQWLRPEMHTKEQILELLVLEQFLTILPEELQAWVRQHRPVSGEEAVTVL 123
Query: 559 EDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLR 738
EDLE ELDDPG+ V +++ V+E + AQ + + +E QL + E+ ++
Sbjct: 124 EDLERELDDPGEQVLSHAHEQEEFVKEKATPGAAQESSNDQFQTLEEQLGYNLREVCPVQ 183
Query: 739 HCDDDARTENGALAPKQEIPSAVES-HEAPGTLNIGVSQIFKYGEACFPKGRFERKEI 909
D A T N LAPK+EI V+S + G N ++QI +YG+ C +GR E++ +
Sbjct: 184 EIDGKAGTWNVELAPKREISQEVKSLIQVLGKQNGNITQIPEYGDTCDREGRLEKQRV 241
>ref|NP_001230170.1| zinc finger protein 323 isoform 1 [Homo sapiens].
Length = 406
Score = 191 bits (485), Expect = 8e-49
Identities = 106/227 (46%), Positives = 143/227 (62%), Gaps = 1/227 (0%)
Frame = +1
Query: 229 DEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELC 408
+E+ + VK+EEDP ++ + + N+ E RQ FRQF YQ++PGPREA+S+LRELC
Sbjct: 5 EEQYDLKIVKVEEDPIWDQETHLRGNNFSGQEASRQLFRQFCYQETPGPREALSRLRELC 64
Query: 409 RLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDP 588
WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WVREHHPE+GEEAV V+EDLE EL +P
Sbjct: 65 HQWLRPEIHTKEQILELLVLEQFLTILPEELQAWVREHHPESGEEAVAVVEDLEQELSEP 124
Query: 589 G-QPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDARTE 765
G Q +VL+E++ + Q +L + QL++ S+ LH + D ++ E
Sbjct: 125 GNQAPDHEHGHSEVLLEDVEHLKVKQEPTDIQLQPMVTQLRYESFCLHQFQEQDGESIPE 184
Query: 766 NGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFERKE 906
N LA KQEI +E H L VS KY E C + E+++
Sbjct: 185 NQELASKQEILKEME-HLGDSKLQRDVSLDSKYRETCKRDSKAEKQQ 230
>ref|NP_112161.3| zinc finger protein 323 isoform 1 [Homo sapiens].
Length = 406
Score = 191 bits (485), Expect = 8e-49
Identities = 106/227 (46%), Positives = 143/227 (62%), Gaps = 1/227 (0%)
Frame = +1
Query: 229 DEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELC 408
+E+ + VK+EEDP ++ + + N+ E RQ FRQF YQ++PGPREA+S+LRELC
Sbjct: 5 EEQYDLKIVKVEEDPIWDQETHLRGNNFSGQEASRQLFRQFCYQETPGPREALSRLRELC 64
Query: 409 RLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDP 588
WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WVREHHPE+GEEAV V+EDLE EL +P
Sbjct: 65 HQWLRPEIHTKEQILELLVLEQFLTILPEELQAWVREHHPESGEEAVAVVEDLEQELSEP 124
Query: 589 G-QPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDARTE 765
G Q +VL+E++ + Q +L + QL++ S+ LH + D ++ E
Sbjct: 125 GNQAPDHEHGHSEVLLEDVEHLKVKQEPTDIQLQPMVTQLRYESFCLHQFQEQDGESIPE 184
Query: 766 NGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFERKE 906
N LA KQEI +E H L VS KY E C + E+++
Sbjct: 185 NQELASKQEILKEME-HLGDSKLQRDVSLDSKYRETCKRDSKAEKQQ 230
>ref|NP_001128688.1| zinc finger protein 323 isoform 1 [Homo sapiens].
Length = 406
Score = 191 bits (485), Expect = 8e-49
Identities = 106/227 (46%), Positives = 143/227 (62%), Gaps = 1/227 (0%)
Frame = +1
Query: 229 DEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELC 408
+E+ + VK+EEDP ++ + + N+ E RQ FRQF YQ++PGPREA+S+LRELC
Sbjct: 5 EEQYDLKIVKVEEDPIWDQETHLRGNNFSGQEASRQLFRQFCYQETPGPREALSRLRELC 64
Query: 409 RLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDP 588
WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WVREHHPE+GEEAV V+EDLE EL +P
Sbjct: 65 HQWLRPEIHTKEQILELLVLEQFLTILPEELQAWVREHHPESGEEAVAVVEDLEQELSEP 124
Query: 589 G-QPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDARTE 765
G Q +VL+E++ + Q +L + QL++ S+ LH + D ++ E
Sbjct: 125 GNQAPDHEHGHSEVLLEDVEHLKVKQEPTDIQLQPMVTQLRYESFCLHQFQEQDGESIPE 184
Query: 766 NGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFERKE 906
N LA KQEI +E H L VS KY E C + E+++
Sbjct: 185 NQELASKQEILKEME-HLGDSKLQRDVSLDSKYRETCKRDSKAEKQQ 230
>ref|NP_001156863.1| zinc finger and SCAN domain-containing protein 12 [Homo sapiens].
Length = 611
Score = 181 bits (458), Expect = 1e-45
Identities = 98/196 (50%), Positives = 134/196 (68%), Gaps = 1/196 (0%)
Frame = +1
Query: 232 EEEKILRVKLEEDP-DGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELC 408
++++ L VK+EE+ + + N+ EVFRQ FRQF YQ++ GPREA+S+LRELC
Sbjct: 12 DQDEPLEVKIEEEKYTTRQDWDLRKNNTHSREVFRQYFRQFCYQETSGPREALSRLRELC 71
Query: 409 RLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDP 588
WLRPETHTKEQILEL+VLEQF+ ILP+ELQ WV+E HPE+GEE VTVLEDLE ELD+P
Sbjct: 72 HQWLRPETHTKEQILELLVLEQFLTILPEELQAWVQEQHPESGEEVVTVLEDLERELDEP 131
Query: 589 GQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDARTEN 768
G+ VS+ ++++ ++E V + +G PS L +++ Q K+ S EL S + D T N
Sbjct: 132 GEQVSVHTGEQEMFLQETVRLRK-EGEPSMSLQSMKAQPKYESPELESQQEQVLDVETGN 190
Query: 769 GALAPKQEIPSAVESH 816
KQE+ +E H
Sbjct: 191 EYGNLKQEVSEEMEPH 206
>ref|NP_443155.1| SCAN domain-containing protein 3 [Homo sapiens].
Length = 1325
Score = 179 bits (454), Expect = 3e-45
Identities = 92/172 (53%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Frame = +1
Query: 226 PDEEEKILRVKL-EEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRE 402
P+E+ +I++VK+ EED ++ S++ N E+ RQRFRQF YQ++PGPREA+SQLRE
Sbjct: 16 PEEQGEIIKVKVKEEDHTWDQESALRRNLSYTRELSRQRFRQFCYQETPGPREALSQLRE 75
Query: 403 LCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELD 582
LCR WL PE HTKEQILEL+VLEQF+ ILP+ELQ+WVREH+PE+GEE VT+LEDLE ELD
Sbjct: 76 LCRQWLNPEIHTKEQILELLVLEQFLTILPEELQSWVREHNPESGEEVVTLLEDLERELD 135
Query: 583 DPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLR 738
+P Q VS ++V +EE++ + A+ ++L ++E++++ S E H L+
Sbjct: 136 EPRQQVSQGTYGQEVSMEEMIPLDSAKESLGTQLQSMEDRMECESPEPHPLQ 187
>ref|NP_666019.1| zinc finger and SCAN domain-containing protein 21 [Homo sapiens].
Length = 473
Score = 170 bits (430), Expect = 2e-42
Identities = 94/166 (56%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Frame = +1
Query: 226 PDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLREL 405
P E+ L VK+EE E+G +LP E+FRQRFRQFGY D+PGPREA+SQLR L
Sbjct: 17 PQEQVGPLMVKVEEKE--EKGK-----YLPSLEMFRQRFRQFGYHDTPGPREALSQLRVL 69
Query: 406 CRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDD 585
C WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WV+EH PE+ EEAVT+LEDLE ELD+
Sbjct: 70 CCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLERELDE 129
Query: 586 PGQPVSLRRRKRDVLVEEIVSQEEAQGLPSS-ELDAVENQLKWASW 720
PG VS ++ + E+I S A+ PSS + +E K+ SW
Sbjct: 130 PGHQVSTPPNEQKPVWEKISSSGTAKESPSSMQPQPLETSHKYESW 175
>ref|NP_079507.1| zinc finger and SCAN domain-containing protein 16 [Homo sapiens].
Length = 348
Score = 169 bits (428), Expect = 3e-42
Identities = 91/195 (46%), Positives = 129/195 (66%)
Frame = +1
Query: 226 PDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLREL 405
P++++ +L +K E+ G++ SS + E++RQ FR+ YQD+PGPREA++QL EL
Sbjct: 7 PEDQKGLLIIKAEDHYWGQDSSSQKCSP-HRRELYRQHFRKLCYQDAPGPREALTQLWEL 65
Query: 406 CRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDD 585
CR WLRPE HTKEQIL+L+VLEQF++ILPK+LQ WVR HHPE GEEAVTVLEDLE ELD+
Sbjct: 66 CRQWLRPECHTKEQILDLLVLEQFLSILPKDLQAWVRAHHPETGEEAVTVLEDLERELDE 125
Query: 586 PGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDARTE 765
PG+ V +RD+L++++ + +L + QL+ E + D RT+
Sbjct: 126 PGKQVPGNSERRDILMDKLAPLGRPYESLTVQLHPKKTQLE---QEAGKPQRNGDKTRTK 182
Query: 766 NGALAPKQEIPSAVE 810
N L K+++P E
Sbjct: 183 NEELFQKEDMPKDKE 197
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,520,782
Number of extensions: 944705
Number of successful extensions: 3795
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 3764
Number of HSP's successfully gapped: 81
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003272
(918 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067534.2| zinc finger protein 24 [Mus musculus]. 466 e-132
Alignment gi|NP_001038170.1| zinc finger and SCAN domain-containing prote... 162 3e-40
Alignment gi|NP_001038169.1| zinc finger and SCAN domain-containing prote... 162 3e-40
Alignment gi|NP_001038168.1| zinc finger and SCAN domain-containing prote... 162 3e-40
Alignment gi|NP_035887.2| zinc finger and SCAN domain-containing protein ... 162 3e-40
Alignment gi|NP_001139250.1| zinc finger protein with KRAB and SCAN domai... 152 5e-37
Alignment gi|NP_076174.3| zinc finger protein with KRAB and SCAN domains ... 152 5e-37
Alignment gi|NP_081283.2| zinc finger protein 397 [Mus musculus]. 151 6e-37
Alignment gi|NP_001034204.1| zinc finger protein with KRAB and SCAN domai... 148 7e-36
Alignment gi|NP_631880.2| zinc finger protein 192 [Mus musculus]. 147 9e-36
>ref|NP_067534.2| zinc finger protein 24 [Mus musculus].
Length = 368
Score = 466 bits (1200), Expect = e-132
Identities = 228/245 (93%), Positives = 233/245 (95%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 357
MSAQSVEEDSILIIP PDEEEKILRVKLEEDPDGEEGSSI WNHLPDPEVFRQRFRQFGY
Sbjct: 1 MSAQSVEEDSILIIPNPDEEEKILRVKLEEDPDGEEGSSISWNHLPDPEVFRQRFRQFGY 60
Query: 358 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 537
QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG
Sbjct: 61 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 120
Query: 538 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 717
EEAV VLEDLESELDDPGQPVSLRR+KR+VLVEEI SQE+AQGLPSSELDAVENQLKWAS
Sbjct: 121 EEAVAVLEDLESELDDPGQPVSLRRQKREVLVEEITSQEDAQGLPSSELDAVENQLKWAS 180
Query: 718 WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE 897
WELHSLRHCDDDA TENGALAPKQE+ SA ESHE PGTLNIGV Q+FKYGE CFPKGRFE
Sbjct: 181 WELHSLRHCDDDATTENGALAPKQEMASAGESHEGPGTLNIGVPQLFKYGETCFPKGRFE 240
Query: 898 RKEIP 912
RK P
Sbjct: 241 RKRNP 245
>ref|NP_001038170.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 162 bits (411), Expect = 3e-40
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Frame = +1
Query: 253 VKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPET 432
+K EED + ++G P PE+ RQRFRQFGY D+PGPREA+SQLR LC WL+PE
Sbjct: 103 IKAEEDDEKDKGH-------PSPEISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEI 155
Query: 433 HTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRR 612
HTKEQILEL+VLEQF+ ILP+ELQTWV++H PE+ EEAVT+LEDLE ELD+PG VS
Sbjct: 156 HTKEQILELLVLEQFLTILPRELQTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPP 215
Query: 613 RKRDVLVEEIVSQEEA-QGLPSSELDAVENQLKWASW 720
++ E++ + A + L S+E V+ K+ W
Sbjct: 216 NEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYEFW 252
>ref|NP_001038169.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 162 bits (411), Expect = 3e-40
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Frame = +1
Query: 253 VKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPET 432
+K EED + ++G P PE+ RQRFRQFGY D+PGPREA+SQLR LC WL+PE
Sbjct: 103 IKAEEDDEKDKGH-------PSPEISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEI 155
Query: 433 HTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRR 612
HTKEQILEL+VLEQF+ ILP+ELQTWV++H PE+ EEAVT+LEDLE ELD+PG VS
Sbjct: 156 HTKEQILELLVLEQFLTILPRELQTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPP 215
Query: 613 RKRDVLVEEIVSQEEA-QGLPSSELDAVENQLKWASW 720
++ E++ + A + L S+E V+ K+ W
Sbjct: 216 NEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYEFW 252
>ref|NP_001038168.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 162 bits (411), Expect = 3e-40
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Frame = +1
Query: 253 VKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPET 432
+K EED + ++G P PE+ RQRFRQFGY D+PGPREA+SQLR LC WL+PE
Sbjct: 103 IKAEEDDEKDKGH-------PSPEISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEI 155
Query: 433 HTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRR 612
HTKEQILEL+VLEQF+ ILP+ELQTWV++H PE+ EEAVT+LEDLE ELD+PG VS
Sbjct: 156 HTKEQILELLVLEQFLTILPRELQTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPP 215
Query: 613 RKRDVLVEEIVSQEEA-QGLPSSELDAVENQLKWASW 720
++ E++ + A + L S+E V+ K+ W
Sbjct: 216 NEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYEFW 252
>ref|NP_035887.2| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 162 bits (411), Expect = 3e-40
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Frame = +1
Query: 253 VKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPET 432
+K EED + ++G P PE+ RQRFRQFGY D+PGPREA+SQLR LC WL+PE
Sbjct: 103 IKAEEDDEKDKGH-------PSPEISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEI 155
Query: 433 HTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRR 612
HTKEQILEL+VLEQF+ ILP+ELQTWV++H PE+ EEAVT+LEDLE ELD+PG VS
Sbjct: 156 HTKEQILELLVLEQFLTILPRELQTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPP 215
Query: 613 RKRDVLVEEIVSQEEA-QGLPSSELDAVENQLKWASW 720
++ E++ + A + L S+E V+ K+ W
Sbjct: 216 NEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYEFW 252
>ref|NP_001139250.1| zinc finger protein with KRAB and SCAN domains 3 [Mus musculus].
Length = 553
Score = 152 bits (383), Expect = 5e-37
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 7/200 (3%)
Frame = +1
Query: 184 AQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQD 363
A+ E + L + +++ ++L +K+E++ W P P+ RQRFR F Y +
Sbjct: 2 ARESRESTTLDSHSAEDQMELLVIKVEQEEASPLAEETSWLGSPGPDRSRQRFRAFRYPE 61
Query: 364 SPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEE 543
+ GPR+A+S+LRELCR WLRP+ H+KEQILEL+VLEQF+ ILP ELQ WVRE HP++GEE
Sbjct: 62 AAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGEE 121
Query: 544 AVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASW- 720
V +LE L+ +LDD V +++L + V AQG SS+++ VE LK S
Sbjct: 122 VVALLEYLDRQLDDTPPQVPDDDDGQELLCSKAVLLTSAQGSESSQMEPVEPLLKQESLG 181
Query: 721 ------ELHSLRHCDDDART 762
+ + HC +D T
Sbjct: 182 SLPSEVRVTHVGHCGEDGVT 201
>ref|NP_076174.3| zinc finger protein with KRAB and SCAN domains 3 [Mus musculus].
Length = 553
Score = 152 bits (383), Expect = 5e-37
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 7/200 (3%)
Frame = +1
Query: 184 AQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQD 363
A+ E + L + +++ ++L +K+E++ W P P+ RQRFR F Y +
Sbjct: 2 ARESRESTTLDSHSAEDQMELLVIKVEQEEASPLAEETSWLGSPGPDRSRQRFRAFRYPE 61
Query: 364 SPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEE 543
+ GPR+A+S+LRELCR WLRP+ H+KEQILEL+VLEQF+ ILP ELQ WVRE HP++GEE
Sbjct: 62 AAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGEE 121
Query: 544 AVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASW- 720
V +LE L+ +LDD V +++L + V AQG SS+++ VE LK S
Sbjct: 122 VVALLEYLDRQLDDTPPQVPDDDDGQELLCSKAVLLTSAQGSESSQMEPVEPLLKQESLG 181
Query: 721 ------ELHSLRHCDDDART 762
+ + HC +D T
Sbjct: 182 SLPSEVRVTHVGHCGEDGVT 201
>ref|NP_081283.2| zinc finger protein 397 [Mus musculus].
Length = 527
Score = 151 bits (382), Expect = 6e-37
Identities = 82/185 (44%), Positives = 120/185 (64%), Gaps = 8/185 (4%)
Frame = +1
Query: 190 SVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDP--------EVFRQRFR 345
+VE +I + D +E+++ VK+E+ SS W+ E+FRQ+FR
Sbjct: 2 AVESRAISTLKPQDHQEELILVKIED-------SSFSWSQKCKQNGSAQSCQELFRQQFR 54
Query: 346 QFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHH 525
+F Y ++PGPREA+ +L+ELC WL PE HTKEQILEL+VLEQF++ILP+EL+ WV++H
Sbjct: 55 KFCYHETPGPREALGRLQELCHQWLMPELHTKEQILELLVLEQFLSILPEELKIWVQQHG 114
Query: 526 PENGEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQL 705
P++GEEAVT+LEDLE E DDPGQ V + V +++ + +Q S ++ ++ QL
Sbjct: 115 PKSGEEAVTLLEDLEKEFDDPGQQVPDNLQGPSVSWKDLTYLKTSQDSTSIQVRPLKTQL 174
Query: 706 KWASW 720
K SW
Sbjct: 175 K--SW 177
>ref|NP_001034204.1| zinc finger protein with KRAB and SCAN domains 4 [Mus musculus].
Length = 480
Score = 148 bits (373), Expect = 7e-36
Identities = 83/182 (45%), Positives = 114/182 (62%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 357
++A+S EE + L++ ++EE P EE S W P P+ RQRFR F Y
Sbjct: 11 LNARSAEEGTGLLVVKVEQEEA--------SPLAEETS---WLGSPGPDRSRQRFRAFRY 59
Query: 358 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 537
++ GPR+A+S+LRELCR WLRP+ H+KEQILEL+VLEQF+ ILP ELQTWVRE HP++G
Sbjct: 60 PEAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQTWVREQHPDSG 119
Query: 538 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 717
EE V +LE L+ +LDD VS R++L ++ +Q SS A+++ K S
Sbjct: 120 EEVVALLEYLDRQLDDTPPQVSTGEWSRELLCCKVAVVTPSQDSQSSHCQAMKSLFKHES 179
Query: 718 WE 723
E
Sbjct: 180 QE 181
>ref|NP_631880.2| zinc finger protein 192 [Mus musculus].
Length = 588
Score = 147 bits (372), Expect = 9e-36
Identities = 77/158 (48%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
Frame = +1
Query: 226 PDE--EEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLR 399
PD+ EE ++ VK+EED +E S + N+ P E+FR RFRQ YQ++ GPREA+ QLR
Sbjct: 15 PDQAPEEDLVIVKIEEDHGWDEESGVHENNTPGQELFRLRFRQLCYQETLGPREALIQLR 74
Query: 400 ELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESEL 579
C WLRP+ ++KEQILEL+VLEQF+ ILP ELQ V+EH +NGEE VT+LEDLE ++
Sbjct: 75 AFCHQWLRPDLNSKEQILELLVLEQFLTILPGELQALVKEHQLQNGEEVVTLLEDLERQI 134
Query: 580 DDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAV 693
+ G+PVS VL +E++ + A PS + ++
Sbjct: 135 NVLGRPVSTHTHGHRVLWDEVIPSKSASEPPSIHVQSL 172
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,104,792
Number of extensions: 790004
Number of successful extensions: 3016
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 3006
Number of HSP's successfully gapped: 46
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003272
(918 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230304.1| zinc finger protein 24 [Sus scrofa]. 494 e-140
Alignment gi|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-conta... 183 1e-46
Alignment gi|XP_003356632.1| PREDICTED: zinc finger and SCAN domain-conta... 182 2e-46
Alignment gi|XP_003356453.1| PREDICTED: zinc finger protein 396-like [Sus... 177 6e-45
Alignment gi|XP_003356634.1| PREDICTED: zinc finger protein 323 [Sus scro... 175 3e-44
Alignment gi|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-... 172 2e-43
Alignment gi|XP_001928110.1| PREDICTED: zinc finger and SCAN domain-conta... 166 2e-41
Alignment gi|XP_003127945.1| PREDICTED: zinc finger and SCAN domain-conta... 157 1e-38
Alignment gi|XP_003127944.2| PREDICTED: zinc finger protein 397-like [Sus... 155 4e-38
Alignment gi|XP_003354517.1| PREDICTED: zinc finger protein with KRAB and... 148 4e-36
>ref|NP_001230304.1| zinc finger protein 24 [Sus scrofa].
Length = 368
Score = 494 bits (1272), Expect = e-140
Identities = 243/245 (99%), Positives = 243/245 (99%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 357
MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY
Sbjct: 1 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGY 60
Query: 358 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 537
QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG
Sbjct: 61 QDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENG 120
Query: 538 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 717
EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS
Sbjct: 121 EEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWAS 180
Query: 718 WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE 897
WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE
Sbjct: 181 WELHSLRHCDDDARTENGALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFE 240
Query: 898 RKEIP 912
RK P
Sbjct: 241 RKRNP 245
>ref|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-containing protein 23-like
isoform 1 [Sus scrofa].
Length = 389
Score = 183 bits (465), Expect = 1e-46
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 6/239 (2%)
Frame = +1
Query: 211 LIIPTPDEEEKILRVKLEEDPDG-----EEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGP 375
L + TP+ + ++ VK++E+ E G S H E+FR+RFRQF YQ++PGP
Sbjct: 5 LALQTPEMQGGLIAVKVKEEEKDHACGQESGQSRDNPHTR--EIFRRRFRQFCYQETPGP 62
Query: 376 REAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTV 555
REA+ +L+ELC WLRPE H+KEQILEL+VLEQF+ ILP+ELQ WVREH P +GEEAVTV
Sbjct: 63 REALRRLQELCHQWLRPEMHSKEQILELLVLEQFLTILPEELQAWVREHRPGSGEEAVTV 122
Query: 556 LEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSL 735
LEDLE ELD+PG+ V R ++ V+ AQ S + +E Q + EL
Sbjct: 123 LEDLERELDEPGEQVPTRDHVQEEPVKGKTILGAAQESSSGQHQTLEEQSQCNLEELCPA 182
Query: 736 RHCDDDARTENGALAPKQEIPSAVES-HEAPGTLNIGVSQIFKYGEACFPKGRFERKEI 909
+ DD A T N LAPK+E+ ++ E LN + ++ + GE C +GR ER+ +
Sbjct: 183 QETDDKAGTWNAELAPKRELSKEMKPLVEVTEKLNGDIIRMPECGETCEHEGRLERQRV 241
>ref|XP_003356632.1| PREDICTED: zinc finger and SCAN domain-containing protein 12-like
[Sus scrofa].
Length = 611
Score = 182 bits (463), Expect = 2e-46
Identities = 105/242 (43%), Positives = 148/242 (61%), Gaps = 11/242 (4%)
Frame = +1
Query: 205 SILIIPTPDEEEKILRVKLEEDPDGEE--------GSSIPWNHLPDPEVFRQRFRQFGYQ 360
SI I +++++L VK+EE+ D +E ++ N+ EVFRQ FR F YQ
Sbjct: 4 SIWAIQAHKDQDELLEVKVEEEEDVKEEHKYTTRQDQNLQKNNTHSREVFRQHFRHFCYQ 63
Query: 361 DSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGE 540
++ GPREA+S+LRELC WLRPETHTKEQILEL+VLEQF+ ILP+ELQ WV+E HPE+GE
Sbjct: 64 ETSGPREALSRLRELCHQWLRPETHTKEQILELLVLEQFLTILPEELQAWVQEQHPESGE 123
Query: 541 EAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASW 720
E VTVLE LE ELD+PG VS+ ++++ ++E+ Q P L +V+ QLK S
Sbjct: 124 EVVTVLEALERELDEPGYQVSVHTEEQEMFLQEVAPLGSEQE-PGMSLPSVKVQLKCESP 182
Query: 721 ELHSLRH--CDDDARTENGALAPKQEIPSAVESH-EAPGTLNIGVSQIFKYGEACFPKGR 891
+L + + D D E L PKQE+ ++S+ ++Q Y + C P+ +
Sbjct: 183 DLEAQQEQVSDVDTGNEYRNLTPKQEVSEEMKSYGNISSKFENEIAQSTGYEKTCEPQEK 242
Query: 892 FE 897
E
Sbjct: 243 TE 244
>ref|XP_003356453.1| PREDICTED: zinc finger protein 396-like [Sus scrofa].
Length = 336
Score = 177 bits (450), Expect = 6e-45
Identities = 106/245 (43%), Positives = 150/245 (61%), Gaps = 2/245 (0%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGEEG-SSIPWNHLPDPEVFRQRFRQFG 354
MSA+ + + S L++ T ++ + IL K+EE SS W+ E +RQRFRQF
Sbjct: 1 MSAK-LRDSSKLLLQTSEDPDCILVTKMEERGQAHNMVSSRHWSSYYSSETYRQRFRQFD 59
Query: 355 YQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPEN 534
YQ+SPGPREA+S+LRELC WLRPE H+KEQILEL+VLEQF+A+LP ELQTW +E+ P +
Sbjct: 60 YQESPGPREALSRLRELCCQWLRPEVHSKEQILELLVLEQFLAMLPAELQTWFQENRPGS 119
Query: 535 GEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWA 714
GEEAV +LE+LE E D + + L +K D+L + + + E P S+L ++ L WA
Sbjct: 120 GEEAVVMLEELEKEHDGAAKQICL-GQKEDLLAKTLPAYEITPETPQSQLKPMKQPL-WA 177
Query: 715 SWELHSLRHCDDDARTENGALAPKQEIPSAVE-SHEAPGTLNIGVSQIFKYGEACFPKGR 891
S +L SLR D D++T N + +Q S E + + + SQ F + C
Sbjct: 178 SKKLQSLRQNDKDSKTVN--VKSRQNTSSGTELYYRVSNSPQMNASQSFTFRGTCEQDRN 235
Query: 892 FERKE 906
FER++
Sbjct: 236 FERRQ 240
>ref|XP_003356634.1| PREDICTED: zinc finger protein 323 [Sus scrofa].
Length = 438
Score = 175 bits (444), Expect = 3e-44
Identities = 101/229 (44%), Positives = 135/229 (58%), Gaps = 1/229 (0%)
Frame = +1
Query: 232 EEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLRELCR 411
E++ + VK+EEDP + + + + E RQ FR F YQ++PGPREA+S+LRELC
Sbjct: 6 EQDGLKIVKVEEDPVWNQETYLQESSFSGQEASRQLFRHFCYQETPGPREALSRLRELCH 65
Query: 412 LWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDDP- 588
WLRP+THTKEQILEL+VLEQF+ ILP+ELQ WVREHHPE+GEEAV +EDLE EL +P
Sbjct: 66 QWLRPDTHTKEQILELLVLEQFLTILPEELQAWVREHHPESGEEAVAAVEDLERELSEPE 125
Query: 589 GQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDARTEN 768
Q +VL + V + Q +++L ++ QLK+ S+ L D + EN
Sbjct: 126 NQAPDCEHGHSEVLSGDAVHLKAKQESAATQLQSMVTQLKYESFGPQKLGEQDGETILEN 185
Query: 769 GALAPKQEIPSAVESHEAPGTLNIGVSQIFKYGEACFPKGRFERKEIPP 915
L KQE+ + H L V KY EAC + R E + P
Sbjct: 186 KDLVSKQEVLKEM-GHFENSRLQRDVPLDSKYREACKRENRVENQRGHP 233
>ref|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-like [Sus scrofa].
Length = 1323
Score = 172 bits (437), Expect = 2e-43
Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 1/171 (0%)
Frame = +1
Query: 229 DEEEKILRVKL-EEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLREL 405
+E+ +I++VK+ EED ++ S I N E+ RQRFRQ YQ++PGPREA+SQLREL
Sbjct: 17 EEQGEIIKVKVKEEDHIWDQESCIQKNLSHTRELSRQRFRQLCYQETPGPREALSQLREL 76
Query: 406 CRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESELDD 585
CR WL PE HTKEQILEL+VLEQ + ILP+ELQ WVREHHPE+GEE VTVLEDLE ELD+
Sbjct: 77 CRQWLSPEIHTKEQILELLVLEQLLTILPEELQAWVREHHPESGEEVVTVLEDLERELDE 136
Query: 586 PGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLR 738
P Q V ++V VEE+ +E+ G+ L ++E++++ S E H L+
Sbjct: 137 PRQQVPQATYGQEVPVEEMTPAKESLGI---HLQSIEDRMECESPEPHPLQ 184
>ref|XP_001928110.1| PREDICTED: zinc finger and SCAN domain-containing protein 21-like
[Sus scrofa].
Length = 469
Score = 166 bits (419), Expect = 2e-41
Identities = 88/167 (52%), Positives = 113/167 (67%)
Frame = +1
Query: 220 PTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQLR 399
PTP +E+ + VK+EE+ G+ E+FRQRFRQFGY D+PGPREA+SQLR
Sbjct: 14 PTPPQEQGPVIVKVEEEEKGKR-----------LEMFRQRFRQFGYHDTPGPREALSQLR 62
Query: 400 ELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESEL 579
LC WLRPE HTKEQILEL+VLEQF+ ILP+ELQ WV+EH PE+ EEAVT+LEDLE EL
Sbjct: 63 VLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLEREL 122
Query: 580 DDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASW 720
D+P Q S R++ E + S + L S + A++ ++ SW
Sbjct: 123 DEPAQQASPPPREQSQSWETMSSGTTKESLSSPQPQALKTGHQYESW 169
>ref|XP_003127945.1| PREDICTED: zinc finger and SCAN domain-containing protein 30 [Sus
scrofa].
Length = 492
Score = 157 bits (396), Expect = 1e-38
Identities = 94/193 (48%), Positives = 129/193 (66%), Gaps = 2/193 (1%)
Frame = +1
Query: 223 TPDEEEKILRVKLEEDPD--GEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQL 396
TP E+E ++ VK+EE+ G++ +P N + FRQRFRQFGY DS GPREA+S+L
Sbjct: 12 TPKEQEGLIIVKVEEENYVWGQD-LGLPGNACSQ-DAFRQRFRQFGYSDSAGPREALSRL 69
Query: 397 RELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESE 576
RELC LWLRPE H+KEQILEL+VLEQF+AILP+ELQTW+ E+ PE+GEEAV +LE+LE E
Sbjct: 70 RELCCLWLRPEVHSKEQILELLVLEQFLAILPEELQTWLLENRPESGEEAVVMLEELEKE 129
Query: 577 LDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLKWASWELHSLRHCDDDA 756
LD+P Q + + ++ +E+ S + L S +L +ENQ K + E + D +
Sbjct: 130 LDEPRQQDT--AHAQGMMWKEMTSVGALKSL-SVQLQPLENQHKSETQEPQAFSERDGNL 186
Query: 757 RTENGALAPKQEI 795
+ L KQ+I
Sbjct: 187 VADK-VLKAKQDI 198
>ref|XP_003127944.2| PREDICTED: zinc finger protein 397-like [Sus scrofa].
Length = 534
Score = 155 bits (391), Expect = 4e-38
Identities = 79/164 (48%), Positives = 113/164 (68%)
Frame = +1
Query: 217 IPTPDEEEKILRVKLEEDPDGEEGSSIPWNHLPDPEVFRQRFRQFGYQDSPGPREAVSQL 396
+P +E++++ VK+EE + + E+FRQ+FR+F YQ++PGPREA+ +L
Sbjct: 12 VPQNPQEQELILVKVEESLSWGQKFKQNGSTRSCQELFRQQFRKFCYQETPGPREALGRL 71
Query: 397 RELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHPENGEEAVTVLEDLESE 576
+ELC WLRPE HTKEQILEL+VLEQF++ILP+ELQ WV++H P++GEEAVT+LEDLE E
Sbjct: 72 QELCYQWLRPEVHTKEQILELLVLEQFLSILPEELQIWVQQHSPKSGEEAVTLLEDLERE 131
Query: 577 LDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSELDAVENQLK 708
DDPGQ V + V +++ +Q L +L ++ QLK
Sbjct: 132 FDDPGQQVPASPQGPAVPWKDMPCLGPSQDLTDIQLQPLKTQLK 175
>ref|XP_003354517.1| PREDICTED: zinc finger protein with KRAB and SCAN domains 1-like
[Sus scrofa].
Length = 562
Score = 148 bits (374), Expect = 4e-36
Identities = 88/186 (47%), Positives = 125/186 (67%), Gaps = 6/186 (3%)
Frame = +1
Query: 178 MSAQSVEEDSILIIPTPDEEEKILRVKLEEDPDGE----EGSSIPWNHLPDPEVFRQRFR 345
M+A+S E L E++ I+ VK+EE+ + E + +S+ + PDPE+FRQRFR
Sbjct: 1 MTAESREATG-LSPQAAQEKDGIVIVKVEEEDEEEHMWGQDTSLQESPPPDPEIFRQRFR 59
Query: 346 QFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHH 525
F YQ++ GPREA+S+L+ELC WLRPE +TKEQILEL+VLEQF++ILPKELQ W++E+
Sbjct: 60 HFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR 119
Query: 526 PENGEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSEL--DAVEN 699
P++GEEAVT+LEDL ELD GQ V + ++L +V + Q S +L +A +
Sbjct: 120 PDSGEEAVTLLEDL--ELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATPS 177
Query: 700 QLKWAS 717
K +S
Sbjct: 178 HFKHSS 183
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,294,661
Number of extensions: 592654
Number of successful extensions: 2177
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 2163
Number of HSP's successfully gapped: 45
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003272
(918 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1005 0.0
Sscrofa_Chr07 74 1e-10
>Sscrofa_Chr06
|| Length = 157765593
Score = 1005 bits (507), Expect = 0.0
Identities = 507/507 (100%)
Strand = Plus / Minus
Query: 93 aggagtgcctgtgaagaaaacagggtatttccctgaggcctgtctcctaccttgattgtc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623852 aggagtgcctgtgaagaaaacagggtatttccctgaggcctgtctcctaccttgattgtc 111623793
Query: 153 ttttcttggagtattataaatcaggatgtctgcacagtcagtggaagaagattcaatact 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623792 ttttcttggagtattataaatcaggatgtctgcacagtcagtggaagaagattcaatact 111623733
Query: 213 tatcatcccaactccagatgaagaggaaaaaattctgagggtgaagttggaggaggatcc 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623732 tatcatcccaactccagatgaagaggaaaaaattctgagggtgaagttggaggaggatcc 111623673
Query: 273 tgatggcgaagaggggtcaagtatcccttggaaccacctccctgacccggaggttttccg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623672 tgatggcgaagaggggtcaagtatcccttggaaccacctccctgacccggaggttttccg 111623613
Query: 333 acagcgcttcaggcagtttggataccaggattcacctgggccccgtgaagctgtgagcca 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623612 acagcgcttcaggcagtttggataccaggattcacctgggccccgtgaagctgtgagcca 111623553
Query: 393 gcttcgagaactttgccgtctatggctcaggccagagacacacacaaaagaacaaatctt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623552 gcttcgagaactttgccgtctatggctcaggccagagacacacacaaaagaacaaatctt 111623493
Query: 453 ggagctggtagtactggagcagtttgttgccatcctgcccaaggagctacagacttgggt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623492 ggagctggtagtactggagcagtttgttgccatcctgcccaaggagctacagacttgggt 111623433
Query: 513 tcgagagcatcatccagagaatggagaggaggcagtgaccgttctagaggatttagagag 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623432 tcgagagcatcatccagagaatggagaggaggcagtgaccgttctagaggatttagagag 111623373
Query: 573 tgagctagatgaccctggacagccggt 599
|||||||||||||||||||||||||||
Sbjct: 111623372 tgagctagatgaccctggacagccggt 111623346
Score = 331 bits (167), Expect = 4e-88
Identities = 174/175 (99%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 745 gatgatgatgctaggactgaaaatggagcacttgctccaaagcaggagattccttcagca 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111620621 gatgatgatgctaggactgaaaatggagcacttgctccaaagcaggagattccttcagca 111620562
Query: 805 gtagaatctcatgaagctcctggcactctcaatataggtgtttcgcagatttttaagtat 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111620561 gtagaatctcatgaagctcctggcactctcaatataggtgtttcgcagatttttaagtat 111620502
Query: 865 ggagaagcctgtttccccaagggcaggtttgaaagaaa-agaaatccctcccgaa 918
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 111620501 ggagaagcctgtttccccaagggcaggtttgaaagaaagagaaatccctcccgaa 111620447
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 597 ggtttctcttcggcgacgaaaacgggacgtgctagtagaggagattgtatctcaagaaga 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623108 ggtttctcttcggcgacgaaaacgggacgtgctagtagaggagattgtatctcaagaaga 111623049
Query: 657 agctcagggattaccaagttctgagcttgatgctgtggaaaaccagctcaagtgggcatc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111623048 agctcagggattaccaagttctgagcttgatgctgtggaaaaccagctcaagtgggcatc 111622989
Query: 717 ctgggagctccactccttaaggcactgtg 745
|||||||||||||||||||||||||||||
Sbjct: 111622988 ctgggagctccactccttaaggcactgtg 111622960
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1 gtctgcgccgggggcttctgggaaacggcttgtgagcggcggcgtttctgcgtcggccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111625808 gtctgcgccgggggcttctgggaaacggcttgtgagcggcggcgtttctgcgtcggccgt 111625749
Query: 61 ggacagcgaagcggttgcagttcccgagcttgagg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 111625748 ggacagcgaagcggttgcagttcccgagcttgagg 111625714
>Sscrofa_Chr07
|| Length = 134764511
Score = 73.8 bits (37), Expect = 1e-10
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 452 tggagctggtagtactggagcagtttgttgccatcctgcccaaggagctacagacttggg 511
|||||||| | || ||||||||||| | ||||||||||| ||||||| ||| | ||||
Sbjct: 24170605 tggagctgctggtgctggagcagttcctgaccatcctgcccgaggagctccaggcctggg 24170546
Query: 512 ttcgagagcatcatccagagaatggagaggaggcagtgaccgttctagaggatttagaga 571
| ||||||| | ||||| || ||||||||||||||| || || || |||||||| ||||
Sbjct: 24170545 tgagagagcaccgtccagggagtggagaggaggcagtaactgtgctggaggatttggaga 24170486
Query: 572 gtgagctagatga 584
| ||||| |||||
Sbjct: 24170485 gagagctggatga 24170473
Score = 63.9 bits (32), Expect = 1e-07
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 397 cgagaactttgccgtctatggctcaggccagagacacacacaaaagaacaaatcttggag 456
||||||||||||| || ||| | ||||||||||||||||| || || || ||| |||||
Sbjct: 24082273 cgagaactttgccatcagtggttgaggccagagacacacaccaaggagcagatcctggag 24082332
Query: 457 ctggtagtactggagcagtttgttgccatcctgcccaaggagct 500
||| | || ||||||||||| | ||||||||||||| |||||
Sbjct: 24082333 ctgctggtgctggagcagttcctgaccatcctgcccaaagagct 24082376
Score = 63.9 bits (32), Expect = 1e-07
Identities = 197/252 (78%)
Strand = Plus / Minus
Query: 321 ggaggttttccgacagcgcttcaggcagtttggataccaggattcacctgggccccgtga 380
|||||| |||||||||| ||||||||| || | |||||||| | |||| ||||||||
Sbjct: 24152502 ggaggtcttccgacagcacttcaggcatttctgctaccaggaaacgtctggaccccgtga 24152443
Query: 381 agctgtgagccagcttcgagaactttgccgtctatggctcaggccagagacacacacaaa 440
||| |||||| || || |||||||||| || ||||| ||||||||||| || || ||
Sbjct: 24152442 ggctttgagccgactccgggaactttgccatcagtggctgaggccagagacccataccaa 24152383
Query: 441 agaacaaatcttggagctggtagtactggagcagtttgttgccatcctgcccaaggagct 500
|||||||| | |||||| | || |||||||| || | |||||||||| |||||||
Sbjct: 24152382 ggaacaaattctagagctgttggtgctggagcaattcctgaccatcctgcctgaggagct 24152323
Query: 501 acagacttgggttcgagagcatcatccagagaatggagaggaggcagtgaccgttctaga 560
|| | ||||| | ||| || |||||||||| ||| || |||| ||||| || || ||
Sbjct: 24152322 ccaagcctgggtccaagaacagcatccagagagtggggaagaggtggtgactgtgctgga 24152263
Query: 561 ggatttagagag 572
|| |||||||||
Sbjct: 24152262 ggctttagagag 24152251
Score = 61.9 bits (31), Expect = 6e-07
Identities = 145/183 (79%)
Strand = Plus / Minus
Query: 367 cctgggccccgtgaagctgtgagccagcttcgagaactttgccgtctatggctcaggcca 426
||||| ||||| ||||| |||||| ||| || ||||| |||| || ||||| ||||||
Sbjct: 24121610 cctggtccccgagaagcactgagccggctccgggaactctgccatcagtggctaaggcca 24121551
Query: 427 gagacacacacaaaagaacaaatcttggagctggtagtactggagcagtttgttgccatc 486
|| ||||| || || || || ||| ||||||| | || ||||||||||| | |||||
Sbjct: 24121550 gacacacataccaaggagcagatcctggagctactggtgctggagcagttcctgaccatc 24121491
Query: 487 ctgcccaaggagctacagacttgggttcgagagcatcatccagagaatggagaggaggca 546
||||| ||||||| ||| | ||||| || |||||||| ||||||| ||| ||||| |||
Sbjct: 24121490 ctgcctgaggagctccaggcctgggtgcgggagcatcacccagagagtggggaggaagca 24121431
Query: 547 gtg 549
|||
Sbjct: 24121430 gtg 24121428
Score = 58.0 bits (29), Expect = 9e-06
Identities = 167/213 (78%)
Strand = Plus / Plus
Query: 340 ttcaggcagtttggataccaggattcacctgggccccgtgaagctgtgagccagcttcga 399
||||||||||| | |||||||| || |||| |||||||| || |||||| ||| |||
Sbjct: 23721670 ttcaggcagttctgctaccaggactccgctggaccccgtgaggcactgagccggctccga 23721729
Query: 400 gaactttgccgtctatggctcaggccagagacacacacaaaagaacaaatcttggagctg 459
|| || ||| ||| ||||| | |||||| || || || || || || ||| ||||||||
Sbjct: 23721730 gagctctgctgtcagtggctgaagccagaaacccatactaaggagcagatcctggagctg 23721789
Query: 460 gtagtactggagcagtttgttgccatcctgcccaaggagctacagacttgggttcgagag 519
| || ||||||||||| | |||||||||| ||| |||||| ||||||| || ||
Sbjct: 23721790 ctggttctggagcagttcctgaccatcctgccaggggatctacaggcttgggtacgtgaa 23721849
Query: 520 catcatccagagaatggagaggaggcagtgacc 552
||| | ||||||| ||||||||| |||||||||
Sbjct: 23721850 cattacccagagagtggagaggaagcagtgacc 23721882
Score = 58.0 bits (29), Expect = 9e-06
Identities = 167/213 (78%)
Strand = Plus / Plus
Query: 340 ttcaggcagtttggataccaggattcacctgggccccgtgaagctgtgagccagcttcga 399
||||||||||| | |||||||| || |||| |||||||| || |||||| ||| |||
Sbjct: 23879254 ttcaggcagttctgctaccaggactccgctggaccccgtgaggcactgagccggctccga 23879313
Query: 400 gaactttgccgtctatggctcaggccagagacacacacaaaagaacaaatcttggagctg 459
|| || ||| ||| ||||| | |||||| || || || || || || ||| ||||||||
Sbjct: 23879314 gagctctgctgtcagtggctgaagccagaaacccatactaaggagcagatcctggagctg 23879373
Query: 460 gtagtactggagcagtttgttgccatcctgcccaaggagctacagacttgggttcgagag 519
| || ||||||||||| | |||||||||| ||| |||||| ||||||| || ||
Sbjct: 23879374 ctggttctggagcagttcctgaccatcctgccaggggatctacaggcttgggtacgtgaa 23879433
Query: 520 catcatccagagaatggagaggaggcagtgacc 552
||| | ||||||| ||||||||| |||||||||
Sbjct: 23879434 cattacccagagagtggagaggaagcagtgacc 23879466
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,552,382
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 10
Length of query: 918
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 897
Effective length of database: 2,808,413,156
Effective search space: 2519146600932
Effective search space used: 2519146600932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)