Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003277
(1089 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068643.1| signal peptidase complex catalytic subunit S... 377 e-104
Alignment gi|NP_776890.1| signal peptidase complex catalytic subunit SEC1... 301 5e-82
>ref|NP_001068643.1| signal peptidase complex catalytic subunit SEC11C [Bos taurus].
Length = 192
Score = 377 bits (968), Expect = e-104
Identities = 188/192 (97%), Positives = 189/192 (98%)
Frame = +1
Query: 352 MVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 531
MVRA VG+HLP SGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
Sbjct: 1 MVRASTVGAHLPASGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 60
Query: 532 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 711
IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
Sbjct: 61 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 120
Query: 712 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 891
IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
Sbjct: 121 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 180
Query: 892 VMGAYVLLKRES 927
VMGAYVLLKRES
Sbjct: 181 VMGAYVLLKRES 192
>ref|NP_776890.1| signal peptidase complex catalytic subunit SEC11A [Bos taurus].
Length = 179
Score = 301 bits (772), Expect = 5e-82
Identities = 143/176 (81%), Positives = 163/176 (92%)
Frame = +1
Query: 397 LDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHR 576
LD D+R+MNKRQLYYQVLNF MIVSSALMIWKGL+V+TGSESPIVVVLSGSMEPAFHR
Sbjct: 4 LDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHR 63
Query: 577 GDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDR 756
GDLLFLTN EDPIR GEIVVF++EGR+IPIVHRV+K+HEK NG IKFLTKGDNN VDDR
Sbjct: 64 GDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAVDDR 123
Query: 757 GLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 924
GLYK+GQ+WLEKKDVVGRARGF+PY+G+VTI+MNDYPKFKYA+L ++G +VL+ RE
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,823,347
Number of extensions: 1380493
Number of successful extensions: 11797
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11137
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003277
(1089 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003312.1| signal peptidase complex catalytic subunit S... 381 e-106
Alignment gi|NP_001003313.1| signal peptidase complex catalytic subunit S... 301 6e-82
>ref|NP_001003312.1| signal peptidase complex catalytic subunit SEC11C [Canis lupus
familiaris].
Length = 192
Score = 381 bits (978), Expect = e-106
Identities = 190/192 (98%), Positives = 191/192 (99%)
Frame = +1
Query: 352 MVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 531
MVRAGAVG+HLP SGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
Sbjct: 1 MVRAGAVGTHLPASGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 60
Query: 532 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 711
IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
Sbjct: 61 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 120
Query: 712 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 891
IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
Sbjct: 121 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 180
Query: 892 VMGAYVLLKRES 927
VMGAYVLLKRES
Sbjct: 181 VMGAYVLLKRES 192
>ref|NP_001003313.1| signal peptidase complex catalytic subunit SEC11A [Canis lupus
familiaris].
Length = 179
Score = 301 bits (772), Expect = 6e-82
Identities = 143/176 (81%), Positives = 163/176 (92%)
Frame = +1
Query: 397 LDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHR 576
LD D+R+MNKRQLYYQVLNF MIVSSALMIWKGL+V+TGSESPIVVVLSGSMEPAFHR
Sbjct: 4 LDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHR 63
Query: 577 GDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDR 756
GDLLFLTN EDPIR GEIVVF++EGR+IPIVHRV+K+HEK NG IKFLTKGDNN VDDR
Sbjct: 64 GDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAVDDR 123
Query: 757 GLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 924
GLYK+GQ+WLEKKDVVGRARGF+PY+G+VTI+MNDYPKFKYA+L ++G +VL+ RE
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,753,662
Number of extensions: 1413775
Number of successful extensions: 11952
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11213
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003277
(1089 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_150596.1| signal peptidase complex catalytic subunit SEC1... 380 e-105
Alignment gi|NP_055115.1| signal peptidase complex catalytic subunit SEC1... 301 5e-82
>ref|NP_150596.1| signal peptidase complex catalytic subunit SEC11C [Homo sapiens].
Length = 192
Score = 380 bits (975), Expect = e-105
Identities = 189/192 (98%), Positives = 191/192 (99%)
Frame = +1
Query: 352 MVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 531
MVRAGAVG+HLP SGLDIFGDL+KMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
Sbjct: 1 MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 60
Query: 532 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 711
IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
Sbjct: 61 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 120
Query: 712 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 891
IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
Sbjct: 121 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 180
Query: 892 VMGAYVLLKRES 927
VMGAYVLLKRES
Sbjct: 181 VMGAYVLLKRES 192
>ref|NP_055115.1| signal peptidase complex catalytic subunit SEC11A [Homo sapiens].
Length = 179
Score = 301 bits (772), Expect = 5e-82
Identities = 143/176 (81%), Positives = 163/176 (92%)
Frame = +1
Query: 397 LDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHR 576
LD D+R+MNKRQLYYQVLNF MIVSSALMIWKGL+V+TGSESPIVVVLSGSMEPAFHR
Sbjct: 4 LDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHR 63
Query: 577 GDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDR 756
GDLLFLTN EDPIR GEIVVF++EGR+IPIVHRV+K+HEK NG IKFLTKGDNN VDDR
Sbjct: 64 GDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAVDDR 123
Query: 757 GLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 924
GLYK+GQ+WLEKKDVVGRARGF+PY+G+VTI+MNDYPKFKYA+L ++G +VL+ RE
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,677,535
Number of extensions: 1367458
Number of successful extensions: 11044
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10441
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003277
(1089 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079744.1| signal peptidase complex catalytic subunit SEC1... 380 e-106
Alignment gi|NP_064335.1| signal peptidase complex catalytic subunit SEC1... 300 2e-81
>ref|NP_079744.1| signal peptidase complex catalytic subunit SEC11C [Mus musculus].
Length = 192
Score = 380 bits (977), Expect = e-106
Identities = 190/192 (98%), Positives = 191/192 (99%)
Frame = +1
Query: 352 MVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 531
MVRAGAVG+HLPTS LDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
Sbjct: 1 MVRAGAVGTHLPTSSLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 60
Query: 532 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 711
IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
Sbjct: 61 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 120
Query: 712 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 891
IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
Sbjct: 121 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 180
Query: 892 VMGAYVLLKRES 927
VMGAYVLLKRES
Sbjct: 181 VMGAYVLLKRES 192
>ref|NP_064335.1| signal peptidase complex catalytic subunit SEC11A [Mus musculus].
Length = 179
Score = 300 bits (767), Expect = 2e-81
Identities = 142/176 (80%), Positives = 163/176 (92%)
Frame = +1
Query: 397 LDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHR 576
LD D+R+MNKRQLYYQVLNF MIVSSALMIWKGL+V+TGSESPIVVVLSGSMEPAFHR
Sbjct: 4 LDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHR 63
Query: 577 GDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDR 756
GDLLFLTN EDPIR GEIVVF++EGR+IPIVHRV+K+HEK +G IKFLTKGDNN VDDR
Sbjct: 64 GDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQDGHIKFLTKGDNNAVDDR 123
Query: 757 GLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 924
GLYK+GQ+WLEKKDVVGRARGF+PY+G+VTI+MNDYPKFKYA+L ++G +VL+ RE
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,724,765
Number of extensions: 1132410
Number of successful extensions: 8416
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7931
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003277
(1089 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121761.1| PREDICTED: signal peptidase complex catalyti... 384 e-107
Alignment gi|XP_003361919.1| PREDICTED: signal peptidase complex catalyti... 301 3e-82
>ref|XP_003121761.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like
[Sus scrofa].
Length = 192
Score = 384 bits (986), Expect = e-107
Identities = 192/192 (100%), Positives = 192/192 (100%)
Frame = +1
Query: 352 MVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 531
MVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP
Sbjct: 1 MVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESP 60
Query: 532 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 711
IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD
Sbjct: 61 IVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGD 120
Query: 712 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 891
IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA
Sbjct: 121 IKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLA 180
Query: 892 VMGAYVLLKRES 927
VMGAYVLLKRES
Sbjct: 181 VMGAYVLLKRES 192
>ref|XP_003361919.1| PREDICTED: signal peptidase complex catalytic subunit SEC11A-like
[Sus scrofa].
Length = 179
Score = 301 bits (772), Expect = 3e-82
Identities = 143/176 (81%), Positives = 163/176 (92%)
Frame = +1
Query: 397 LDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHR 576
LD D+R+MNKRQLYYQVLNF MIVSSALMIWKGL+V+TGSESPIVVVLSGSMEPAFHR
Sbjct: 4 LDFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHR 63
Query: 577 GDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDR 756
GDLLFLTN EDPIR GEIVVF++EGR+IPIVHRV+K+HEK NG IKFLTKGDNN VDDR
Sbjct: 64 GDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAVDDR 123
Query: 757 GLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 924
GLYK+GQ+WLEKKDVVGRARGF+PY+G+VTI+MNDYPKFKYA+L ++G +VL+ RE
Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,422,401
Number of extensions: 913182
Number of successful extensions: 7558
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7011
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003277
(1089 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 866 0.0
Sscrofa_Chr04 351 5e-94
Sscrofa_Chr02 66 4e-08
>Sscrofa_Chr01
|| Length = 315321322
Score = 866 bits (437), Expect = 0.0
Identities = 437/437 (100%)
Strand = Plus / Plus
Query: 2 gtcacttctccgagctgcccgtaggatatgcaggatcacccgctttcccaagttccctcg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179382972 gtcacttctccgagctgcccgtaggatatgcaggatcacccgctttcccaagttccctcg 179383031
Query: 62 caatggtcggacaaggctccggagccgggtcgtttccctccctgggagccctgggtcttc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179383032 caatggtcggacaaggctccggagccgggtcgtttccctccctgggagccctgggtcttc 179383091
Query: 122 actggacgaggctcttgtcccgtggcattctgggagtggtagtttcttcttaccagttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179383092 actggacgaggctcttgtcccgtggcattctgggagtggtagtttcttcttaccagttct 179383151
Query: 182 ttgcaggtactcaagtggctcagactcacaggactacgatttcccagacgcccaagcgag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179383152 ttgcaggtactcaagtggctcagactcacaggactacgatttcccagacgcccaagcgag 179383211
Query: 242 cctctggtcacgtggccaacaaggccggtgggcgggggcccggccggtgctccgcagctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179383212 cctctggtcacgtggccaacaaggccggtgggcgggggcccggccggtgctccgcagctg 179383271
Query: 302 tctgtgacacccggagcccgcgggtcgcctcggcccccagagaccccggcatggtgcgcg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179383272 tctgtgacacccggagcccgcgggtcgcctcggcccccagagaccccggcatggtgcgcg 179383331
Query: 362 cgggcgctgtggggtcgcatctccccacgtccggtttggacatctttggggacctgagga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179383332 cgggcgctgtggggtcgcatctccccacgtccggtttggacatctttggggacctgagga 179383391
Query: 422 agatgaacaagcgccag 438
|||||||||||||||||
Sbjct: 179383392 agatgaacaagcgccag 179383408
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 875 agtatgctcttctggctgtaatgggtgcctatgtgttactaaaacgtgaatcctaagatg 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179397462 agtatgctcttctggctgtaatgggtgcctatgtgttactaaaacgtgaatcctaagatg 179397521
Query: 935 aaaagcagttcctgggaccagaccgaactgctaaaaaagagaaaaactaatatatttgaa 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179397522 aaaagcagttcctgggaccagaccgaactgctaaaaaagagaaaaactaatatatttgaa 179397581
Query: 995 atgttccactttctgtataaaagggaacaatgtggagacatttttgtcttgttcaaataa 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179397582 atgttccactttctgtataaaagggaacaatgtggagacatttttgtcttgttcaaataa 179397641
Query: 1055 atgattcatca 1065
|||||||||||
Sbjct: 179397642 atgattcatca 179397652
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 547 agtggcagcatggagccagcctttcacaggggcgaccttctgttcctaacaaatttccgg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179392202 agtggcagcatggagccagcctttcacaggggcgaccttctgttcctaacaaatttccgg 179392261
Query: 607 gaagacccgattagagctggtgaaattgttgtttttaaagttgaaggacgagacattcca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179392262 gaagacccgattagagctggtgaaattgttgtttttaaagttgaaggacgagacattcca 179392321
Query: 667 atagttcacagagtaatcaaagttcatgaaaa 698
||||||||||||||||||||||||||||||||
Sbjct: 179392322 atagttcacagagtaatcaaagttcatgaaaa 179392353
Score = 234 bits (118), Expect = 8e-59
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 699 agataatggagacatcaaatttctgactaaaggagataataacgaagttgacgatagagg 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179394452 agataatggagacatcaaatttctgactaaaggagataataacgaagttgacgatagagg 179394511
Query: 759 cctgtacaaagaagggcaaaactggctcgaaaagaaggacgtggtgggaagagccagagg 818
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179394512 cttgtacaaagaagggcaaaactggctcgaaaagaaggacgtggtgggaagagccagagg 179394571
Query: 819 gt 820
||
Sbjct: 179394572 gt 179394573
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 435 ccagctctattaccaggtcttaaacttcgccatgatcgtgtcttctgcgctcatgatctg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179389150 ccagctctattaccaggtcttaaacttcgccatgatcgtgtcttctgcgctcatgatctg 179389209
Query: 495 gaaaggcttgattgtcctcactggcagcgagagccccatcgtcgtggtgctaag 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179389210 gaaaggcttgattgtcctcactggcagcgagagccccatcgtcgtggtgctaag 179389263
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 818 ggtttttaccgtatgttggcatggtcaccataataatgaatgattacccaaaattcaag 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179396789 ggtttttaccgtatgttggcatggtcaccataataatgaatgattacccaaaattcaag 179396847
>Sscrofa_Chr04
|| Length = 143465943
Score = 351 bits (177), Expect = 5e-94
Identities = 407/483 (84%), Gaps = 18/483 (3%)
Strand = Plus / Minus
Query: 588 gttcctaacaaatttccgggaagacccgattagagctggtgaaattgttgtttttaaagt 647
|||||||||| |||||| |||||| || || | ||||||||| | || ||||||||||
Sbjct: 40962294 gttcctaacacatttccaggaagatcctatgaaagctggtgaca--gtcgtttttaaagc 40962237
Query: 648 tgaaggacgagacattccaatagttcacagagtaatcaaagttcatgaaaaagataatgg 707
|||||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||
Sbjct: 40962236 tgaaggactagacattccaatagttcatggagtgatcaaagttcatgaaaaaaataatgg 40962177
Query: 708 agacatcaaatttctgactaaaggagataataacgaagttgacgatagaggcctgtacaa 767
||||||||||||||| ||| ||||||||||||| |||||||| |||||| | |||||||
Sbjct: 40962176 agacatcaaatttctaactgaaggagataataatgaagttgatgatagaagtttgtacaa 40962117
Query: 768 agaagggcaaaactggctcgaaaagaaggacgtggtgggaagagccagagggtttttacc 827
|||||| || ||||||||| || |||||| |||||| |||| | | | ||||| | |
Sbjct: 40962116 agaaggccagaactggctc---aaaaaggacatggtggaaagatcgaaaatgttttcatc 40962060
Query: 828 gtatgttggcatggtcaccataataatgaatgattacccaaaattcaagtatgctcttct 887
|||||||| || |||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct: 40962059 atatgttggtatcgtcaccataataatgaatgactatccaaaattcaagtatgctctttt 40962000
Query: 888 ggctgtaatgggtgcctatgtgttactaaaacgtgaatcctaagatgaaaagcagttcct 947
||||| ||||||||| ||||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 40961999 ggctgcaatgggtgcacatgtgttactaaaacatgaatcctaaaatgagaagcagttcct 40961940
Query: 948 gggaccagaccgaa-------ctgctaaaaaagagaaaaactaatatatttgaaatgttc 1000
||||||||| ||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 40961939 gggaccagattgaagtgaattttgcagaaaaagaataaaactaatatatttgaaatgttc 40961880
Query: 1001 cactttctgtataaaagggaacaatgtggagacatttttgtcttgttcaaataaatgatt 1060
|||||| |||||| ||||||| |||| |||||||||||| |||||||||||||
Sbjct: 40961879 cactttttgtata------aacaatgcagagatgtttttgtcttgtccaaataaatgatt 40961826
Query: 1061 cat 1063
|||
Sbjct: 40961825 cat 40961823
>Sscrofa_Chr02
|| Length = 162569375
Score = 65.9 bits (33), Expect = 4e-08
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 985 tatatttgaaatgttccactttctgtataaaagggaacaatgtggagacatttttgtctt 1044
|||||| ||||| || ||||||||||| ||||| |||| | | |||| ||||||||||
Sbjct: 46762903 tatattggaaatattatactttctgtatgaaaggaaacattatagagatgtttttgtctt 46762962
Query: 1045 gttcaaataaatgattcatca 1065
|| ||||||||||||||||||
Sbjct: 46762963 gtccaaataaatgattcatca 46762983
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,828,621
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 10
Length of query: 1089
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1068
Effective length of database: 2,808,413,156
Effective search space: 2999385250608
Effective search space used: 2999385250608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)