Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003280
(1395 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033197.1| 28S ribosomal protein S27, mitochondrial [Bo... 639 0.0
Alignment gi|NP_001030375.1| pentatricopeptide repeat-containing protein ... 55 1e-07
>ref|NP_001033197.1| 28S ribosomal protein S27, mitochondrial [Bos taurus].
Length = 415
Score = 639 bits (1649), Expect = 0.0
Identities = 328/413 (79%), Positives = 346/413 (83%)
Frame = +1
Query: 22 MASSIVRRGILRARKVSLPQLSLAGRRCLLSAAYVDSHKWEARDKEDCHLADLASLMDKT 201
MA+ +VRR I AR V LPQLSLAG+R LLSAAY DS KWEAR KEDCHLADLASLMDKT
Sbjct: 1 MAAPMVRRAIFLARNVLLPQLSLAGKRYLLSAAYEDSRKWEARAKEDCHLADLASLMDKT 60
Query: 202 YERKLPVSSLTISRFVDNIASREDIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG 381
YERKLPVSSLTISRFVDNI+SRE+IDHAEYYLYKFRHSPNCWYLR+WTIHTWIRQCLKYG
Sbjct: 61 YERKLPVSSLTISRFVDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYG 120
Query: 382 AQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL 561
AQDKALYTL NKVQYGIFPDNYTFNLLMD+FIKKENYKDALSVVFEIMMQEAFEVPSTQL
Sbjct: 121 AQDKALYTLVNKVQYGIFPDNYTFNLLMDHFIKKENYKDALSVVFEIMMQEAFEVPSTQL 180
Query: 562 LSLYVLYHCLAEKTDLSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL 741
LSLYVLY CLA+KTD SWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL
Sbjct: 181 LSLYVLYQCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL 240
Query: 742 RAVYCNMPLLWQPGYLHRALQVMEKVASSPEDGQLCGEALDVLDRVLKAVTAPAQGTXXX 921
RAVY NMPLLW+PGYL RALQVMEKVASSPEDG+LC EAL VLDR LKA+TAPAQ +
Sbjct: 241 RAVYHNMPLLWRPGYLDRALQVMEKVASSPEDGKLCREALGVLDRALKALTAPAQESPEE 300
Query: 922 XXXXXXXXXXXXXXXXXLDVEETEQSKLPQYLERFEALRSKLQALGKVXXXXXXXXXXQL 1101
LDVEETEQSKLP+Y+ER+EAL SKLQALGKV QL
Sbjct: 301 QPQEGEESPASEELMEQLDVEETEQSKLPRYVERYEALHSKLQALGKVESESLLTLTTQL 360
Query: 1102 AKAQLPTCEAEDIAVYEQRLQQWHGERVRLIXXXXXXXXXARPDYEARRAAKA 1260
K QLPTCEAEDIA YEQ+LQ+WH E V LI AR +EARRAAKA
Sbjct: 361 VKEQLPTCEAEDIATYEQKLQEWHLELVNLIEREKEMREKARLKHEARRAAKA 413
>ref|NP_001030375.1| pentatricopeptide repeat-containing protein 2 [Bos taurus].
Length = 384
Score = 55.1 bits (131), Expect = 1e-07
Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Frame = +1
Query: 88 LAGRRCLLSAAYVDSHKWEARDKE-DCHLADLASLMDKTYERKLPVSSLTISRFVDNI-- 258
L +R LL+ + V +++ + C+L + E KL + L + + +
Sbjct: 37 LGAKRYLLTDSIVKLKEFQRKKVAVACNLPGTKETYLRNLEEKLTQNKLILKEELRTLLH 96
Query: 259 --ASREDIDHAEYYLYKFRHSPNCWYLRDWTIHT-WIRQCLKYGAQDKALYTLKNKVQYG 429
SR+D++ A++ +Y++ L ++ ++R C + +D A+ +K++ G
Sbjct: 97 LCTSRDDVELAKHVIYRYHAENRNITLGEYKFGPLFVRLCYELDLEDSAVELIKDQHLQG 156
Query: 430 IFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQLLSLYVLY 582
F D+ +FN+LMD K Y+ AL V+ ++ Q+ T +L+ + Y
Sbjct: 157 FFSDSTSFNILMDMLFIKGKYRSALEVLIQMKNQDLKFNKDTYVLAFAICY 207
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,546,360
Number of extensions: 1481090
Number of successful extensions: 5424
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5382
Number of HSP's successfully gapped: 2
Length of query: 465
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,174,046
Effective search space: 5088482514
Effective search space used: 5088482514
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003280
(1395 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852973.1| PREDICTED: similar to mitochondrial ribosomal p... 632 0.0
>ref|XP_852973.1| PREDICTED: similar to mitochondrial ribosomal protein S27 [Canis
familiaris].
Length = 452
Score = 632 bits (1629), Expect = 0.0
Identities = 320/413 (77%), Positives = 347/413 (84%)
Frame = +1
Query: 22 MASSIVRRGILRARKVSLPQLSLAGRRCLLSAAYVDSHKWEARDKEDCHLADLASLMDKT 201
MA+ IV RG L AR V LP SLAG+R LLSAAYVD+HKWEAR+KE CHLADLASLMDKT
Sbjct: 1 MAAPIVWRGFLLARNVPLPSRSLAGKRGLLSAAYVDNHKWEAREKEHCHLADLASLMDKT 60
Query: 202 YERKLPVSSLTISRFVDNIASREDIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG 381
YERKLPVSSLTISRFVDNI+SRE+IDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG
Sbjct: 61 YERKLPVSSLTISRFVDNISSREEIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG 120
Query: 382 AQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL 561
AQDKALYTL NKVQYGIFPDN+TFNLL+DYFIKKENYKDALSVVFEIMMQEAFEVPSTQL
Sbjct: 121 AQDKALYTLVNKVQYGIFPDNFTFNLLIDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL 180
Query: 562 LSLYVLYHCLAEKTDLSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL 741
LSL+VLYHCLA+KTD SWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQ+GL
Sbjct: 181 LSLHVLYHCLAKKTDCSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQRGL 240
Query: 742 RAVYCNMPLLWQPGYLHRALQVMEKVASSPEDGQLCGEALDVLDRVLKAVTAPAQGTXXX 921
RAVY NMPLLWQPGYL RALQVMEKVASSPEDG+LC EAL VLDR L A+TAPA +
Sbjct: 241 RAVYHNMPLLWQPGYLDRALQVMEKVASSPEDGKLCAEALAVLDRTLTALTAPAPQSSEE 300
Query: 922 XXXXXXXXXXXXXXXXXLDVEETEQSKLPQYLERFEALRSKLQALGKVXXXXXXXXXXQL 1101
LD+EETEQSKLP+YLERF+ L+SKL+ALG+V +L
Sbjct: 301 QPREGEDGQGSGDLLEQLDIEETEQSKLPRYLERFKDLQSKLEALGRVESESLLALTTRL 360
Query: 1102 AKAQLPTCEAEDIAVYEQRLQQWHGERVRLIXXXXXXXXXARPDYEARRAAKA 1260
+ QLPTCEAED+A YEQ+LQQWH ERV LI A+ ++EARRAAKA
Sbjct: 361 IQEQLPTCEAEDMATYEQKLQQWHLERVHLIQREQEQRERAKREHEARRAAKA 413
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,568,655
Number of extensions: 1512943
Number of successful extensions: 5393
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5369
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 359
Effective length of database: 15,340,888
Effective search space: 5507378792
Effective search space used: 5507378792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003280
(1395 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055899.2| 28S ribosomal protein S27, mitochondrial [Homo ... 608 e-174
Alignment gi|NP_079030.3| pentatricopeptide repeat-containing protein 2 [... 52 1e-06
>ref|NP_055899.2| 28S ribosomal protein S27, mitochondrial [Homo sapiens].
Length = 414
Score = 608 bits (1568), Expect = e-174
Identities = 311/413 (75%), Positives = 343/413 (83%)
Frame = +1
Query: 22 MASSIVRRGILRARKVSLPQLSLAGRRCLLSAAYVDSHKWEARDKEDCHLADLASLMDKT 201
MA+SIVRRG+L AR+V LPQLS AG+R LLS+AYVDSHKWEAR+KE LADLASLMDKT
Sbjct: 1 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT 60
Query: 202 YERKLPVSSLTISRFVDNIASREDIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG 381
+ERKLPVSSLTISR +DNI+SRE+IDHAEYYLYKFRHSPNCWYLR+WTIHTWIRQCLKY
Sbjct: 61 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD 120
Query: 382 AQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL 561
AQDKALYTL NKVQYGIFPDN+TFNLLMD FIKKENYKDALSVVFE+MMQEAFEVPSTQL
Sbjct: 121 AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL 180
Query: 562 LSLYVLYHCLAEKTDLSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL 741
LSLYVL+HCLA+KTD SWEEERNFGASLLLPGLKQKNSVG SSQLYGYALLGKVELQQGL
Sbjct: 181 LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL 240
Query: 742 RAVYCNMPLLWQPGYLHRALQVMEKVASSPEDGQLCGEALDVLDRVLKAVTAPAQGTXXX 921
RAVY NMPL+W+PGYL RALQVMEKVA+SPED +LC EALDVL VLKA+T+ A G
Sbjct: 241 RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTS-ADGASEE 299
Query: 922 XXXXXXXXXXXXXXXXXLDVEETEQSKLPQYLERFEALRSKLQALGKVXXXXXXXXXXQL 1101
LD+EETEQSKLPQYLERF+AL SKLQALGK+ QL
Sbjct: 300 QSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQL 359
Query: 1102 AKAQLPTCEAEDIAVYEQRLQQWHGERVRLIXXXXXXXXXARPDYEARRAAKA 1260
K +L TCEAEDIA YEQ LQQWH + V+LI A+ +Y+A++AAKA
Sbjct: 360 VKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKA 412
>ref|NP_079030.3| pentatricopeptide repeat-containing protein 2 [Homo sapiens].
Length = 388
Score = 52.0 bits (123), Expect = 1e-06
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Frame = +1
Query: 163 CHLADLASLMDKTYERKLPVSSLTISRFVDNIA----SREDIDHAEYYLYKFRHSPNCWY 330
C+L+ + ++KL + L + + + SR+ ++ A+ +Y++ +
Sbjct: 67 CNLSGTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRYHAENKNFT 126
Query: 331 LRDWTIHT-WIRQCLKYGAQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALS 507
L ++ ++R C + ++ A+ +K++ G F D+ +FN+LMD K YK AL
Sbjct: 127 LGEYKFGPLFVRLCYELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSALQ 186
Query: 508 VVFEIMMQEAFEVPSTQLLSLYVLY 582
V+ E+ Q+ T +L+ + Y
Sbjct: 187 VLIEMKNQDVKFTKDTYVLAFAICY 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,721,851
Number of extensions: 1491843
Number of successful extensions: 5208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5182
Number of HSP's successfully gapped: 2
Length of query: 465
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,802,980
Effective search space: 5314269820
Effective search space used: 5314269820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003280
(1395 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776118.2| 28S ribosomal protein S27, mitochondrial [Mus m... 579 e-165
Alignment gi|NP_081149.1| pentatricopeptide repeat-containing protein 2 [... 51 2e-06
>ref|NP_776118.2| 28S ribosomal protein S27, mitochondrial [Mus musculus].
Length = 415
Score = 579 bits (1493), Expect = e-165
Identities = 293/412 (71%), Positives = 332/412 (80%)
Frame = +1
Query: 22 MASSIVRRGILRARKVSLPQLSLAGRRCLLSAAYVDSHKWEARDKEDCHLADLASLMDKT 201
MA+ +VR G+L AR++ +L LAG+RCLLSAAYVDSH+WEAR+KE+ HLADLASLMDK
Sbjct: 1 MAAPMVRCGMLLARRLDASRLCLAGKRCLLSAAYVDSHQWEAREKEEYHLADLASLMDKA 60
Query: 202 YERKLPVSSLTISRFVDNIASREDIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG 381
YERKLPVSSL+ISRFVDNIASRED+D AEYYLYKFRHSPNCWYLRDWTIH+WIRQCLKYG
Sbjct: 61 YERKLPVSSLSISRFVDNIASREDLDSAEYYLYKFRHSPNCWYLRDWTIHSWIRQCLKYG 120
Query: 382 AQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL 561
AQDKALYTL NKVQYGIFPDN+TFNLLMDYFIKK NYKDALSVVFEIMMQEAF+VPSTQ
Sbjct: 121 AQDKALYTLVNKVQYGIFPDNFTFNLLMDYFIKKGNYKDALSVVFEIMMQEAFDVPSTQF 180
Query: 562 LSLYVLYHCLAEKTDLSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL 741
LSLYVLY CLAEKT+L+WEEER+FGASLLL GLKQ+N+VGLSSQLYGYALLGKVELQ+G+
Sbjct: 181 LSLYVLYRCLAEKTELTWEEERDFGASLLLSGLKQRNTVGLSSQLYGYALLGKVELQRGV 240
Query: 742 RAVYCNMPLLWQPGYLHRALQVMEKVASSPEDGQLCGEALDVLDRVLKAVTAPAQGTXXX 921
RAVY MPL+W PGYL RALQVME+VASSPED +L E LDVLD VLK VT+P T
Sbjct: 241 RAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDGVLKVVTSPDVQTSEA 300
Query: 922 XXXXXXXXXXXXXXXXXLDVEETEQSKLPQYLERFEALRSKLQALGKVXXXXXXXXXXQL 1101
LD EE EQSKLP+YLERF+A RSKLQ L +V QL
Sbjct: 301 QPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQELNRVESESLLTLTTQL 360
Query: 1102 AKAQLPTCEAEDIAVYEQRLQQWHGERVRLIXXXXXXXXXARPDYEARRAAK 1257
K +LP CEAED+A YEQ+L++WH ERV+LI A+ +Y+A AA+
Sbjct: 361 VKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEYQALSAAE 412
>ref|NP_081149.1| pentatricopeptide repeat-containing protein 2 [Mus musculus].
Length = 381
Score = 50.8 bits (120), Expect = 2e-06
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Frame = +1
Query: 196 KTYERKLPVSSLTISRFVDNIA----SREDIDHAEYYLYKFRHSPNCWYLRDWTIH-TWI 360
+ E KL + L + + + S ED+ A+ +Y++ + L ++ ++
Sbjct: 71 RNLEEKLTQNKLILKEELKTLLYLCQSLEDVQLAKAVIYRYHAENKNFTLGEYKFGPVFM 130
Query: 361 RQCLKYGAQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAF 540
R C + +D A+ +++K G F D+ +FN+LMD K Y+ AL V+ E+ Q+
Sbjct: 131 RLCYELDLEDSAVELVRDKHLQGFFLDSTSFNILMDMLFTKGKYERALQVLIEMKNQDVR 190
Query: 541 EVPSTQLLSLYVLY 582
T +L+ + Y
Sbjct: 191 FSKETYILAFAICY 204
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,750,865
Number of extensions: 1259169
Number of successful extensions: 4194
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4172
Number of HSP's successfully gapped: 2
Length of query: 465
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 360
Effective length of database: 12,463,779
Effective search space: 4486960440
Effective search space used: 4486960440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003280
(1395 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134081.1| PREDICTED: 28S ribosomal protein S27, mitoch... 735 0.0
>ref|XP_003134081.1| PREDICTED: 28S ribosomal protein S27, mitochondrial-like [Sus
scrofa].
Length = 415
Score = 735 bits (1897), Expect = 0.0
Identities = 373/413 (90%), Positives = 373/413 (90%)
Frame = +1
Query: 22 MASSIVRRGILRARKVSLPQLSLAGRRCLLSAAYVDSHKWEARDKEDCHLADLASLMDKT 201
MASSIVRRGILRARKVSLPQLSLAGRRCLLSAAYVDSHKWEARDKEDCHLADLASLMDKT
Sbjct: 1 MASSIVRRGILRARKVSLPQLSLAGRRCLLSAAYVDSHKWEARDKEDCHLADLASLMDKT 60
Query: 202 YERKLPVSSLTISRFVDNIASREDIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG 381
YERKLPVSSLTISRFVDNIASREDIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG
Sbjct: 61 YERKLPVSSLTISRFVDNIASREDIDHAEYYLYKFRHSPNCWYLRDWTIHTWIRQCLKYG 120
Query: 382 AQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL 561
AQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL
Sbjct: 121 AQDKALYTLKNKVQYGIFPDNYTFNLLMDYFIKKENYKDALSVVFEIMMQEAFEVPSTQL 180
Query: 562 LSLYVLYHCLAEKTDLSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL 741
LSLYVLYHCLAEKTDLSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL
Sbjct: 181 LSLYVLYHCLAEKTDLSWEEERNFGASLLLPGLKQKNSVGLSSQLYGYALLGKVELQQGL 240
Query: 742 RAVYCNMPLLWQPGYLHRALQVMEKVASSPEDGQLCGEALDVLDRVLKAVTAPAQGTXXX 921
RAVYCNMPLLWQPGYLHRALQVMEKVASSPEDGQLCGEALDVLDRVLKAVTAPAQGT
Sbjct: 241 RAVYCNMPLLWQPGYLHRALQVMEKVASSPEDGQLCGEALDVLDRVLKAVTAPAQGTSEE 300
Query: 922 XXXXXXXXXXXXXXXXXLDVEETEQSKLPQYLERFEALRSKLQALGKVXXXXXXXXXXQL 1101
LDVEETEQSKLPQYLERFEALRSKLQALGKV QL
Sbjct: 301 QPQEGEESQRSEELVEQLDVEETEQSKLPQYLERFEALRSKLQALGKVESESLLTLSTQL 360
Query: 1102 AKAQLPTCEAEDIAVYEQRLQQWHGERVRLIXXXXXXXXXARPDYEARRAAKA 1260
AKAQLPTCEAEDIAVYEQRLQQWHGERVRLI AR DYEARRAAKA
Sbjct: 361 AKAQLPTCEAEDIAVYEQRLQQWHGERVRLIQREQEQRERARQDYEARRAAKA 413
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,854,201
Number of extensions: 952118
Number of successful extensions: 3426
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3406
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 363
Effective length of database: 8,804,438
Effective search space: 3196010994
Effective search space used: 3196010994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003280
(1395 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1407 0.0
Sscrofa_Chr16 714 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 1407 bits (710), Expect = 0.0
Identities = 1005/1099 (91%), Gaps = 27/1099 (2%)
Strand = Plus / Minus
Query: 299 acaaatttcgacacagccccaactgctggtacttgagagattggactatccacacgtgga 358
||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||
Sbjct: 75822010 acaaatttcgacacagccccaaccgctggtacttgagagat-ggactgtccgcacgtggg 75821952
Query: 359 ttaggcagtgtctaaaatatggtgcacaggacaaagccttatacacccttaaaaataagg 418
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75821951 ctaggtagtgtctaaaacatggtgcacaggacaaagccttatacacccttaaaaataagg 75821892
Query: 419 tccaatatggcattttcccagataactatacatttaacttactgatggattatttcataa 478
||||||||||||||||||| |||||| |||||||||| |||||||||||| |||||||||
Sbjct: 75821891 tccaatatggcattttcccggataacgatacatttaatttactgatggatcatttcataa 75821832
Query: 479 agaaagaaaattacaaagatgctttatccgtggtttttgagatcatgatgcaagaagctt 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 75821831 agaaagaaaattacaaagatgctttatccgtggtttttgagatcatgatgcaagcagctt 75821772
Query: 539 ttgaagtcccttccacccagctcctctccctctatgttttgtaccactgccttgcagaga 598
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 75821771 ttgaagtcccttccacccagctcctctccctctgtgttttgtactgctgccttgcagaga 75821712
Query: 599 agacagacttgagttgggaagaggagaggaactttggtgcatccctgttactcccaggtc 658
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct: 75821711 agacagacttgagttgggaagag-agaggaactttggtgcgtccctgttactcccaggcc 75821653
Query: 659 taaagcaaaagaactcagtggggctgagttcccagctgtatggctatgcacttcttggga 718
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 75821652 taaagcaaaggaactcagtggggctgagttcccagctgtgtggctgtgcacttcttggga 75821593
Query: 719 aggtagaattgcagcaagggctgagggctgtgtactgcaacatgccgctgctctggcaac 778
|||| ||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 75821592 aggtggaactgcagcaagggctgagggctgtgttccgcaacgtgccgctgctctggcaac 75821533
Query: 779 caggctacctccacagagcccttcaagtgatggagaaggtggcctcctccccagaagatg 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 75821532 caggctacctccacagagcccttcaagtgatggagaaggtggcctcctccccagaagacg 75821473
Query: 839 gacagctgtgtggagaagcgctcgatgtgctggacagagtgctgaaggctgtgactgctc 898
||| ||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 75821472 gaccgctgtgtagagatgcgctcggtgtgccggacagagtgctgaaggctgtgactgctc 75821413
Query: 899 cggcccaggggacttcagaggaacagccccaggaaggtgaggaaagccagaggtcagaag 958
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 75821412 cagcccaggggacttcagaggaagagccccaggaaggtgaggaaagccagaggtcaggag 75821353
Query: 959 aactggtagagcagttggatgtggaggaaactgaacagtccaagcttcctcagtacctgg 1018
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 75821352 aacgggtagagcagtgggatgtggagggaactgcacagtccaagcttcctcagtacctgg 75821293
Query: 1019 aacgatttgaggctttacgttctaagctgcaggctctgggcaaagtggagtcagaaagcc 1078
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75821292 aacgatttgaggctttacattctaagctgcaggctctgggcaaagtggagtcagaaagcc 75821233
Query: 1079 tgctgaccctgagcacccagctcgccaaggcccagctccccacctgtgaagcggaagaca 1138
||| ||||||| ||||||||||||||||||| | | ||||| |||||| ||||
Sbjct: 75821232 tgcggaccctgggcacccagctcgccaaggcgcgg--------ctgtggagcggaggaca 75821181
Query: 1139 tcgccgtctatgagcagaggctgcagcagtggcacggggagcgcgtacgtttgatccaga 1198
| |||||||||||||||||||||||||||||||| ||||| | || |||||||||||||
Sbjct: 75821180 ccaccgtctatgagcagaggctgcagcagtggcac-gggagtgagtgcgtttgatccaga 75821122
Query: 1199 gagaacaagagcagagggagagggcgaggccagattacgaggctcggagagcagccaagg 1258
| |||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 75821121 gggaacaagagcagagggtgagggcgaggcaggattacaaggctcagagagcagccaagg 75821062
Query: 1259 c--atctgcctaaccaggccgctcggggaccccaggaccctcaccagacctgctgcagga 1316
| |||||||| |||||||| ||||||||||||||| ||||| ||||||| ||||
Sbjct: 75821061 caaatctgcctcaccaggcccctcggggaccccagg-ccctccgcagacctactgc---- 75821007
Query: 1317 ttcatagtcactcagctgcctccttttcttgaagcggagcacctgtggtgtacaggccat 1376
|| || | ||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 75821006 ctc---------catccaccttcttttcttaaagcggagcacctgtggtgtacaggccat 75820956
Query: 1377 gctgtcccacctgtccagc 1395
|||||||||||||||||||
Sbjct: 75820955 gctgtcccacctgtccagc 75820937
Score = 1392 bits (702), Expect = 0.0
Identities = 1004/1099 (91%), Gaps = 28/1099 (2%)
Strand = Plus / Plus
Query: 299 acaaatttcgacacagccccaactgctggtacttgagagattggactatccacacgtgga 358
||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||
Sbjct: 75934538 acaaatttcgacacagccccaaccgctggtacttgagagat-ggactgtccgcacgtggg 75934596
Query: 359 ttaggcagtgtctaaaatatggtgcacaggacaaagccttatacacccttaaaaataagg 418
|||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 75934597 ctaggtagtgtctaaaacatggtgcacaggacaaagccttatacaccct-aaaaataagg 75934655
Query: 419 tccaatatggcattttcccagataactatacatttaacttactgatggattatttcataa 478
||||||||||||||||||| |||||| |||||||||| |||||||||||| |||||||||
Sbjct: 75934656 tccaatatggcattttcccggataacgatacatttaatttactgatggatcatttcataa 75934715
Query: 479 agaaagaaaattacaaagatgctttatccgtggtttttgagatcatgatgcaagaagctt 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 75934716 agaaagaaaattacaaagatgctttatccgtggtttttgagatcatgatgcaagcagctt 75934775
Query: 539 ttgaagtcccttccacccagctcctctccctctatgttttgtaccactgccttgcagaga 598
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 75934776 ttgaagtcccttccacccagctcctctccctctgtgttttgtactgctgccttgcagaga 75934835
Query: 599 agacagacttgagttgggaagaggagaggaactttggtgcatccctgttactcccaggtc 658
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct: 75934836 agacagacttgagttgggaagag-agaggaactttggtgcgtccctgttactcccaggcc 75934894
Query: 659 taaagcaaaagaactcagtggggctgagttcccagctgtatggctatgcacttcttggga 718
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 75934895 taaagcaaaggaactcagtggggctgagttcccagctgtgtggctgtgcacttcttggga 75934954
Query: 719 aggtagaattgcagcaagggctgagggctgtgtactgcaacatgccgctgctctggcaac 778
|||| ||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 75934955 aggtggaactgcagcaagggctgagggctgtgttccgcaacgtgccgctgctctggcaac 75935014
Query: 779 caggctacctccacagagcccttcaagtgatggagaaggtggcctcctccccagaagatg 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 75935015 caggctacctccacagagcccttcaagtgatggagaaggtggcctcctccccagaagacg 75935074
Query: 839 gacagctgtgtggagaagcgctcgatgtgctggacagagtgctgaaggctgtgactgctc 898
||| ||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 75935075 gaccgctgtgtagagacgcgctcggtgtgccggacagagtgctgaaggctgtgactgctc 75935134
Query: 899 cggcccaggggacttcagaggaacagccccaggaaggtgaggaaagccagaggtcagaag 958
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 75935135 cagcccaggggacttcagaggaagagccccaggaaggtgaggaaagccagaggtcaggag 75935194
Query: 959 aactggtagagcagttggatgtggaggaaactgaacagtccaagcttcctcagtacctgg 1018
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 75935195 aacgggtagagcagtgggatgtggagggaactgcacagtccaagcttcctcagtacctgg 75935254
Query: 1019 aacgatttgaggctttacgttctaagctgcaggctctgggcaaagtggagtcagaaagcc 1078
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75935255 aacgatttgaggctttacattctaagctgcaggctctgggcaaagtggagtcagaaagcc 75935314
Query: 1079 tgctgaccctgagcacccagctcgccaaggcccagctccccacctgtgaagcggaagaca 1138
||| ||||||| ||||||||||||||||||| | | ||||| |||||| ||||
Sbjct: 75935315 tgcggaccctgggcacccagctcgccaaggcgcgg--------ctgtggagcggaggaca 75935366
Query: 1139 tcgccgtctatgagcagaggctgcagcagtggcacggggagcgcgtacgtttgatccaga 1198
| |||||||||||||||||||||||||||||||| ||||| | || |||||||||||||
Sbjct: 75935367 ccaccgtctatgagcagaggctgcagcagtggcac-gggagtgagtgcgtttgatccaga 75935425
Query: 1199 gagaacaagagcagagggagagggcgaggccagattacgaggctcggagagcagccaagg 1258
| |||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 75935426 gggaacaagagcagagggcgagggcgaggcaggattacaaggctcagagagcagccaagg 75935485
Query: 1259 c--atctgcctaaccaggccgctcggggaccccaggaccctcaccagacctgctgcagga 1316
| |||||||| |||||||| ||||||||||||||| ||||| ||||||| ||||
Sbjct: 75935486 caaatctgcctcaccaggcccctcggggaccccagg-ccctccgcagacctactgc---- 75935540
Query: 1317 ttcatagtcactcagctgcctccttttcttgaagcggagcacctgtggtgtacaggccat 1376
|| || | ||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 75935541 ctc---------catccaccttcttttcttaaagcggagcacctgtggtgtacaggccat 75935591
Query: 1377 gctgtcccacctgtccagc 1395
|||||||||||||||||||
Sbjct: 75935592 gctgtcccacctgtccagc 75935610
Score = 89.7 bits (45), Expect = 4e-15
Identities = 110/129 (85%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 67 gtgtcgctgcctcaactctccctggcaggtagaagatgcctgctttctgcagcgtatgtg 126
||||||| ||||| ||||||||||||||| |||||| ||||||||||||||| | | |||
Sbjct: 75822203 gtgtcgccgcctcgactctccctggcaggcagaaga-gcctgctttctgcagtgcacgtg 75822145
Query: 127 gacagccataaatgggaagcaagagataaagaagattgtcacctcgcggatctagcatct 186
||||||| |||| ||| ||||||| |||| | |||| ||||||||||||||||| ||
Sbjct: 75822144 gacagccgtaaacggg-ggcaagaggaaaaggacattgccacctcgcggatctagcgtcc 75822086
Query: 187 ttaatggat 195
||| |||||
Sbjct: 75822085 ttagtggat 75822077
Score = 89.7 bits (45), Expect = 4e-15
Identities = 110/129 (85%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 67 gtgtcgctgcctcaactctccctggcaggtagaagatgcctgctttctgcagcgtatgtg 126
||||||| ||||| ||||||||||||||| |||||| ||||||||||||||| | | |||
Sbjct: 75934345 gtgtcgccgcctcgactctccctggcaggcagaaga-gcctgctttctgcagtgcacgtg 75934403
Query: 127 gacagccataaatgggaagcaagagataaagaagattgtcacctcgcggatctagcatct 186
||||||| |||| ||| ||||||| |||| | |||| ||||||||||||||||| ||
Sbjct: 75934404 gacagccgtaaacggg-ggcaagaggaaaaggacattgccacctcgcggatctagcgtcc 75934462
Query: 187 ttaatggat 195
||| |||||
Sbjct: 75934463 ttagtggat 75934471
>Sscrofa_Chr16
|| Length = 86898991
Score = 714 bits (360), Expect = 0.0
Identities = 366/368 (99%)
Strand = Plus / Minus
Query: 1028 aggctttacgttctaagctgcaggctctgggcaaagtggagtcagaaagcctgctgaccc 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52498442 aggctttacgttctaagctgcaggctctgggcaaagtggagtcagaaagcctgctgaccc 52498383
Query: 1088 tgagcacccagctcgccaaggcccagctccccacctgtgaagcggaagacatcgccgtct 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52498382 tgagcacccagctcgccaaggcccagctccccacctgtgaagcggaagacatcgccgtct 52498323
Query: 1148 atgagcagaggctgcagcagtggcacggggagcgcgtacgtttgatccagagagaacaag 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52498322 atgagcagaggctgcagcagtggcacggggagcgcgtacgtttgatccagagagaacaag 52498263
Query: 1208 agcagagggagagggcgaggccagattacgaggctcggagagcagccaaggcatctgcct 1267
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 52498262 agcagagggagagggcgaggcaggattacgaggctcggagagcagccaaggcatctgcct 52498203
Query: 1268 aaccaggccgctcggggaccccaggaccctcaccagacctgctgcaggattcatagtcac 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52498202 aaccaggccgctcggggaccccaggaccctcaccagacctgctgcaggattcatagtcac 52498143
Query: 1328 tcagctgcctccttttcttgaagcggagcacctgtggtgtacaggccatgctgtcccacc 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52498142 tcagctgcctccttttcttgaagcggagcacctgtggtgtacaggccatgctgtcccacc 52498083
Query: 1388 tgtccagc 1395
||||||||
Sbjct: 52498082 tgtccagc 52498075
Score = 343 bits (173), Expect = 2e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 858 gctcgatgtgctggacagagtgctgaaggctgtgactgctccggcccaggggacttcaga 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52501617 gctcgatgtgctggacagagtgctgaaggctgtgactgctccggcccaggggacttcaga 52501558
Query: 918 ggaacagccccaggaaggtgaggaaagccagaggtcagaagaactggtagagcagttgga 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52501557 ggaacagccccaggaaggtgaggaaagccagaggtcagaagaactggtagagcagttgga 52501498
Query: 978 tgtggaggaaactgaacagtccaagcttcctcagtacctggaacgatttgagg 1030
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52501497 tgtggaggaaactgaacagtccaagcttcctcagtacctggaacgatttgagg 52501445
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 715 gggaaggtagaattgcagcaagggctgagggctgtgtactgcaacatgccgctgctctgg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52504009 gggaaggtagaattgcagcaagggctgagggctgtgtactgcaacatgccgctgctctgg 52503950
Query: 775 caaccaggctacctccacagagcccttcaagtgatggagaaggtggcctcctccccagaa 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52503949 caaccaggctacctccacagagcccttcaagtgatggagaaggtggcctcctccccagaa 52503890
Query: 835 gatggacagctgtgtggagaagcg 858
||||||||||||||||||||||||
Sbjct: 52503889 gatggacagctgtgtggagaagcg 52503866
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 495 agatgctttatccgtggtttttgagatcatgatgcaagaagcttttgaagtcccttccac 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52510368 agatgctttatccgtggtttttgagatcatgatgcaagaagcttttgaagtcccttccac 52510309
Query: 555 ccagctcctctccctctatgttttgtaccactgccttgcagagaagacagacttgagt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52510308 ccagctcctctccctctatgttttgtaccactgccttgcagagaagacagacttgagt 52510251
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 303 atttcgacacagccccaactgctggtacttgagagattggactatccacacgtggattag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52517720 atttcgacacagccccaactgctggtacttgagagattggactatccacacgtggattag 52517661
Query: 363 gcagtgtctaaaatatggtgcacaggacaaagccttatacacccttaaaaataaggt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52517660 gcagtgtctaaaatatggtgcacaggacaaagccttatacacccttaaaaataaggt 52517604
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 613 tgggaagaggagaggaactttggtgcatccctgttactcccaggtctaaagcaaaagaac 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52506996 tgggaagaggagaggaactttggtgcatccctgttactcccaggtctaaagcaaaagaac 52506937
Query: 673 tcagtggggctgagttcccagctgtatggctatgcacttcttgg 716
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52506936 tcagtggggctgagttcccagctgtatggctatgcacttcttgg 52506893
Score = 178 bits (90), Expect = 5e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 7 ttggtatgctccaagatggcgtcctccatagtgcggcgcgggatcctgcgggcgcggaaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52593605 ttggtatgctccaagatggcgtcctccatagtgcggcgcgggatcctgcgggcgcggaaa 52593546
Query: 67 gtgtcgctgcctcaactctccctggcaggt 96
||||||||||||||||||||||||||||||
Sbjct: 52593545 gtgtcgctgcctcaactctccctggcaggt 52593516
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 416 aggtccaatatggcattttcccagataactatacatttaacttactgatggattatttca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52513356 aggtccaatatggcattttcccagataactatacatttaacttactgatggattatttca 52513297
Query: 476 taaagaaagaaaattacaaag 496
|||||||||||||||||||||
Sbjct: 52513296 taaagaaagaaaattacaaag 52513276
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 92 caggtagaagatgcctgctttctgcagcgtatgtggacagccataaatgggaagcaagag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52586294 caggtagaagatgcctgctttctgcagcgtatgtggacagccataaatgggaagcaagag 52586235
Query: 152 ataaagaagattgtcacctcg 172
|||||||||||||||||||||
Sbjct: 52586234 ataaagaagattgtcacctcg 52586214
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 172 gcggatctagcatctttaatggataaaacatatgagagaaagttgcctgttagttcttta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52574064 gcggatctagcatctttaatggataaaacatatgagagaaagttgcctgttagttcttta 52574005
Query: 232 acaatatcacgg 243
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Sbjct: 52574004 acaatatcacgg 52573993
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 172 gcggatctagcatctttaatggataaaacatatgagagaaagttgcctgttagttcttta 231
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Sbjct: 52773993 gcggatctagcatctttaatggataaaacatatgagagaaagttgcctgttagttcttta 52774052
Query: 232 acaatatcacgg 243
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Sbjct: 52774053 acaatatcacgg 52774064
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 243 gtttgtggacaacattgcatctcgagaagatatagaccacgcggagtattatctttacaa 302
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Sbjct: 52571857 gtttgtggacaacattgcatctcgagaagatatagaccacgcggagtattatctttacaa 52571798
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,677,697
Number of extensions: 368
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 20
Length of query: 1395
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1374
Effective length of database: 2,808,413,156
Effective search space: 3858759676344
Effective search space used: 3858759676344
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)