Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003275
(1063 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776763.1| FUN14 domain-containing protein 2 [Bos taurus]. 303 2e-82
Alignment gi|NP_001098452.1| FUN14 domain-containing protein 1 [Bos tauru... 168 9e-42
Alignment gi|XP_002684722.1| PREDICTED: FUN14 domain-containing protein 2... 151 1e-36
Alignment gi|XP_002702415.1| PREDICTED: FUN14 domain-containing protein 2... 151 1e-36
Alignment gi|XP_002689450.1| PREDICTED: FUN14 domain containing 1-like [B... 147 1e-35
Alignment gi|XP_586027.1| PREDICTED: FUN14 domain containing 1-like [Bos ... 147 1e-35
>ref|NP_776763.1| FUN14 domain-containing protein 2 [Bos taurus].
Length = 190
Score = 303 bits (775), Expect = 2e-82
Identities = 159/182 (87%), Positives = 161/182 (88%), Gaps = 1/182 (0%)
Frame = +2
Query: 5 GSQPAPTAA-RYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWR 181
GS A TAA R+ AS R E RVSSRD+LAEMAAASQGNFEG FESLDLAELAKKQPWWR
Sbjct: 9 GSHLAQTAAARHSASSRGEAARVSSRDELAEMAAASQGNFEGKFESLDLAELAKKQPWWR 68
Query: 182 KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 361
LFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY
Sbjct: 69 TLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 128
Query: 362 IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTXXXXXXXXXXM 541
IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVT M
Sbjct: 129 IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGFLLGM 188
Query: 542 AS 547
AS
Sbjct: 189 AS 190
>ref|NP_001098452.1| FUN14 domain-containing protein 1 [Bos taurus].
Length = 155
Score = 168 bits (425), Expect = 9e-42
Identities = 72/129 (55%), Positives = 104/129 (80%)
Frame = +2
Query: 122 EGNFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKL 301
+ ++E LDL E A++ WW ++FG SGP EKYSVATQ+++GGV+GWC GF+FQKVGKL
Sbjct: 15 DDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVSGWCAGFLFQKVGKL 74
Query: 302 AATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVS 481
AATAVGGGF LLQ+A+H+GY+++DW+RVEKD+ KAK Q+K +++N+ E+ + EE
Sbjct: 75 AATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQVK-KRANKAAPEINNIIEEATE 133
Query: 482 FVKKNVLVT 508
FVK+N++++
Sbjct: 134 FVKQNIVIS 142
>ref|XP_002684722.1| PREDICTED: FUN14 domain-containing protein 2-like [Bos taurus].
Length = 232
Score = 151 bits (381), Expect = 1e-36
Identities = 73/78 (93%), Positives = 74/78 (94%)
Frame = +2
Query: 56 EPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVAT 235
E RVSSRD+LAEMAAASQGNFEG FESLDLAELAKKQPWWR LFGQESGPSAEKYSVAT
Sbjct: 32 EAARVSSRDELAEMAAASQGNFEGKFESLDLAELAKKQPWWRTLFGQESGPSAEKYSVAT 91
Query: 236 QLLIGGVTGWCTGFIFQK 289
QLLIGGVTGWCTGFIFQK
Sbjct: 92 QLLIGGVTGWCTGFIFQK 109
>ref|XP_002702415.1| PREDICTED: FUN14 domain-containing protein 2-like [Bos taurus].
Length = 142
Score = 151 bits (381), Expect = 1e-36
Identities = 73/78 (93%), Positives = 74/78 (94%)
Frame = +2
Query: 56 EPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVAT 235
E RVSSRD+LAEMAAASQGNFEG FESLDLAELAKKQPWWR LFGQESGPSAEKYSVAT
Sbjct: 32 EAARVSSRDELAEMAAASQGNFEGKFESLDLAELAKKQPWWRTLFGQESGPSAEKYSVAT 91
Query: 236 QLLIGGVTGWCTGFIFQK 289
QLLIGGVTGWCTGFIFQK
Sbjct: 92 QLLIGGVTGWCTGFIFQK 109
>ref|XP_002689450.1| PREDICTED: FUN14 domain containing 1-like [Bos taurus].
Length = 155
Score = 147 bits (372), Expect = 1e-35
Identities = 65/126 (51%), Positives = 95/126 (75%)
Frame = +2
Query: 128 NFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAA 307
+++ LDL E A++Q WW ++F SGP EKYSVATQ+ +GGV+GWC GF+FQKV KLAA
Sbjct: 17 SYKVLDLTEYARRQHWWNRVFAHSSGPIVEKYSVATQIAVGGVSGWCAGFLFQKVRKLAA 76
Query: 308 TAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFV 487
TAVGGGF LLQ+A GY++++W+R EKD+ KAK ++K +++N+ EV + E FV
Sbjct: 77 TAVGGGFLLLQMAGDGGYVQINWKRREKDVNKAKGRMK-KRANKAAPEVSNVIEAATEFV 135
Query: 488 KKNVLV 505
++N+++
Sbjct: 136 RQNIVI 141
>ref|XP_586027.1| PREDICTED: FUN14 domain containing 1-like [Bos taurus].
Length = 155
Score = 147 bits (372), Expect = 1e-35
Identities = 65/126 (51%), Positives = 95/126 (75%)
Frame = +2
Query: 128 NFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAA 307
+++ LDL E A++Q WW ++F SGP EKYSVATQ+ +GGV+GWC GF+FQKV KLAA
Sbjct: 17 SYKVLDLTEYARRQHWWNRVFAHSSGPIVEKYSVATQIAVGGVSGWCAGFLFQKVRKLAA 76
Query: 308 TAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFV 487
TAVGGGF LLQ+A GY++++W+R EKD+ KAK ++K +++N+ EV + E FV
Sbjct: 77 TAVGGGFLLLQMAGDGGYVQINWKRREKDVNKAKGRMK-KRANKAAPEVSNVIEAATEFV 135
Query: 488 KKNVLV 505
++N+++
Sbjct: 136 RQNIVI 141
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,435,949
Number of extensions: 1171627
Number of successful extensions: 5205
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5199
Number of HSP's successfully gapped: 6
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003275
(1063 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028684.1| FUN14 domain-containing protein 2 [Canis lup... 298 5e-81
Alignment gi|XP_548961.2| PREDICTED: similar to FUN14 domain containing 1... 169 4e-42
Alignment gi|XP_853042.1| PREDICTED: similar to FUN14 domain containing 1... 112 8e-25
>ref|NP_001028684.1| FUN14 domain-containing protein 2 [Canis lupus familiaris].
Length = 189
Score = 298 bits (764), Expect = 5e-81
Identities = 156/182 (85%), Positives = 159/182 (87%)
Frame = +2
Query: 2 AGSQPAPTAARYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWR 181
AGSQ A AR AS RAE RVSSRD LA+MAA+SQGNFEG ESLDLAE AKKQPWWR
Sbjct: 8 AGSQLAAMTARRSASYRAEAPRVSSRDGLADMAASSQGNFEGKLESLDLAEFAKKQPWWR 67
Query: 182 KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 361
KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY
Sbjct: 68 KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 127
Query: 362 IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTXXXXXXXXXXM 541
IKVDWQRVEKDMKKAKEQLKIRKS+QIPTEVKSKAEEVVSFVKKNVLVT M
Sbjct: 128 IKVDWQRVEKDMKKAKEQLKIRKSSQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGFLLGM 187
Query: 542 AS 547
AS
Sbjct: 188 AS 189
>ref|XP_548961.2| PREDICTED: similar to FUN14 domain containing 1 [Canis familiaris].
Length = 155
Score = 169 bits (428), Expect = 4e-42
Identities = 72/127 (56%), Positives = 103/127 (81%)
Frame = +2
Query: 128 NFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAA 307
++E LDL E A++ WW ++FG SGP EKYSVATQ+++GGVTGWC GF+FQKVGKLAA
Sbjct: 17 SYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAA 76
Query: 308 TAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFV 487
TAVGGGF LLQ+A+H+GY+++DW+RVEKD+ KAK Q+K +++N+ E+ + EE F+
Sbjct: 77 TAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIK-KRANKAAPEINNIIEEATEFI 135
Query: 488 KKNVLVT 508
K+N++++
Sbjct: 136 KQNIVIS 142
>ref|XP_853042.1| PREDICTED: similar to FUN14 domain containing 1 [Canis familiaris].
Length = 110
Score = 112 bits (279), Expect = 8e-25
Identities = 53/109 (48%), Positives = 71/109 (65%)
Frame = +2
Query: 95 MAAASQGNFEGNFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTG 274
M A S N+ DL E ++ W ++ G S EK+SV T + GGVTG
Sbjct: 1 MEANSSYTVTRNYAVSDLTEYTRRHYWCNRVLGYSSESMVEKFSVVTLIATGGVTGCHVR 60
Query: 275 FIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLK 421
F+FQKVGKLA+T VGGGF LLQ+A+H+GY+++DW+R EKD+ KAK Q+K
Sbjct: 61 FLFQKVGKLASTTVGGGFLLLQIASHSGYLRIDWKRAEKDVNKAKRQIK 109
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,224,391
Number of extensions: 1210669
Number of successful extensions: 5345
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5340
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003275
(1063 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076423.2| FUN14 domain-containing protein 2 [Homo sapiens]. 309 2e-84
Alignment gi|NP_776155.1| FUN14 domain-containing protein 1 [Homo sapiens]. 170 2e-42
>ref|NP_076423.2| FUN14 domain-containing protein 2 [Homo sapiens].
Length = 189
Score = 309 bits (792), Expect = 2e-84
Identities = 157/182 (86%), Positives = 163/182 (89%)
Frame = +2
Query: 2 AGSQPAPTAARYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWR 181
AGSQ T AR+ A+ RA+PLRVSSRD+L EMAA+SQGNFEGNFESLDLAE AKKQPWWR
Sbjct: 8 AGSQVVATTARHSAAYRADPLRVSSRDKLTEMAASSQGNFEGNFESLDLAEFAKKQPWWR 67
Query: 182 KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 361
KLFGQESGPSAEKYSVATQL IGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY
Sbjct: 68 KLFGQESGPSAEKYSVATQLFIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 127
Query: 362 IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTXXXXXXXXXXM 541
IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEV+SKAEEVVSFVKKNVLVT M
Sbjct: 128 IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVRSKAEEVVSFVKKNVLVTGGFFGGFLLGM 187
Query: 542 AS 547
AS
Sbjct: 188 AS 189
>ref|NP_776155.1| FUN14 domain-containing protein 1 [Homo sapiens].
Length = 155
Score = 170 bits (431), Expect = 2e-42
Identities = 72/129 (55%), Positives = 104/129 (80%)
Frame = +2
Query: 122 EGNFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKL 301
+ ++E LDL E A++ WW ++FG SGP EKYSVATQ+++GGVTGWC GF+FQKVGKL
Sbjct: 15 DDSYEVLDLTEYARRHQWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKL 74
Query: 302 AATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVS 481
AATAVGGGF LLQ+A+H+GY+++DW+RVEKD+ KAK Q+K +++N+ E+ + EE
Sbjct: 75 AATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIK-KRANKAAPEINNLIEEATE 133
Query: 482 FVKKNVLVT 508
F+K+N++++
Sbjct: 134 FIKQNIVIS 142
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,234,465
Number of extensions: 1171769
Number of successful extensions: 4903
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4893
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003275
(1063 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080402.3| FUN14 domain-containing protein 2 [Mus musculus]. 265 3e-71
Alignment gi|NP_001123358.1| hypothetical protein LOC100039043 [Mus muscu... 247 1e-65
Alignment gi|NP_082770.1| hypothetical protein LOC73297 [Mus musculus]. 247 1e-65
Alignment gi|NP_082334.1| FUN14 domain-containing protein 1 [Mus musculus]. 169 4e-42
>ref|NP_080402.3| FUN14 domain-containing protein 2 [Mus musculus].
Length = 151
Score = 265 bits (678), Expect = 3e-71
Identities = 132/151 (87%), Positives = 137/151 (90%)
Frame = +2
Query: 95 MAAASQGNFEGNFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTG 274
MAA SQGNF+G FE+LDLAEL KKQPWWRKLFGQESGPSAEKYSVATQL+IGGVTGWCTG
Sbjct: 1 MAANSQGNFDGKFEALDLAELTKKQPWWRKLFGQESGPSAEKYSVATQLVIGGVTGWCTG 60
Query: 275 FIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEV 454
F+FQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRK+ QIPTEV
Sbjct: 61 FVFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKNKQIPTEV 120
Query: 455 KSKAEEVVSFVKKNVLVTXXXXXXXXXXMAS 547
KSKAEEVVSFVKKNVLVT MAS
Sbjct: 121 KSKAEEVVSFVKKNVLVTGGFFGGFLLGMAS 151
>ref|NP_001123358.1| hypothetical protein LOC100039043 [Mus musculus].
Length = 184
Score = 247 bits (630), Expect = 1e-65
Identities = 130/175 (74%), Positives = 140/175 (80%)
Frame = +2
Query: 23 TAARYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWRKLFGQES 202
T AR +S +P S + + MA+ASQG+F+ +E+LDL E AKKQPWWRKLFGQES
Sbjct: 12 TVARSISSF-TDPHHFPSHNHIIRMASASQGHFDA-YEALDLTEFAKKQPWWRKLFGQES 69
Query: 203 GPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQR 382
+ EKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDW R
Sbjct: 70 RSAGEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWSR 129
Query: 383 VEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTXXXXXXXXXXMAS 547
VEKDMKKAKEQL IRKS QIPTEVKSKAEEVV FVKKNVLVT MAS
Sbjct: 130 VEKDMKKAKEQLTIRKSAQIPTEVKSKAEEVVCFVKKNVLVTGGFFGGFLLGMAS 184
>ref|NP_082770.1| hypothetical protein LOC73297 [Mus musculus].
Length = 184
Score = 247 bits (630), Expect = 1e-65
Identities = 130/175 (74%), Positives = 140/175 (80%)
Frame = +2
Query: 23 TAARYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWRKLFGQES 202
T AR +S +P S + + MA+ASQG+F+ +E+LDL E AKKQPWWRKLFGQES
Sbjct: 12 TVARSISSF-TDPHHFPSHNHIIRMASASQGHFDA-YEALDLTEFAKKQPWWRKLFGQES 69
Query: 203 GPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWQR 382
+ EKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDW R
Sbjct: 70 RSAGEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGYIKVDWSR 129
Query: 383 VEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTXXXXXXXXXXMAS 547
VEKDMKKAKEQL IRKS QIPTEVKSKAEEVV FVKKNVLVT MAS
Sbjct: 130 VEKDMKKAKEQLTIRKSAQIPTEVKSKAEEVVCFVKKNVLVTGGFFGGFLLGMAS 184
>ref|NP_082334.1| FUN14 domain-containing protein 1 [Mus musculus].
Length = 155
Score = 169 bits (427), Expect = 4e-42
Identities = 72/127 (56%), Positives = 103/127 (81%)
Frame = +2
Query: 128 NFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAA 307
++E LDL E A++ WW ++FG SGP EKYSVATQ+++GGVTGWC GF+FQKVGKLAA
Sbjct: 17 SYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAA 76
Query: 308 TAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFV 487
TAVGGGF LLQ+A+H+GY+++DW+RVEKD+ KAK Q+K +++N+ E+ + EE F+
Sbjct: 77 TAVGGGFLLLQVASHSGYVQIDWKRVEKDVNKAKRQIK-KRANKAAPEINNIIEEATDFI 135
Query: 488 KKNVLVT 508
K+N++++
Sbjct: 136 KQNIVIS 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,437,055
Number of extensions: 974161
Number of successful extensions: 3957
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3937
Number of HSP's successfully gapped: 4
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003275
(1063 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998908.1| FUN14 domain-containing protein 2 [Sus scrofa]. 339 2e-93
Alignment gi|XP_003135086.1| PREDICTED: FUN14 domain-containing protein 1... 168 4e-42
>ref|NP_998908.1| FUN14 domain-containing protein 2 [Sus scrofa].
Length = 189
Score = 339 bits (869), Expect = 2e-93
Identities = 172/182 (94%), Positives = 172/182 (94%)
Frame = +2
Query: 2 AGSQPAPTAARYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWR 181
AGSQPAPTAARYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWR
Sbjct: 8 AGSQPAPTAARYFASCRAEPLRVSSRDQLAEMAAASQGNFEGNFESLDLAELAKKQPWWR 67
Query: 182 KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 361
KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY
Sbjct: 68 KLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLLQLANHTGY 127
Query: 362 IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTXXXXXXXXXXM 541
IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVT M
Sbjct: 128 IKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVSFVKKNVLVTGGFFGGFLLGM 187
Query: 542 AS 547
AS
Sbjct: 188 AS 189
>ref|XP_003135086.1| PREDICTED: FUN14 domain-containing protein 1-like [Sus scrofa].
Length = 155
Score = 168 bits (426), Expect = 4e-42
Identities = 72/129 (55%), Positives = 104/129 (80%)
Frame = +2
Query: 122 EGNFESLDLAELAKKQPWWRKLFGQESGPSAEKYSVATQLLIGGVTGWCTGFIFQKVGKL 301
+ ++E LDL E A++ WW ++FG SGP EKYSVATQ+++GGV+GWC GF+FQKVGKL
Sbjct: 15 DDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVSGWCAGFLFQKVGKL 74
Query: 302 AATAVGGGFFLLQLANHTGYIKVDWQRVEKDMKKAKEQLKIRKSNQIPTEVKSKAEEVVS 481
AATAVGGGF LLQ+A+H+GY+++DW+RVEKD+ KAK Q+K +++N+ E+ + EE
Sbjct: 75 AATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIK-KRANKAAPEINNIIEEATE 133
Query: 482 FVKKNVLVT 508
FVK+N++++
Sbjct: 134 FVKQNIVIS 142
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,413,483
Number of extensions: 757574
Number of successful extensions: 3369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3358
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003275
(1063 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1076 0.0
Sscrofa_Chr11 135 5e-29
>Sscrofa_ChrX
|| Length = 144288218
Score = 1076 bits (543), Expect = 0.0
Identities = 577/593 (97%)
Strand = Plus / Minus
Query: 471 aggtggtgtcctttgtgaagaagaacgtcctggtgacnnnnnnntttttcggaggctttc 530
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 143117091 aggtggtgtcctttgtgaagaagaacgtcctggtgacgggggggtttttcggaggctttc 143117032
Query: 531 tgcttggcatggcgtcctagagcgacgacttcgtggccgtccttcccggcttttccgacg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143117031 tgcttggcatggcgtcctagagcgacgacttcgtggccgtccttcccggcttttccgacg 143116972
Query: 591 gcagccgctccgctccaggacaggacgccgagcctgtccctctcctccccgccgggcgtg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143116971 gcagccgctccgctccaggacaggacgccgagcctgtccctctcctccccgccgggcgtg 143116912
Query: 651 tccgagtggcttctgcaggcgtctgtggctccgaggtgaccggcccgccgggagctcgca 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143116911 tccgagtggcttctgcaggcgtctgtggctccgaggtgaccggcccgccgggagctcgca 143116852
Query: 711 ggcggtgaagacacggaggcggtagcgcccctccccctgagtaccgcgcggcaagagtcc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143116851 ggcggtgaagacacggaggcggtagcgcccctccccctgagtaccgcgcggcaagagtcc 143116792
Query: 771 tccctgctccgcaaggcacccccgggcgagagggcgcccggcttgcttgggaaaaggaag 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143116791 tccctgctccgcaaggcacccccgggcgagagggcgcccggcttgcttgggaaaaggaag 143116732
Query: 831 aagcagcgtgtgcgctatagccgatgctgtgctgcagggaagggaactgaatacacttgc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143116731 aagcagcgtgtgcgctatagccgatgctgtgctgcagggaagggaactgaatacacttgc 143116672
Query: 891 cttgaagcatgnnnnnnnttggtttcctggtgtctgctttctttcctagtgcgtttttac 950
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143116671 cttgaagcatgaaagagtttggtttcctggtgtctgctttctttcctagtgcgtttttac 143116612
Query: 951 ctttcagaaaaaagggcgacctggcgacctggcgtggctgtaaatgatcctgacacaaag 1010
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 143116611 ctttcagaaaagagggcgacctggcgacctggcgtggctgtaaatgatcctgacacaagg 143116552
Query: 1011 acagcctacgccctgtaactggaaaaaatccgaatgtggagtccgcttgtgct 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143116551 acagcctacgccctgtaactggaaaaaatccgaatgtggagtccgcttgtgct 143116499
Score = 307 bits (155), Expect = 7e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 112 aggaaactttgaggggaattttgagtcacttgaccttgcagaactggctaaaaagcagcc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143124881 aggaaactttgaggggaattttgagtcacttgaccttgcagaactggctaaaaagcagcc 143124822
Query: 172 atggtggcgcaagctgtttgggcaggaatctgggccttcagccgaaaagtatagcgtggc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143124821 atggtggcgcaagctgtttgggcaggaatctgggccttcagccgaaaagtatagcgtggc 143124762
Query: 232 aacccagctgttaattggaggtgtcactggctggt 266
|||||||||||||||||||||||||||||||||||
Sbjct: 143124761 aacccagctgttaattggaggtgtcactggctggt 143124727
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 339 agcttgcaaaccatactgggtacatcaaagttgactggcagcgagtggagaaggacatga 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143119399 agcttgcaaaccatactgggtacatcaaagttgactggcagcgagtggagaaggacatga 143119340
Query: 399 agaaggccaaggagcagctgaagatccgtaagagcaaccagataccgacggaggtcaaga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143119339 agaaggccaaggagcagctgaagatccgtaagagcaaccagataccgacggaggtcaaga 143119280
Query: 459 gcaaagcagaagaggtg 475
|||||||||||||||||
Sbjct: 143119279 gcaaagcagaagaggtg 143119263
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 1 tgccggaagccagccggcgccgacggcggcgcggtactttgcgtcctgccgcgcggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143128995 tgccggaagccagccggcgccgacggcggcgcggtactttgcgtcctgccgcgcggagcc 143128936
Query: 61 cctgcgggtgtcatcgcgagaccagctcgccgaaatggccgcagccagtcaagg 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143128935 cctgcgggtgtcatcgcgagaccagctcgccgaaatggccgcagccagtcaagg 143128882
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 264 ggtgcacgggtttcatattccagaaggttggaaagttggctgcaacggctgtgggaggtg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143123693 ggtgcacgggtttcatattccagaaggttggaaagttggctgcaacggctgtgggaggtg 143123634
Query: 324 gattttttctcctgcag 340
|||||||||||||||||
Sbjct: 143123633 gattttttctcctgcag 143123617
>Sscrofa_Chr11
|| Length = 87690581
Score = 135 bits (68), Expect = 5e-29
Identities = 237/291 (81%), Gaps = 6/291 (2%)
Strand = Plus / Minus
Query: 253 tgtcactggctggtgcacgggtttcatatt-ccagaaggttggaaagttggctgcaacgg 311
||||||||| ||||||| |||||||| || |||| |||| ||| ||||| ||||||| |
Sbjct: 3479506 tgtcactggagggtgcacaggtttcatctttccagcaggtcggagagttgactgcaacag 3479447
Query: 312 ctgtgggaggtggattttttc-tcctgcagcttgcaaaccatactgggtacatcaaagtt 370
||| | |||||||| |||||| |||| | ||| |||||| || |||||||| ||| |||
Sbjct: 3479446 ctgggagaggtggactttttcctccttccgctggcaaac-attctgggtacctcagcgtt 3479388
Query: 371 gactggcagcgagtggagaaggacatgaagaaggccaaggagcagctgaagatccgtaag 430
||| |||||| || ||||||| |||| | |||| ||||||||||||||| || ||
Sbjct: 3479387 gacaggcagcaggta---aaggacaggaagcaagccagggagcagctgaagatgggtgag 3479331
Query: 431 agcaaccagataccgacggaggtcaagagcaaagcagaagaggtggtgtcctttgtgaag 490
|| ||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct: 3479330 aggaaccagatacccacggaggacaagagcaaagcagaagaggtggtgtcattggtgaag 3479271
Query: 491 aagaacgtcctggtgacnnnnnnntttttcggaggctttctgcttggcatg 541
||||| || || ||||| |||||| ||||||||| |||||||||
Sbjct: 3479270 aagaatgttctagtgactggcgggtttttcagaggctttccccttggcatg 3479220
Score = 117 bits (59), Expect = 1e-23
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 123 aggggaattttgagtcacttgaccttgcagaactggctaaaaagcagccatggtggcgca 182
||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||
Sbjct: 3479629 aggggaattttgagtcactggaccttgcagaattttctaaaaagcagccatggtggtgca 3479570
Query: 183 agctgtttgggcaggaatctgggcctt 209
|||||| |||||||||||||||||||
Sbjct: 3479569 agctgtcggggcaggaatctgggcctt 3479543
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,436,250
Number of extensions: 138
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 7
Length of query: 1063
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1042
Effective length of database: 2,808,413,156
Effective search space: 2926366508552
Effective search space used: 2926366508552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)